Cp4.1LG11g04450 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG11g04450
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionRNA-binding protein 38-like
LocationCp4.1LG11: 2500981 .. 2504115 (+)
RNA-Seq ExpressionCp4.1LG11g04450
SyntenyCp4.1LG11g04450
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGCGCCAGAGTCTCTGTTCACAGCTGTTAATTAACGGACATTGCAAGAGGCCAACAACATCGACCATTTTCAGTTCCAGAATTACAATTCCTCTCCCATGGCCGCCGCCATCTCTCCATAAATCCCTTCCCATTTGTCTCATTCATGAACAACATCACCGGCCGCTTCCCTCTCCGCCGTACTCCGCCTTCCTCCTCTTAATCGACCCGGCGGCGCCCATGGCTGAAAATTTCTCCAACACACACCCGCCGCCCTTCGGCGACACCACCTGGACCAAACTCTTCGTCGGAGGCCTCGCCTGGGAGACACAATCCGATGAAATGCGCGCCTTCTTCCAACAATTTGGGGAAATTCTTGAAGCTGTCATAATCCATGATAAGAACACCGGCAAATCCAAGGGCTACGGATTCGTAAGTGTTCCTTAATTCCTTCGATTTGTCGTTTTTTTTTAATAAAAAAAATTTAATTTAATTTTTGTTCTGATTAATTAGGTCACTTTTAGAGATCCTGATTCGGCTAGAAGGGCGTGTGCTAATCCTAATCCGATTATTTGTGGGAGGAGGGCTAATTGTAACATCGCCGCCTTCGGCCGGGCTCGTCCTCCGCCGCCGCCGCCGCTGCTACTTGGAGGTTTCCACCCCGATCGCCTTCCGTACCTGAATTAATTTTCGTGAATTTTTTAATTGGTTGACATTTTAAATTGGTGGAATTGTACAGGACGAAATCAAATTGGGAATCTTCAAACTGCAAGTGCGGCTGCAGGGTCTTACGGTGGGTTACTGACGCCGTATCCTCCGCCGCCGTCCCCGCCGCCGCCGCAGATCATGTTCCCAGCGTATAGGTACGTTTGCATGGTCCTGCAACACCCCACAGCGTTTTGGACGGCGACAACTTTTTAAGGAAAAACCATTTTGCTGGACAACAAGTCAAATGTTTATCCAATNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTTGTTCTTATCCTTTTTTAATTTTTAATTATTTAATTATTTAATTTTAATTTTTTTTTGTTGCAGATACCGATCCTACGCCCCAAATTACACACTTCCTTACCATCAAGTAGGCCATTTTCTCTTAATTTTCAGTTTATTTATTTATTTATTAAATTTTATTTGGGTCCCACAACTTTTTCTATTTTTAATTTTTTTAATATCTATTTTAATTCTTCCACCGTCAATTATTGACATAATTTTTCACCTCATCATTGTACTGACCTAAACAAAGTGAAACTTCGATCTCGACCCCGACCCAATGAGCATAAGATACTATTTGACTCTAGATAAGTTGACCCAATGTTTAATAGCCAACTCCATAGTTCAATTTTTGAGCTTGATTCATTGGACTAACATGTTAACGTTGAACTGTACTTGTTTTGACAGGCTATTTATAACCCACAACTTCAATCGGCTCAGTTGTACCAACCGTCACCATGTTCTTCTTCTTATGGCTATGGCTATGGCTATGGCTATCCTTCTTCTTCTTCACCGTCACCAAGGGGAGCATTTCCCGTACATGGCTACGAGCATGGGCATGTGCATGGACATGGTCCTTCTTCTCCATTGTCATCCTCACCTTCATACTTCCCTTACTATACAAATTACACCCACATGCAACAACCGTTATTCTACGCTCACATGCACCAGATCGCCACTCCCACTACTGGTAAATTTATATAATTCTTCGCTCTTTTAATTAATTAATTAATTTTATATCATTATTCCCTATTTTAATTGCATCACCAAATTATGATTATCCCATGTGACGAATGAACAGTCTGTGATTAGAAGTTATTAGGGTTAAGTAATGATATTTTTTTAAAAAATTAATTTTTAAATATATTTTAAAAAAAATTAATATGTTACCACCTTTAGAAATTTTAAAAATTTATGGTATTTTTAGACACAAATTTACGTATACTGGGTCGGAGAAATCTTTTAAACAAATTCTAAATTTTGAATTAGTCGGGTCATTACCAAACAATCCATATAGAGTTTACAACGTTAACCCTTTAATTTCAGTTTTTGTTGATTTTTGTTGTCGGGTTATTCTTTTATATATATTTATCGGTTATAATGTATCACTATCATCAGTTACAGACGTCGATAATTGTTAATGTAAAAAGTACGGTTGAGTTGAGTTGTAATTAATATATAGGTCGGAAGTTAGAAAGCTTATGTATAATTTGAATGTTGGTTCAGGTAGACAGAGTCCAACAGAGACCGAAGGAGGGGCCAGTGGCTCTAATACCCCAAATACTTGTTAGAATTATCTTGTTCATATTATATTATTAATTATAATTATAATTATATTGAACCATATTTTTCTATTTTATTATTTTCTTAAATATCATTTTAGTTCACTTTTTAAAAAATCATTTCACATTTAAAATATTCTTAAATTAATCAATAAATAAGTTTTTGTCATATATTGACGGTAATATTTTTTAAATTTTTATTTTTTTTTTATTTTTATGGAAGGATGAACTAAATTAAAAATAAATAAATAAATTTTTATTAATTTAGTCCATTTTTTTTTATTTTTATCTCTTTTTTTTTTCAATTGAAATTTGAGCATGATATTTTATTTATTAAATTTCTTAAAATAAATTTTCTTTGTACAAATATAAATCAAAATAAAAAAGGAATCAAATTAGACCTCGATGAAAACTAATAATAATAAATAAAAATGACGTCACATGACCAACCACCTCTTTCTCTCAAACTTACTAAAACCCCCGTGGGTCAAACGAGCGTAAACACCAATAAGTTACAGGATCGTACAACGTCGGCGTATCCTGAATAAGCCCCCTTCCCATATCCACCGGCGAAGAGGCGTTTCCGGCCAATAGCATACCGTCGAGACCAACATCAGCGTTGGGCAGTAGGGAGCAGTGATGTTTGTGGACCGTAAATGGGCTAGTGAATTGACCAAGCCCACTAACCCGAAGACTGAGTCACTGAATTTTCAATACATATGAAAGTTGAATTCGATTGTCGTCTCAATCATTGTAGGACAAAAATCGCTCGTTCATGTAAAATGTGTTACTAATAATAAAAATATTTATTTTTTTTAACTATAAAGGAATAAAAATATTAGTGAAATT

mRNA sequence

GGCGCCAGAGTCTCTGTTCACAGCTGTTAATTAACGGACATTGCAAGAGGCCAACAACATCGACCATTTTCAGTTCCAGAATTACAATTCCTCTCCCATGGCCGCCGCCATCTCTCCATAAATCCCTTCCCATTTGTCTCATTCATGAACAACATCACCGGCCGCTTCCCTCTCCGCCGTACTCCGCCTTCCTCCTCTTAATCGACCCGGCGGCGCCCATGGCTGAAAATTTCTCCAACACACACCCGCCGCCCTTCGGCGACACCACCTGGACCAAACTCTTCGTCGGAGGCCTCGCCTGGGAGACACAATCCGATGAAATGCGCGCCTTCTTCCAACAATTTGGGGAAATTCTTGAAGCTGTCATAATCCATGATAAGAACACCGGCAAATCCAAGGGCTACGGATTCGTCACTTTTAGAGATCCTGATTCGGCTAGAAGGGCGTGTGCTAATCCTAATCCGATTATTTGTGGGAGGAGGGCTAATTGTAACATCGCCGCCTTCGGCCGGGCTCGTCCTCCGCCGCCGCCGCCGCTGCTACTTGGAGGACGAAATCAAATTGGGAATCTTCAAACTGCAAGTGCGGCTGCAGGGTCTTACGGTGGGTTACTGACGCCGTATCCTCCGCCGCCGTCCCCGCCGCCGCCGCAGATCATGTTCCCAGCGTATAGATACCGATCCTACGCCCCAAATTACACACTTCCTTACCATCAAGCTATTTATAACCCACAACTTCAATCGGCTCAGTTGTACCAACCGTCACCATGTTCTTCTTCTTATGGCTATGGCTATGGCTATGGCTATCCTTCTTCTTCTTCACCGTCACCAAGGGGAGCATTTCCCGTACATGGCTACGAGCATGGGCATGTGCATGGACATGGTCCTTCTTCTCCATTGTCATCCTCACCTTCATACTTCCCTTACTATACAAATTACACCCACATGCAACAACCGTTATTCTACGCTCACATGCACCAGATCGCCACTCCCACTACTGGTAGACAGAGTCCAACAGAGACCGAAGGAGGGGCCAGTGGCTCTAATACCCCAAATACTTGTTAGAATTATCTTGTTCATATTATATTATTAATTATAATTATAATTATATTGAACCATATTTTTCTATTTTATTATTTTCTTAAATATCATTTTAGTTCACTTTTTAAAAAATCATTTCACATTTAAAATATTCTTAAATTAATCAATAAATAAGTTTTTGTCATATATTGACGGTAATATTTTTTAAATTTTTATTTTTTTTTTATTTTTATGGAAGGATGAACTAAATTAAAAATAAATAAATAAATTTTTATTAATTTAGTCCATTTTTTTTTATTTTTATCTCTTTTTTTTTTCAATTGAAATTTGAGCATGATATTTTATTTATTAAATTTCTTAAAATAAATTTTCTTTGTACAAATATAAATCAAAATAAAAAAGGAATCAAATTAGACCTCGATGAAAACTAATAATAATAAATAAAAATGACGTCACATGACCAACCACCTCTTTCTCTCAAACTTACTAAAACCCCCGTGGGTCAAACGAGCGTAAACACCAATAAGTTACAGGATCGTACAACGTCGGCGTATCCTGAATAAGCCCCCTTCCCATATCCACCGGCGAAGAGGCGTTTCCGGCCAATAGCATACCGTCGAGACCAACATCAGCGTTGGGCAGTAGGGAGCAGTGATGTTTGTGGACCGTAAATGGGCTAGTGAATTGACCAAGCCCACTAACCCGAAGACTGAGTCACTGAATTTTCAATACATATGAAAGTTGAATTCGATTGTCGTCTCAATCATTGTAGGACAAAAATCGCTCGTTCATGTAAAATGTGTTACTAATAATAAAAATATTTATTTTTTTTAACTATAAAGGAATAAAAATATTAGTGAAATT

Coding sequence (CDS)

ATGGCTGAAAATTTCTCCAACACACACCCGCCGCCCTTCGGCGACACCACCTGGACCAAACTCTTCGTCGGAGGCCTCGCCTGGGAGACACAATCCGATGAAATGCGCGCCTTCTTCCAACAATTTGGGGAAATTCTTGAAGCTGTCATAATCCATGATAAGAACACCGGCAAATCCAAGGGCTACGGATTCGTCACTTTTAGAGATCCTGATTCGGCTAGAAGGGCGTGTGCTAATCCTAATCCGATTATTTGTGGGAGGAGGGCTAATTGTAACATCGCCGCCTTCGGCCGGGCTCGTCCTCCGCCGCCGCCGCCGCTGCTACTTGGAGGACGAAATCAAATTGGGAATCTTCAAACTGCAAGTGCGGCTGCAGGGTCTTACGGTGGGTTACTGACGCCGTATCCTCCGCCGCCGTCCCCGCCGCCGCCGCAGATCATGTTCCCAGCGTATAGATACCGATCCTACGCCCCAAATTACACACTTCCTTACCATCAAGCTATTTATAACCCACAACTTCAATCGGCTCAGTTGTACCAACCGTCACCATGTTCTTCTTCTTATGGCTATGGCTATGGCTATGGCTATCCTTCTTCTTCTTCACCGTCACCAAGGGGAGCATTTCCCGTACATGGCTACGAGCATGGGCATGTGCATGGACATGGTCCTTCTTCTCCATTGTCATCCTCACCTTCATACTTCCCTTACTATACAAATTACACCCACATGCAACAACCGTTATTCTACGCTCACATGCACCAGATCGCCACTCCCACTACTGGTAGACAGAGTCCAACAGAGACCGAAGGAGGGGCCAGTGGCTCTAATACCCCAAATACTTGTTAG

Protein sequence

MAENFSNTHPPPFGDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIHDKNTGKSKGYGFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQTASAAAGSYGGLLTPYPPPPSPPPPQIMFPAYRYRSYAPNYTLPYHQAIYNPQLQSAQLYQPSPCSSSYGYGYGYGYPSSSSPSPRGAFPVHGYEHGHVHGHGPSSPLSSSPSYFPYYTNYTHMQQPLFYAHMHQIATPTTGRQSPTETEGGASGSNTPNTC
Homology
[Close]
BLAST of Cp4.1LG11g04450 vs. ExPASy Swiss-Prot
Match: Q62176 (RNA-binding protein 38 OS=Mus musculus OX=10090 GN=Rbm38 PE=1 SV=2)

HSP 1 Score: 109.4 bits (272), Expect = 6.8e-23
Identity = 81/204 (39.71%), Postives = 109/204 (53.43%), Query Frame = 0 

Query: 15  DTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIHDKNTGKSKGYGFVTFRDPDSAR 74
           DTT+TK+FVGGL + T    +R +F+ FG+I EAV+I D+ TGKS+GYGFVT  D  +A 
Sbjct: 28  DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAD 87

Query: 75  RACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQTASAAAGSYGGLLTP 134
           RAC +PNPII GR+AN N+A  G A+P         G  Q+      +    +YG  LTP
Sbjct: 88  RACKDPNPIIDGRKANVNLAYLG-AKPRSLQTGFAVGVQQL----HPTLIQRTYG--LTP 147

Query: 135 ---YPPP--------PSPPPPQIMFPAYRYRSYAPNYTLPYHQAIYNPQLQSAQLYQPSP 194
              YPP         P+ P P +  P   Y   +P Y   Y  A Y+    +A    P+ 
Sbjct: 148 HYIYPPAIVQPSVVIPATPVPSLSSPYLEYTPASPAYA-QYPPATYDQYPYAA---SPAA 207

Query: 195 CSSSYGYGYGYGYPSS-SSPSPRG 207
            +S  GYGY    P + S+ +P G
Sbjct: 208 ATSFVGYGYPAAVPQALSAAAPAG 220

[Close]
BLAST of Cp4.1LG11g04450 vs. ExPASy Swiss-Prot
Match: Q9M1S3 (Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 8.8e-23
Identity = 94/265 (35.47%), Postives = 125/265 (47.17%), Query Frame = 0 

Query: 13  FGDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIHDKNTGKSKGYGFVTFRDPDS 72
           FGDT  TK+FVGGLAW+T  + M   F ++G+ILEAVII DK T +SKGYGFVTF+D  +
Sbjct: 11  FGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKA 70

Query: 73  ARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQTASAAAGSYGGLL 132
           A RAC +  PII GRRANCN+A+             LGGR +     T+       G   
Sbjct: 71  ATRACEDSTPIINGRRANCNLAS-------------LGGRLRKSPTMTSPQQGPKNGNRA 130

Query: 133 TPYPPPPSPPPPQIMFPAYRYRSYAPNYTLPYHQAIYNPQLQSAQLYQPSPCSSSYGY-- 192
           T   PP      Q  +P+         +    HQA+      SA +      +   GY  
Sbjct: 131 T---PPHVGNHSQWYYPSGFTNQ---QHQQQNHQAVPFYGYPSAYVAPNMTFNQKVGYVG 190

Query: 193 -GYGYGYPSSSSPSPRGAFPVHGYEHGHVHGHGPSSPLSSSPSYFPYYTNYTHMQQPLFY 252
             Y  GY +   P P+   P   Y H H++G G     ++SP   P+YT Y + Q     
Sbjct: 191 GTYMNGYYAQMQPQPQSQ-PQPQYYHHHMYGGGRVMVGAASP-MVPFYTVYPYHQSQAIG 250

Query: 253 AHMHQIATPTTGRQSP-TETEGGAS 274
                 + P +    P + T GG S
Sbjct: 251 FPQPSFSKPLSFSTPPISGTVGGES 254

[Close]
BLAST of Cp4.1LG11g04450 vs. ExPASy Swiss-Prot
Match: Q9H0Z9 (RNA-binding protein 38 OS=Homo sapiens OX=9606 GN=RBM38 PE=1 SV=2)

HSP 1 Score: 107.8 bits (268), Expect = 2.0e-22
Identity = 80/204 (39.22%), Postives = 107/204 (52.45%), Query Frame = 0 

Query: 15  DTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIHDKNTGKSKGYGFVTFRDPDSAR 74
           DTT+TK+FVGGL + T    +R +F+ FG+I EAV+I D+ TGKS+GYGFVT  D  +A 
Sbjct: 30  DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 89

Query: 75  RACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQTASAAAGSYGGLLTP 134
           RAC +PNPII GR+AN N+A  G      P  L  G    +  L   +    +YG  LTP
Sbjct: 90  RACKDPNPIIDGRKANVNLAYLG----AKPRSLQTGFAIGVQQLH-PTLIQRTYG--LTP 149

Query: 135 ---YPPP--------PSPPPPQIMFPAYRYRSYAPNYTLPYHQAIYNPQLQSAQLYQPSP 194
              YPP         P+ P P +  P   Y   +P Y   Y  A Y+    +A    P+ 
Sbjct: 150 HYIYPPAIVQPSVVIPAAPVPSLSSPYIEYTPASPAYA-QYPPATYDQYPYAA---SPAT 209

Query: 195 CSSSYGYGYGYGYPSS-SSPSPRG 207
            +S  GY Y    P + S+ +P G
Sbjct: 210 AASFVGYSYPAAVPQALSAAAPAG 222

[Close]
BLAST of Cp4.1LG11g04450 vs. ExPASy Swiss-Prot
Match: Q6DIV4 (RNA-binding protein 38 OS=Xenopus tropicalis OX=8364 GN=rbm38 PE=2 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 2.0e-22
Identity = 77/191 (40.31%), Postives = 101/191 (52.88%), Query Frame = 0 

Query: 15  DTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIHDKNTGKSKGYGFVTFRDPDSAR 74
           DTT+TK+FVGGL + T    +R +F+ FG+I EAV+I D+ TGKS+GYGFVT  D  +A 
Sbjct: 7   DTTFTKIFVGGLPYHTTDASLRKYFEVFGDIDEAVVITDRQTGKSRGYGFVTMSDRAAAE 66

Query: 75  RACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQTASAAAGSYGGLLTP 134
           RAC +PNPII GR+AN N+A  G        P  L     IG  Q   A      GL   
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLG------AKPRNLQSAFTIGVQQLHPAFIQRPFGLTPQ 126

Query: 135 YPPPPSPPPPQIMFPAYRYRSYAPNYTLPYHQAIYNPQLQ-----SAQLYQPSPCSSSYG 194
           Y  PP+   P ++ P     +  P+   PY    YN   Q     +   Y+  P ++S  
Sbjct: 127 YIYPPAIVQPSVVIP-----TPIPSLQSPYID--YNAATQAFTHYTTAAYEQYPYAASPA 184

Query: 195 YGY-GYGYPSS 200
            GY GYGY S+
Sbjct: 187 TGYMGYGYTSA 184

[Close]
BLAST of Cp4.1LG11g04450 vs. ExPASy Swiss-Prot
Match: Q76LC6 (RNA-binding protein 24 OS=Danio rerio OX=7955 GN=rbm24 PE=2 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.7e-21
Identity = 75/195 (38.46%), Postives = 100/195 (51.28%), Query Frame = 0 

Query: 15  DTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIHDKNTGKSKGYGFVTFRDPDSAR 74
           DTT+TK+FVGGL + T    +R +F+ FGEI EAV+I D+ TGKS+GYGFVT  D  +A 
Sbjct: 7   DTTYTKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAAD 66

Query: 75  RACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQTASAAAGSYGGLLTP 134
           RAC +PNPII GR+AN N+A  G A+P    P    G  QI       A      G+ T 
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLG-AKPRVMQPGFTFGVPQI-----HPAFIQRPYGIPTH 126

Query: 135 YPPPPSPPPPQIMFPAYRYRSYAPNYTLPYHQ---AIYNPQLQSAQL----------YQP 194
           Y  P +   P ++ P  +  + +   + PY     A Y     +A            Y  
Sbjct: 127 YVYPQAFMQPSVVIPHIQPTATSATASSPYIDYTGAAYAQYASAATAAAAAAYEQYPYAA 186

Query: 195 SPCSSSYGYGYGYGY 197
           SP ++ Y    GYGY
Sbjct: 187 SPAATGYVAAAGYGY 195

[Close]
BLAST of Cp4.1LG11g04450 vs. NCBI nr
Match: XP_023546076.1 (RNA-binding protein 38-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 584 bits (1506), Expect = 8.79e-211
Identity = 281/281 (100.00%), Postives = 281/281 (100.00%), Query Frame = 0 

Query: 1   MAENFSNTHPPPFGDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIHDKNTGKSK 60
           MAENFSNTHPPPFGDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIHDKNTGKSK
Sbjct: 1   MAENFSNTHPPPFGDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIHDKNTGKSK 60

Query: 61  GYGFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQT 120
           GYGFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQT
Sbjct: 61  GYGFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQT 120

Query: 121 ASAAAGSYGGLLTPYPPPPSPPPPQIMFPAYRYRSYAPNYTLPYHQAIYNPQLQSAQLYQ 180
           ASAAAGSYGGLLTPYPPPPSPPPPQIMFPAYRYRSYAPNYTLPYHQAIYNPQLQSAQLYQ
Sbjct: 121 ASAAAGSYGGLLTPYPPPPSPPPPQIMFPAYRYRSYAPNYTLPYHQAIYNPQLQSAQLYQ 180

Query: 181 PSPCSSSYGYGYGYGYPSSSSPSPRGAFPVHGYEHGHVHGHGPSSPLSSSPSYFPYYTNY 240
           PSPCSSSYGYGYGYGYPSSSSPSPRGAFPVHGYEHGHVHGHGPSSPLSSSPSYFPYYTNY
Sbjct: 181 PSPCSSSYGYGYGYGYPSSSSPSPRGAFPVHGYEHGHVHGHGPSSPLSSSPSYFPYYTNY 240

Query: 241 THMQQPLFYAHMHQIATPTTGRQSPTETEGGASGSNTPNTC 281
           THMQQPLFYAHMHQIATPTTGRQSPTETEGGASGSNTPNTC
Sbjct: 241 THMQQPLFYAHMHQIATPTTGRQSPTETEGGASGSNTPNTC 281

[Close]
BLAST of Cp4.1LG11g04450 vs. NCBI nr
Match: XP_022961976.1 (RNA-binding protein 38-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 557 bits (1435), Expect = 5.46e-200
Identity = 272/281 (96.80%), Postives = 272/281 (96.80%), Query Frame = 0 

Query: 1   MAENFSNTHPPPFGDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIHDKNTGKSK 60
           MAENFSNTHPPPFGDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVII DKNTGKSK
Sbjct: 1   MAENFSNTHPPPFGDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIRDKNTGKSK 60

Query: 61  GYGFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQT 120
           GYGFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQT
Sbjct: 61  GYGFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQT 120

Query: 121 ASAAAGSYGGLLTPYPPPPSPPPPQIMFPAYRYRSYAPNYTLPYHQAIYNPQLQSAQLYQ 180
            SAAAGSYGGLLTPYPPPPSPPPPQIMFPAYRYRSYAPNYTLPYHQAIYNPQLQSAQLY 
Sbjct: 121 TSAAAGSYGGLLTPYPPPPSPPPPQIMFPAYRYRSYAPNYTLPYHQAIYNPQLQSAQLYP 180

Query: 181 PSPCSSSYGYGYGYGYPSSSSPSPRGAFPVHGYEHGHVHGHGPSSPLSSSPSYFPYYTNY 240
            SPCSSSYGYGYGY  PSSSSPSPRGAFPVHGY HGH HGH PSSPLSSSPSYFPYYTNY
Sbjct: 181 QSPCSSSYGYGYGY--PSSSSPSPRGAFPVHGYGHGHGHGHDPSSPLSSSPSYFPYYTNY 240

Query: 241 THMQQPLFYAHMHQIATPTTGRQSPTETEGGASGSNTPNTC 281
           THMQQPLFYAHMHQIATPTTGRQSPTETEGGASGSNTPNTC
Sbjct: 241 THMQQPLFYAHMHQIATPTTGRQSPTETEGGASGSNTPNTC 279

[Close]
BLAST of Cp4.1LG11g04450 vs. NCBI nr
Match: KAG6598692.1 (putative RNA-binding protein ARP1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 535 bits (1379), Expect = 2.18e-191
Identity = 270/291 (92.78%), Postives = 270/291 (92.78%), Query Frame = 0 

Query: 1   MAENFSNTHPPPFGDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIHDKNTGKSK 60
           MAENFSNTHPPPFGDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIHDKNTGKSK
Sbjct: 1   MAENFSNTHPPPFGDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIHDKNTGKSK 60

Query: 61  GYGFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQT 120
           GYGFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQT
Sbjct: 61  GYGFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQT 120

Query: 121 ASAAAGSYGGLLTPYPPPPSPP--------PPQIMFPAYRYRSYAPNYTLPYHQAIYNPQ 180
            SAAAGSYGGLLTPYPPPPSPP        PPQIMFPAYRYRSYAPNYTLPYHQAIYNPQ
Sbjct: 121 TSAAAGSYGGLLTPYPPPPSPPYPPPPSPPPPQIMFPAYRYRSYAPNYTLPYHQAIYNPQ 180

Query: 181 LQSAQLYQ--PSPCSSSYGYGYGYGYPSSSSPSPRGAFPVHGYEHGHVHGHGPSSPLSSS 240
           LQSAQLYQ   SPCSSSYGYGYGY  PSSSSPSPRGAFPVHGY      GHGPSSPLSSS
Sbjct: 181 LQSAQLYQHQQSPCSSSYGYGYGY--PSSSSPSPRGAFPVHGY------GHGPSSPLSSS 240

Query: 241 PSYFPYYTNYTHMQQPLFYAHMHQIATPTTGRQSPTETEGGASGSNTPNTC 281
           PSYFPYYTNYTHMQQPLFYAHMHQIATPT GRQSPTETEGGASGSNTPNTC
Sbjct: 241 PSYFPYYTNYTHMQQPLFYAHMHQIATPTPGRQSPTETEGGASGSNTPNTC 283

[Close]
BLAST of Cp4.1LG11g04450 vs. NCBI nr
Match: XP_022961977.1 (RNA-binding protein 38-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 531 bits (1368), Expect = 6.41e-190
Identity = 263/281 (93.59%), Postives = 263/281 (93.59%), Query Frame = 0 

Query: 1   MAENFSNTHPPPFGDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIHDKNTGKSK 60
           MAENFSNTHPPPFGDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVII DKNTGKSK
Sbjct: 1   MAENFSNTHPPPFGDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIRDKNTGKSK 60

Query: 61  GYGFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQT 120
           GYGFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQT
Sbjct: 61  GYGFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQT 120

Query: 121 ASAAAGSYGGLLTPYPPPPSPPPPQIMFPAYRYRSYAPNYTLPYHQAIYNPQLQSAQLYQ 180
            SAAAGSYGGLLTPYPPPPSPPPPQIMFPAYRYRSYAPNYTLPYHQA         QLY 
Sbjct: 121 TSAAAGSYGGLLTPYPPPPSPPPPQIMFPAYRYRSYAPNYTLPYHQA---------QLYP 180

Query: 181 PSPCSSSYGYGYGYGYPSSSSPSPRGAFPVHGYEHGHVHGHGPSSPLSSSPSYFPYYTNY 240
            SPCSSSYGYGYGY  PSSSSPSPRGAFPVHGY HGH HGH PSSPLSSSPSYFPYYTNY
Sbjct: 181 QSPCSSSYGYGYGY--PSSSSPSPRGAFPVHGYGHGHGHGHDPSSPLSSSPSYFPYYTNY 240

Query: 241 THMQQPLFYAHMHQIATPTTGRQSPTETEGGASGSNTPNTC 281
           THMQQPLFYAHMHQIATPTTGRQSPTETEGGASGSNTPNTC
Sbjct: 241 THMQQPLFYAHMHQIATPTTGRQSPTETEGGASGSNTPNTC 270

[Close]
BLAST of Cp4.1LG11g04450 vs. NCBI nr
Match: KAG7029634.1 (putative RNA-binding protein ARP1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 508 bits (1309), Expect = 4.06e-181
Identity = 251/264 (95.08%), Postives = 252/264 (95.45%), Query Frame = 0 

Query: 1   MAENFSNTHPPPFGDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIHDKNTGKSK 60
           MAENFSNTHPPPFGDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIHDKNTGKSK
Sbjct: 1   MAENFSNTHPPPFGDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIHDKNTGKSK 60

Query: 61  GYGFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQT 120
           GYGFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQT
Sbjct: 61  GYGFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQT 120

Query: 121 ASAAAGSYGGLLTPYPPPPSPPPPQIMFPAYRYRSYAPNYTLPYHQAIYNPQLQSAQLYQ 180
            SAAAGSYGGLLTPYPPPPSPPPPQIMFPAYRYRSYAPNYTLPYHQAIYNPQLQSAQLYQ
Sbjct: 121 TSAAAGSYGGLLTPYPPPPSPPPPQIMFPAYRYRSYAPNYTLPYHQAIYNPQLQSAQLYQ 180

Query: 181 --PSPCSSSYGYGYGYGYPSSSSPSPRGAFPVHGYEHGHVHGHGPSSPLSSSPSYFPYYT 240
              SPCSSSYGYGYGY  PSSSSPSPRGAFPVHGY      GHGPSSPLSSSPSYFPYYT
Sbjct: 181 HQQSPCSSSYGYGYGY--PSSSSPSPRGAFPVHGY------GHGPSSPLSSSPSYFPYYT 240

Query: 241 NYTHMQQPLFYAHMHQIATPTTGR 262
           NYTHMQQPLFYAHMHQIATPTTG+
Sbjct: 241 NYTHMQQPLFYAHMHQIATPTTGK 256

[Close]
BLAST of Cp4.1LG11g04450 vs. ExPASy TrEMBL
Match: A0A6J1HBU2 (RNA-binding protein 38-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111462586 PE=4 SV=1)

HSP 1 Score: 557 bits (1435), Expect = 2.64e-200
Identity = 272/281 (96.80%), Postives = 272/281 (96.80%), Query Frame = 0 

Query: 1   MAENFSNTHPPPFGDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIHDKNTGKSK 60
           MAENFSNTHPPPFGDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVII DKNTGKSK
Sbjct: 1   MAENFSNTHPPPFGDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIRDKNTGKSK 60

Query: 61  GYGFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQT 120
           GYGFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQT
Sbjct: 61  GYGFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQT 120

Query: 121 ASAAAGSYGGLLTPYPPPPSPPPPQIMFPAYRYRSYAPNYTLPYHQAIYNPQLQSAQLYQ 180
            SAAAGSYGGLLTPYPPPPSPPPPQIMFPAYRYRSYAPNYTLPYHQAIYNPQLQSAQLY 
Sbjct: 121 TSAAAGSYGGLLTPYPPPPSPPPPQIMFPAYRYRSYAPNYTLPYHQAIYNPQLQSAQLYP 180

Query: 181 PSPCSSSYGYGYGYGYPSSSSPSPRGAFPVHGYEHGHVHGHGPSSPLSSSPSYFPYYTNY 240
            SPCSSSYGYGYGY  PSSSSPSPRGAFPVHGY HGH HGH PSSPLSSSPSYFPYYTNY
Sbjct: 181 QSPCSSSYGYGYGY--PSSSSPSPRGAFPVHGYGHGHGHGHDPSSPLSSSPSYFPYYTNY 240

Query: 241 THMQQPLFYAHMHQIATPTTGRQSPTETEGGASGSNTPNTC 281
           THMQQPLFYAHMHQIATPTTGRQSPTETEGGASGSNTPNTC
Sbjct: 241 THMQQPLFYAHMHQIATPTTGRQSPTETEGGASGSNTPNTC 279

[Close]
BLAST of Cp4.1LG11g04450 vs. ExPASy TrEMBL
Match: A0A6J1HBJ1 (RNA-binding protein 38-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111462586 PE=4 SV=1)

HSP 1 Score: 531 bits (1368), Expect = 3.11e-190
Identity = 263/281 (93.59%), Postives = 263/281 (93.59%), Query Frame = 0 

Query: 1   MAENFSNTHPPPFGDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIHDKNTGKSK 60
           MAENFSNTHPPPFGDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVII DKNTGKSK
Sbjct: 1   MAENFSNTHPPPFGDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIRDKNTGKSK 60

Query: 61  GYGFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQT 120
           GYGFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQT
Sbjct: 61  GYGFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQT 120

Query: 121 ASAAAGSYGGLLTPYPPPPSPPPPQIMFPAYRYRSYAPNYTLPYHQAIYNPQLQSAQLYQ 180
            SAAAGSYGGLLTPYPPPPSPPPPQIMFPAYRYRSYAPNYTLPYHQA         QLY 
Sbjct: 121 TSAAAGSYGGLLTPYPPPPSPPPPQIMFPAYRYRSYAPNYTLPYHQA---------QLYP 180

Query: 181 PSPCSSSYGYGYGYGYPSSSSPSPRGAFPVHGYEHGHVHGHGPSSPLSSSPSYFPYYTNY 240
            SPCSSSYGYGYGY  PSSSSPSPRGAFPVHGY HGH HGH PSSPLSSSPSYFPYYTNY
Sbjct: 181 QSPCSSSYGYGYGY--PSSSSPSPRGAFPVHGYGHGHGHGHDPSSPLSSSPSYFPYYTNY 240

Query: 241 THMQQPLFYAHMHQIATPTTGRQSPTETEGGASGSNTPNTC 281
           THMQQPLFYAHMHQIATPTTGRQSPTETEGGASGSNTPNTC
Sbjct: 241 THMQQPLFYAHMHQIATPTTGRQSPTETEGGASGSNTPNTC 270

[Close]
BLAST of Cp4.1LG11g04450 vs. ExPASy TrEMBL
Match: A0A6J1KAW8 (RNA-binding protein 38-like OS=Cucurbita maxima OX=3661 GN=LOC111492201 PE=4 SV=1)

HSP 1 Score: 505 bits (1300), Expect = 6.94e-180
Identity = 255/282 (90.43%), Postives = 256/282 (90.78%), Query Frame = 0 

Query: 1   MAENFSNTHPPPFGDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIHDKNTGKSK 60
           MAENFSNTHPPPFGDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIHDKNTGKSK
Sbjct: 1   MAENFSNTHPPPFGDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIHDKNTGKSK 60

Query: 61  GYGFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQT 120
           GYGFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNL T
Sbjct: 61  GYGFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLHT 120

Query: 121 ASAAAGSYGGLLTPYPPPPS-PPPPQIMFPAYRYRSYAPNYTLPYHQAIYNPQLQSAQLY 180
            SAAA S+GGLLTPYPPPPS PPPPQIMFPAYRYRSYAPNYTLPYHQ          QLY
Sbjct: 121 TSAAAASFGGLLTPYPPPPSSPPPPQIMFPAYRYRSYAPNYTLPYHQP---------QLY 180

Query: 181 QPSPCSSSYGYGYGYGYPSSSSPSPRGAFPVHGYEHGHVHGHGPSSPLSSSPSYFPYYTN 240
           Q SPCSSSYGY YGY  PSSSS SPR AFPVHGY HGH H  GPSSPLSSSPSYFPYYTN
Sbjct: 181 QQSPCSSSYGYAYGY--PSSSSQSPRVAFPVHGYGHGHAH--GPSSPLSSSPSYFPYYTN 240

Query: 241 YTHMQQPLFYAHMHQIATPTTGRQSPTETEGGASGSNTPNTC 281
           YTHMQQPLFYAHMH IATP TGRQSPTETEGGASGSNTPNTC
Sbjct: 241 YTHMQQPLFYAHMHPIATPITGRQSPTETEGGASGSNTPNTC 269

[Close]
BLAST of Cp4.1LG11g04450 vs. ExPASy TrEMBL
Match: A0A1S3BBB0 (RNA-binding protein 38-like OS=Cucumis melo OX=3656 GN=LOC103488068 PE=4 SV=1)

HSP 1 Score: 365 bits (937), Expect = 1.73e-124
Identity = 206/293 (70.31%), Postives = 221/293 (75.43%), Query Frame = 0 

Query: 2   AENFSNTHPPPF-GDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIHDKNTGKSK 61
           + NF   HPPPF GDTTWTKLFVGGLAWETQS EM +FFQQFG+ILEAVII DK+TGKSK
Sbjct: 4   SNNFPLNHPPPFAGDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTGKSK 63

Query: 62  GYGFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQT 121
           GYGFVTF+DP+SARRACANPNPIICGRRANCNIAAFGR RPPP  P   GGRNQIGNLQ+
Sbjct: 64  GYGFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPPFSPSS-GGRNQIGNLQS 123

Query: 122 AS-AAAGSYGGLLTPYPPPPSPPPPQIMFPAYRYRSYAPNYTLPYHQAIYNPQLQSAQLY 181
            S AAAGSYGGL  P+PPP      Q++FP YRYRSYAPNYT+PYHQAIYNPQ+Q  Q+Y
Sbjct: 124 TSPAAAGSYGGLRPPFPPP------QLIFPHYRYRSYAPNYTVPYHQAIYNPQIQQPQMY 183

Query: 182 QPSPC-----SSSYGYGYGYGYPSSSSPSPRGAFPVHGYEHGHVHGHGPSSPLSSSPSYF 241
           Q SP      SSSY YGYGY    SSS  PR AF VHG        H P S     PSYF
Sbjct: 184 QQSPSPSPSSSSSYYYGYGYSSSPSSSQLPRAAFSVHG--------HPPQS-----PSYF 243

Query: 242 PYYTNYTHMQQP--LFYAHMHQIATP-TTGRQSP----TETEGGASGSNTPNT 280
           PYYTNYTHMQQ   LFY  M QI TP TTG Q+P    TETE GASGSN+PNT
Sbjct: 244 PYYTNYTHMQQQAGLFYTPMPQIITPSTTGWQTPQHTPTETEAGASGSNSPNT 276

[Close]
BLAST of Cp4.1LG11g04450 vs. ExPASy TrEMBL
Match: A0A0A0LLP2 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G368990 PE=4 SV=1)

HSP 1 Score: 361 bits (927), Expect = 5.53e-123
Identity = 207/295 (70.17%), Postives = 221/295 (74.92%), Query Frame = 0 

Query: 1   MAEN--FSNTHPPPF-GDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIHDKNTG 60
           MA+N  F   HPPPF GDTTWTKLFVGGLAWETQS EM +FFQQFG+ILEAVII DK+TG
Sbjct: 1   MADNNNFPLNHPPPFAGDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTG 60

Query: 61  KSKGYGFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGN 120
           KSKGYGFVTF+DP+SARRACANPNPIICGRRANCNIAAFGR RPPP  P   GGRNQIGN
Sbjct: 61  KSKGYGFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPPLSPSS-GGRNQIGN 120

Query: 121 LQ-TASAAAGSYGGLLTPYPPPPSPPPPQIMFPAYRYRSYAPNYTLPYHQAIYNPQLQSA 180
           LQ TA AAAGSYGGL  P+PPPP      ++FP YRYRSYAPNYT+PYHQAIYNPQ+Q  
Sbjct: 121 LQSTAPAAAGSYGGLRPPFPPPP------LIFPHYRYRSYAPNYTVPYHQAIYNPQIQQP 180

Query: 181 QLYQPSPC-----SSSYGYGYGYGYPSSSSPSPRGAFPVHGYEHGHVHGHGPSSPLSSSP 240
           Q+YQ SP      SSSY Y YGY    SSS  PR AF VHG        H P S     P
Sbjct: 181 QMYQQSPSPSPSSSSSYYYSYGYSSSPSSSQLPRAAFSVHG--------HPPQS-----P 240

Query: 241 SYFPYYTNYTHMQQP-LFYAHMHQIATP-TTGRQSP----TETEGGASGSNTPNT 280
           SYFPYYTNYTHMQQ  L Y  M QI TP TTG Q+P    TETE GASGSN+PNT
Sbjct: 241 SYFPYYTNYTHMQQQGLVYTPMPQIITPSTTGWQTPQHTPTETEAGASGSNSPNT 275

[Close]
BLAST of Cp4.1LG11g04450 vs. TAIR 10
Match: AT1G78260.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 200.7 bits (509), Expect = 1.6e-51
Identity = 129/244 (52.87%), Postives = 153/244 (62.70%), Query Frame = 0 

Query: 12  PFGDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIHDKNTGKSKGYGFVTFRDPD 71
           PFGDTT+TK+FVGGLAWET +DEMR +F+QFGEILEAVII DKNTGKSKGYGFVTFR+ D
Sbjct: 10  PFGDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESD 69

Query: 72  SARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGN-LQTASAAAGSYGG 131
           SA RA A+PNP+I GR+ANCNIA+FGR RP PP      GR Q G+  Q  S    +Y G
Sbjct: 70  SATRAVADPNPVIDGRKANCNIASFGRPRPSPP-----RGRGQTGSPSQYQSGGPSTYTG 129

Query: 132 LLTPYPPPPSPPPPQIMFPAYRYRSYAPNYTLPYHQAIYNPQLQSAQLYQPSPCSSSYGY 191
           +  P PP  +   PQ+M+P+Y Y +Y P+    YHQA+YN QLQ AQ YQ         Y
Sbjct: 130 MAAPLPPAAA---PQLMYPSYGY-TYNPD-QFGYHQALYNTQLQQAQYYQ----QQQQLY 189

Query: 192 GYGYGYPSSSS----PSP-----RGAFPVHGYEHGHVHGHGPSSPLS------SSPSYFP 240
           G G   PSSS     PSP         P   Y+H H H   P +P        SSPS+  
Sbjct: 190 GGGATSPSSSGATIMPSPYYYGYSLQAPRVPYQHHH-HLPQPYNPQQHHHQRFSSPSFLV 238

[Close]
BLAST of Cp4.1LG11g04450 vs. TAIR 10
Match: AT1G78260.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 200.7 bits (509), Expect = 1.6e-51
Identity = 129/244 (52.87%), Postives = 153/244 (62.70%), Query Frame = 0 

Query: 12  PFGDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIHDKNTGKSKGYGFVTFRDPD 71
           PFGDTT+TK+FVGGLAWET +DEMR +F+QFGEILEAVII DKNTGKSKGYGFVTFR+ D
Sbjct: 10  PFGDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESD 69

Query: 72  SARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGN-LQTASAAAGSYGG 131
           SA RA A+PNP+I GR+ANCNIA+FGR RP PP      GR Q G+  Q  S    +Y G
Sbjct: 70  SATRAVADPNPVIDGRKANCNIASFGRPRPSPP-----RGRGQTGSPSQYQSGGPSTYTG 129

Query: 132 LLTPYPPPPSPPPPQIMFPAYRYRSYAPNYTLPYHQAIYNPQLQSAQLYQPSPCSSSYGY 191
           +  P PP  +   PQ+M+P+Y Y +Y P+    YHQA+YN QLQ AQ YQ         Y
Sbjct: 130 MAAPLPPAAA---PQLMYPSYGY-TYNPD-QFGYHQALYNTQLQQAQYYQ----QQQQLY 189

Query: 192 GYGYGYPSSSS----PSP-----RGAFPVHGYEHGHVHGHGPSSPLS------SSPSYFP 240
           G G   PSSS     PSP         P   Y+H H H   P +P        SSPS+  
Sbjct: 190 GGGATSPSSSGATIMPSPYYYGYSLQAPRVPYQHHH-HLPQPYNPQQHHHQRFSSPSFLV 238

[Close]
BLAST of Cp4.1LG11g04450 vs. TAIR 10
Match: AT1G22330.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 183.7 bits (465), Expect = 2.0e-46
Identity = 126/253 (49.80%), Postives = 146/253 (57.71%), Query Frame = 0 

Query: 6   SNT--HPPPFGDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIHDKNTGKSKGYG 65
           SNT  +  PFGDTT TK+FVGGLAWET +DEMR +F QFGEILEAVII DK TGKSKGYG
Sbjct: 2   SNTSYYRSPFGDTTHTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYG 61

Query: 66  FVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGN-LQTAS 125
           FVTFRD DSA RA A+PNP+I GR+ANCNIA+FGR RP  P      GR Q G+  Q   
Sbjct: 62  FVTFRDSDSATRAVADPNPVIDGRKANCNIASFGRPRPSTP-----RGRGQGGSPSQYQG 121

Query: 126 AAAGSYGGLLTPYPPPPSPPPPQIMFPAYRYRSYAPNYTLPYHQAIYNPQLQSAQLYQPS 185
               SY G+  P     +    Q+M+P+Y    Y  N    YHQA+YN QLQ AQ YQ  
Sbjct: 122 GGQSSYTGMAAPVQQAAA---AQLMYPSY---GYTYNSEYGYHQALYNAQLQQAQYYQ-- 181

Query: 186 PCSSSYGYGYGYGYPSSS-----------SPSPRGAFPVHGYEHGHVHGHGPSSP----- 240
                YG G G   PSSS           +PSPR    +H  +H   H H          
Sbjct: 182 --QQMYG-GGGATSPSSSNIMPSPYYYLQAPSPRPY--LHHQQHYQYHHHQQQQQQQQQR 236

[Close]
BLAST of Cp4.1LG11g04450 vs. TAIR 10
Match: AT1G76460.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 172.9 bits (437), Expect = 3.5e-43
Identity = 105/212 (49.53%), Postives = 134/212 (63.21%), Query Frame = 0 

Query: 12  PFGDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIHDKNTGKSKGYGFVTFRDPD 71
           PFGDTT+TK+FVGGLAWETQS+ +R  F+Q+GEILEAV+I DKNTG+SKGYGFVTFRDP+
Sbjct: 17  PFGDTTFTKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPE 76

Query: 72  SARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQTASAAAGSY--- 131
           +ARRACA+P PII GRRANCN+A+ GR RPP P  ++    N  G L+ AS   G+    
Sbjct: 77  AARRACADPTPIIDGRRANCNLASLGRPRPPLPYAVI---PNMPGRLRPASPYIGNVQGP 136

Query: 132 -GGLLTPYP---PPPSPPPPQIMFPAYRYRSYAPNYTLPYHQAIYNPQL--QSAQLY-QP 191
            G L+  YP   P P      +++P Y   +Y P Y     Q +Y+P +  Q  Q+Y  P
Sbjct: 137 RGSLIGNYPYQQPLPYNYQQGVVYP-YGVTAYGPEYMYSQSQGLYSPYMGQQYLQVYGVP 196

Query: 192 SPCSSSYGYGYGYGYPSSSSPSPRGAFPVHGY 214
              +S     Y YG  S + P+  G   V GY
Sbjct: 197 GAVNSPV---YQYGQLSQTIPNGHGYTAVQGY 221

[Close]
BLAST of Cp4.1LG11g04450 vs. TAIR 10
Match: AT1G20880.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 169.9 bits (429), Expect = 3.0e-42
Identity = 108/250 (43.20%), Postives = 139/250 (55.60%), Query Frame = 0 

Query: 12  PFGDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIHDKNTGKSKGYGFVTFRDPD 71
           PFGDTT+TK+FVGGLAWETQS+ +R  F Q+G+ILEAV+I DKNTG+SKGYGFVTFRDP+
Sbjct: 17  PFGDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPE 76

Query: 72  SARRACANPNPIICGRRANCNIAAFGRARPP--------------PPPPLLLGGRNQIGN 131
           +ARRAC +P PII GRRANCN+A+ GR+RPP              PP P        +G+
Sbjct: 77  AARRACVDPTPIIDGRRANCNLASLGRSRPPMQYAVIPHAPGRVRPPSP-------YVGS 136

Query: 132 LQTASAA-AGSYGGLLTPYPPPPSPPPPQIMFPAYRYRSYAPNYTLPYHQAIYNPQLQSA 191
           +Q+      GS+     PY  PP+    Q +   Y    Y P+Y     Q  Y P +   
Sbjct: 137 VQSPRGLHFGSH-----PYHQPPTYNYQQGVVYPYGVTPYGPDYMYSQSQGFYGPYMGQQ 196

Query: 192 QLYQPSPCSSSYGYGYGYGYPSSSSPSPRGAFPVHGYEH--GHVHGHGPSSPLSSSPSYF 245
            L       +    GY YG  S + P   G     GY H   HV   G +SP+S+  S +
Sbjct: 197 YLQVYGVPGAVNSPGYQYGQLSHTIPGAHGYTAGQGYSHPGSHVLQLGATSPMSAIQSPY 254

The following BLAST results are available for this feature:
BLAST of Cp4.1LG11g04450 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q621766.8e-2339.71RNA-binding protein 38 OS=Mus musculus OX=10090 GN=Rbm38 PE=1 SV=2[more]
Q9M1S38.8e-2335.47Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 S... [more]
Q9H0Z92.0e-2239.22RNA-binding protein 38 OS=Homo sapiens OX=9606 GN=RBM38 PE=1 SV=2[more]
Q6DIV42.0e-2240.31RNA-binding protein 38 OS=Xenopus tropicalis OX=8364 GN=rbm38 PE=2 SV=1[more]
Q76LC61.7e-2138.46RNA-binding protein 24 OS=Danio rerio OX=7955 GN=rbm24 PE=2 SV=1[more]
BLAST of Cp4.1LG11g04450 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023546076.18.79e-211100.00RNA-binding protein 38-like [Cucurbita pepo subsp. pepo][more]
XP_022961976.15.46e-20096.80RNA-binding protein 38-like isoform X1 [Cucurbita moschata][more]
KAG6598692.12.18e-19192.78putative RNA-binding protein ARP1, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022961977.16.41e-19093.59RNA-binding protein 38-like isoform X2 [Cucurbita moschata][more]
KAG7029634.14.06e-18195.08putative RNA-binding protein ARP1, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Cp4.1LG11g04450 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1HBU22.64e-20096.80RNA-binding protein 38-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC11146... [more]
A0A6J1HBJ13.11e-19093.59RNA-binding protein 38-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC11146... [more]
A0A6J1KAW86.94e-18090.43RNA-binding protein 38-like OS=Cucurbita maxima OX=3661 GN=LOC111492201 PE=4 SV=... [more]
A0A1S3BBB01.73e-12470.31RNA-binding protein 38-like OS=Cucumis melo OX=3656 GN=LOC103488068 PE=4 SV=1[more]
A0A0A0LLP25.53e-12370.17RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G368990 PE=4 SV... [more]
BLAST of Cp4.1LG11g04450 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G78260.11.6e-5152.87RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT1G78260.21.6e-5152.87RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT1G22330.12.0e-4649.80RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT1G76460.13.5e-4349.53RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT1G20880.13.0e-4243.20RNA-binding (RRM/RBD/RNP motifs) family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 20..92
e-value: 1.6E-25
score: 100.8
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 21..79
e-value: 4.2E-18
score: 65.0
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 19..96
score: 16.466022
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 3..102
e-value: 5.3E-25
score: 90.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 257..281
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 203..226
NoneNo IPR availablePANTHERPTHR11176:SF23RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEINcoord: 10..254
NoneNo IPR availableCDDcd12384RRM_RBM24_RBM38_likecoord: 19..94
e-value: 8.28873E-42
score: 136.591
IPR037366BOULE/DAZ familyPANTHERPTHR11176BOULE-RELATEDcoord: 10..254
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 9..105

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG11g04450.1Cp4.1LG11g04450.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0030154 cell differentiation
cellular_component GO:0005634 nucleus
molecular_function GO:0003729 mRNA binding
molecular_function GO:0003676 nucleic acid binding