Cp4.1LG11g02200 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG11g02200
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionTLC domain-containing protein
LocationCp4.1LG11: 1182593 .. 1183886 (+)
RNA-Seq ExpressionCp4.1LG11g02200
SyntenyCp4.1LG11g02200
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGTCACCTCGGGTCGAGATCTCGACGTAATAAACGTCGTCGTTTTGGGTGTAATAGCATGGACATTGGCTTTCATTTCCTTGAGAAAACTCCTTCCAAAGAGATCTTTTGAGTTCTGCAACCGCCTTGTCTCCACGCTCCATGCTTGTTTGGCTGTCACTTTGGCTTCCATCTCTGTGCAGAATTGGCGATGCCCCATTTGTCCTCTCGCTTCTCAAGCTTCACCCTTTCAGGTACTTTCTTCTTCAAAGCTTTGTACGACGTCGTTTTGTTGTTCTTGATGAATTAGATATGAAATGGGGGTTTTTTTTAAGCCGTTAAAAATGGTGGATTTGTTCGCCAGATGCAAACATTGGCTGTGACCTGTTCTTATTTGATCTATGATATGGTGTGTTGCCACTTTGACAAGAAAGTGAATGTGGACAATGCCATCCATCACTTGGTTTGCATTGTTGGAATTGCAGCTGGCTTTGCTTATCAAAAGGTACTCTTTTTTCTCGATCACTAAATTAGGCTCGGTTTCAACTATTTATGCTTCGAAGAAGAAGAGAAGTCTTCTTTTCTTAGCACGGGTGAGTTAACTATCACGGGTTTGGGTCAAGTTGGTTGAATCACCTATTTAAGATACGGTATCTTACGAATTACATTGATGATTTCTTCGTTGTGAACATGTAGTGTGGGTCAGAGATGGTAGCAGCGTTATGCATAACCGAGATCTCAAGCCCCTTTCTCCATTTAAGGGAAATTCTCAAAGAAATTGGTTATAGAGGCACGGACCTTAATTTGGCTGCTGATGTAAGTCATCGCCCCAATTGAGCGAGATTATATGCTTAAATCTATTCAAATGAATATCAAACGAAACTTAAGCTAATATGATATTGATTCGATGACAGATCGGATTTGCTGTGATATTTTCATTTGGAAGAATGGTAGGAGGGCCTTATCTCACCTACATGACTCTATCCGCCACCGGCGTCCCTCTTCTTATTAAGGTAGCAAACATCTAAATGCATATTCTCCATAAAATTTAGTCGTGAATGGATAAAATATCGATGTCAATAGATATTTTAATAAAAATATCACGAGCTCGTAAGTAACGAGTTCTTTATGACCATGAGCTCGTAAATACCTTTATCAACTACTTTGCTCAACTTTCACTAACCAAGTAGTTCATATAATTCACAGGCCATGGCTCTAGGATTGCAGCTTGTCAGTGCCTACTGGTTTTACAAGATCGTGAGAATGGTCAGATTCAAACTCAACAACAGATCTACATCGAAGAACAGTTAA

mRNA sequence

ATGGCGGTCACCTCGGGTCGAGATCTCGACGTAATAAACGTCGTCGTTTTGGGTGTAATAGCATGGACATTGGCTTTCATTTCCTTGAGAAAACTCCTTCCAAAGAGATCTTTTGAGTTCTGCAACCGCCTTGTCTCCACGCTCCATGCTTGTTTGGCTGTCACTTTGGCTTCCATCTCTGTGCAGAATTGGCGATGCCCCATTTGTCCTCTCGCTTCTCAAGCTTCACCCTTTCAGATGCAAACATTGGCTGTGACCTGTTCTTATTTGATCTATGATATGGTGTGTTGCCACTTTGACAAGAAAGTGAATGTGGACAATGCCATCCATCACTTGGTTTGCATTGTTGGAATTGCAGCTGGCTTTGCTTATCAAAAGTGTGGGTCAGAGATGGTAGCAGCGTTATGCATAACCGAGATCTCAAGCCCCTTTCTCCATTTAAGGGAAATTCTCAAAGAAATTGGTTATAGAGGCACGGACCTTAATTTGGCTGCTGATATCGGATTTGCTGTGATATTTTCATTTGGAAGAATGGTAGGAGGGCCTTATCTCACCTACATGACTCTATCCGCCACCGGCGTCCCTCTTCTTATTAAGGCCATGGCTCTAGGATTGCAGCTTGTCAGTGCCTACTGGTTTTACAAGATCGTGAGAATGGTCAGATTCAAACTCAACAACAGATCTACATCGAAGAACAGTTAA

Coding sequence (CDS)

ATGGCGGTCACCTCGGGTCGAGATCTCGACGTAATAAACGTCGTCGTTTTGGGTGTAATAGCATGGACATTGGCTTTCATTTCCTTGAGAAAACTCCTTCCAAAGAGATCTTTTGAGTTCTGCAACCGCCTTGTCTCCACGCTCCATGCTTGTTTGGCTGTCACTTTGGCTTCCATCTCTGTGCAGAATTGGCGATGCCCCATTTGTCCTCTCGCTTCTCAAGCTTCACCCTTTCAGATGCAAACATTGGCTGTGACCTGTTCTTATTTGATCTATGATATGGTGTGTTGCCACTTTGACAAGAAAGTGAATGTGGACAATGCCATCCATCACTTGGTTTGCATTGTTGGAATTGCAGCTGGCTTTGCTTATCAAAAGTGTGGGTCAGAGATGGTAGCAGCGTTATGCATAACCGAGATCTCAAGCCCCTTTCTCCATTTAAGGGAAATTCTCAAAGAAATTGGTTATAGAGGCACGGACCTTAATTTGGCTGCTGATATCGGATTTGCTGTGATATTTTCATTTGGAAGAATGGTAGGAGGGCCTTATCTCACCTACATGACTCTATCCGCCACCGGCGTCCCTCTTCTTATTAAGGCCATGGCTCTAGGATTGCAGCTTGTCAGTGCCTACTGGTTTTACAAGATCGTGAGAATGGTCAGATTCAAACTCAACAACAGATCTACATCGAAGAACAGTTAA

Protein sequence

MAVTSGRDLDVINVVVLGVIAWTLAFISLRKLLPKRSFEFCNRLVSTLHACLAVTLASISVQNWRCPICPLASQASPFQMQTLAVTCSYLIYDMVCCHFDKKVNVDNAIHHLVCIVGIAAGFAYQKCGSEMVAALCITEISSPFLHLREILKEIGYRGTDLNLAADIGFAVIFSFGRMVGGPYLTYMTLSATGVPLLIKAMALGLQLVSAYWFYKIVRMVRFKLNNRSTSKNS
Homology
BLAST of Cp4.1LG11g02200 vs. ExPASy Swiss-Prot
Match: Q6ZRR5 (TLC domain-containing protein 5 OS=Homo sapiens OX=9606 GN=TLCD5 PE=2 SV=2)

HSP 1 Score: 71.6 bits (174), Expect = 1.3e-11
Identity = 54/205 (26.34%), Postives = 94/205 (45.85%), Query Frame = 0

Query: 15  VVLGVIAWTLAFISLRKLLPKRSFEFCNRLVSTLHACLAVTL-ASISVQNWRCPICPLAS 74
           V+  +  W   +IS   L   RS+E+  RLV+  H  L++ L A I   +   P     S
Sbjct: 9   VLCSLCGWLSLYISFCHLNKHRSYEWSCRLVTFTHGVLSIGLSAYIGFIDGPWPFTHPGS 68

Query: 75  QASPFQMQTLAVTCSYLIYDMVCCHFDKKVNVDNAIHHLVCIVGIAAGFAYQKCGSEMVA 134
             +P Q+  L +T  Y I+D+  C + +        HH + I+GI       + G+E+ A
Sbjct: 69  PNTPLQVHVLCLTLGYFIFDLGWCVYFQSEGALMLAHHTLSILGIIMALVLGESGTEVNA 128

Query: 135 ALCITEISSPFLHLREILKEIGYRGTDLNLAADIGFAVIFSFGRMVGGPYLTYMTLSATG 194
            L  +E+++P L +R  L+E G+  +      D  F  +F+  R+  G  L +  + +  
Sbjct: 129 VLFGSELTNPLLQMRWFLRETGHYHSFTGDVVDFLFVALFTGVRIGVGACLLFCEMVSPT 188

Query: 195 VPLLIKAMALGLQLVSAYWFYKIVR 219
               +KA  + +  VS  + + I R
Sbjct: 189 PKWFVKAGGVAMYAVSWCFMFSIWR 213

BLAST of Cp4.1LG11g02200 vs. ExPASy Swiss-Prot
Match: Q0VD42 (TLC domain-containing protein 5 OS=Bos taurus OX=9913 GN=TLCD5 PE=2 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.7e-11
Identity = 52/198 (26.26%), Postives = 92/198 (46.46%), Query Frame = 0

Query: 22  WTLAFISLRKLLPKRSFEFCNRLVSTLHACLAVTL-ASISVQNWRCPICPLASQASPFQM 81
           W   ++S  +L   RS+E+  RLV+  H  L++ L A I   +   P     S  +P Q+
Sbjct: 16  WLSLYVSFCRLNKHRSYEWNCRLVTFTHGILSIGLSAYIGFIDGPWPFTHPGSPNTPLQV 75

Query: 82  QTLAVTCSYLIYDMVCCHFDKKVNVDNAIHHLVCIVGIAAGFAYQKCGSEMVAALCITEI 141
             L +T  Y I+D+  C + +        HH + I+GI       + G+E+ A L  +EI
Sbjct: 76  HVLCLTLGYFIFDLGWCIYFRSEGPLMLAHHTLSILGIIVALVLGESGTEVNAVLFGSEI 135

Query: 142 SSPFLHLREILKEIGYRGTDLNLAADIGFAVIFSFGRMVGGPYLTYMTLSATGVPLLIKA 201
           ++P L +R  L+E G+  +      D  F  +F+  R+  G  L +  + +      +K 
Sbjct: 136 TNPLLQIRWFLRETGHYHSFTGDVVDFLFVALFTGVRIGVGACLLFCEMVSPTPKWFVKV 195

Query: 202 MALGLQLVSAYWFYKIVR 219
             + + +VS  + + I R
Sbjct: 196 GGVAMYVVSWCFMFSIWR 213

BLAST of Cp4.1LG11g02200 vs. ExPASy Swiss-Prot
Match: Q1LXV8 (TLC domain-containing protein 5 OS=Danio rerio OX=7955 GN=tlcd5 PE=2 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 5.4e-10
Identity = 52/201 (25.87%), Postives = 90/201 (44.78%), Query Frame = 0

Query: 19  VIAWTLAFISLRKLLPKRSFEFCNRLVSTLHACLAVTL-ASISVQNWRCPICPLASQASP 78
           +I+W   ++ L  L   R  E+  RLV+  H  L + L A I       P     ++ + 
Sbjct: 12  LISWLFLYLLLCHLNSGRDSEWNCRLVTLFHGILIICLTAYIGFIAGPWPFTHPGTENTY 71

