Cp4.1LG11g01910 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG11g01910
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	SANT domain-containing protein
Location	Cp4.1LG11: 1077068 .. 1077349 (-)
RNA-Seq Expression	Cp4.1LG11g01910
Synteny	Cp4.1LG11g01910

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACATCTTCTTCTTCTTCGTCGTCTTCTTCAAGCTGGAGTTCAAAGCAAAACAAGGTGTTCGAAAATGCTCTGACGGTGTACGACAAGGACTCGCCGGACCGGTGGCAGAACTTGGCAAGTTCCGTCGGCGGGAAGACGGCGGAGGAAGTGAAGAGGCACTACGAGATGCTGGTGGAGGACGTCCACAATATCGAGACCGGCAGAGTTCCTTTGCCCAATTATTCTAAACCTCCTAAACACTATTCCTCCAACACCTTTCTTGACGAAGAACAAACGTAA

mRNA sequence

ATGACATCTTCTTCTTCTTCGTCGTCTTCTTCAAGCTGGAGTTCAAAGCAAAACAAGGTGTTCGAAAATGCTCTGACGGTGTACGACAAGGACTCGCCGGACCGGTGGCAGAACTTGGCAAGTTCCGTCGGCGGGAAGACGGCGGAGGAAGTGAAGAGGCACTACGAGATGCTGGTGGAGGACGTCCACAATATCGAGACCGGCAGAGTTCCTTTGCCCAATTATTCTAAACCTCCTAAACACTATTCCTCCAACACCTTTCTTGACGAAGAACAAACGTAA

Coding sequence (CDS)

ATGACATCTTCTTCTTCTTCGTCGTCTTCTTCAAGCTGGAGTTCAAAGCAAAACAAGGTGTTCGAAAATGCTCTGACGGTGTACGACAAGGACTCGCCGGACCGGTGGCAGAACTTGGCAAGTTCCGTCGGCGGGAAGACGGCGGAGGAAGTGAAGAGGCACTACGAGATGCTGGTGGAGGACGTCCACAATATCGAGACCGGCAGAGTTCCTTTGCCCAATTATTCTAAACCTCCTAAACACTATTCCTCCAACACCTTTCTTGACGAAGAACAAACGTAA

Protein sequence

MTSSSSSSSSSSWSSKQNKVFENALTVYDKDSPDRWQNLASSVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYSKPPKHYSSNTFLDEEQT

Homology

[Close]

BLAST of Cp4.1LG11g01910 vs. ExPASy Swiss-Prot
Match: Q1A173 (Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.5e-22
Identity = 55/84 (65.48%), Postives = 67/84 (79.76%), Query Frame = 0


Query: 3  SSSSSSSSSSWSSKQNKVFENALTVYDKDSPDRWQNLASSVGGKTAEEVKRHYEMLVEDV 62
          +S+S SS S W+  QNK+FE AL VYDKD+PDRW N+A +VGGKT EEVKRHY++LVED+
Sbjct: 2  ASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVEDL 61

Query: 63 HNIETGRVPLPNYSKPPKHYSSNT 87
           NIETGRVPLPNY    K + SN+
Sbjct: 62 INIETGRVPLPNY----KTFESNS 81

[Close]

BLAST of Cp4.1LG11g01910 vs. ExPASy Swiss-Prot
Match: Q8GW75 (Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 2.5e-22
Identity = 53/73 (72.60%), Postives = 63/73 (86.30%), Query Frame = 0


Query: 3  SSSSSSSSSSWSSKQNKVFENALTVYDKDSPDRWQNLASSVGGKTAEEVKRHYEMLVEDV 62
          +SSS SSSSSW+SKQNK+FE AL VYDKD+PDRWQN+A +VG K+AEEVKRHY++LVED+
Sbjct: 2  ASSSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVEDL 61

Query: 63 HNIETGRVPLPNY 76
           NIE   VPLP Y
Sbjct: 62 MNIEQDLVPLPKY 74

[Close]

