Cp4.1LG11g02000 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG11g02000
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionZinc finger and BTB domain-containing protein 47
LocationCp4.1LG11: 1067341 .. 1067679 (-)
RNA-Seq ExpressionCp4.1LG11g02000
SyntenyCp4.1LG11g02000
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAAGAAGAAACCCCAGAAGACCAAGGAGATTACAGCCGCCATACCTCAAACCTCCGCCTCCAAATCACCCGATGACGCCGCTGCCCAATCGATACAGCCCAGAAAGAGGGGCCGACCTCGTAAGGTCCTCGATGAGCCACAGAACGAACAGGATAACAAGGAACTGCCACCGCCTGAGGTTGTTTCAGATACACCACCGGAGAAGAAAGCCAAAACCACCGTGGATGAGCCACCACCGGCTTCGAAACAAGAACGCGATCAAGAAGAATCCCAATCAGGAGATGGTCCGAGAAGCAGAGGAAGACGAAAGAACAAACCCAGAAAAAGTAGCTGA

mRNA sequence

ATGGGAAAGAAGAAACCCCAGAAGACCAAGGAGATTACAGCCGCCATACCTCAAACCTCCGCCTCCAAATCACCCGATGACGCCGCTGCCCAATCGATACAGCCCAGAAAGAGGGGCCGACCTCGTAAGGTCCTCGATGAGCCACAGAACGAACAGGATAACAAGGAACTGCCACCGCCTGAGGTTGTTTCAGATACACCACCGGAGAAGAAAGCCAAAACCACCGTGGATGAGCCACCACCGGCTTCGAAACAAGAACGCGATCAAGAAGAATCCCAATCAGGAGATGGTCCGAGAAGCAGAGGAAGACGAAAGAACAAACCCAGAAAAAGTAGCTGA

Coding sequence (CDS)

ATGGGAAAGAAGAAACCCCAGAAGACCAAGGAGATTACAGCCGCCATACCTCAAACCTCCGCCTCCAAATCACCCGATGACGCCGCTGCCCAATCGATACAGCCCAGAAAGAGGGGCCGACCTCGTAAGGTCCTCGATGAGCCACAGAACGAACAGGATAACAAGGAACTGCCACCGCCTGAGGTTGTTTCAGATACACCACCGGAGAAGAAAGCCAAAACCACCGTGGATGAGCCACCACCGGCTTCGAAACAAGAACGCGATCAAGAAGAATCCCAATCAGGAGATGGTCCGAGAAGCAGAGGAAGACGAAAGAACAAACCCAGAAAAAGTAGCTGA

Protein sequence

MGKKKPQKTKEITAAIPQTSASKSPDDAAAQSIQPRKRGRPRKVLDEPQNEQDNKELPPPEVVSDTPPEKKAKTTVDEPPPASKQERDQEESQSGDGPRSRGRRKNKPRKSS
Homology
BLAST of Cp4.1LG11g02000 vs. NCBI nr
Match: KAG6598438.1 (hypothetical protein SDJN03_08216, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 159 bits (403), Expect = 1.33e-46
Identity = 94/102 (92.16%), Postives = 95/102 (93.14%), Query Frame = 0

Query: 1   MGKKKPQKTKEITAAIPQTSASKSPDDAAAQSIQPRKRGRPRKVLDEPQNEQDNKELPPP 60
           MGKKKPQKTKEITAAIPQTSASKSPDDAAAQSIQPRKRGRPRKVLDE QN+QDNKELPPP
Sbjct: 1   MGKKKPQKTKEITAAIPQTSASKSPDDAAAQSIQPRKRGRPRKVLDETQNQQDNKELPPP 60

Query: 61  -----EVVSDTPPEKKAKTTVD-EPPPASKQERDQEESQSGD 96
                EVVSDTPPEKKAKTTVD EPPPASKQERDQEESQSGD
Sbjct: 61  PPPRPEVVSDTPPEKKAKTTVDDEPPPASKQERDQEESQSGD 102

BLAST of Cp4.1LG11g02000 vs. NCBI nr
Match: XP_038884964.1 (uncharacterized protein LOC120075548 [Benincasa hispida])

HSP 1 Score: 134 bits (337), Expect = 4.22e-38
Identity = 82/114 (71.93%), Postives = 94/114 (82.46%), Query Frame = 0

Query: 1   MGKKKPQKTKEITAAIPQTSASKSPDDAAAQSIQPRKRGRPRKVLDEPQNEQDNKELPPP 60
           MGKKKPQKTKEI  AI +TSASK  DD   QSIQPRKRGRPRKVLDEPQN+Q+NK+L PP
Sbjct: 1   MGKKKPQKTKEIAVAIAETSASKLADDGIGQSIQPRKRGRPRKVLDEPQNKQENKKLLPP 60

Query: 61  -EVVSDTPPEKKAKTTVDEPPPASKQERDQE-ESQSGDGPRSRGRRKNKPRKSS 112
              V++ PPEKKAKTTVD+PPP S +E  ++ E ++GDG RSRGRRKNKPRKSS
Sbjct: 61  LPEVAENPPEKKAKTTVDQPPPGSMEEGSKQGEPKTGDGSRSRGRRKNKPRKSS 114

BLAST of Cp4.1LG11g02000 vs. NCBI nr
Match: KAA0065239.1 (zinc finger and BTB domain-containing protein 47 [Cucumis melo var. makuwa])

HSP 1 Score: 130 bits (326), Expect = 2.18e-36
Identity = 82/117 (70.09%), Postives = 89/117 (76.07%), Query Frame = 0

Query: 1   MGKKKPQKTKEITAAIPQTSASKSPDDAAAQSIQPRKRGRPRKVLDEPQNEQDNKELPPP 60
           MGKKK QKTKEI  AI +TS SK  DD   QSIQPRKRGRPRKVLDE QNEQ+NK+LPPP
Sbjct: 1   MGKKKTQKTKEIAVAIAETSTSKLADDGIGQSIQPRKRGRPRKVLDEQQNEQENKKLPPP 60

Query: 61  EV----VSDTPPEKKAKTTVDEPPPAS-KQERDQEESQSGDGPRSRGRRKNKPRKSS 112
                 V + PPEKK K TVDEPPP S K+   QEE ++GDG RSRGRRKNKPRKSS
Sbjct: 61  PPLLPEVEENPPEKKIKATVDEPPPGSVKEGSKQEEPKTGDGSRSRGRRKNKPRKSS 117

BLAST of Cp4.1LG11g02000 vs. NCBI nr
Match: KAG7020516.1 (hypothetical protein SDJN02_17201, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 110 bits (274), Expect = 1.75e-28
Identity = 78/121 (64.46%), Postives = 89/121 (73.55%), Query Frame = 0

Query: 1   MGKKKPQKTKEITAAIPQTSASKSPDDAAA----QSIQPRKRGRPRKVLDEPQNEQDNKE 60
           MGKKK QKTK+I+ AI +TS SK PDD  A    QS+QPRKRGRPRKVLDEP    D+K+
Sbjct: 1   MGKKKTQKTKQISVAIAETSTSKLPDDGGAHGGGQSVQPRKRGRPRKVLDEPP---DDKK 60

Query: 61  LPPPEV-VSDTPPEKKAKTTVDEPPP----ASKQERDQEESQSGDGPRSRGRRKNKPRKS 112
           LPPP   V+D P +KK K+T DEPP     ASKQ  + EE +SGDG RSRGRRKNKPRKS
Sbjct: 61  LPPPPADVADKPLQKKGKSTGDEPPDSMEGASKQH-ESEEPKSGDGSRSRGRRKNKPRKS 117

BLAST of Cp4.1LG11g02000 vs. NCBI nr
Match: XP_023002541.1 (uncharacterized protein LOC111496353 [Cucurbita maxima])

HSP 1 Score: 107 bits (266), Expect = 7.28e-27
Identity = 78/121 (64.46%), Postives = 87/121 (71.90%), Query Frame = 0

Query: 1   MGKKKPQKTKEITAAIPQTSASKSPDDAAA----QSIQPRKRGRPRKVLDEPQNEQDNKE 60
           MGKKK QKTK+I+ AI +TS SK PDD       QS QPRKRGRPRKVLDEP +  D K 
Sbjct: 33  MGKKKTQKTKQISVAIAETSTSKLPDDGGGHGGGQSEQPRKRGRPRKVLDEPPD--DKKL 92

Query: 61  LPPPEV-VSDTPPEKKAKTTVDEPP----PASKQERDQEESQSGDGPRSRGRRKNKPRKS 112
           LPPP   V+D P +KK KTT DEPP     ASKQ+ + EE +SGDG RSRGRRKNKPRKS
Sbjct: 93  LPPPAADVADKPLQKKGKTTGDEPPISMEGASKQQ-ESEEPKSGDGSRSRGRRKNKPRKS 150

BLAST of Cp4.1LG11g02000 vs. ExPASy TrEMBL
Match: A0A5A7VIE6 (Zinc finger and BTB domain-containing protein 47 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G005800 PE=4 SV=1)

HSP 1 Score: 130 bits (326), Expect = 1.06e-36
Identity = 82/117 (70.09%), Postives = 89/117 (76.07%), Query Frame = 0

Query: 1   MGKKKPQKTKEITAAIPQTSASKSPDDAAAQSIQPRKRGRPRKVLDEPQNEQDNKELPPP 60
           MGKKK QKTKEI  AI +TS SK  DD   QSIQPRKRGRPRKVLDE QNEQ+NK+LPPP
Sbjct: 1   MGKKKTQKTKEIAVAIAETSTSKLADDGIGQSIQPRKRGRPRKVLDEQQNEQENKKLPPP 60

Query: 61  EV----VSDTPPEKKAKTTVDEPPPAS-KQERDQEESQSGDGPRSRGRRKNKPRKSS 112
                 V + PPEKK K TVDEPPP S K+   QEE ++GDG RSRGRRKNKPRKSS
Sbjct: 61  PPLLPEVEENPPEKKIKATVDEPPPGSVKEGSKQEEPKTGDGSRSRGRRKNKPRKSS 117

BLAST of Cp4.1LG11g02000 vs. ExPASy TrEMBL
Match: A0A6J1KLK8 (uncharacterized protein LOC111496353 OS=Cucurbita maxima OX=3661 GN=LOC111496353 PE=4 SV=1)

HSP 1 Score: 107 bits (266), Expect = 3.53e-27
Identity = 78/121 (64.46%), Postives = 87/121 (71.90%), Query Frame = 0

Query: 1   MGKKKPQKTKEITAAIPQTSASKSPDDAAA----QSIQPRKRGRPRKVLDEPQNEQDNKE 60
           MGKKK QKTK+I+ AI +TS SK PDD       QS QPRKRGRPRKVLDEP +  D K 
Sbjct: 33  MGKKKTQKTKQISVAIAETSTSKLPDDGGGHGGGQSEQPRKRGRPRKVLDEPPD--DKKL 92

Query: 61  LPPPEV-VSDTPPEKKAKTTVDEPP----PASKQERDQEESQSGDGPRSRGRRKNKPRKS 112
           LPPP   V+D P +KK KTT DEPP     ASKQ+ + EE +SGDG RSRGRRKNKPRKS
Sbjct: 93  LPPPAADVADKPLQKKGKTTGDEPPISMEGASKQQ-ESEEPKSGDGSRSRGRRKNKPRKS 150

BLAST of Cp4.1LG11g02000 vs. ExPASy TrEMBL
Match: A0A0A0LRH2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G361610 PE=4 SV=1)

HSP 1 Score: 105 bits (263), Expect = 3.74e-27
Identity = 74/115 (64.35%), Postives = 85/115 (73.91%), Query Frame = 0

Query: 1   MGKKKPQKTKEITAAIPQTSASKSPDDAA-AQSIQPRKRGRPRKVLDEPQNEQDNKELPP 60
           MGKKK QKTKEI  AI +TS SK  DD    Q IQPRKRGRPRKVL+E QNEQ++K+ PP
Sbjct: 1   MGKKKTQKTKEIAVAIAETSTSKLADDGIIGQPIQPRKRGRPRKVLEEQQNEQESKKPPP 60

Query: 61  PEV-VSDTPPEKKAKTTVDEPPPASKQERDQEES-QSGDGPRSRGRRKNKPRKSS 112
           P + V++ PPEKK K TVDE    S  E  +EE  ++GDG RSRGRRKNKPRKSS
Sbjct: 61  PLLEVAENPPEKKIKGTVDEAALGSMIEGSKEEEPKTGDGSRSRGRRKNKPRKSS 115

BLAST of Cp4.1LG11g02000 vs. ExPASy TrEMBL
Match: A0A7N2KSD2 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.53e-08
Identity = 58/137 (42.34%), Postives = 74/137 (54.01%), Query Frame = 0

Query: 1   MGKKKPQKTKEITAAIPQTSASKSPDDAAAQSIQPRKRGRPRKVLDEPQNEQDNKELPPP 60
           MGKKKPQKTKE++ AI + S +        QS  PRKRGRPRK++++P++ QD KE    
Sbjct: 1   MGKKKPQKTKELSVAIAEASITGDEGQQQPQSQTPRKRGRPRKIIEKPES-QDKKEEESE 60

Query: 61  EVVS---DTPPE---KKAKTTVDEPPP--------------ASKQERDQEESQS-----G 112
            V     DT  E   K+ KT+ +E                 ASK+E DQ E +       
Sbjct: 61  SVAKEAEDTTNESQSKRVKTSEEEEEEQPKGEGSSASMGLGASKKEEDQTEKREVLPKEP 120

BLAST of Cp4.1LG11g02000 vs. ExPASy TrEMBL
Match: A0A5N6RLL3 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_018150 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.69e-08
Identity = 49/125 (39.20%), Postives = 73/125 (58.40%), Query Frame = 0

Query: 1   MGKKKPQKTKEITAAIPQTSASKSPDDAAAQSIQPRKRGRPRKVLDEPQNEQDNKELPPP 60
           MGKKK QKTKE++ AI + S++       +Q   PRKRGRPRK++++P+++   +E P  
Sbjct: 1   MGKKKHQKTKELSVAIAEASSTGDETQQESQPQTPRKRGRPRKIVEKPESQSGKEEEP-- 60

Query: 61  EVVSDTPPEKKAKTTVDEPPPASKQERDQEESQSGDG-------------PRSRGRRKNK 112
               D+ P K+ KT  +E     +Q++ Q++   G+G             PRSR RRK+K
Sbjct: 61  ---EDSQP-KQLKTGEEE-----QQQQKQQQQLKGEGSKEEDQSEKREVPPRSRARRKSK 114

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6598438.11.33e-4692.16hypothetical protein SDJN03_08216, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_038884964.14.22e-3871.93uncharacterized protein LOC120075548 [Benincasa hispida][more]
KAA0065239.12.18e-3670.09zinc finger and BTB domain-containing protein 47 [Cucumis melo var. makuwa][more]
KAG7020516.11.75e-2864.46hypothetical protein SDJN02_17201, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_023002541.17.28e-2764.46uncharacterized protein LOC111496353 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
A0A5A7VIE61.06e-3670.09Zinc finger and BTB domain-containing protein 47 OS=Cucumis melo var. makuwa OX=... [more]
A0A6J1KLK83.53e-2764.46uncharacterized protein LOC111496353 OS=Cucurbita maxima OX=3661 GN=LOC111496353... [more]
A0A0A0LRH23.74e-2764.35Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G361610 PE=4 SV=1[more]
A0A7N2KSD21.53e-0842.34Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1[more]
A0A5N6RLL32.69e-0839.20Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_018150 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 12..29
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..112
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 66..101
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 39..54
NoneNo IPR availablePANTHERPTHR37615NUCLEOPORIN NUP159-LIKEcoord: 1..112

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG11g02000.1Cp4.1LG11g02000.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane