Cp4.1LG11g00920 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG11g00920
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG11: 144236 .. 145658 (+)
RNA-Seq ExpressionCp4.1LG11g00920
SyntenyCp4.1LG11g00920
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGTGCTGATGTGGCTCACATCTTCTTCAAAGGATCTAGCTAATCCAAAATCAGCAATTTTAGCTCGAAGCCTTGAGTCCAGCAGTATGTTACTGGCCTTGATGTCTCTGTGAATGATCTTGTTTTTTGAGTTCTCATGCAGGTAAGCCAACCCTTCAACCGTTCCCACAATAATCTCAAACCTCTTCTCCCAATTCAGCGATTTACCTCTTTCTCCATCTGCATATAGTTTCCATAGCTAATCAGAAGAAATGTTGATACAAGTGATTCCATTGAAATGATGGTGTCAAGATTTACCAAAAATGAAGCGGTCCAGACTCCTGTTGGCAAGGAATTCATACACCAACAGGCTTTCAGGTCCAGAGCAACTACACCCAAGCAACCTCACTAAATTTTTGTGCTCCACACTGCTAATTATGTTGACTTCATTGTAAAAATCTGCTGCTCTATGTTTGTTATTGAAGAACAGCCTCTTCACAGCTATCTCTCTTCCATCCGACAGAACTCCCTATAGATAAAGACCTCAGTGTTTGAGCTATACATACTAGTTGGATGCTTGAGGCAAACAAAACAAGACTTGCCTTATAAACGGTGCCAAATCCTCCTTGTCCAAGCTTGTTAGCCTCCGCAAAGGACCCTGTTGCCTTTTCAAGGGTAGAGTACTTGAAATTCAAGCTGCTATTGTTTAGTGTTTTTGCCATCTTGTTTACATCGTTTGAACCTTTCAATCCATACATAAATGCTCATCAGGTGATCTCAATTAATAAGTAATCAATCTGTTCTGTTTTTCAAGTTCTTGGGACTTGAACTAACAATGAATTGAAAGGCAGTGTTTTAAGTTTACCTCTTCGTTTGTTGTTTACATATCTGTTATTCCAGATGTAGATGCCAATCAACACTCCAACGACTAAAACAGCAACAGAGCTCACCAGCGAGACTACAATTGCTACAATGGTGCCTGCAGAGTGGGTGAATGGGATTTCCACATTAAGTTCGAACCAGGTACAAGTGGTGTAGTTGAAAACTTGAAATGAAATATAGCGTATAACATCAATTTTAGGCCATACCTCTTGACCTTGTTGCTTGAGCTTCTGCATTTAAGAAGTCAACATTAGAGTATCTCATGAAACAACCTGTGTTGAGGGCTCTTGCTTCAGATCGAGGCAAGCACTTCAAGATAGAAGCAGAGGCGTTTTGCAAACAGGAAGTGCAGGAGCTGCGATTCAGATTCCTCCAGCACTGAGCCAACAAGTAAACCGAGGCATTGGGGGTTCCAGGGAGAGCCACTTGAATTCTCGCATACCCTCCATTGTTGGGTGCAGTTTCGACTGCACGGGCCACAGCCTGCCTGGTCGACTGTCCATAAACGGAGTTGGTGATGGAATTGTTACCGCACACAGCCCTGTCAAGAGGCCCTGA

mRNA sequence

ATGGCAATGCCAATCAACACTCCAACGACTAAAACAGCAACAGAGCTCACCAGCGAGACTACAATTGCTACAATGGTGCCTGCAGAGTGGGTGAATGGGATTTCCACATTAAGTTCGAACCAGGGCTCTTGCTTCAGATCGAGGCAAGCACTTCAAGATAGAAGCAGAGGCGTTTTGCAAACAGGAAGTGCAGGAGCTGCGATTCAGATTCCTCCAGCACTGAGCCAACAAGTAAACCGAGGCATTGGGGGTTCCAGGGAGAGCCACTTGAATTCTCGCATACCCTCCATTGTTGGGTGCAGTTTCGACTGCACGGGCCACAGCCTGCCTGGTCGACTGTCCATAAACGGAGTTGGTGATGGAATTGTTACCGCACACAGCCCTGTCAAGAGGCCCTGA

Coding sequence (CDS)

ATGGCAATGCCAATCAACACTCCAACGACTAAAACAGCAACAGAGCTCACCAGCGAGACTACAATTGCTACAATGGTGCCTGCAGAGTGGGTGAATGGGATTTCCACATTAAGTTCGAACCAGGGCTCTTGCTTCAGATCGAGGCAAGCACTTCAAGATAGAAGCAGAGGCGTTTTGCAAACAGGAAGTGCAGGAGCTGCGATTCAGATTCCTCCAGCACTGAGCCAACAAGTAAACCGAGGCATTGGGGGTTCCAGGGAGAGCCACTTGAATTCTCGCATACCCTCCATTGTTGGGTGCAGTTTCGACTGCACGGGCCACAGCCTGCCTGGTCGACTGTCCATAAACGGAGTTGGTGATGGAATTGTTACCGCACACAGCCCTGTCAAGAGGCCCTGA

Protein sequence

MAMPINTPTTKTATELTSETTIATMVPAEWVNGISTLSSNQGSCFRSRQALQDRSRGVLQTGSAGAAIQIPPALSQQVNRGIGGSRESHLNSRIPSIVGCSFDCTGHSLPGRLSINGVGDGIVTAHSPVKRP
Homology
[Close]
BLAST of Cp4.1LG11g00920 vs. NCBI nr
Match: KAG7020093.1 (hypothetical protein SDJN02_16775, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 149 bits (376), Expect = 9.62e-41
Identity = 88/148 (59.46%), Postives = 103/148 (69.59%), Query Frame = 0 

Query: 1   MAMPINTPTTKTATELTSETTIATMVPAEWVNGISTLS---------------SNQGSCF 60
           +++PI TP TKTA ELT+E TIA M+PAE V+     S               S +G CF
Sbjct: 179 ISIPITTPATKTAIELTTEITIAIMLPAEIVHSKFNSSFPIQEVNARVSDEAASVEGPCF 238

Query: 61  RSRQALQDRSRGVLQTGSAGAAIQIPPALSQQVNRGIGGSRESHLNSRIPSIVGCSFDCT 120
             RQA +DRSRGVLQTGSAGAA QI PALSQQV+R IGGSR+ H NS IPSIVGC+ +C+
Sbjct: 239 GLRQAFEDRSRGVLQTGSAGAAFQILPALSQQVDREIGGSRDRHFNSGIPSIVGCNVNCS 298

Query: 121 GHSLPGRLSINGVG-DGIVTAHSPVKRP 132
            HSLPGRL   GVG +G V AHSPV+RP
Sbjct: 299 AHSLPGRLPKKGVGSNGGVAAHSPVQRP 326

The following BLAST results are available for this feature:
BLAST of Cp4.1LG11g00920 vs.
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG11g00920 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7020093.19.62e-4159.46hypothetical protein SDJN02_16775, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Cp4.1LG11g00920 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG11g00920 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG11g00920.1Cp4.1LG11g00920.1mRNA