BLAST of Cp4.1LG11g01910 vs. ExPASy Swiss-Prot
Match: F4JVB8 (Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 9.4e-22
Identity = 49/74 (66.22%), Postives = 61/74 (82.43%), Query Frame = 0


Query: 2  TSSSSSSSSSSWSSKQNKVFENALTVYDKDSPDRWQNLASSVGGKTAEEVKRHYEMLVED 61
          +SS SS SS SW++KQNK FE AL  YD+D+P+RWQN+A  VGGKT EEVKRHYE+LV+D
Sbjct: 3  SSSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQD 62

Query: 62 VHNIETGRVPLPNY 76
          +++IE G VP PNY
Sbjct: 63 INSIENGHVPFPNY 76

[Close]

BLAST of Cp4.1LG11g01910 vs. ExPASy Swiss-Prot
Match: Q6NNN0 (Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 1.8e-20
Identity = 46/73 (63.01%), Postives = 63/73 (86.30%), Query Frame = 0


Query: 3  SSSSSSSSSSWSSKQNKVFENALTVYDKDSPDRWQNLASSVGGKTAEEVKRHYEMLVEDV 62
          +S+S SSS+SW+ K+NK+FE AL  YD+D+PDRW N+A +VGGK+AEEV+RHYE+L+ DV
Sbjct: 2  ASNSMSSSASWTRKENKLFERALATYDQDTPDRWHNVARAVGGKSAEEVRRHYELLIRDV 61

Query: 63 HNIETGRVPLPNY 76
          ++IE+GR P PNY
Sbjct: 62 NDIESGRYPHPNY 74

[Close]

BLAST of Cp4.1LG11g01910 vs. ExPASy Swiss-Prot
Match: Q9SIJ5 (Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 7.5e-19
Identity = 47/91 (51.65%), Postives = 61/91 (67.03%), Query Frame = 0


Query: 2  TSSSSSSSSSSWSSKQNKVFENALTVYDKDSPDRWQNLASSVGGKTAEEVKRHYEMLVED 61
          + S SS  S SW+ KQNK FE AL VYD+D+PDRW N+A +VGGKT EE KR Y++LV D
Sbjct: 3  SGSMSSYGSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRD 62

Query: 62 VHNIETGRVPLPNYSKPPKHYSSNTFLDEEQ 93
          + +IE G VP P+Y     + +     DEE+
Sbjct: 63 IESIENGHVPFPDYKTTTGNSNRGRLRDEEK 93

[Close]

BLAST of Cp4.1LG11g01910 vs. NCBI nr
Match: XP_023547022.1 (protein RADIALIS-like 3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 185 bits (469), Expect = 9.59e-59
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1  MTSSSSSSSSSSWSSKQNKVFENALTVYDKDSPDRWQNLASSVGGKTAEEVKRHYEMLVE 60
          MTSSSSSSSSSSWSSKQNKVFENALTVYDKDSPDRWQNLASSVGGKTAEEVKRHYEMLVE
Sbjct: 1  MTSSSSSSSSSSWSSKQNKVFENALTVYDKDSPDRWQNLASSVGGKTAEEVKRHYEMLVE 60

Query: 61 DVHNIETGRVPLPNYSKPPKHYSSNTFLDEEQT 93
          DVHNIETGRVPLPNYSKPPKHYSSNTFLDEEQT
Sbjct: 61 DVHNIETGRVPLPNYSKPPKHYSSNTFLDEEQT 93

[Close]

BLAST of Cp4.1LG11g01910 vs. NCBI nr
Match: XP_022997502.1 (protein RADIALIS-like 4 [Cucurbita maxima])

HSP 1 Score: 172 bits (436), Expect = 1.04e-53
Identity = 88/92 (95.65%), Postives = 88/92 (95.65%), Query Frame = 0


Query: 1  MTSSSSSSSSSSWSSKQNKVFENALTVYDKDSPDRWQNLASSVGGKTAEEVKRHYEMLVE 60
          MTSSSSSSSSS WSSKQNKVFENALTVYDKDSPDRWQ LASSVGGKTAEEVKRHYEMLVE
Sbjct: 1  MTSSSSSSSSSCWSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVE 60

Query: 61 DVHNIETGRVPLPNYSKPPKHYSSNTFLDEEQ 92
          DVHNIETGRVPLPNYSKP KH SSNTFLDEEQ
Sbjct: 61 DVHNIETGRVPLPNYSKPSKHCSSNTFLDEEQ 92

[Close]

BLAST of Cp4.1LG11g01910 vs. NCBI nr
Match: KAG7029384.1 (Protein RADIALIS-like 6, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 165 bits (418), Expect = 4.52e-51
Identity = 80/84 (95.24%), Postives = 80/84 (95.24%), Query Frame = 0


Query: 9  SSSSWSSKQNKVFENALTVYDKDSPDRWQNLASSVGGKTAEEVKRHYEMLVEDVHNIETG 68
          SSSSWSSKQNKVFENALTVYDKDSPDRWQ LASSVGGKTAEEVKRHYEMLVEDVHNIETG
Sbjct: 3  SSSSWSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDVHNIETG 62

Query: 69 RVPLPNYSKPPKHYSSNTFLDEEQ 92
          RVPLPNYSKP KHYS N FLDEEQ
Sbjct: 63 RVPLPNYSKPRKHYSCNAFLDEEQ 86

[Close]

BLAST of Cp4.1LG11g01910 vs. NCBI nr
Match: KAG6598441.1 (Protein RADIALIS-like 6, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 165 bits (418), Expect = 4.81e-51
Identity = 80/84 (95.24%), Postives = 80/84 (95.24%), Query Frame = 0


Query: 9  SSSSWSSKQNKVFENALTVYDKDSPDRWQNLASSVGGKTAEEVKRHYEMLVEDVHNIETG 68
          SSSSWSSKQNKVFENALTVYDKDSPDRWQ LASSVGGKTAEEVKRHYEMLVEDVHNIETG
Sbjct: 3  SSSSWSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDVHNIETG 62

Query: 69 RVPLPNYSKPPKHYSSNTFLDEEQ 92
          RVPLPNYSKP KHYS N FLDEEQ
Sbjct: 63 RVPLPNYSKPRKHYSCNAFLDEEQ 86

[Close]

BLAST of Cp4.1LG11g01910 vs. NCBI nr
Match: XP_008444713.1 (PREDICTED: protein RADIALIS-like 4 [Cucumis melo])

HSP 1 Score: 154 bits (389), Expect = 1.53e-46
Identity = 79/91 (86.81%), Postives = 84/91 (92.31%), Query Frame = 0


Query: 2  TSSSSSSSSSSWSSKQNKVFENALTVYDKDSPDRWQNLASSVGGKTAEEVKRHYEMLVED 61
          T+SSSSSSSSSWSSKQNK+FENALTVYDKDSPDRWQ LA +VGGKTA+EVKRHYEMLVED
Sbjct: 5  TTSSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVED 64

Query: 62 VHNIETGRVPLPNYSKPPKHYSSNTFLDEEQ 92
          VHNIETG+VPLPNYSK   HYS N FLDEEQ
Sbjct: 65 VHNIETGKVPLPNYSK---HYSYNNFLDEEQ 92

[Close]

BLAST of Cp4.1LG11g01910 vs. ExPASy TrEMBL
Match: A0A6J1K580 (protein RADIALIS-like 4 OS=Cucurbita maxima OX=3661 GN=LOC111492400 PE=4 SV=1)

HSP 1 Score: 172 bits (436), Expect = 5.03e-54
Identity = 88/92 (95.65%), Postives = 88/92 (95.65%), Query Frame = 0


Query: 1  MTSSSSSSSSSSWSSKQNKVFENALTVYDKDSPDRWQNLASSVGGKTAEEVKRHYEMLVE 60
          MTSSSSSSSSS WSSKQNKVFENALTVYDKDSPDRWQ LASSVGGKTAEEVKRHYEMLVE
Sbjct: 1  MTSSSSSSSSSCWSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVE 60

Query: 61 DVHNIETGRVPLPNYSKPPKHYSSNTFLDEEQ 92
          DVHNIETGRVPLPNYSKP KH SSNTFLDEEQ
Sbjct: 61 DVHNIETGRVPLPNYSKPSKHCSSNTFLDEEQ 92

[Close]

BLAST of Cp4.1LG11g01910 vs. ExPASy TrEMBL
Match: A0A1S3BBR2 (protein RADIALIS-like 4 OS=Cucumis melo OX=3656 GN=LOC103487968 PE=4 SV=1)

HSP 1 Score: 154 bits (389), Expect = 7.41e-47
Identity = 79/91 (86.81%), Postives = 84/91 (92.31%), Query Frame = 0


Query: 2  TSSSSSSSSSSWSSKQNKVFENALTVYDKDSPDRWQNLASSVGGKTAEEVKRHYEMLVED 61
          T+SSSSSSSSSWSSKQNK+FENALTVYDKDSPDRWQ LA +VGGKTA+EVKRHYEMLVED
Sbjct: 5  TTSSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVED 64

Query: 62 VHNIETGRVPLPNYSKPPKHYSSNTFLDEEQ 92
          VHNIETG+VPLPNYSK   HYS N FLDEEQ
Sbjct: 65 VHNIETGKVPLPNYSK---HYSYNNFLDEEQ 92

[Close]

BLAST of Cp4.1LG11g01910 vs. ExPASy TrEMBL
Match: A0A0A0LNL9 (SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G361640 PE=4 SV=1)

HSP 1 Score: 149 bits (377), Expect = 5.01e-45
Identity = 78/92 (84.78%), Postives = 85/92 (92.39%), Query Frame = 0


Query: 2  TSSSSSSSSSSWSSKQNKVFENALTVYDKDSPDRWQNLASSVGGKTAEEVKRHYEMLVED 61
          T+SSSSSSSSSWSSKQNK+FENALTVYDKDSPDRWQ LA +VGGKTA+EVKRHYEMLVED
Sbjct: 5  TTSSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVED 64

Query: 62 VHNIETGRVPLPNYSKPPKHYS-SNTFLDEEQ 92
          VHNIETG+VPLPNYSK   HYS +N F+DEEQ
Sbjct: 65 VHNIETGKVPLPNYSK---HYSYNNNFVDEEQ 93

[Close]

BLAST of Cp4.1LG11g01910 vs. ExPASy TrEMBL
Match: A0A6J1KQS6 (protein RADIALIS-like 4 OS=Cucurbita maxima OX=3661 GN=LOC111496369 PE=4 SV=1)

HSP 1 Score: 148 bits (374), Expect = 1.39e-44
Identity = 77/90 (85.56%), Postives = 80/90 (88.89%), Query Frame = 0


Query: 3  SSSSSSSSSSWSSKQNKVFENALTVYDKDSPDRWQNLASSVGGKTAEEVKRHYEMLVEDV 62
          SSSSSSSS+ WSSKQNKVFENALTVYDKDSPDRWQ LA +VGGKTAEEVKRHYEMLVEDV
Sbjct: 4  SSSSSSSSNVWSSKQNKVFENALTVYDKDSPDRWQKLAGAVGGKTAEEVKRHYEMLVEDV 63

Query: 63 HNIETGRVPLPNYSKPPKHYSSNTFLDEEQ 92
          HNIE GR+PLPNYS   K Y SN FLDEEQ
Sbjct: 64 HNIEIGRIPLPNYSNSSKQYYSN-FLDEEQ 92

[Close]

BLAST of Cp4.1LG11g01910 vs. ExPASy TrEMBL
Match: A0A6J1HEM1 (protein RADIALIS-like 6 OS=Cucurbita moschata OX=3662 GN=LOC111462781 PE=4 SV=1)

HSP 1 Score: 145 bits (366), Expect = 1.31e-43
Identity = 74/77 (96.10%), Postives = 74/77 (96.10%), Query Frame = 0


Query: 4  SSSSSSSSSWSSKQNKVFENALTVYDKDSPDRWQNLASSVGGKTAEEVKRHYEMLVEDVH 63
          SSSSSSSSSWSSKQNKVFENALTVYDKDSPDRWQ LASSVGGKTAEEVKRHYEMLVEDVH
Sbjct: 3  SSSSSSSSSWSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDVH 62

Query: 64 NIETGRVPLPNYSKPPK 80
          NIETGRVPLPNYS P K
Sbjct: 63 NIETGRVPLPNYSTPSK 79

[Close]

BLAST of Cp4.1LG11g01910 vs. TAIR 10
Match: AT1G75250.1 (RAD-like 6 )

HSP 1 Score: 106.7 bits (265), Expect = 1.0e-23
Identity = 55/84 (65.48%), Postives = 67/84 (79.76%), Query Frame = 0


Query: 3  SSSSSSSSSSWSSKQNKVFENALTVYDKDSPDRWQNLASSVGGKTAEEVKRHYEMLVEDV 62
          +S+S SS S W+  QNK+FE AL VYDKD+PDRW N+A +VGGKT EEVKRHY++LVED+
Sbjct: 2  ASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVEDL 61

Query: 63 HNIETGRVPLPNYSKPPKHYSSNT 87
           NIETGRVPLPNY    K + SN+
Sbjct: 62 INIETGRVPLPNY----KTFESNS 81

[Close]

BLAST of Cp4.1LG11g01910 vs. TAIR 10
Match: AT1G75250.2 (RAD-like 6 )

HSP 1 Score: 106.7 bits (265), Expect = 1.0e-23
Identity = 55/84 (65.48%), Postives = 67/84 (79.76%), Query Frame = 0


Query: 3  SSSSSSSSSSWSSKQNKVFENALTVYDKDSPDRWQNLASSVGGKTAEEVKRHYEMLVEDV 62
          +S+S SS S W+  QNK+FE AL VYDKD+PDRW N+A +VGGKT EEVKRHY++LVED+
Sbjct: 2  ASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVEDL 61

Query: 63 HNIETGRVPLPNYSKPPKHYSSNT 87
           NIETGRVPLPNY    K + SN+
Sbjct: 62 INIETGRVPLPNY----KTFESNS 81

[Close]

BLAST of Cp4.1LG11g01910 vs. TAIR 10
Match: AT1G19510.1 (RAD-like 5 )

HSP 1 Score: 105.9 bits (263), Expect = 1.8e-23
Identity = 53/73 (72.60%), Postives = 63/73 (86.30%), Query Frame = 0


Query: 3  SSSSSSSSSSWSSKQNKVFENALTVYDKDSPDRWQNLASSVGGKTAEEVKRHYEMLVEDV 62
          +SSS SSSSSW+SKQNK+FE AL VYDKD+PDRWQN+A +VG K+AEEVKRHY++LVED+
Sbjct: 2  ASSSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVEDL 61

Query: 63 HNIETGRVPLPNY 76
           NIE   VPLP Y
Sbjct: 62 MNIEQDLVPLPKY 74

[Close]

BLAST of Cp4.1LG11g01910 vs. TAIR 10
Match: AT4G39250.1 (RAD-like 1 )

HSP 1 Score: 104.0 bits (258), Expect = 6.7e-23
Identity = 49/74 (66.22%), Postives = 61/74 (82.43%), Query Frame = 0


Query: 2  TSSSSSSSSSSWSSKQNKVFENALTVYDKDSPDRWQNLASSVGGKTAEEVKRHYEMLVED 61
          +SS SS SS SW++KQNK FE AL  YD+D+P+RWQN+A  VGGKT EEVKRHYE+LV+D
Sbjct: 3  SSSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQD 62

Query: 62 VHNIETGRVPLPNY 76
          +++IE G VP PNY
Sbjct: 63 INSIENGHVPFPNY 76

[Close]

BLAST of Cp4.1LG11g01910 vs. TAIR 10
Match: AT2G21650.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 94.4 bits (233), Expect = 5.3e-20
Identity = 47/91 (51.65%), Postives = 61/91 (67.03%), Query Frame = 0


Query: 2  TSSSSSSSSSSWSSKQNKVFENALTVYDKDSPDRWQNLASSVGGKTAEEVKRHYEMLVED 61
          + S SS  S SW+ KQNK FE AL VYD+D+PDRW N+A +VGGKT EE KR Y++LV D
Sbjct: 3  SGSMSSYGSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRD 62

Query: 62 VHNIETGRVPLPNYSKPPKHYSSNTFLDEEQ 93
          + +IE G VP P+Y     + +     DEE+
Sbjct: 63 IESIENGHVPFPDYKTTTGNSNRGRLRDEEK 93

The following BLAST results are available for this feature:

BLAST of Cp4.1LG11g01910 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1A173	1.5e-22	65.48	Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1	[more]
Q8GW75	2.5e-22	72.60	Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1	[more]
F4JVB8	9.4e-22	66.22	Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1	[more]
Q6NNN0	1.8e-20	63.01	Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1	[more]
Q9SIJ5	7.5e-19	51.65	Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1	[more]

BLAST of Cp4.1LG11g01910 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023547022.1	9.59e-59	100.00	protein RADIALIS-like 3 [Cucurbita pepo subsp. pepo]	[more]
XP_022997502.1	1.04e-53	95.65	protein RADIALIS-like 4 [Cucurbita maxima]	[more]
KAG7029384.1	4.52e-51	95.24	Protein RADIALIS-like 6, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6598441.1	4.81e-51	95.24	Protein RADIALIS-like 6, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_008444713.1	1.53e-46	86.81	PREDICTED: protein RADIALIS-like 4 [Cucumis melo]	[more]

BLAST of Cp4.1LG11g01910 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K580	5.03e-54	95.65	protein RADIALIS-like 4 OS=Cucurbita maxima OX=3661 GN=LOC111492400 PE=4 SV=1	[more]
A0A1S3BBR2	7.41e-47	86.81	protein RADIALIS-like 4 OS=Cucumis melo OX=3656 GN=LOC103487968 PE=4 SV=1	[more]
A0A0A0LNL9	5.01e-45	84.78	SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G361640 PE=4 S...	[more]
A0A6J1KQS6	1.39e-44	85.56	protein RADIALIS-like 4 OS=Cucurbita maxima OX=3661 GN=LOC111496369 PE=4 SV=1	[more]
A0A6J1HEM1	1.31e-43	96.10	protein RADIALIS-like 6 OS=Cucurbita moschata OX=3662 GN=LOC111462781 PE=4 SV=1	[more]

BLAST of Cp4.1LG11g01910 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G75250.1	1.0e-23	65.48	RAD-like 6	[more]
AT1G75250.2	1.0e-23	65.48	RAD-like 6	[more]
AT1G19510.1	1.8e-23	72.60	RAD-like 5	[more]
AT4G39250.1	6.7e-23	66.22	RAD-like 1	[more]
AT2G21650.1	5.3e-20	51.65	Homeodomain-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 9..61 e-value: 1.5E-4 score: 31.2
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 5..59 score: 6.237266
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 21..59 e-value: 6.96167E-4 score: 32.5474
None	No IPR available	GENE3D	1.10.10.60		coord: 3..72 e-value: 6.8E-23 score: 82.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..93
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 78..93
None	No IPR available	PANTHER	PTHR43952:SF52	MYB FAMILY TRANSCRIPTION FACTOR	coord: 8..92
IPR044636	Transcription factor RADIALIS-like	PANTHER	PTHR43952	MYB FAMILY TRANSCRIPTION FACTOR-RELATED	coord: 8..92
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 12..66

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG11g01910.1	Cp4.1LG11g01910.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003700	DNA-binding transcription factor activity