Query: 79  FQMQTLAVTCSYLIYDMVCCHFDKKVNVDNAIHHLVCIVGIAAGFAYQKCGSEMVAALCI 138
           FQ+ TL ++  Y ++DM  C + +        HH + I GI       + G E  A L  
Sbjct: 72  FQILTLVLSLGYFLFDMAWCVYFRTEGPVMLAHHTMSIFGILLALGLGESGIETCAVLFG 131

Query: 139 TEISSPFLHLREILKEIGYRGTDLNLAADIGFAVIFSFGRMVGGPYLTYMTLSATGVPLL 198
           +EI++P L  R  LK +G   +      D+ F ++F+  R+  G  + Y  L++    L+
Sbjct: 132 SEITNPLLQARWFLKRMGCYDSLAGDVVDLLFILLFASVRIGVGSRMLYCELTSPKPSLI 191

Query: 199 IKAMALGLQLVSAYWFYKIVR 219
           +K   + +  +S  +   I R
Sbjct: 192 VKVGGVAIYTLSWIFMVDIAR 212

BLAST of Cp4.1LG11g02200 vs. ExPASy Swiss-Prot
Match: Q3TYE7 (TLC domain-containing protein 5 OS=Mus musculus OX=10090 GN=Tlcd5 PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 7.1e-10
Identity = 53/203 (26.11%), Postives = 92/203 (45.32%), Query Frame = 0

Query: 15  VVLGVIAWTLAFISLRKLLPKRSFEFCNRLVSTLHACLAVTL-ASISVQNWRCPICPLAS 74
           V+  +  W   + S   L   RS E+  RLV+  H  L++ L A I   +   P     S
Sbjct: 9   VLCSLGGWLSLYTSFCCLNKHRSCEWSCRLVTFTHGVLSIGLSAYIGFIDGPWPFTHPGS 68

Query: 75  QASPFQMQTLAVTCSYLIYDMVCCHFDKKVNVDNAIHHLVCIVGIAAGFAYQKCGSEMVA 134
             +P Q+  L +T  Y I+D+  C + +        HH + I+GI    A  + G+E+ A
Sbjct: 69  PNTPLQVHVLCLTLGYFIFDLGWCIYFQSEGPLMLAHHTLSILGIIMALALGESGTEVNA 128

Query: 135 ALCITEISSPFLHLREILKEIGYRGTDLNLAADIGFAVIFSFGRMVGGPYLTYMTLSATG 194
            L  +EI++P L +R  L+E G+  +      D  F  +F+  R+  G +L +  + +  
Sbjct: 129 VLFGSEITNPLLQMRWFLRETGHYHSFTGDVVDFLFVALFTGVRIGVGAHLLFCEMVSPT 188

Query: 195 VPLLIKAMALGLQLVSAYWFYKI 217
               +K   + +  VS  W + +
Sbjct: 189 PKWFVKVGGVAMYAVS--WCFMV 209

BLAST of Cp4.1LG11g02200 vs. NCBI nr
Match: XP_023545988.1 (transmembrane protein 56-B-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 464 bits (1194), Expect = 7.96e-165
Identity = 233/233 (100.00%), Postives = 233/233 (100.00%), Query Frame = 0

Query: 1   MAVTSGRDLDVINVVVLGVIAWTLAFISLRKLLPKRSFEFCNRLVSTLHACLAVTLASIS 60
           MAVTSGRDLDVINVVVLGVIAWTLAFISLRKLLPKRSFEFCNRLVSTLHACLAVTLASIS
Sbjct: 1   MAVTSGRDLDVINVVVLGVIAWTLAFISLRKLLPKRSFEFCNRLVSTLHACLAVTLASIS 60

Query: 61  VQNWRCPICPLASQASPFQMQTLAVTCSYLIYDMVCCHFDKKVNVDNAIHHLVCIVGIAA 120
           VQNWRCPICPLASQASPFQMQTLAVTCSYLIYDMVCCHFDKKVNVDNAIHHLVCIVGIAA
Sbjct: 61  VQNWRCPICPLASQASPFQMQTLAVTCSYLIYDMVCCHFDKKVNVDNAIHHLVCIVGIAA 120

Query: 121 GFAYQKCGSEMVAALCITEISSPFLHLREILKEIGYRGTDLNLAADIGFAVIFSFGRMVG 180
           GFAYQKCGSEMVAALCITEISSPFLHLREILKEIGYRGTDLNLAADIGFAVIFSFGRMVG
Sbjct: 121 GFAYQKCGSEMVAALCITEISSPFLHLREILKEIGYRGTDLNLAADIGFAVIFSFGRMVG 180

Query: 181 GPYLTYMTLSATGVPLLIKAMALGLQLVSAYWFYKIVRMVRFKLNNRSTSKNS 233
           GPYLTYMTLSATGVPLLIKAMALGLQLVSAYWFYKIVRMVRFKLNNRSTSKNS
Sbjct: 181 GPYLTYMTLSATGVPLLIKAMALGLQLVSAYWFYKIVRMVRFKLNNRSTSKNS 233

BLAST of Cp4.1LG11g02200 vs. NCBI nr
Match: KAG7029404.1 (Transmembrane protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 451 bits (1160), Expect = 1.22e-159
Identity = 227/233 (97.42%), Postives = 229/233 (98.28%), Query Frame = 0

Query: 1   MAVTSGRDLDVINVVVLGVIAWTLAFISLRKLLPKRSFEFCNRLVSTLHACLAVTLASIS 60
           MAV++GRD DVINVVVLGVIAWTLAFIS RKLLP RSFEFCNRLVSTLHACLAVTLASIS
Sbjct: 1   MAVSTGRDPDVINVVVLGVIAWTLAFISFRKLLPNRSFEFCNRLVSTLHACLAVTLASIS 60

Query: 61  VQNWRCPICPLASQASPFQMQTLAVTCSYLIYDMVCCHFDKKVNVDNAIHHLVCIVGIAA 120
           VQNWRCPICPLASQASPFQMQTLAVTCSYLIYDMVCCHFDKKVNVDNAIHHLVCIVGIAA
Sbjct: 61  VQNWRCPICPLASQASPFQMQTLAVTCSYLIYDMVCCHFDKKVNVDNAIHHLVCIVGIAA 120

Query: 121 GFAYQKCGSEMVAALCITEISSPFLHLREILKEIGYRGTDLNLAADIGFAVIFSFGRMVG 180
           GFAYQKCGSEMVAAL ITEISSPFLHLREILKEIGYRGTDLNLAADIGFAVIFSFGRMVG
Sbjct: 121 GFAYQKCGSEMVAALWITEISSPFLHLREILKEIGYRGTDLNLAADIGFAVIFSFGRMVG 180

Query: 181 GPYLTYMTLSATGVPLLIKAMALGLQLVSAYWFYKIVRMVRFKLNNRSTSKNS 233
           GPYLTYMTLSATGVPLLIKAMALGLQLVSAYWFYKIVRMVRFKLNNRSTSKNS
Sbjct: 181 GPYLTYMTLSATGVPLLIKAMALGLQLVSAYWFYKIVRMVRFKLNNRSTSKNS 233

BLAST of Cp4.1LG11g02200 vs. NCBI nr
Match: KAG6598466.1 (TLC domain-containing protein 5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 451 bits (1159), Expect = 1.73e-159
Identity = 226/233 (97.00%), Postives = 229/233 (98.28%), Query Frame = 0

Query: 1   MAVTSGRDLDVINVVVLGVIAWTLAFISLRKLLPKRSFEFCNRLVSTLHACLAVTLASIS 60
           MAV++GRD DVINVVVLGVIAWTLAFIS RKLLP RSFEFCNRLVSTLHACLAVTLASIS
Sbjct: 1   MAVSTGRDPDVINVVVLGVIAWTLAFISFRKLLPNRSFEFCNRLVSTLHACLAVTLASIS 60

Query: 61  VQNWRCPICPLASQASPFQMQTLAVTCSYLIYDMVCCHFDKKVNVDNAIHHLVCIVGIAA 120
           VQNWRCPICPLASQASPFQMQTLAVTCSYLIYDMVCCHFDKKVNVDNAIHHLVCIVGIAA
Sbjct: 61  VQNWRCPICPLASQASPFQMQTLAVTCSYLIYDMVCCHFDKKVNVDNAIHHLVCIVGIAA 120

Query: 121 GFAYQKCGSEMVAALCITEISSPFLHLREILKEIGYRGTDLNLAADIGFAVIFSFGRMVG 180
           GFAYQKCGSEMVAAL ITEISSPFLHLREILKEIGYRGTDLNLAADIGFAVIFSFGRMVG
Sbjct: 121 GFAYQKCGSEMVAALWITEISSPFLHLREILKEIGYRGTDLNLAADIGFAVIFSFGRMVG 180

Query: 181 GPYLTYMTLSATGVPLLIKAMALGLQLVSAYWFYKIVRMVRFKLNNRSTSKNS 233
           GPYLTYMTLSATGVPLLIKAMALGLQLVSAYWFYKIVRM+RFKLNNRSTSKNS
Sbjct: 181 GPYLTYMTLSATGVPLLIKAMALGLQLVSAYWFYKIVRMIRFKLNNRSTSKNS 233

BLAST of Cp4.1LG11g02200 vs. NCBI nr
Match: XP_022961950.1 (transmembrane protein 56-B-like [Cucurbita moschata])

HSP 1 Score: 446 bits (1146), Expect = 1.66e-157
Identity = 225/233 (96.57%), Postives = 228/233 (97.85%), Query Frame = 0

Query: 1   MAVTSGRDLDVINVVVLGVIAWTLAFISLRKLLPKRSFEFCNRLVSTLHACLAVTLASIS 60
           MAV++GRD DVINVVVLGVIAWTLAFIS RKLLP RSFEFCNRLVSTLHACLAVTLASIS
Sbjct: 1   MAVSTGRDPDVINVVVLGVIAWTLAFISFRKLLPNRSFEFCNRLVSTLHACLAVTLASIS 60

Query: 61  VQNWRCPICPLASQASPFQMQTLAVTCSYLIYDMVCCHFDKKVNVDNAIHHLVCIVGIAA 120
           V+NWRCPICPLASQASPFQMQTLAVTCSYLIYDMVCCHFDKKVNVDNAIHHLVCIVGIAA
Sbjct: 61  VKNWRCPICPLASQASPFQMQTLAVTCSYLIYDMVCCHFDKKVNVDNAIHHLVCIVGIAA 120

Query: 121 GFAYQKCGSEMVAALCITEISSPFLHLREILKEIGYRGTDLNLAADIGFAVIFSFGRMVG 180
           GFAYQKCGSEMVAAL ITEISSPFLHLREILKEIG RGTDLNLAADIGFAVIFSFGRMVG
Sbjct: 121 GFAYQKCGSEMVAALWITEISSPFLHLREILKEIGDRGTDLNLAADIGFAVIFSFGRMVG 180

Query: 181 GPYLTYMTLSATGVPLLIKAMALGLQLVSAYWFYKIVRMVRFKLNNRSTSKNS 233
           GPYLTYMTLSATGVPLLIKAMALGLQLVSAYWFYKIVRMVRFKLNNRSTSKNS
Sbjct: 181 GPYLTYMTLSATGVPLLIKAMALGLQLVSAYWFYKIVRMVRFKLNNRSTSKNS 233

BLAST of Cp4.1LG11g02200 vs. NCBI nr
Match: XP_022996647.1 (transmembrane protein 136-like [Cucurbita maxima])

HSP 1 Score: 437 bits (1123), Expect = 5.32e-154
Identity = 221/233 (94.85%), Postives = 224/233 (96.14%), Query Frame = 0

Query: 1   MAVTSGRDLDVINVVVLGVIAWTLAFISLRKLLPKRSFEFCNRLVSTLHACLAVTLASIS 60
           M V++GRD DVINVVVLGVIAWTLAFISLRKLLPKRSF FCNRLVSTLHACLAVTLASIS
Sbjct: 1   MVVSTGRDPDVINVVVLGVIAWTLAFISLRKLLPKRSFGFCNRLVSTLHACLAVTLASIS 60

Query: 61  VQNWRCPICPLASQASPFQMQTLAVTCSYLIYDMVCCHFDKKVNVDNAIHHLVCIVGIAA 120
           VQNWRCPICPLASQASPFQMQTLAVTCSYLIYDMVCCHFDKKVNVDNAIHHLV IVGIAA
Sbjct: 61  VQNWRCPICPLASQASPFQMQTLAVTCSYLIYDMVCCHFDKKVNVDNAIHHLVSIVGIAA 120

Query: 121 GFAYQKCGSEMVAALCITEISSPFLHLREILKEIGYRGTDLNLAADIGFAVIFSFGRMVG 180
           GFAYQKCGSEMVAAL ITEISSPFLHLREILKEIGYRGTD NLAAD GFAVIFS GRMVG
Sbjct: 121 GFAYQKCGSEMVAALWITEISSPFLHLREILKEIGYRGTDFNLAADFGFAVIFSIGRMVG 180

Query: 181 GPYLTYMTLSATGVPLLIKAMALGLQLVSAYWFYKIVRMVRFKLNNRSTSKNS 233
           GPYLTYMTLSAT VPLLIKAMALGLQLVSAYWFYKIVRMVRFKLN+RSTSKNS
Sbjct: 181 GPYLTYMTLSATAVPLLIKAMALGLQLVSAYWFYKIVRMVRFKLNDRSTSKNS 233

BLAST of Cp4.1LG11g02200 vs. ExPASy TrEMBL
Match: A0A6J1HDN8 (transmembrane protein 56-B-like OS=Cucurbita moschata OX=3662 GN=LOC111462571 PE=4 SV=1)

HSP 1 Score: 446 bits (1146), Expect = 8.02e-158
Identity = 225/233 (96.57%), Postives = 228/233 (97.85%), Query Frame = 0

Query: 1   MAVTSGRDLDVINVVVLGVIAWTLAFISLRKLLPKRSFEFCNRLVSTLHACLAVTLASIS 60
           MAV++GRD DVINVVVLGVIAWTLAFIS RKLLP RSFEFCNRLVSTLHACLAVTLASIS
Sbjct: 1   MAVSTGRDPDVINVVVLGVIAWTLAFISFRKLLPNRSFEFCNRLVSTLHACLAVTLASIS 60

Query: 61  VQNWRCPICPLASQASPFQMQTLAVTCSYLIYDMVCCHFDKKVNVDNAIHHLVCIVGIAA 120
           V+NWRCPICPLASQASPFQMQTLAVTCSYLIYDMVCCHFDKKVNVDNAIHHLVCIVGIAA
Sbjct: 61  VKNWRCPICPLASQASPFQMQTLAVTCSYLIYDMVCCHFDKKVNVDNAIHHLVCIVGIAA 120

Query: 121 GFAYQKCGSEMVAALCITEISSPFLHLREILKEIGYRGTDLNLAADIGFAVIFSFGRMVG 180
           GFAYQKCGSEMVAAL ITEISSPFLHLREILKEIG RGTDLNLAADIGFAVIFSFGRMVG
Sbjct: 121 GFAYQKCGSEMVAALWITEISSPFLHLREILKEIGDRGTDLNLAADIGFAVIFSFGRMVG 180

Query: 181 GPYLTYMTLSATGVPLLIKAMALGLQLVSAYWFYKIVRMVRFKLNNRSTSKNS 233
           GPYLTYMTLSATGVPLLIKAMALGLQLVSAYWFYKIVRMVRFKLNNRSTSKNS
Sbjct: 181 GPYLTYMTLSATGVPLLIKAMALGLQLVSAYWFYKIVRMVRFKLNNRSTSKNS 233

BLAST of Cp4.1LG11g02200 vs. ExPASy TrEMBL
Match: A0A6J1K2K3 (transmembrane protein 136-like OS=Cucurbita maxima OX=3661 GN=LOC111491828 PE=4 SV=1)

HSP 1 Score: 437 bits (1123), Expect = 2.57e-154
Identity = 221/233 (94.85%), Postives = 224/233 (96.14%), Query Frame = 0

Query: 1   MAVTSGRDLDVINVVVLGVIAWTLAFISLRKLLPKRSFEFCNRLVSTLHACLAVTLASIS 60
           M V++GRD DVINVVVLGVIAWTLAFISLRKLLPKRSF FCNRLVSTLHACLAVTLASIS
Sbjct: 1   MVVSTGRDPDVINVVVLGVIAWTLAFISLRKLLPKRSFGFCNRLVSTLHACLAVTLASIS 60

Query: 61  VQNWRCPICPLASQASPFQMQTLAVTCSYLIYDMVCCHFDKKVNVDNAIHHLVCIVGIAA 120
           VQNWRCPICPLASQASPFQMQTLAVTCSYLIYDMVCCHFDKKVNVDNAIHHLV IVGIAA
Sbjct: 61  VQNWRCPICPLASQASPFQMQTLAVTCSYLIYDMVCCHFDKKVNVDNAIHHLVSIVGIAA 120

Query: 121 GFAYQKCGSEMVAALCITEISSPFLHLREILKEIGYRGTDLNLAADIGFAVIFSFGRMVG 180
           GFAYQKCGSEMVAAL ITEISSPFLHLREILKEIGYRGTD NLAAD GFAVIFS GRMVG
Sbjct: 121 GFAYQKCGSEMVAALWITEISSPFLHLREILKEIGYRGTDFNLAADFGFAVIFSIGRMVG 180

Query: 181 GPYLTYMTLSATGVPLLIKAMALGLQLVSAYWFYKIVRMVRFKLNNRSTSKNS 233
           GPYLTYMTLSAT VPLLIKAMALGLQLVSAYWFYKIVRMVRFKLN+RSTSKNS
Sbjct: 181 GPYLTYMTLSATAVPLLIKAMALGLQLVSAYWFYKIVRMVRFKLNDRSTSKNS 233

BLAST of Cp4.1LG11g02200 vs. ExPASy TrEMBL
Match: A0A5A7VDR0 (Transmembrane protein 136 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G005440 PE=4 SV=1)

HSP 1 Score: 390 bits (1003), Expect = 5.00e-136
Identity = 198/234 (84.62%), Postives = 212/234 (90.60%), Query Frame = 0

Query: 1   MAVTSGRDLDVINVVVLGVIAWTLAFISLRKLL-PKRSFEFCNRLVSTLHACLAVTLASI 60
           M V+  RD D+INVVV GVI+WTL F+ LRK++ P RSFEFCNRL+ST+HA LAVTLASI
Sbjct: 1   MEVSETRDPDIINVVVYGVISWTLGFVLLRKVVFPNRSFEFCNRLISTIHAFLAVTLASI 60

Query: 61  SVQNWRCPICPLASQASPFQMQTLAVTCSYLIYDMVCCHFDKKVNVDNAIHHLVCIVGIA 120
           SVQNWRCPICPLAS++S FQMQTL V+CSYLIYDMVCCHFDKKV++DN IHHLV IVGIA
Sbjct: 61  SVQNWRCPICPLASKSSSFQMQTLGVSCSYLIYDMVCCHFDKKVSLDNTIHHLVSIVGIA 120

Query: 121 AGFAYQKCGSEMVAALCITEISSPFLHLREILKEIGYRGTDLNLAADIGFAVIFSFGRMV 180
           AGFAYQKCGSEMVAAL ITEISSPFLHLREILKE GYRGTDLNLAADIGFAVIFSF RMV
Sbjct: 121 AGFAYQKCGSEMVAALWITEISSPFLHLREILKEFGYRGTDLNLAADIGFAVIFSFARMV 180

Query: 181 GGPYLTYMTLSATGVPLLIKAMALGLQLVSAYWFYKIVRMVRFKLNNRSTSKNS 233
           GGPYLTYMTLSA  VP LIKAMALGLQLVSAYWFYKIVRM+RFKL NRST KNS
Sbjct: 181 GGPYLTYMTLSAN-VPFLIKAMALGLQLVSAYWFYKIVRMIRFKLKNRSTLKNS 233

BLAST of Cp4.1LG11g02200 vs. ExPASy TrEMBL
Match: A0A1S3BB19 (transmembrane protein 136 OS=Cucumis melo OX=3656 GN=LOC103487998 PE=4 SV=1)

HSP 1 Score: 390 bits (1003), Expect = 5.00e-136
Identity = 198/234 (84.62%), Postives = 212/234 (90.60%), Query Frame = 0

Query: 1   MAVTSGRDLDVINVVVLGVIAWTLAFISLRKLL-PKRSFEFCNRLVSTLHACLAVTLASI 60
           M V+  RD D+INVVV GVI+WTL F+ LRK++ P RSFEFCNRL+ST+HA LAVTLASI
Sbjct: 1   MEVSETRDPDIINVVVYGVISWTLGFVLLRKVVFPNRSFEFCNRLISTIHAFLAVTLASI 60

Query: 61  SVQNWRCPICPLASQASPFQMQTLAVTCSYLIYDMVCCHFDKKVNVDNAIHHLVCIVGIA 120
           SVQNWRCPICPLAS++S FQMQTL V+CSYLIYDMVCCHFDKKV++DN IHHLV IVGIA
Sbjct: 61  SVQNWRCPICPLASKSSSFQMQTLGVSCSYLIYDMVCCHFDKKVSLDNTIHHLVSIVGIA 120

Query: 121 AGFAYQKCGSEMVAALCITEISSPFLHLREILKEIGYRGTDLNLAADIGFAVIFSFGRMV 180
           AGFAYQKCGSEMVAAL ITEISSPFLHLREILKE GYRGTDLNLAADIGFAVIFSF RMV
Sbjct: 121 AGFAYQKCGSEMVAALWITEISSPFLHLREILKEFGYRGTDLNLAADIGFAVIFSFARMV 180

Query: 181 GGPYLTYMTLSATGVPLLIKAMALGLQLVSAYWFYKIVRMVRFKLNNRSTSKNS 233
           GGPYLTYMTLSA  VP LIKAMALGLQLVSAYWFYKIVRM+RFKL NRST KNS
Sbjct: 181 GGPYLTYMTLSAN-VPFLIKAMALGLQLVSAYWFYKIVRMIRFKLKNRSTLKNS 233

BLAST of Cp4.1LG11g02200 vs. ExPASy TrEMBL
Match: A0A0A0LLI2 (TLC domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G362410 PE=4 SV=1)

HSP 1 Score: 385 bits (989), Expect = 6.79e-134
Identity = 196/234 (83.76%), Postives = 211/234 (90.17%), Query Frame = 0

Query: 1   MAVTSGRDLDVINVVVLGVIAWTLAFISLRK-LLPKRSFEFCNRLVSTLHACLAVTLASI 60
           M V+  RD DVINV+V GVI+WTL FI LRK + P RSFEFCNRL+ST+HA LAVTLASI
Sbjct: 1   MEVSESRDPDVINVMVYGVISWTLGFILLRKAVFPNRSFEFCNRLISTIHAFLAVTLASI 60

Query: 61  SVQNWRCPICPLASQASPFQMQTLAVTCSYLIYDMVCCHFDKKVNVDNAIHHLVCIVGIA 120
           SVQNWRCPICPLAS++S FQMQTL+V+CSYLIYDMVCCHFDKKV++DN IHHLV IVGIA
Sbjct: 61  SVQNWRCPICPLASKSSSFQMQTLSVSCSYLIYDMVCCHFDKKVSLDNTIHHLVSIVGIA 120

Query: 121 AGFAYQKCGSEMVAALCITEISSPFLHLREILKEIGYRGTDLNLAADIGFAVIFSFGRMV 180
           AG AYQKCGSEMVAAL ITEISSPFLHLREILKEIGY+GTDLNLAADIGFAVIFSF RMV
Sbjct: 121 AGLAYQKCGSEMVAALWITEISSPFLHLREILKEIGYKGTDLNLAADIGFAVIFSFARMV 180

Query: 181 GGPYLTYMTLSATGVPLLIKAMALGLQLVSAYWFYKIVRMVRFKLNNRSTSKNS 233
           GGPYLTY+TL A  VP LIKAMALGLQLVSAYWFYKIVRM+RFKLNNRST K S
Sbjct: 181 GGPYLTYVTLFAN-VPFLIKAMALGLQLVSAYWFYKIVRMIRFKLNNRSTLKKS 233

BLAST of Cp4.1LG11g02200 vs. TAIR 10
Match: AT1G35180.1 (TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein )

HSP 1 Score: 297.0 bits (759), Expect = 1.3e-80
Identity = 144/220 (65.45%), Postives = 181/220 (82.27%), Query Frame = 0

Query: 11  VINVVVLGVIAWTLAFISLRKLLPKRSFEFCNRLVSTLHACLAVTLASISVQNWRCPICP 70
           VI++  +GVI+W L FI +R++    SF+F  R+VSTLHA +AVTLA++S+Q+W CP+CP
Sbjct: 8   VISITTIGVISWGLIFILVRRIFSSYSFDFSTRIVSTLHATIAVTLATLSIQDWSCPVCP 67

Query: 71  LASQASPFQMQTLAVTCSYLIYDMVCCHFDKKVNVDNAIHHLVCIVGIAAGFAYQKCGSE 130
           +AS +S  QM+TLA + SY+IYD++C HFD+ +++DNA+HH VCI+G  AG  YQKCGSE
Sbjct: 68  IASTSSLRQMETLAFSLSYMIYDLICSHFDQVLSIDNAVHHSVCILGFVAGLFYQKCGSE 127

Query: 131 MVAALCITEISSPFLHLREILKEIGYRGTDLNLAADIGFAVIFSFGRMVGGPYLTYMTLS 190
           MVAAL ITEISSPFLHLREILKEIGYR TDLNLAAD+ FA IFS  RMVGGPYL Y+T+S
Sbjct: 128 MVAALWITEISSPFLHLREILKEIGYRDTDLNLAADVCFATIFSLARMVGGPYLVYVTIS 187

Query: 191 ATGVPLLIKAMALGLQLVSAYWFYKIVRMVRFKLNNRSTS 231
           A   P+LIKAMALGLQLVSA+WFYKI++M+R+K   RS S
Sbjct: 188 ADN-PILIKAMALGLQLVSAFWFYKILKMMRYKFIKRSMS 226

BLAST of Cp4.1LG11g02200 vs. TAIR 10
Match: AT1G35170.1 (TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein )

HSP 1 Score: 272.3 bits (695), Expect = 3.6e-73
Identity = 134/220 (60.91%), Postives = 174/220 (79.09%), Query Frame = 0

Query: 11  VINVVVLGVIAWTLAFISLRKLLPKRSFEFCNRLVSTLHACLAVTLASISVQNWRCPICP 70
           +I++  + +I+W L FI +R++    SF+F  R+VSTLHA +AVTLA++S+Q+W CP+CP
Sbjct: 8   IISITTIRIISWGLIFILVRRIFSSYSFDFSTRIVSTLHATIAVTLATLSIQDWSCPVCP 67

Query: 71  LASQASPFQMQTLAVTCSYLIYDMVCCHFDKKVNVDNAIHHLVCIVGIAAGFAYQKCGSE 130
           +AS +S  QM+TLA + SY+IYD++C HFD+ +++DNA+HH VCI+G  AG  YQKCGSE
Sbjct: 68  IASTSSLRQMETLAFSLSYMIYDLICSHFDQVLSIDNAVHHSVCILGFVAGLFYQKCGSE 127

Query: 131 MVAALCITEISSPFLHLREILKEIGYRGTDLNLAADIGFAVIFSFGRMVGGPYLTYMTLS 190
           MVAA+ ITEISSPFLHLREILKEIG R TDLNLAAD+ FA IFS  RMVGGPYL Y+T+ 
Sbjct: 128 MVAAIWITEISSPFLHLREILKEIGCRDTDLNLAADVFFATIFSVARMVGGPYLVYVTIP 187

Query: 191 ATGVPLLIKAMALGLQLVSAYWFYKIVRMVRFKLNNRSTS 231
           A   P+LIK M LGLQLVSA  FYK+++M+R+K   RS S
Sbjct: 188 ADN-PILIKVMGLGLQLVSA--FYKLLKMMRYKFIKRSMS 224

BLAST of Cp4.1LG11g02200 vs. TAIR 10
Match: AT1G45010.1 (TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein )

HSP 1 Score: 257.3 bits (656), Expect = 1.2e-68
Identity = 127/219 (57.99%), Postives = 164/219 (74.89%), Query Frame = 0

Query: 12  INVVVLGVIAWTLAFISLRKLLPKRSFEFCNRLVSTLHACLAVTLASISVQNWRCPICPL 71
           I ++V GVI+W +AFI  R++    SF F NRL+ST HA +AVTLA++SVQ+  CP+CPL
Sbjct: 9   IKIIVFGVISWGVAFILTRRIFSSYSFSFSNRLLSTAHATIAVTLATLSVQDLSCPVCPL 68

Query: 72  ASQASPFQMQTLAVTCSYLIYDMVCCHFDKKVNVDNAIHHLVCIVGIAAGFAYQKCGSEM 131
           AS+ S  QM  +A + SY+IYD++CCHFD+  ++DNA+HH V I+G  AG AYQK GSE+
Sbjct: 69  ASKPSHKQMDVMAFSLSYMIYDLICCHFDQVFSIDNAVHHFVSILGFIAGLAYQKSGSEI 128

Query: 132 VAALCITEISSPFLHLREILKEIGYRGTDLNLAADIGFAVIFSFGRMVGGPYLTYMTLSA 191
           VA L + EISSPF HLREILKEIGY+ T LNLAAD+ FA IF+  R+V GP+L Y++LSA
Sbjct: 129 VATLWVAEISSPFFHLREILKEIGYKDTKLNLAADVCFATIFTLARIVCGPFLVYVSLSA 188

Query: 192 TGVPLLIKAMALGLQLVSAYWFYKIVRMVRFKLNNRSTS 231
              P+ IKAM  GLQLVS +WFYKI  M+R+KL  +  S
Sbjct: 189 DN-PIFIKAMGSGLQLVSIFWFYKIFGMMRYKLFKKPKS 226

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q6ZRR51.3e-1126.34TLC domain-containing protein 5 OS=Homo sapiens OX=9606 GN=TLCD5 PE=2 SV=2[more]
Q0VD421.7e-1126.26TLC domain-containing protein 5 OS=Bos taurus OX=9913 GN=TLCD5 PE=2 SV=1[more]
Q1LXV85.4e-1025.87TLC domain-containing protein 5 OS=Danio rerio OX=7955 GN=tlcd5 PE=2 SV=1[more]
Q3TYE77.1e-1026.11TLC domain-containing protein 5 OS=Mus musculus OX=10090 GN=Tlcd5 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
XP_023545988.17.96e-165100.00transmembrane protein 56-B-like [Cucurbita pepo subsp. pepo][more]
KAG7029404.11.22e-15997.42Transmembrane protein, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6598466.11.73e-15997.00TLC domain-containing protein 5, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_022961950.11.66e-15796.57transmembrane protein 56-B-like [Cucurbita moschata][more]
XP_022996647.15.32e-15494.85transmembrane protein 136-like [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
A0A6J1HDN88.02e-15896.57transmembrane protein 56-B-like OS=Cucurbita moschata OX=3662 GN=LOC111462571 PE... [more]
A0A6J1K2K32.57e-15494.85transmembrane protein 136-like OS=Cucurbita maxima OX=3661 GN=LOC111491828 PE=4 ... [more]
A0A5A7VDR05.00e-13684.62Transmembrane protein 136 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo... [more]
A0A1S3BB195.00e-13684.62transmembrane protein 136 OS=Cucumis melo OX=3656 GN=LOC103487998 PE=4 SV=1[more]
A0A0A0LLI26.79e-13483.76TLC domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G362410 PE=4 SV... [more]
Match NameE-valueIdentityDescription
AT1G35180.11.3e-8065.45TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein [more]
AT1G35170.13.6e-7360.91TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein [more]
AT1G45010.11.2e-6857.99TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006634TRAM/LAG1/CLN8 homology domainSMARTSM00724lag1_27coord: 35..225
e-value: 6.9E-39
score: 145.2
IPR006634TRAM/LAG1/CLN8 homology domainPFAMPF03798TRAM_LAG1_CLN8coord: 39..218
e-value: 1.9E-23
score: 83.2
IPR006634TRAM/LAG1/CLN8 homology domainPROSITEPS50922TLCcoord: 35..225
score: 34.698399
IPR042512TLC domain-containing protein 5PANTHERPTHR31898TRANSMEMBRANE PROTEIN 136coord: 10..231
NoneNo IPR availablePANTHERPTHR31898:SF5SUBFAMILY NOT NAMEDcoord: 10..231

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG11g02200.1Cp4.1LG11g02200.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane