Cp4.1LG11g00890 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG11g00890
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionProtein of Unknown Function (DUF239)
LocationCp4.1LG11: 148525 .. 151075 (+)
RNA-Seq ExpressionCp4.1LG11g00890
SyntenyCp4.1LG11g00890
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GGAGAAGAACCCACCGCCCCTCCAAACAATTCATATTCGTATATTCTCATATATTCATATATTCATATATTCATATATTCATATTGTTGCCCCCTTTAATCTCAAAAGCTAAAGTTTCTTCCGGTCCTTGTATTGGAGACTGGGAACACTCTCTCTCTCTCCCTCTCTTTAAGGGGAAAAAGGAGAACCCATCATCATTTCCATCACTACCCAACTACTTATAACACTCAGCCCCACACTCACATTTCCTATACCCAAATTCTAACCCTCTTTTTCTTCTTCCCCTTCCTTTCAAACCTCCTACAATGCTCCAAATCTCCTTGCTTTGATTTCTACCTCTCTCGTCGATCAACGCTTGGACGCCGCCTGAGCATGGCCTCCTCCGCCTGCTTCAACATCTCCCAACCCATTCCCGTTTTTGCCTTGCTTCTTTTGCTTCTTCTTACTTCCACAATAACTCCGCTGCACTCCTCGCCAACCCAAACCCACGCCACAAATCAGACCTTCCATCCCCAACAGGAATTAAACAAGCTCAAGATGATAAGGGCTCGCTTGGACAACATCAACAAGCCTGCCCTCCACACAATTCAGGTTACTACTCAATTCCAATTGTATCTACTCTGTTTCTGCACTTCCTCTGTTTCCACAATAAACAAGACCGGGTTTTTCTTAATGCAGAGTCCTGATGGGGACCTCATAGATTGCGTTTTATCTCACCTGCAACCCGCATTTGATCATCCCAAGTTGAAAGGGCAGATACCATTGGTAATCAAATCGCAGTTTACGTTGGTTGCACCCGAATTCAAGGGGAATCTAAGTCTAAGCTCTTGTCTGGATTTGCAGGATCCGCCAGAGAGACCAGAAGGGCATAAGCCGCCTAGGACGGTGACAGAGAGCTTCCAATTATGGAGCATGAATGGAGAAAATTGCCCAGAGGGAACCGTCCCAATAAGAAGAACAACTGAGGAAGACATGTTAAGAGCTACCTCTTTTCAGATGTTTGGAAGGAAAGTAAGAAGATGGGTTAGGAGAGAAACAAGCAGCGACGGGCATGAGGTACGATTTCCAACAAAAGTAACAGAATACATGCGGATTGCTTTAGCTTGAAGGTGACCATTCACTCTCTCATGCCTTTTTTTTTTTTTTTCCTTTTACAACCAGCACGCTGTGGGATACGTGACCGGCGATCACTACTTCGGGGCGAAAGCAAGCATCAATGTGTGGGCACCACGAGTCGCCGATCAGTATGAATTCAGCTTATCGCAAATGTGGGTCATCTCCGGCTCCTTCGGCGACGATCTCAACACCATTGAAGCTGGTTGGCAGGTATGTCTTTCCCTATGTTACAAAAACCTCGTCTTTTATCCTTGTCNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCAAAAGATGTAGGCCGACAAAGAATTTGACTAAAGTGAATTTCAAAAGAGACCATTTTATTTGCTTTTTCCATTTAAAGGATGGATGCCAATGCTTTTGAAATTTGGATCCACAGGTTAGTCCAGAACTGTATGGAGACAATTACCCAAGATTTTTTACTTACTGGACCGTGAGTAACCCATCAACAAAACGCTCTCTGCTTTCTTCCATCCCTTACCTGCGTAACAAAATATGGGCTGATATTGAGATGAATTTTATGACAGTCGGATGCATACCAAGCAACCGGGTGTTACAATTTGCTATGCTCGGGGTTTGTCCAGACAAACAACAAAATTGCAATTGGGGCTGCAATTTCTCCAACGTCTTCGTTTGACGGCGGTCAATTCGACATCAGCTTGTTGGTCTGGAAGGTGCAGCATTTGAATCCGCTTCTATCTCAACTTTTTCTTCGGACTTCTTAATAAATAAATAAATAAATAAATAAATAAATGGGTGTAGGATCCGAAGCATGGAAATTGGTGGCTGGAATTCGGGTCGGGAGTTTTGGTGGGGTACTGGCCGTCCTTCCTCTTCACCCATTTACAGGACCATGCAACAATGGTGCAATTCGGGGGAGAGGTGGTGAATTCAAGTCCGTCGGGATTCCACACCACTACAGAGATGGGGAGTGGGCATTTCGCCGGCGAGGGATTCGGAAAAGCCTCCTACTTTCGGAACCTGCAGGTGGTGGATTGGGACAACAGCTTGGTTCCATTATCCAACTTGGTGGTTTTGGCGGACCATCCCAACTGCTACGACATTCAAGGTGGGATCAACACCGTTTGGGGAAACTACTTTTACTACGGTGGACCGGGTCGAAACGGCCGATGCCCTTGACACTACACAGGGCCAAAAGGGTAAATATACTTTTATTTTTTTCTATTTTCTCTCTAAATTATTCAAATTTATTCGTGGGGGGTGATATACCGATTACCGATAAAGGGGTGTTGAATGTTTTTGGAAAATAGTCCTCTAATTTGGCGCCATTTTTTNTTTCTTTTTTTTCTAGGCTTTTATATTCATTCATTTCTTTTACAAAATT

mRNA sequence

GGAGAAGAACCCACCGCCCCTCCAAACAATTCATATTCGTATATTCTCATATATTCATATATTCATATATTCATATATTCATATTGTTGCCCCCTTTAATCTCAAAAGCTAAAGTTTCTTCCGGTCCTTGTATTGGAGACTGGGAACACTCTCTCTCTCTCCCTCTCTTTAAGGGGAAAAAGGAGAACCCATCATCATTTCCATCACTACCCAACTACTTATAACACTCAGCCCCACACTCACATTTCCTATACCCAAATTCTAACCCTCTTTTTCTTCTTCCCCTTCCTTTCAAACCTCCTACAATGCTCCAAATCTCCTTGCTTTGATTTCTACCTCTCTCGTCGATCAACGCTTGGACGCCGCCTGAGCATGGCCTCCTCCGCCTGCTTCAACATCTCCCAACCCATTCCCGTTTTTGCCTTGCTTCTTTTGCTTCTTCTTACTTCCACAATAACTCCGCTGCACTCCTCGCCAACCCAAACCCACGCCACAAATCAGACCTTCCATCCCCAACAGGAATTAAACAAGCTCAAGATGATAAGGGCTCGCTTGGACAACATCAACAAGCCTGCCCTCCACACAATTCAGGCTTTTATATTCATTCATTTCTTTTACAAAATT

Coding sequence (CDS)

ATGGCCTCCTCCGCCTGCTTCAACATCTCCCAACCCATTCCCGTTTTTGCCTTGCTTCTTTTGCTTCTTCTTACTTCCACAATAACTCCGCTGCACTCCTCGCCAACCCAAACCCACGCCACAAATCAGACCTTCCATCCCCAACAGGAATTAAACAAGCTCAAGATGATAAGGGCTCGCTTGGACAACATCAACAAGCCTGCCCTCCACACAATTCAGGCTTTTATATTCATTCATTTCTTTTACAAAATT

Protein sequence

MASSACFNISQPIPVFALLLLLLLTSTITPLHSSPTQTHATNQTFHPQQELNKLKMIRARLDNINKPALHTIQAFIFIHFFYKI
Homology
[Close]
BLAST of Cp4.1LG11g00890 vs. NCBI nr
Match: XP_023546698.1 (uncharacterized protein LOC111805725 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 142 bits (359), Expect = 1.33e-38
Identity = 73/74 (98.65%), Postives = 74/74 (100.00%), Query Frame = 0 

Query: 1  MASSACFNISQPIPVFALLLLLLLTSTITPLHSSPTQTHATNQTFHPQQELNKLKMIRAR 60
          MASSACFNISQPIPVFALLLLLLLTSTITPLHSSPTQTHATNQTFHPQQELNKLKMIRAR
Sbjct: 1  MASSACFNISQPIPVFALLLLLLLTSTITPLHSSPTQTHATNQTFHPQQELNKLKMIRAR 60

Query: 61 LDNINKPALHTIQA 74
          LDNINKPALHTIQ+
Sbjct: 61 LDNINKPALHTIQS 74

[Close]
BLAST of Cp4.1LG11g00890 vs. NCBI nr
Match: XP_022961843.1 (uncharacterized protein LOC111462488 [Cucurbita moschata])

HSP 1 Score: 142 bits (358), Expect = 1.86e-38
Identity = 72/74 (97.30%), Postives = 74/74 (100.00%), Query Frame = 0 

Query: 1  MASSACFNISQPIPVFALLLLLLLTSTITPLHSSPTQTHATNQTFHPQQELNKLKMIRAR 60
          MASSACFNISQPIP+FALLLLLLLTSTITPLHSSPTQTHATNQTFHPQQELNKLKMIRAR
Sbjct: 1  MASSACFNISQPIPIFALLLLLLLTSTITPLHSSPTQTHATNQTFHPQQELNKLKMIRAR 60

Query: 61 LDNINKPALHTIQA 74
          LDNINKPALHTIQ+
Sbjct: 61 LDNINKPALHTIQS 74

[Close]
BLAST of Cp4.1LG11g00890 vs. NCBI nr
Match: XP_022996673.1 (uncharacterized protein LOC111491848 [Cucurbita maxima])

HSP 1 Score: 137 bits (345), Expect = 1.50e-36
Identity = 70/74 (94.59%), Postives = 73/74 (98.65%), Query Frame = 0 

Query: 1  MASSACFNISQPIPVFALLLLLLLTSTITPLHSSPTQTHATNQTFHPQQELNKLKMIRAR 60
          MASSACFNISQPIP+FALLLLLLLTSTITPLHSSPT+THATNQTFHPQQELNKLKMIRAR
Sbjct: 1  MASSACFNISQPIPIFALLLLLLLTSTITPLHSSPTRTHATNQTFHPQQELNKLKMIRAR 60

Query: 61 LDNINKPALHTIQA 74
          LD INKPALHTIQ+
Sbjct: 61 LDIINKPALHTIQS 74

[Close]
BLAST of Cp4.1LG11g00890 vs. NCBI nr
Match: KAG6598235.1 (hypothetical protein SDJN03_08013, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 137 bits (344), Expect = 3.30e-36
Identity = 69/74 (93.24%), Postives = 71/74 (95.95%), Query Frame = 0 

Query: 1  MASSACFNISQPIPVFALLLLLLLTSTITPLHSSPTQTHATNQTFHPQQELNKLKMIRAR 60
          MASSACFNISQPIP+F LLLLLLLTSTITPLHSSPTQTHATNQTFHPQQELNKL M+RAR
Sbjct: 1  MASSACFNISQPIPIFPLLLLLLLTSTITPLHSSPTQTHATNQTFHPQQELNKLNMMRAR 60

Query: 61 LDNINKPALHTIQA 74
          LDNINKPALHTIQ 
Sbjct: 61 LDNINKPALHTIQV 74

[Close]
BLAST of Cp4.1LG11g00890 vs. NCBI nr
Match: XP_038885684.1 (uncharacterized protein LOC120075988 [Benincasa hispida])

HSP 1 Score: 93.6 bits (231), Expect = 4.47e-20
Identity = 53/76 (69.74%), Postives = 60/76 (78.95%), Query Frame = 0 

Query: 1   MASSACF-NISQPIPVFALLLLLLLTSTITPLHSSPTQTHATNQT-FHPQQELNKLKMIR 60
           MAS+ CF NISQ I +F LL  LL  STITP+HS+P   HATNQT FHPQ+ELNKL MIR
Sbjct: 33  MASALCFINISQTILIFVLLFSLLFVSTITPVHSTPN--HATNQTDFHPQEELNKLNMIR 92

Query: 61  ARLDNINKPALHTIQA 74
           A LD INKPA+HTIQ+
Sbjct: 93  AHLDKINKPAIHTIQS 106

[Close]
BLAST of Cp4.1LG11g00890 vs. ExPASy TrEMBL
Match: A0A6J1HCZ9 (uncharacterized protein LOC111462488 OS=Cucurbita moschata OX=3662 GN=LOC111462488 PE=4 SV=1)

HSP 1 Score: 142 bits (358), Expect = 9.02e-39
Identity = 72/74 (97.30%), Postives = 74/74 (100.00%), Query Frame = 0 

Query: 1  MASSACFNISQPIPVFALLLLLLLTSTITPLHSSPTQTHATNQTFHPQQELNKLKMIRAR 60
          MASSACFNISQPIP+FALLLLLLLTSTITPLHSSPTQTHATNQTFHPQQELNKLKMIRAR
Sbjct: 1  MASSACFNISQPIPIFALLLLLLLTSTITPLHSSPTQTHATNQTFHPQQELNKLKMIRAR 60

Query: 61 LDNINKPALHTIQA 74
          LDNINKPALHTIQ+
Sbjct: 61 LDNINKPALHTIQS 74

[Close]
BLAST of Cp4.1LG11g00890 vs. ExPASy TrEMBL
Match: A0A6J1KBP1 (uncharacterized protein LOC111491848 OS=Cucurbita maxima OX=3661 GN=LOC111491848 PE=4 SV=1)

HSP 1 Score: 137 bits (345), Expect = 7.27e-37
Identity = 70/74 (94.59%), Postives = 73/74 (98.65%), Query Frame = 0 

Query: 1  MASSACFNISQPIPVFALLLLLLLTSTITPLHSSPTQTHATNQTFHPQQELNKLKMIRAR 60
          MASSACFNISQPIP+FALLLLLLLTSTITPLHSSPT+THATNQTFHPQQELNKLKMIRAR
Sbjct: 1  MASSACFNISQPIPIFALLLLLLLTSTITPLHSSPTRTHATNQTFHPQQELNKLKMIRAR 60

Query: 61 LDNINKPALHTIQA 74
          LD INKPALHTIQ+
Sbjct: 61 LDIINKPALHTIQS 74

[Close]
BLAST of Cp4.1LG11g00890 vs. ExPASy TrEMBL
Match: A0A6J1GHT7 (uncharacterized protein LOC111454297 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111454297 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.19e-18
Identity = 49/74 (66.22%), Postives = 57/74 (77.03%), Query Frame = 0 

Query: 1  MASSACFNISQPIPVFALLLLLLLTSTITPLHSSPTQTHATNQTFHPQQELNKLKMIRAR 60
          MAS+  FN  Q I +   LLLLLL+ TITP++SS     ATNQTFHPQQELNKLKMIRA 
Sbjct: 1  MASACFFNTPQTIAILVPLLLLLLSFTITPVYSS--HIPATNQTFHPQQELNKLKMIRAH 60

Query: 61 LDNINKPALHTIQA 74
          LD +NKPA+HTIQ+
Sbjct: 61 LDKVNKPAVHTIQS 72

[Close]
BLAST of Cp4.1LG11g00890 vs. ExPASy TrEMBL
Match: A0A6J1GHR2 (uncharacterized protein LOC111454297 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111454297 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.37e-18
Identity = 49/74 (66.22%), Postives = 57/74 (77.03%), Query Frame = 0 

Query: 1  MASSACFNISQPIPVFALLLLLLLTSTITPLHSSPTQTHATNQTFHPQQELNKLKMIRAR 60
          MAS+  FN  Q I +   LLLLLL+ TITP++SS     ATNQTFHPQQELNKLKMIRA 
Sbjct: 1  MASACFFNTPQTIAILVPLLLLLLSFTITPVYSS--HIPATNQTFHPQQELNKLKMIRAH 60

Query: 61 LDNINKPALHTIQA 74
          LD +NKPA+HTIQ+
Sbjct: 61 LDKVNKPAVHTIQS 72

[Close]
BLAST of Cp4.1LG11g00890 vs. ExPASy TrEMBL
Match: A0A6J1KKE5 (uncharacterized protein LOC111496524 OS=Cucurbita maxima OX=3661 GN=LOC111496524 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.55e-17
Identity = 47/74 (63.51%), Postives = 55/74 (74.32%), Query Frame = 0 

Query: 1  MASSACFNISQPIPVFALLLLLLLTSTITPLHSSPTQTHATNQTFHPQQELNKLKMIRAR 60
          MA +  FN  Q I +   LLLLLL  TITP++  P+   ATNQTFHPQQELNKLKMIRA 
Sbjct: 1  MAFACFFNTPQTIAILVPLLLLLLAFTITPVY--PSHIPATNQTFHPQQELNKLKMIRAH 60

Query: 61 LDNINKPALHTIQA 74
          LD +NKPA+HTIQ+
Sbjct: 61 LDKVNKPAVHTIQS 72

[Close]
BLAST of Cp4.1LG11g00890 vs. TAIR 10
Match: AT1G70550.2 (Protein of Unknown Function (DUF239) )

HSP 1 Score: 50.1 bits (118), Expect = 1.0e-06
Identity = 28/57 (49.12%), Postives = 38/57 (66.67%), Query Frame = 0 

Query: 18 LLLLLLLTSTITPLHSSPTQTHATNQTFHPQQELNKLKMIRARLDNINKPALHTIQA 75
          L+LLL L S+     +S + + A +QT  PQ+EL KL +IR  LD INKPA+ TIQ+
Sbjct: 9  LILLLCLVSSSFSSTTSSSNSTAADQTLRPQEELQKLTLIRQELDKINKPAVKTIQS 65

[Close]
BLAST of Cp4.1LG11g00890 vs. TAIR 10
Match: AT1G70550.1 (Protein of Unknown Function (DUF239) )

HSP 1 Score: 50.1 bits (118), Expect = 1.0e-06
Identity = 28/57 (49.12%), Postives = 38/57 (66.67%), Query Frame = 0 

Query: 18  LLLLLLLTSTITPLHSSPTQTHATNQTFHPQQELNKLKMIRARLDNINKPALHTIQA 75
           L+LLL L S+     +S + + A +QT  PQ+EL KL +IR  LD INKPA+ TIQ+
Sbjct: 64  LILLLCLVSSSFSSTTSSSNSTAADQTLRPQEELQKLTLIRQELDKINKPAVKTIQS 120

[Close]
BLAST of Cp4.1LG11g00890 vs. TAIR 10
Match: AT1G23340.1 (Protein of Unknown Function (DUF239) )

HSP 1 Score: 42.0 bits (97), Expect = 2.8e-04
Identity = 23/59 (38.98%), Postives = 37/59 (62.71%), Query Frame = 0 

Query: 16 FALLLLLLLTSTITPLHSSPTQTHATNQTFHPQQELNKLKMIRARLDNINKPALHTIQA 75
          F  +LLL L S+    ++SP+ + +      PQ+E+ K+K+IR +L  INKPA+ TI +
Sbjct: 10 FTFILLLSLFSS----YASPSNSTSETVPLRPQREIQKMKLIRKQLQKINKPAIKTIHS 64

[Close]
BLAST of Cp4.1LG11g00890 vs. TAIR 10
Match: AT1G23340.2 (Protein of Unknown Function (DUF239) )

HSP 1 Score: 42.0 bits (97), Expect = 2.8e-04
Identity = 23/59 (38.98%), Postives = 37/59 (62.71%), Query Frame = 0 

Query: 16 FALLLLLLLTSTITPLHSSPTQTHATNQTFHPQQELNKLKMIRARLDNINKPALHTIQA 75
          F  +LLL L S+    ++SP+ + +      PQ+E+ K+K+IR +L  INKPA+ TI +
Sbjct: 10 FTFILLLSLFSS----YASPSNSTSETVPLRPQREIQKMKLIRKQLQKINKPAIKTIHS 64

The following BLAST results are available for this feature:
BLAST of Cp4.1LG11g00890 vs.
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG11g00890 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023546698.11.33e-3898.65uncharacterized protein LOC111805725 [Cucurbita pepo subsp. pepo][more]
XP_022961843.11.86e-3897.30uncharacterized protein LOC111462488 [Cucurbita moschata][more]
XP_022996673.11.50e-3694.59uncharacterized protein LOC111491848 [Cucurbita maxima][more]
KAG6598235.13.30e-3693.24hypothetical protein SDJN03_08013, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_038885684.14.47e-2069.74uncharacterized protein LOC120075988 [Benincasa hispida][more]
BLAST of Cp4.1LG11g00890 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1HCZ99.02e-3997.30uncharacterized protein LOC111462488 OS=Cucurbita moschata OX=3662 GN=LOC1114624... [more]
A0A6J1KBP17.27e-3794.59uncharacterized protein LOC111491848 OS=Cucurbita maxima OX=3661 GN=LOC111491848... [more]
A0A6J1GHT71.19e-1866.22uncharacterized protein LOC111454297 isoform X2 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1GHR21.37e-1866.22uncharacterized protein LOC111454297 isoform X1 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1KKE51.55e-1763.51uncharacterized protein LOC111496524 OS=Cucurbita maxima OX=3661 GN=LOC111496524... [more]
BLAST of Cp4.1LG11g00890 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G70550.21.0e-0649.12Protein of Unknown Function (DUF239) [more]
AT1G70550.11.0e-0649.12Protein of Unknown Function (DUF239) [more]
AT1G23340.12.8e-0438.98Protein of Unknown Function (DUF239) [more]
AT1G23340.22.8e-0438.98Protein of Unknown Function (DUF239) [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG11g00890.1Cp4.1LG11g00890.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane