Cp4.1LG11g03780 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG11g03780
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	60S ribosomal protein L5-like
Location	Cp4.1LG11: 2043372 .. 2047031 (-)
RNA-Seq Expression	Cp4.1LG11g03780
Synteny	Cp4.1LG11g03780

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCGACGAGGGCAAAGTCGAGACGAGCTATGTTTCAAGGTGTGTGATTCGCGTGCTTACAACCAGGGTGAGTTTATTAAGCTCGGAATAAGATAAAATAATATTTTGATGATTTAAAATTTATTAGAGACGACACAAAATTAAAAATTAATAGAAAAAAAAAAGAAATTTGTGGAATTTAGGCATTTTTAAAAGTTCATAAATTAATTTTATAATTCAACCAATAAAACAGCTCCAACTGTCAATAAATAATTTACTCCAACAGTGTAGTAAAAAGAAAAAAAAAAATCGGAACGATCTGAGCCGTTGATCACGTCGCCTTAGGGTTTATATAAATAGAAGATCCTTCGCCCGAAAAACTCCTCTGATTGCTTCGGTCGTGTCCGCGTCGCTCGTTCTCTCAGTTTACTTCAGGCCTCAGCTTCGGAGATGGTGAGTTTATGCTCAACTTCTAATGATTATTCTCTTCATTTTATAGCGTTCTTGAATCTCAGATGAATTTTGGCTTTCAGCCAAGACAATGGTACAGAAGTTAGCTGCATTGCATACTCATTTTCCGTTCTTAAACAAATTTCACGAGGATCTGAACGCTGCATTTGCTTTCATTTCGGGAATTACATGCATTGAATTGATATGTGCCGTAGTTTAATTGAGTTGTTTTCGAAAATATTGTTACTCATTTACAATTTTTGTTTCTGAGTTTTTAATTCAAGTATATAGGAATTCCAAGTCGTATATATAGTTCTATGTGAATTGTCCTTAAGATGCTTGAGACCTTCAAACGTTTTTGGGAATGATTGAAGCAAGTTACTGCCGTCGTTTCTCTTAATTTTGTTATCAGCGTTCGTATCATTATTGCTCCGAGTAATCGACGTGATTTAATAATTGTTTTTTGCAGGCTTTCGCAAAAGCTCAAAAGACGAAAGCGTACTTCAAACGCTACCAGGTCAAATACAAGAGAAGAAGAGGTATTTCCAATCTCTTTTTTGTTTATCACGATGAATCATATTTGAATAGTTAATTGTCGGCTACTGATAGTGCTCTCTTCTGATAATGTATAGAGGGCAAGACCGATTATCGGGCCAGGATTCGCCTCATTAATCAAGACAAGAACAAGTACAATACTCCCAAATACCGCTATGTGATTAGATTTGTATCCTCATTCAGTTGTCTAAGTAGTGCAAGTGGTCTTTTGTTTTATTTTCCAGTTATTTCTTGATGAACTTGCAATGAGTGGTTTTGGTCTTCCTTAATTTTCCAGTCCTGAATTTTCTGTAACTACCTTTGAATACGTTTGCCGTTACTATCTATCATTACTTTTTTATGAGTATTTTTTATTATGAAGGGTGAGCTGTAGTTATGTTCACTTGAGAAACGGGAACCTTAACATTCATATCTAGACTAACAAGGATATTACCGCACAAGTAGTATCTTCTAGCATTGCTGGTGACATGGTTCTTGCCGCCGCTTATTCTCATGAGTTGCCTCATTATGGTCTTGATGTTGGTCTAACAAATTATGCAGCAGGTACTACTCTTGCAATGTAAGTTTCTCGGGGGCTGAGTTTTTTGATCTTTTACTAACTTCTTGTCCTTATCTTCATTTGTCCGGAATGGTGTATGACACTTGTTTAGCCTATTGTACCGGGCTTCTCTTGGCTCGCCGTGTCTTGAAGAAGCTTGAGATGGATGATGAGTACGTGGGTAATCTTGAGGTATCCTATCCACGCCCTCCATCACCATATAGAAAAGAGAAATTGAAAGCAAAATTAAATGAAGTTCACCTCTTCTGTTATGACTTATGCCCCTTCAATTAAAACTTTTACCGACTGAAAGTGGTTTTATAAATCAGGTTTCTGGAGAGGATTTCTCTGTGGAACCTACAGATAGCCGAAGGCCTTTCAGAGCCCTCCTTGATGTTGGTCTAGTCCGAACAACAACAGGAAATCGTGTTTTTGGTGCCCTCAAGGTATATTTAGTTAGTCCATTTAATATCAGCTGCAAGATCCGTCTTTTTTCTTCTATTTACGGTAGTTTTATACGGTTTGGTCAACGTTACATGAGTGGTTTTAGCTATTTTTTTAAACCATGGCTGGATACAAAATGAGTAATAATATATCTTGTTAAACCAATTCTTTGTATGTAACATATGTATAAGGGTGTGTTTGACGCACATATTTCTGTATTTTGTTCTAACATCTGGTCAGTCCACGTTTGAGCTTCAGTATTCGTGATAATTTAACTGCTGATTATAGTTACGATGAGAAGTTTTTAAGTTTGATGTAGTAACTGATTGCATCATAATCTGGAAGGTTGCATATTTTGTACTGGGAAACTTTATCTAACATGTATCCGCGTTCTTTATAATGTCGGTGGCTCTTGGTATCTTTTATCAAGCTGTTGTATTTTTGGAGACTGAAGCTATGAATTTTCACGTCACACAGGGAGCTTTAGATGGTGGATTGGATGTTCCACACAGTGTCAAGAGGTTTGCTGGTTTTTCAAAGGACAGCAAGGAGCTCGATGCGGATGTTCATCGTAAATACATATTTGGAGGGCACGTCGCAGCCTATATGAGGGTAAACGTTCAGAATTTAATATTAGAGCATAGTGAAATTAGAATAGACATTAGTATTCAGTCATGAAGGATTGTGTTCACTCACGAATTGTATTCCTCAGTCCTTGATGGAGGATGAGCCGGAGAAGTATCAATCTCAATTCAGTGATTATATCAAGAAAGGGATCGAGCCTGACAACATCGAGGAGTTATTGAAAAAAGTTCATTCTGCAATTCGTACCGAACCACTTGCAAAGACGACTGTGAAGCAACCACCAAAAGAGGAGCACAAGAGGTTAATGGCTAACTCTCTTTGTTTCTCATGAATGAACTATCATCTTAGTTTCTGGTTTTCCATACTTACGCGGTTCGTCCGATAGGTATAACCTGAAGAAGCTCACATATGATGAAAGGAGGGCCAAGTTGGTCGAGCGTTTGAATGCATTGAATTCTGCTGCTGGAGCTGATGACGATGACGATGAAGACGATGAAGAGTGATTCAACTCGGTTGCCTGCAATTGCAACACAGTGTATTTCAACCTATTCCATCATTACAAACCATTTAGTTTAGGTAATCCGTAGATTGTCTTCTTTTTTTTCAGTCTCCCTGAGGCGATTTTGCAGCATCTTAAGTGTTAGTTTTAAGCTTGCAGAGGTCAATTTTGAGATTCTGAGTTCGTTTATACCGTATTTACATGCTGTTGGCTGTTGGTTGGATAGATTGATTGATGCTTGTCAGTGTTCTAGTATTCACAAAATTTAGAGGAACTATCACTTCCTTTAGTATATTTCATTTAAAGTATAGTTTCAGTTTTTGTTTTTTCCATTATTTTTTTCTTTTTAATTCATTTAAAAGATGGTTGGGTAACGGACATCGTTATTTAAGGCATGTTGTCTGTGGTTGCGTGTTTGATATCTTGTTATACTTGTCTCAGGCATGTTGTCTATGGTCGTATGTTCGTTTCAAAATTCCTCAAAATGTACACAAGAGGATTTGACTGGTTGTCAATTCTTTCAATTCGAGATATGTGCTATCAAGGTTATGCTTGTTGCTTATTCTATTCCTTCGTCTGCGATTGTGACATGTGGCGTTTCTCCTTTT

mRNA sequence

ATGATCGACGAGGGCAAAGTCGAGACGAGCTATGTTTCAAGGTGTGTGATTCGCGTGCTTACAACCAGGGCTTTCGCAAAAGCTCAAAAGACGAAAGCGTACTTCAAACGCTACCAGGTCAAATACAAGAGAAGAAGAGAGGGCAAGACCGATTATCGGGCCAGGATTCGCCTCATTAATCAAGACAAGAACAAGTACAATACTCCCAAATACCGCTATGTGATTAGATTTACTAACAAGGATATTACCGCACAAGTAGTATCTTCTAGCATTGCTGGTGACATGGTTCTTGCCGCCGCTTATTCTCATGAGTTGCCTCATTATGGTCTTGATGTTGGTCTAACAAATTATGCAGCAGCCTATTGTACCGGGCTTCTCTTGGCTCGCCGTGTCTTGAAGAAGCTTGAGATGGATGATGAGTACGTGGGTAATCTTGAGGGAGCTTTAGATGGTGGATTGGATGTTCCACACAGTGTCAAGAGGTTTGCTGGTTTTTCAAAGGACAGCAAGGAGCTCGATGCGGATGTTCATCGTAAATACATATTTGGAGGGCACGTCGCAGCCTATATGAGGTCCTTGATGGAGGATGAGCCGGAGAAGTATCAATCTCAATTCAGTGATTATATCAAGAAAGGGATCGAGCCTGACAACATCGAGGAGTTATTGAAAAAAGTTCATTCTGCAATTCGTACCGAACCACTTGCAAAGACGACTGTGAAGCAACCACCAAAAGAGGAGCACAAGAGGTATAACCTGAAGAAGCTCACATATGATGAAAGGAGGGCCAAGTTGGTCGAGCGTTTGAATGCATTGAATTCTGCTGCTGGAGCTGATGACGATGACGATGAAGACGATGAAGAGTGATTCAACTCGGTTGCCTGCAATTGCAACACAGTGTATTTCAACCTATTCCATCATTACAAACCATTTAGTTTAGGCATGTTGTCTATGGTCGTATGTTCGTTTCAAAATTCCTCAAAATGTACACAAGAGGATTTGACTGGTTGTCAATTCTTTCAATTCGAGATATGTGCTATCAAGGTTATGCTTGTTGCTTATTCTATTCCTTCGTCTGCGATTGTGACATGTGGCGTTTCTCCTTTT

Coding sequence (CDS)

ATGATCGACGAGGGCAAAGTCGAGACGAGCTATGTTTCAAGGTGTGTGATTCGCGTGCTTACAACCAGGGCTTTCGCAAAAGCTCAAAAGACGAAAGCGTACTTCAAACGCTACCAGGTCAAATACAAGAGAAGAAGAGAGGGCAAGACCGATTATCGGGCCAGGATTCGCCTCATTAATCAAGACAAGAACAAGTACAATACTCCCAAATACCGCTATGTGATTAGATTTACTAACAAGGATATTACCGCACAAGTAGTATCTTCTAGCATTGCTGGTGACATGGTTCTTGCCGCCGCTTATTCTCATGAGTTGCCTCATTATGGTCTTGATGTTGGTCTAACAAATTATGCAGCAGCCTATTGTACCGGGCTTCTCTTGGCTCGCCGTGTCTTGAAGAAGCTTGAGATGGATGATGAGTACGTGGGTAATCTTGAGGGAGCTTTAGATGGTGGATTGGATGTTCCACACAGTGTCAAGAGGTTTGCTGGTTTTTCAAAGGACAGCAAGGAGCTCGATGCGGATGTTCATCGTAAATACATATTTGGAGGGCACGTCGCAGCCTATATGAGGTCCTTGATGGAGGATGAGCCGGAGAAGTATCAATCTCAATTCAGTGATTATATCAAGAAAGGGATCGAGCCTGACAACATCGAGGAGTTATTGAAAAAAGTTCATTCTGCAATTCGTACCGAACCACTTGCAAAGACGACTGTGAAGCAACCACCAAAAGAGGAGCACAAGAGGTATAACCTGAAGAAGCTCACATATGATGAAAGGAGGGCCAAGTTGGTCGAGCGTTTGAATGCATTGAATTCTGCTGCTGGAGCTGATGACGATGACGATGAAGACGATGAAGAGTGA

Protein sequence

MIDEGKVETSYVSRCVIRVLTTRAFAKAQKTKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRYVIRFTNKDITAQVVSSSIAGDMVLAAAYSHELPHYGLDVGLTNYAAAYCTGLLLARRVLKKLEMDDEYVGNLEGALDGGLDVPHSVKRFAGFSKDSKELDADVHRKYIFGGHVAAYMRSLMEDEPEKYQSQFSDYIKKGIEPDNIEELLKKVHSAIRTEPLAKTTVKQPPKEEHKRYNLKKLTYDERRAKLVERLNALNSAAGADDDDDEDDEE

Homology

[Close]

BLAST of Cp4.1LG11g03780 vs. ExPASy Swiss-Prot
Match: Q6UNT2 (60S ribosomal protein L5 OS=Cucumis sativus OX=3659 GN=RPL5 PE=2 SV=1)

HSP 1 Score: 404.8 bits (1039), Expect = 8.0e-112
Identity = 214/302 (70.86%), Postives = 240/302 (79.47%), Query Frame = 0


Query: 24  AFAKAQKTKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRYVIRFTNKDIT 83
           AFAKAQKTKAYFKRYQVK+KRRREGKTDYRARIRLINQDKNKYNTPKYR+V+R +NKDIT
Sbjct: 2   AFAKAQKTKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRTSNKDIT 61

Query: 84  AQVVSSSIAGDMVLAAAYSHELPHYGLDVGLTNYAAAYCTGLLLARRVLKKLEMDDEYVG 143
           AQ++S+SIAGD+VLA+AYSHELP YGL+VGLTNYAAAYCTGLLLARRVLK LEMD EY G
Sbjct: 62  AQIISASIAGDLVLASAYSHELPQYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEG 121

Query: 144 NLE---------------------------------------GALDGGLDVPHSVKRFAG 203
           N+E                                       GALDGGLD+PHS KRFAG
Sbjct: 122 NVEATGEDYSVEPADTRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAG 181

Query: 204 FSKDSKELDADVHRKYIFGGHVAAYMRSLMEDEPEKYQSQFSDYIKKGIEPDNIEELLKK 263
           ++K+ ++LD +VHRKYIFGGHVAAYMR+LMEDEPEKYQS FS+YIKKGIE D +E L KK
Sbjct: 182 YAKNGQQLDVEVHRKYIFGGHVAAYMRTLMEDEPEKYQSHFSEYIKKGIEADELEGLYKK 241

Query: 264 VHSAIRTEPLAKTTVKQPPKEEHKRYNLKKLTYDERRAKLVERLNALNSAAGADDDDDED 287
           VH+AIR  P+AK + K  PK  HKRYNLKKLTYDER+A+LVERLNALNSAA  DDDDDED
Sbjct: 242 VHAAIRANPIAKKSDKPQPK-AHKRYNLKKLTYDERKARLVERLNALNSAADGDDDDDED 301

[Close]

BLAST of Cp4.1LG11g03780 vs. ExPASy Swiss-Prot
Match: A2WXX3 (60S ribosomal protein L5-1 OS=Oryza sativa subsp. indica OX=39946 GN=RPL5A PE=3 SV=2)

HSP 1 Score: 377.9 bits (969), Expect = 1.0e-103
Identity = 196/303 (64.69%), Postives = 235/303 (77.56%), Query Frame = 0


Query: 25  FAKAQKTKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRYVIRFTNKDITA 84
           F K QKT AY+KR+QVK+KRRR+GKTDYRARIRL NQDKNKYNTPKYR+V+RFTNKDITA
Sbjct: 4   FVKTQKTNAYYKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFVVRFTNKDITA 63

Query: 85  QVVSSSIAGDMVLAAAYSHELPHYGLDVGLTNYAAAYCTGLLLARRVLKKLEMDDEYVGN 144
           Q+V ++IAGD+V+AAAYSHELP YGL+VGLTNYAAAYCTGLLLARRVLK   +D EY GN
Sbjct: 64  QIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKLRGLDQEYEGN 123

Query: 145 LE---------------------------------------GALDGGLDVPHSVKRFAGF 204
           +E                                       GALDGGLD+PHS KRFAGF
Sbjct: 124 IEATGEDYYVEPADERRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGF 183

Query: 205 SKDSKELDADVHRKYIFGGHVAAYMRSLMEDEPEKYQSQFSDYIKKGIEPDNIEELLKKV 264
            KD K+LD+D+HRKYI+GGHVA YMRS+ E+EPEK+Q+ FS+Y+KKGI+ D +E L KKV
Sbjct: 184 KKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEKFQAHFSEYLKKGIDADGMEALYKKV 243

Query: 265 HSAIRTEP-LAKTTVKQPPKEEHKRYNLKKLTYDERRAKLVERLNALNSAAGADDDDDED 288
           H+AIR +P +AK+T K+P    HKRYNLKKLTY++R+A LVERLNALNS+AGADDDD+E+
Sbjct: 244 HAAIRADPTMAKSTKKEP--ATHKRYNLKKLTYEQRKASLVERLNALNSSAGADDDDEEE 303

[Close]

BLAST of Cp4.1LG11g03780 vs. ExPASy Swiss-Prot
Match: Q0JGY1 (60S ribosomal protein L5-1 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL5A PE=2 SV=1)

HSP 1 Score: 376.3 bits (965), Expect = 3.0e-103
Identity = 196/303 (64.69%), Postives = 234/303 (77.23%), Query Frame = 0


Query: 25  FAKAQKTKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRYVIRFTNKDITA 84
           F K QKT AY KR+QVK+KRRR+GKTDYRARIRL NQDKNKYNTPKYR+V+RFTNKDITA
Sbjct: 4   FVKTQKTNAYHKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFVVRFTNKDITA 63

Query: 85  QVVSSSIAGDMVLAAAYSHELPHYGLDVGLTNYAAAYCTGLLLARRVLKKLEMDDEYVGN 144
           Q+V ++IAGD+V+AAAYSHELP YGL+VGLTNYAAAYCTGLLLARRVLK   +D EY GN
Sbjct: 64  QIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKLRGLDQEYEGN 123

Query: 145 LE---------------------------------------GALDGGLDVPHSVKRFAGF 204
           +E                                       GALDGGLD+PHS KRFAGF
Sbjct: 124 IEATGEDYYVEPADERRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGF 183

Query: 205 SKDSKELDADVHRKYIFGGHVAAYMRSLMEDEPEKYQSQFSDYIKKGIEPDNIEELLKKV 264
            KD K+LD+D+HRKYI+GGHVA YMRS+ E+EPEK+Q+ FS+Y+KKGI+ D +E L KKV
Sbjct: 184 KKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEKFQAHFSEYLKKGIDADGMEALYKKV 243

Query: 265 HSAIRTEP-LAKTTVKQPPKEEHKRYNLKKLTYDERRAKLVERLNALNSAAGADDDDDED 288
           H+AIR +P +AK+T K+P    HKRYNLKKLTY++R+A LVERLNALNS+AGADDDD+E+
Sbjct: 244 HAAIRADPTMAKSTKKEP--ATHKRYNLKKLTYEQRKASLVERLNALNSSAGADDDDEEE 303

[Close]

BLAST of Cp4.1LG11g03780 vs. ExPASy Swiss-Prot
Match: Q8L4L4 (60S ribosomal protein L5-2 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL5B PE=2 SV=2)

HSP 1 Score: 376.3 bits (965), Expect = 3.0e-103
Identity = 196/303 (64.69%), Postives = 234/303 (77.23%), Query Frame = 0


Query: 25  FAKAQKTKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRYVIRFTNKDITA 84
           F K QKT AYFKR+QVK+KRRR+GKTDYRARIRL NQDKNKYNTPKYR+V+RFTNKDITA
Sbjct: 4   FVKTQKTHAYFKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFVVRFTNKDITA 63

Query: 85  QVVSSSIAGDMVLAAAYSHELPHYGLDVGLTNYAAAYCTGLLLARRVLKKLEMDDEYVGN 144
           Q+V ++IAGD+V+AAAYSHELP YGL+VGLTNYAAAYCTGLLLARRVL    +D EY GN
Sbjct: 64  QIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLTLRGLDQEYEGN 123

Query: 145 LE---------------------------------------GALDGGLDVPHSVKRFAGF 204
           +E                                       GALDGGLD+PHS KRFAGF
Sbjct: 124 VEATGEDYYVEPADERRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGF 183

Query: 205 SKDSKELDADVHRKYIFGGHVAAYMRSLMEDEPEKYQSQFSDYIKKGIEPDNIEELLKKV 264
            KD K+LD+D+HRKYI+GGHVA YMRS+ E+EPEK+Q+ FS+Y+KKGI+ D +E L KKV
Sbjct: 184 KKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEKFQAHFSEYLKKGIDADGMESLYKKV 243

Query: 265 HSAIRTEP-LAKTTVKQPPKEEHKRYNLKKLTYDERRAKLVERLNALNSAAGADDDDDED 288
           H+AIR +P +AK+T K+P    HKRYNLKKLTY++R+A LVERLNALNS+AGADDDD+E+
Sbjct: 244 HAAIRADPTMAKSTKKEP--ATHKRYNLKKLTYEQRKASLVERLNALNSSAGADDDDEEE 303

[Close]

BLAST of Cp4.1LG11g03780 vs. ExPASy Swiss-Prot
Match: Q8LBI1 (60S ribosomal protein L5-1 OS=Arabidopsis thaliana OX=3702 GN=RPL5A PE=1 SV=2)

HSP 1 Score: 371.7 bits (953), Expect = 7.5e-102
Identity = 197/302 (65.23%), Postives = 230/302 (76.16%), Query Frame = 0


Query: 25  FAKAQKTKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRYVIRFTNKDITA 84
           F K+ K+ AYFKRYQVK++RRR+GKTDYRARIRLINQDKNKYNTPKYR+V+RFTNKDI A
Sbjct: 3   FVKSTKSNAYFKRYQVKFRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIVA 62

Query: 85  QVVSSSIAGDMVLAAAYSHELPHYGLDVGLTNYAAAYCTGLLLARRVLKKLEMDDEYVGN 144
           Q+VS+SIAGD+V A+AY+HELP YGL VGLTNYAAAYCTGLLLARRVLK LEMDDEY GN
Sbjct: 63  QIVSASIAGDIVKASAYAHELPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGN 122

Query: 145 LE---------------------------------------GALDGGLDVPHSVKRFAGF 204
           +E                                       GALDGGLD+PHS KRFAGF
Sbjct: 123 VEATGEDFSVEPTDSRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGF 182

Query: 205 SKDSKELDADVHRKYIFGGHVAAYMRSLMEDEPEKYQSQFSDYIKKGIEPDNIEELLKKV 264
            K++K+LDA++HR YI+GGHV+ YM+ L EDEPEK Q+ FS YIKKG+E ++IEEL KKV
Sbjct: 183 HKENKQLDAEIHRNYIYGGHVSNYMKLLGEDEPEKLQTHFSAYIKKGVEAESIEELYKKV 242

Query: 265 HSAIRTEPLAKTTVKQPPKEEHKRYNLKKLTYDERRAKLVERLNALNSAAGADDDDDEDD 288
           H+AIR +P  K TVK  PK +HKRYNLKKLTY+ER+ KL+ER+ ALN A G  DDDDEDD
Sbjct: 243 HAAIRADPNPKKTVKPAPK-QHKRYNLKKLTYEERKNKLIERVKALNGAGG--DDDDEDD 301

[Close]

BLAST of Cp4.1LG11g03780 vs. NCBI nr
Match: KAG7029556.1 (60S ribosomal protein L5, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 509 bits (1312), Expect = 4.31e-180
Identity = 278/344 (80.81%), Postives = 283/344 (82.27%), Query Frame = 0


Query: 1   MIDEGKVETSYVSRCVIRVLTTRAFAKAQKTKAYFKRYQVKYKRRREGKTDYRARIRLIN 60
           M+DEGKVE  YVSRCVI VLTTRAFAKAQKTKAYFKRYQVKYKRRREGKTDYRARIRLIN
Sbjct: 1   MMDEGKVEAGYVSRCVICVLTTRAFAKAQKTKAYFKRYQVKYKRRREGKTDYRARIRLIN 60

Query: 61  QDKNKYNTPKYRYVIRF------------------TNKDITAQVVSSSIAGDMVLAAAYS 120
           QDKNKYNTPKYR+VIRF                  TNKDITAQVVSSSIAGDMVLAAAYS
Sbjct: 61  QDKNKYNTPKYRFVIRFVSSFRCLSSASGLLCYFPTNKDITAQVVSSSIAGDMVLAAAYS 120

Query: 121 HELPHYGLDVGLTNYAAAYCTGLLLARRVLKKLEMDDEYVGNLE---------------- 180
           HELPHYGLDVGLTNYAAAYCTGLLLARRVLKKLEMDDEYVGNLE                
Sbjct: 121 HELPHYGLDVGLTNYAAAYCTGLLLARRVLKKLEMDDEYVGNLEVSGEDFSVEPTDSRRP 180

Query: 181 -----------------------GALDGGLDVPHSVKRFAGFSKDSKELDADVHRKYIFG 240
                                  GALDGGLDVPHSVKRFAGFSKDSKELDADVHRKYIFG
Sbjct: 181 FRALLDVGLVRTTTGNRVFGALKGALDGGLDVPHSVKRFAGFSKDSKELDADVHRKYIFG 240

Query: 241 GHVAAYMRSLMEDEPEKYQSQFSDYIKKGIEPDNIEELLKKVHSAIRTEPLAKTTVKQPP 287
           GHVAAYMRSLMEDEPEKYQSQFSDYIKKGIEPDNIEELLKKVHSAIRTEPLAKTTVKQPP
Sbjct: 241 GHVAAYMRSLMEDEPEKYQSQFSDYIKKGIEPDNIEELLKKVHSAIRTEPLAKTTVKQPP 300

[Close]

BLAST of Cp4.1LG11g03780 vs. NCBI nr
Match: XP_023547082.1 (60S ribosomal protein L5-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 496 bits (1276), Expect = 2.97e-175
Identity = 264/303 (87.13%), Postives = 264/303 (87.13%), Query Frame = 0


Query: 24  AFAKAQKTKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRYVIRFTNKDIT 83
           AFAKAQKTKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRYVIRFTNKDIT
Sbjct: 2   AFAKAQKTKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRYVIRFTNKDIT 61

Query: 84  AQVVSSSIAGDMVLAAAYSHELPHYGLDVGLTNYAAAYCTGLLLARRVLKKLEMDDEYVG 143
           AQVVSSSIAGDMVLAAAYSHELPHYGLDVGLTNYAAAYCTGLLLARRVLKKLEMDDEYVG
Sbjct: 62  AQVVSSSIAGDMVLAAAYSHELPHYGLDVGLTNYAAAYCTGLLLARRVLKKLEMDDEYVG 121

Query: 144 NLE---------------------------------------GALDGGLDVPHSVKRFAG 203
           NLE                                       GALDGGLDVPHSVKRFAG
Sbjct: 122 NLEVSGEDFSVEPTDSRRPFRALLDVGLVRTTTGNRVFGALKGALDGGLDVPHSVKRFAG 181

Query: 204 FSKDSKELDADVHRKYIFGGHVAAYMRSLMEDEPEKYQSQFSDYIKKGIEPDNIEELLKK 263
           FSKDSKELDADVHRKYIFGGHVAAYMRSLMEDEPEKYQSQFSDYIKKGIEPDNIEELLKK
Sbjct: 182 FSKDSKELDADVHRKYIFGGHVAAYMRSLMEDEPEKYQSQFSDYIKKGIEPDNIEELLKK 241

Query: 264 VHSAIRTEPLAKTTVKQPPKEEHKRYNLKKLTYDERRAKLVERLNALNSAAGADDDDDED 287
           VHSAIRTEPLAKTTVKQPPKEEHKRYNLKKLTYDERRAKLVERLNALNSAAGADDDDDED
Sbjct: 242 VHSAIRTEPLAKTTVKQPPKEEHKRYNLKKLTYDERRAKLVERLNALNSAAGADDDDDED 301

[Close]

BLAST of Cp4.1LG11g03780 vs. NCBI nr
Match: KAG6598618.1 (60S ribosomal protein L5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 484 bits (1246), Expect = 1.14e-170
Identity = 259/303 (85.48%), Postives = 263/303 (86.80%), Query Frame = 0


Query: 24  AFAKAQKTKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRYVIRFTNKDIT 83
           AFAKAQKTKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYR+VIRFTNKDIT
Sbjct: 2   AFAKAQKTKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVIRFTNKDIT 61

Query: 84  AQVVSSSIAGDMVLAAAYSHELPHYGLDVGLTNYAAAYCTGLLLARRVLKKLEMDDEYVG 143
           AQVVSSSIAGDMVLAAAYSHELPHYGLDVGLTNYAAAYCTGLLLARRVLKKLEMDDEYVG
Sbjct: 62  AQVVSSSIAGDMVLAAAYSHELPHYGLDVGLTNYAAAYCTGLLLARRVLKKLEMDDEYVG 121

Query: 144 NLE---------------------------------------GALDGGLDVPHSVKRFAG 203
           NLE                                       GALDGGLDVPHSVKRFAG
Sbjct: 122 NLEVSGEDFSVEPTDSRRPFRALLDVGLVRTTTGNRVFGALKGALDGGLDVPHSVKRFAG 181

Query: 204 FSKDSKELDADVHRKYIFGGHVAAYMRSLMEDEPEKYQSQFSDYIKKGIEPDNIEELLKK 263
           FSKDSKELDADVHRKYIFGGHVAAYMRSLMEDEPEKYQSQFSDYIKKGIEPDNIEELLKK
Sbjct: 182 FSKDSKELDADVHRKYIFGGHVAAYMRSLMEDEPEKYQSQFSDYIKKGIEPDNIEELLKK 241

Query: 264 VHSAIRTEPLAKTTVKQPPKEEHKRYNLKKLTYDERRAKLVERLNALNSAAGADDDDDED 287
           VHSAIRTEPLAKTTVKQPPKE HKRYNLKKLTYDERRAKLVERLNALNSAAGADDDDD+D
Sbjct: 242 VHSAIRTEPLAKTTVKQPPKE-HKRYNLKKLTYDERRAKLVERLNALNSAAGADDDDDDD 301

[Close]

BLAST of Cp4.1LG11g03780 vs. NCBI nr
Match: XP_022961788.1 (60S ribosomal protein L5-like [Cucurbita moschata])

HSP 1 Score: 481 bits (1238), Expect = 1.69e-169
Identity = 258/302 (85.43%), Postives = 261/302 (86.42%), Query Frame = 0


Query: 24  AFAKAQKTKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRYVIRFTNKDIT 83
           AFAKAQKTKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYR+VIRFTNKDIT
Sbjct: 2   AFAKAQKTKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVIRFTNKDIT 61

Query: 84  AQVVSSSIAGDMVLAAAYSHELPHYGLDVGLTNYAAAYCTGLLLARRVLKKLEMDDEYVG 143
           AQVVSSSIAGDMVLAAAYSHELPHYGLDVGLTNYAAAYCTGLLLARRVLKKLEMDDEYVG
Sbjct: 62  AQVVSSSIAGDMVLAAAYSHELPHYGLDVGLTNYAAAYCTGLLLARRVLKKLEMDDEYVG 121

Query: 144 NLE---------------------------------------GALDGGLDVPHSVKRFAG 203
           NLE                                       GALDGGLDVPHSVKRFAG
Sbjct: 122 NLEVSGEDFSVEPTDSRRPFRALLDVGLVRTTTGNRVFGALKGALDGGLDVPHSVKRFAG 181

Query: 204 FSKDSKELDADVHRKYIFGGHVAAYMRSLMEDEPEKYQSQFSDYIKKGIEPDNIEELLKK 263
           FSKDSKELDADVHRKYIFGGHVAAYMRSLMEDEPEKYQSQFSDYIKKGIEPDNIEELLKK
Sbjct: 182 FSKDSKELDADVHRKYIFGGHVAAYMRSLMEDEPEKYQSQFSDYIKKGIEPDNIEELLKK 241

Query: 264 VHSAIRTEPLAKTTVKQPPKEEHKRYNLKKLTYDERRAKLVERLNALNSAAGADDDDDED 286
           VHSAIRTEPLAKTTVKQPPK  HKRYNLKKLTYDERRAKLVERLNALNSAAGADDDDD+D
Sbjct: 242 VHSAIRTEPLAKTTVKQPPKG-HKRYNLKKLTYDERRAKLVERLNALNSAAGADDDDDDD 301

[Close]

BLAST of Cp4.1LG11g03780 vs. NCBI nr
Match: XP_022997223.1 (60S ribosomal protein L5-like [Cucurbita maxima])

HSP 1 Score: 478 bits (1231), Expect = 2.20e-168
Identity = 255/303 (84.16%), Postives = 261/303 (86.14%), Query Frame = 0


Query: 24  AFAKAQKTKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRYVIRFTNKDIT 83
           AFAKAQKTKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYR+VIRFTNKDIT
Sbjct: 2   AFAKAQKTKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVIRFTNKDIT 61

Query: 84  AQVVSSSIAGDMVLAAAYSHELPHYGLDVGLTNYAAAYCTGLLLARRVLKKLEMDDEYVG 143
           AQ+VSSSIAGDMVLAAAYSHELPHYGLDVGLTNYAAAYCTGLLLARRVLKKLEMDDEYVG
Sbjct: 62  AQIVSSSIAGDMVLAAAYSHELPHYGLDVGLTNYAAAYCTGLLLARRVLKKLEMDDEYVG 121

Query: 144 NLE---------------------------------------GALDGGLDVPHSVKRFAG 203
           NLE                                       GALDGGLDVPHSVKRFAG
Sbjct: 122 NLEVSGEDFSVEPTDSRRPFRALLDVGLVRTTTGNRVFGALKGALDGGLDVPHSVKRFAG 181

Query: 204 FSKDSKELDADVHRKYIFGGHVAAYMRSLMEDEPEKYQSQFSDYIKKGIEPDNIEELLKK 263
           FSKDSKELDADVHRKYIFGGH+AAYMRSLMEDEPEKYQSQFSDYIKKGIEPDNIEELLKK
Sbjct: 182 FSKDSKELDADVHRKYIFGGHIAAYMRSLMEDEPEKYQSQFSDYIKKGIEPDNIEELLKK 241

Query: 264 VHSAIRTEPLAKTTVKQPPKEEHKRYNLKKLTYDERRAKLVERLNALNSAAGADDDDDED 287
           VHSAIRTEPLAKTTVKQP KE HKRYNLKKLTYDERR KLVERLNALNSAAGADDDDD+D
Sbjct: 242 VHSAIRTEPLAKTTVKQPRKE-HKRYNLKKLTYDERRVKLVERLNALNSAAGADDDDDDD 301

[Close]

BLAST of Cp4.1LG11g03780 vs. ExPASy TrEMBL
Match: A0A6J1HCU2 (60S ribosomal protein L5-like OS=Cucurbita moschata OX=3662 GN=LOC111462450 PE=3 SV=1)

HSP 1 Score: 481 bits (1238), Expect = 8.20e-170
Identity = 258/302 (85.43%), Postives = 261/302 (86.42%), Query Frame = 0


Query: 24  AFAKAQKTKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRYVIRFTNKDIT 83
           AFAKAQKTKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYR+VIRFTNKDIT
Sbjct: 2   AFAKAQKTKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVIRFTNKDIT 61

Query: 84  AQVVSSSIAGDMVLAAAYSHELPHYGLDVGLTNYAAAYCTGLLLARRVLKKLEMDDEYVG 143
           AQVVSSSIAGDMVLAAAYSHELPHYGLDVGLTNYAAAYCTGLLLARRVLKKLEMDDEYVG
Sbjct: 62  AQVVSSSIAGDMVLAAAYSHELPHYGLDVGLTNYAAAYCTGLLLARRVLKKLEMDDEYVG 121

Query: 144 NLE---------------------------------------GALDGGLDVPHSVKRFAG 203
           NLE                                       GALDGGLDVPHSVKRFAG
Sbjct: 122 NLEVSGEDFSVEPTDSRRPFRALLDVGLVRTTTGNRVFGALKGALDGGLDVPHSVKRFAG 181

Query: 204 FSKDSKELDADVHRKYIFGGHVAAYMRSLMEDEPEKYQSQFSDYIKKGIEPDNIEELLKK 263
           FSKDSKELDADVHRKYIFGGHVAAYMRSLMEDEPEKYQSQFSDYIKKGIEPDNIEELLKK
Sbjct: 182 FSKDSKELDADVHRKYIFGGHVAAYMRSLMEDEPEKYQSQFSDYIKKGIEPDNIEELLKK 241

Query: 264 VHSAIRTEPLAKTTVKQPPKEEHKRYNLKKLTYDERRAKLVERLNALNSAAGADDDDDED 286
           VHSAIRTEPLAKTTVKQPPK  HKRYNLKKLTYDERRAKLVERLNALNSAAGADDDDD+D
Sbjct: 242 VHSAIRTEPLAKTTVKQPPKG-HKRYNLKKLTYDERRAKLVERLNALNSAAGADDDDDDD 301

[Close]

BLAST of Cp4.1LG11g03780 vs. ExPASy TrEMBL
Match: A0A6J1KD86 (60S ribosomal protein L5-like OS=Cucurbita maxima OX=3661 GN=LOC111492190 PE=3 SV=1)

HSP 1 Score: 478 bits (1231), Expect = 1.06e-168
Identity = 255/303 (84.16%), Postives = 261/303 (86.14%), Query Frame = 0


Query: 24  AFAKAQKTKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRYVIRFTNKDIT 83
           AFAKAQKTKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYR+VIRFTNKDIT
Sbjct: 2   AFAKAQKTKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVIRFTNKDIT 61

Query: 84  AQVVSSSIAGDMVLAAAYSHELPHYGLDVGLTNYAAAYCTGLLLARRVLKKLEMDDEYVG 143
           AQ+VSSSIAGDMVLAAAYSHELPHYGLDVGLTNYAAAYCTGLLLARRVLKKLEMDDEYVG
Sbjct: 62  AQIVSSSIAGDMVLAAAYSHELPHYGLDVGLTNYAAAYCTGLLLARRVLKKLEMDDEYVG 121

Query: 144 NLE---------------------------------------GALDGGLDVPHSVKRFAG 203
           NLE                                       GALDGGLDVPHSVKRFAG
Sbjct: 122 NLEVSGEDFSVEPTDSRRPFRALLDVGLVRTTTGNRVFGALKGALDGGLDVPHSVKRFAG 181

Query: 204 FSKDSKELDADVHRKYIFGGHVAAYMRSLMEDEPEKYQSQFSDYIKKGIEPDNIEELLKK 263
           FSKDSKELDADVHRKYIFGGH+AAYMRSLMEDEPEKYQSQFSDYIKKGIEPDNIEELLKK
Sbjct: 182 FSKDSKELDADVHRKYIFGGHIAAYMRSLMEDEPEKYQSQFSDYIKKGIEPDNIEELLKK 241

Query: 264 VHSAIRTEPLAKTTVKQPPKEEHKRYNLKKLTYDERRAKLVERLNALNSAAGADDDDDED 287
           VHSAIRTEPLAKTTVKQP KE HKRYNLKKLTYDERR KLVERLNALNSAAGADDDDD+D
Sbjct: 242 VHSAIRTEPLAKTTVKQPRKE-HKRYNLKKLTYDERRVKLVERLNALNSAAGADDDDDDD 301

[Close]

BLAST of Cp4.1LG11g03780 vs. ExPASy TrEMBL
Match: A0A5A7VC42 (60S ribosomal protein L5-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G00440 PE=3 SV=1)

HSP 1 Score: 452 bits (1164), Expect = 1.47e-158
Identity = 243/303 (80.20%), Postives = 255/303 (84.16%), Query Frame = 0


Query: 24  AFAKAQKTKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRYVIRFTNKDIT 83
           AFAKAQKTKAYFKRYQVK+KRRREGKTDYRARIRLINQDKNKYNTPKYR+VIRFTNKDIT
Sbjct: 2   AFAKAQKTKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVIRFTNKDIT 61

Query: 84  AQVVSSSIAGDMVLAAAYSHELPHYGLDVGLTNYAAAYCTGLLLARRVLKKLEMDDEYVG 143
           AQ+VSSSIAGDMVLA+AYSHELPHYGL+VGLTNYAAAYCTGLLLARRVLKKLEMDDEY G
Sbjct: 62  AQIVSSSIAGDMVLASAYSHELPHYGLEVGLTNYAAAYCTGLLLARRVLKKLEMDDEYEG 121

Query: 144 NLE---------------------------------------GALDGGLDVPHSVKRFAG 203
           NLE                                       GALDGGLDVPHSVKRFAG
Sbjct: 122 NLEATGEDYSVEPTDSRRPFRALLDVGLVRTTTGNRVFGALKGALDGGLDVPHSVKRFAG 181

Query: 204 FSKDSKELDADVHRKYIFGGHVAAYMRSLMEDEPEKYQSQFSDYIKKGIEPDNIEELLKK 263
           FSK + EL+ADVHRKYIFGGHVAAYMR+LMEDEPEKYQ+QFSDYIKKGIEPDNIEELLKK
Sbjct: 182 FSKGNNELNADVHRKYIFGGHVAAYMRTLMEDEPEKYQTQFSDYIKKGIEPDNIEELLKK 241

Query: 264 VHSAIRTEPLAKTTVKQPPKEEHKRYNLKKLTYDERRAKLVERLNALNSAAGADDDDDED 287
           VHSAIR EPLAKTT KQPPK  HKRYNLKKLTY++R+AKLVERLNALNSAAGADDD  ED
Sbjct: 242 VHSAIRAEPLAKTTEKQPPKT-HKRYNLKKLTYEQRKAKLVERLNALNSAAGADDD--ED 301

[Close]

BLAST of Cp4.1LG11g03780 vs. ExPASy TrEMBL
Match: A0A1S3BCD6 (60S ribosomal protein L5-like OS=Cucumis melo OX=3656 GN=LOC103488491 PE=3 SV=1)

HSP 1 Score: 452 bits (1164), Expect = 1.47e-158
Identity = 243/303 (80.20%), Postives = 255/303 (84.16%), Query Frame = 0


Query: 24  AFAKAQKTKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRYVIRFTNKDIT 83
           AFAKAQKTKAYFKRYQVK+KRRREGKTDYRARIRLINQDKNKYNTPKYR+VIRFTNKDIT
Sbjct: 2   AFAKAQKTKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVIRFTNKDIT 61

Query: 84  AQVVSSSIAGDMVLAAAYSHELPHYGLDVGLTNYAAAYCTGLLLARRVLKKLEMDDEYVG 143
           AQ+VSSSIAGDMVLA+AYSHELPHYGL+VGLTNYAAAYCTGLLLARRVLKKLEMDDEY G
Sbjct: 62  AQIVSSSIAGDMVLASAYSHELPHYGLEVGLTNYAAAYCTGLLLARRVLKKLEMDDEYEG 121

Query: 144 NLE---------------------------------------GALDGGLDVPHSVKRFAG 203
           NLE                                       GALDGGLDVPHSVKRFAG
Sbjct: 122 NLEATGEDYSVEPTDSRRPFRALLDVGLVRTTTGNRVFGALKGALDGGLDVPHSVKRFAG 181

Query: 204 FSKDSKELDADVHRKYIFGGHVAAYMRSLMEDEPEKYQSQFSDYIKKGIEPDNIEELLKK 263
           FSK + EL+ADVHRKYIFGGHVAAYMR+LMEDEPEKYQ+QFSDYIKKGIEPDNIEELLKK
Sbjct: 182 FSKGNNELNADVHRKYIFGGHVAAYMRTLMEDEPEKYQTQFSDYIKKGIEPDNIEELLKK 241

Query: 264 VHSAIRTEPLAKTTVKQPPKEEHKRYNLKKLTYDERRAKLVERLNALNSAAGADDDDDED 287
           VHSAIR EPLAKTT KQPPK  HKRYNLKKLTY++R+AKLVERLNALNSAAGADDD  ED
Sbjct: 242 VHSAIRAEPLAKTTEKQPPKT-HKRYNLKKLTYEQRKAKLVERLNALNSAAGADDD--ED 301

[Close]

BLAST of Cp4.1LG11g03780 vs. ExPASy TrEMBL
Match: A0A6J1BRE1 (60S ribosomal protein L5-like OS=Momordica charantia OX=3673 GN=LOC111004895 PE=3 SV=1)

HSP 1 Score: 452 bits (1162), Expect = 2.96e-158
Identity = 240/300 (80.00%), Postives = 252/300 (84.00%), Query Frame = 0


Query: 24  AFAKAQKTKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRYVIRFTNKDIT 83
           AFAKAQKTKAYFKRYQVKYKRRR+GKTDYRARIRLINQDKNKYNTPKYR+VIRFTNKDIT
Sbjct: 2   AFAKAQKTKAYFKRYQVKYKRRRDGKTDYRARIRLINQDKNKYNTPKYRFVIRFTNKDIT 61

Query: 84  AQVVSSSIAGDMVLAAAYSHELPHYGLDVGLTNYAAAYCTGLLLARRVLKKLEMDDEYVG 143
           AQ+VSSSIAGDMVLAAAYSHELPHYGL+VGLTNYAAAYCTGLLLARRVLK LEMD EY G
Sbjct: 62  AQIVSSSIAGDMVLAAAYSHELPHYGLEVGLTNYAAAYCTGLLLARRVLKSLEMDKEYEG 121

Query: 144 NLE---------------------------------------GALDGGLDVPHSVKRFAG 203
           NLE                                       GALDGGLDVPHSVKRFAG
Sbjct: 122 NLEVTGEDFSVEPTDNRRPFRALLDVGLVRTTTGNRVFGALKGALDGGLDVPHSVKRFAG 181

Query: 204 FSKDSKELDADVHRKYIFGGHVAAYMRSLMEDEPEKYQSQFSDYIKKGIEPDNIEELLKK 263
           FSKD+KELDA+VHRKYIFGGHVAAYMRSLMEDEPEKYQS FSDYIKKGIEPDNIEELLKK
Sbjct: 182 FSKDNKELDAEVHRKYIFGGHVAAYMRSLMEDEPEKYQSHFSDYIKKGIEPDNIEELLKK 241

Query: 264 VHSAIRTEPLAKTTVKQPPKEEHKRYNLKKLTYDERRAKLVERLNALNSAAGADDDDDED 284
           VH+AIR+EPL K T KQPPKE HKR+NLKKLTY+ER+AKLVERLNALNSAAGADDDD +D
Sbjct: 242 VHAAIRSEPLVKKTEKQPPKE-HKRFNLKKLTYEERKAKLVERLNALNSAAGADDDDXDD 300

[Close]

BLAST of Cp4.1LG11g03780 vs. TAIR 10
Match: AT3G25520.1 (ribosomal protein L5 )

HSP 1 Score: 371.7 bits (953), Expect = 5.3e-103
Identity = 197/302 (65.23%), Postives = 230/302 (76.16%), Query Frame = 0


Query: 25  FAKAQKTKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRYVIRFTNKDITA 84
           F K+ K+ AYFKRYQVK++RRR+GKTDYRARIRLINQDKNKYNTPKYR+V+RFTNKDI A
Sbjct: 3   FVKSTKSNAYFKRYQVKFRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIVA 62

Query: 85  QVVSSSIAGDMVLAAAYSHELPHYGLDVGLTNYAAAYCTGLLLARRVLKKLEMDDEYVGN 144
           Q+VS+SIAGD+V A+AY+HELP YGL VGLTNYAAAYCTGLLLARRVLK LEMDDEY GN
Sbjct: 63  QIVSASIAGDIVKASAYAHELPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGN 122

Query: 145 LE---------------------------------------GALDGGLDVPHSVKRFAGF 204
           +E                                       GALDGGLD+PHS KRFAGF
Sbjct: 123 VEATGEDFSVEPTDSRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGF 182

Query: 205 SKDSKELDADVHRKYIFGGHVAAYMRSLMEDEPEKYQSQFSDYIKKGIEPDNIEELLKKV 264
            K++K+LDA++HR YI+GGHV+ YM+ L EDEPEK Q+ FS YIKKG+E ++IEEL KKV
Sbjct: 183 HKENKQLDAEIHRNYIYGGHVSNYMKLLGEDEPEKLQTHFSAYIKKGVEAESIEELYKKV 242

Query: 265 HSAIRTEPLAKTTVKQPPKEEHKRYNLKKLTYDERRAKLVERLNALNSAAGADDDDDEDD 288
           H+AIR +P  K TVK  PK +HKRYNLKKLTY+ER+ KL+ER+ ALN A G  DDDDEDD
Sbjct: 243 HAAIRADPNPKKTVKPAPK-QHKRYNLKKLTYEERKNKLIERVKALNGAGG--DDDDEDD 301

[Close]

BLAST of Cp4.1LG11g03780 vs. TAIR 10
Match: AT5G39740.1 (ribosomal protein L5 B )

HSP 1 Score: 371.3 bits (952), Expect = 6.9e-103
Identity = 197/302 (65.23%), Postives = 229/302 (75.83%), Query Frame = 0


Query: 25  FAKAQKTKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRYVIRFTNKDITA 84
           F K+ K+ AYFKRYQVK++RRR+GKTDYRARIRLINQDKNKYNTPKYR+V+RFTNKDI A
Sbjct: 3   FVKSSKSNAYFKRYQVKFRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIVA 62

Query: 85  QVVSSSIAGDMVLAAAYSHELPHYGLDVGLTNYAAAYCTGLLLARRVLKKLEMDDEYVGN 144
           Q+VS+SIAGD+V A+AY+HELP YGL VGLTNYAAAYCTGLLLARRVLK LEMDDEY GN
Sbjct: 63  QIVSASIAGDIVKASAYAHELPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGN 122

Query: 145 LE---------------------------------------GALDGGLDVPHSVKRFAGF 204
           +E                                       GALDGGLD+PHS KRFAGF
Sbjct: 123 VEATGEDFSVEPTDSRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGF 182

Query: 205 SKDSKELDADVHRKYIFGGHVAAYMRSLMEDEPEKYQSQFSDYIKKGIEPDNIEELLKKV 264
            K++K+LDA++HR YI+GGHV+ YM+ L EDEPEK Q+ FS YIKKG+E ++IEE+ KKV
Sbjct: 183 HKENKQLDAEIHRNYIYGGHVSNYMKLLGEDEPEKLQTHFSAYIKKGVEAESIEEMYKKV 242

Query: 265 HSAIRTEPLAKTTVKQPPKEEHKRYNLKKLTYDERRAKLVERLNALNSAAGADDDDDEDD 288
           H+AIR EP  K T K  PK EHKRYNLKKLTY+ER+ KL+ER+ ALN A G  DDDDEDD
Sbjct: 243 HAAIRAEPNHKKTEKSAPK-EHKRYNLKKLTYEERKNKLIERVKALNGAGG--DDDDEDD 301

[Close]

BLAST of Cp4.1LG11g03780 vs. TAIR 10
Match: AT5G39740.2 (ribosomal protein L5 B )

HSP 1 Score: 371.3 bits (952), Expect = 6.9e-103
Identity = 197/302 (65.23%), Postives = 229/302 (75.83%), Query Frame = 0


Query: 25  FAKAQKTKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRYVIRFTNKDITA 84
           F K+ K+ AYFKRYQVK++RRR+GKTDYRARIRLINQDKNKYNTPKYR+V+RFTNKDI A
Sbjct: 3   FVKSSKSNAYFKRYQVKFRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIVA 62

Query: 85  QVVSSSIAGDMVLAAAYSHELPHYGLDVGLTNYAAAYCTGLLLARRVLKKLEMDDEYVGN 144
           Q+VS+SIAGD+V A+AY+HELP YGL VGLTNYAAAYCTGLLLARRVLK LEMDDEY GN
Sbjct: 63  QIVSASIAGDIVKASAYAHELPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGN 122

Query: 145 LE---------------------------------------GALDGGLDVPHSVKRFAGF 204
           +E                                       GALDGGLD+PHS KRFAGF
Sbjct: 123 VEATGEDFSVEPTDSRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGF 182

Query: 205 SKDSKELDADVHRKYIFGGHVAAYMRSLMEDEPEKYQSQFSDYIKKGIEPDNIEELLKKV 264
            K++K+LDA++HR YI+GGHV+ YM+ L EDEPEK Q+ FS YIKKG+E ++IEE+ KKV
Sbjct: 183 HKENKQLDAEIHRNYIYGGHVSNYMKLLGEDEPEKLQTHFSAYIKKGVEAESIEEMYKKV 242

Query: 265 HSAIRTEPLAKTTVKQPPKEEHKRYNLKKLTYDERRAKLVERLNALNSAAGADDDDDEDD 288
           H+AIR EP  K T K  PK EHKRYNLKKLTY+ER+ KL+ER+ ALN A G  DDDDEDD
Sbjct: 243 HAAIRAEPNHKKTEKSAPK-EHKRYNLKKLTYEERKNKLIERVKALNGAGG--DDDDEDD 301

[Close]

BLAST of Cp4.1LG11g03780 vs. TAIR 10
Match: AT3G25520.2 (ribosomal protein L5 )

HSP 1 Score: 194.1 bits (492), Expect = 1.5e-49
Identity = 99/145 (68.28%), Postives = 120/145 (82.76%), Query Frame = 0


Query: 143 GNLEGALDGGLDVPHSVKRFAGFSKDSKELDADVHRKYIFGGHVAAYMRSLMEDEPEKYQ 202
           G L+GALDGGLD+PHS KRFAGF K++K+LDA++HR YI+GGHV+ YM+ L EDEPEK Q
Sbjct: 49  GALKGALDGGLDIPHSDKRFAGFHKENKQLDAEIHRNYIYGGHVSNYMKLLGEDEPEKLQ 108

Query: 203 SQFSDYIKKGIEPDNIEELLKKVHSAIRTEPLAKTTVKQPPKEEHKRYNLKKLTYDERRA 262
           + FS YIKKG+E ++IEEL KKVH+AIR +P  K TVK  PK +HKRYNLKKLTY+ER+ 
Sbjct: 109 THFSAYIKKGVEAESIEELYKKVHAAIRADPNPKKTVKPAPK-QHKRYNLKKLTYEERKN 168

Query: 263 KLVERLNALNSAAGADDDDDEDDEE 288
           KL+ER+ ALN A G  DDDDEDDEE
Sbjct: 169 KLIERVKALNGAGG--DDDDEDDEE 190

The following BLAST results are available for this feature:

BLAST of Cp4.1LG11g03780 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6UNT2	8.0e-112	70.86	60S ribosomal protein L5 OS=Cucumis sativus OX=3659 GN=RPL5 PE=2 SV=1	[more]
A2WXX3	1.0e-103	64.69	60S ribosomal protein L5-1 OS=Oryza sativa subsp. indica OX=39946 GN=RPL5A PE=3 ...	[more]
Q0JGY1	3.0e-103	64.69	60S ribosomal protein L5-1 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL5A PE=...	[more]
Q8L4L4	3.0e-103	64.69	60S ribosomal protein L5-2 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL5B PE=...	[more]
Q8LBI1	7.5e-102	65.23	60S ribosomal protein L5-1 OS=Arabidopsis thaliana OX=3702 GN=RPL5A PE=1 SV=2	[more]

BLAST of Cp4.1LG11g03780 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7029556.1	4.31e-180	80.81	60S ribosomal protein L5, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023547082.1	2.97e-175	87.13	60S ribosomal protein L5-like [Cucurbita pepo subsp. pepo]	[more]
KAG6598618.1	1.14e-170	85.48	60S ribosomal protein L5, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022961788.1	1.69e-169	85.43	60S ribosomal protein L5-like [Cucurbita moschata]	[more]
XP_022997223.1	2.20e-168	84.16	60S ribosomal protein L5-like [Cucurbita maxima]	[more]

BLAST of Cp4.1LG11g03780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HCU2	8.20e-170	85.43	60S ribosomal protein L5-like OS=Cucurbita moschata OX=3662 GN=LOC111462450 PE=3...	[more]
A0A6J1KD86	1.06e-168	84.16	60S ribosomal protein L5-like OS=Cucurbita maxima OX=3661 GN=LOC111492190 PE=3 S...	[more]
A0A5A7VC42	1.47e-158	80.20	60S ribosomal protein L5-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A1S3BCD6	1.47e-158	80.20	60S ribosomal protein L5-like OS=Cucumis melo OX=3656 GN=LOC103488491 PE=3 SV=1	[more]
A0A6J1BRE1	2.96e-158	80.00	60S ribosomal protein L5-like OS=Momordica charantia OX=3673 GN=LOC111004895 PE=...	[more]

BLAST of Cp4.1LG11g03780 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G25520.1	5.3e-103	65.23	ribosomal protein L5	[more]
AT5G39740.1	6.9e-103	65.23	ribosomal protein L5 B	[more]
AT5G39740.2	6.9e-103	65.23	ribosomal protein L5 B	[more]
AT3G25520.2	1.5e-49	68.28	ribosomal protein L5	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005485	Ribosomal protein L5 eukaryotic/L18 archaeal	PRINTS	PR00058	RIBOSOMALL5	coord: 42..61 score: 74.69 coord: 65..84 score: 68.44 coord: 106..126 score: 80.36
IPR005485	Ribosomal protein L5 eukaryotic/L18 archaeal	PFAM	PF17144	Ribosomal_L5e	coord: 36..144 e-value: 1.4E-54 score: 184.5
IPR005485	Ribosomal protein L5 eukaryotic/L18 archaeal	PANTHER	PTHR23410	RIBOSOMAL PROTEIN L5-RELATED	coord: 24..146 coord: 143..283
IPR005485	Ribosomal protein L5 eukaryotic/L18 archaeal	HAMAP	MF_01337_A	Ribosomal_L18_A	coord: 36..229 score: 19.534597
IPR025607	Ribosomal protein L5 eukaryotic/L18 archaeal, C-terminal	PFAM	PF14204	Ribosomal_L18_c	coord: 174..264 e-value: 6.2E-34 score: 116.8
None	No IPR available	GENE3D	3.30.420.100		coord: 23..144 e-value: 1.5E-61 score: 210.5 coord: 145..275 e-value: 2.6E-52 score: 180.2
None	No IPR available	PANTHER	PTHR23410:SF28	SUBFAMILY NOT NAMED	coord: 24..146 coord: 143..283
None	No IPR available	CDD	cd00432	Ribosomal_L18_L5e	coord: 63..163 e-value: 1.12727E-20 score: 82.5879
None	No IPR available	SUPERFAMILY	53137	Translational machinery components	coord: 33..234

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG11g03780.1	Cp4.1LG11g03780.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000027	ribosomal large subunit assembly
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0008097	5S rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome