Cp4.1LG11g00860 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG11g00860
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	DNA-directed RNA polymerase subunit 10-like protein
Location	Cp4.1LG11: 96750 .. 98052 (+)
RNA-Seq Expression	Cp4.1LG11g00860
Synteny	Cp4.1LG11g00860

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTCACATACAATTTTGTCTCTTCTGGGCCCAACTAAACTTTCATATTTTGGGCCTTCACGGGAAATGCCCATTTCTAAATGGGCTTATAGATCAAAGCCCAACAAAAGAGGATATAAATTAGCAATCCCTACCGATGTGGACAATGCGAAGCTAAACCCTTTCAAGCCCTAGAAACTACAATCTTTCCCTCCGAGGGCTGACCAGAAGGCGAAGATGATCATCCCAGTTCGTTGCTTCACCTGCGGAAAGGTAAGCCATGGACAACTATATTCAAATTTTAATTTAACCATCTTCTCAGAATTGCGTATTCATGTTTCCTTTATCGTTGAATGTGCGACTGTTTTTGGTTTGCTGCATACGAGATCACAAAGTTTTCAATTTAGTATCGACTCTTTCTGTGACGCAGTTTTTAATTTTTTTTCAGGTGATTGGAAACAAATGGGATCATTACCTTGATCTTCTGCAGGCAGACTATTCAGAAGGGTAAGGAAGTAACACGTTCGTTCTTCTCCTTCTTTTCCCCTTTCATATTTCTTGTCATCACACGTGTTTGGTTTTTAAATTTATCTCTTCATTTTTTAACGTTGCTTGCTAGTGGACGAAAGTATACCCTTCTGGGGATGCTAATGCTTTTCTTTTTCCTGTATTAGGGATGCGCTTGATGCCCTGGGCTTGGTTCGCTACTGCTGTAGGCGAATGCTCATGACTCATGTTGACCTTATTGAGAAGCTTCTTAATTACAATAGTAATCCCTCTTTCTTTTCTCTATGTTCGTGCACGAGTTGTTAAATTTGTAATGTACAATCTTTTGCCTACTTTATTATTCGCCGCCCTTTTACACTTGAATTGCTGTTGTTTTCAGCTTTGGACAAGTCTGATCCCAGTTAGGCGGGGGACAAGTTTGCTGCTTATTCAGTCCAGCAGTGATTCATGTTTTTACGGTGTTCGCGTCCAGTTAAGAGAGAGAAGAACTATGGAAAGAATCATTACAGGACCAGAGTGCAGCTAATGTCTAGGAGTTCAGTTATTTAATCTTCTATTCTATGTGTTTATTAGTTTTTAGGAGTTATTTATCAGTTCGTTAGAAAAACGGATCTTGTCAGTTGAGCTGAGAAGAATCTGTTCTCTTAACTGGCTTTGTGTAATGCTGTCTATATCTGCATTATTGCATCTACAATCCTATTAATACAACTATCAGCTGTTTTTGCTACGCCATTTGTTCTAAATGCTTATAGTTTTTGGTTTCTCAATGTCGATTAGCTGATGAGGCATAAAAGATGGTTTGTTATCTTCCCACGTGC

mRNA sequence

CTTCACATACAATTTTGTCTCTTCTGGGCCCAACTAAACTTTCATATTTTGGGCCTTCACGGGAAATGCCCATTTCTAAATGGGCTTATAGATCAAAGCCCAACAAAAGAGGATATAAATTAGCAATCCCTACCGATGTGGACAATGCGAAGCTAAACCCTTTCAAGCCCTAGAAACTACAATCTTTCCCTCCGAGGGCTGACCAGAAGGCGAAGATGATCATCCCAGTTCGTTGCTTCACCTGCGGAAAGGTGATTGGAAACAAATGGGATCATTACCTTGATCTTCTGCAGGCAGACTATTCAGAAGGGGATGCGCTTGATGCCCTGGGCTTGGTTCGCTACTGCTGTAGGCGAATGCTCATGACTCATGTTGACCTTATTGAGAAGCTTCTTAATTACAATAGTAATCCCTCTTTCTTTTCTCTATCTTTGGACAAGTCTGATCCCAGTTAGGCGGGGGACAAGTTTGCTGCTTATTCAGTCCAGCAGTGATTCATGTTTTTACGGTGTTCGCGTCCAGTTAAGAGAGAGAAGAACTATGGAAAGAATCATTACAGGACCAGAGTGCAGCTAATGTCTAGGAGTTCAGTTATTTAATCTTCTATTCTATGTGTTTATTAGTTTTTAGGAGTTATTTATCAGTTCGTTAGAAAAACGGATCTTGTCAGTTGAGCTGAGAAGAATCTGTTCTCTTAACTGGCTTTGTGTAATGCTGTCTATATCTGCATTATTGCATCTACAATCCTATTAATACAACTATCAGCTGTTTTTGCTACGCCATTTGTTCTAAATGCTTATAGTTTTTGGTTTCTCAATGTCGATTAGCTGATGAGGCATAAAAGATGGTTTGTTATCTTCCCACGTGC

Coding sequence (CDS)

ATGATCATCCCAGTTCGTTGCTTCACCTGCGGAAAGGTGATTGGAAACAAATGGGATCATTACCTTGATCTTCTGCAGGCAGACTATTCAGAAGGGGATGCGCTTGATGCCCTGGGCTTGGTTCGCTACTGCTGTAGGCGAATGCTCATGACTCATGTTGACCTTATTGAGAAGCTTCTTAATTACAATAGTAATCCCTCTTTCTTTTCTCTATCTTTGGACAAGTCTGATCCCAGTTAG

Protein sequence

MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNSNPSFFSLSLDKSDPS

Homology

[Close]

BLAST of Cp4.1LG11g00860 vs. ExPASy Swiss-Prot
Match: Q9SYA6 (DNA-directed RNA polymerase subunit 10-like protein OS=Arabidopsis thaliana OX=3702 GN=NRPB10L PE=1 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 1.5e-31
Identity = 63/79 (79.75%), Postives = 70/79 (88.61%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
          MI+PVRCFTCGKVIGNKWD YL+LLQADY+EGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIVPVRCFTCGKVIGNKWDTYLELLQADYAEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYNSNPSFFSLSLDKSDPS 80
          NYN        +++KSDP+
Sbjct: 61 NYN--------TMEKSDPN 71

[Close]

BLAST of Cp4.1LG11g00860 vs. ExPASy Swiss-Prot
Match: Q8LFJ6 (DNA-directed RNA polymerases II, IV and V subunit 10 OS=Arabidopsis thaliana OX=3702 GN=NRPB10 PE=1 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 2.1e-30
Identity = 64/79 (81.01%), Postives = 67/79 (84.81%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGKVIGNKWD YLDLLQ DY+EGDALDAL LVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDQYLDLLQLDYTEGDALDALQLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYNSNPSFFSLSLDKSDPS 80
          NYN        +L+KSD S
Sbjct: 61 NYN--------TLEKSDNS 71

[Close]

BLAST of Cp4.1LG11g00860 vs. ExPASy Swiss-Prot
Match: Q39290 (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Brassica napus OX=3708 PE=3 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 2.1e-30
Identity = 64/79 (81.01%), Postives = 67/79 (84.81%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGKVIGNKWD YLDLLQ DY+EGDALDAL LVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYNSNPSFFSLSLDKSDPS 80
          NYN        +L+KSD S
Sbjct: 61 NYN--------TLEKSDNS 71

[Close]

BLAST of Cp4.1LG11g00860 vs. ExPASy Swiss-Prot
Match: Q55AB6 (DNA-directed RNA polymerases I, II, and III subunit rpabc5 OS=Dictyostelium discoideum OX=44689 GN=polr2l PE=3 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 2.8e-27
Identity = 55/62 (88.71%), Postives = 57/62 (91.94%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGKVIGNKWD YL LLQ DY+EGDALDAL L RYCCRRML+THVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDAYLSLLQIDYTEGDALDALCLKRYCCRRMLLTHVDLIEKLL 60

Query: 61 NY 63
          NY
Sbjct: 61 NY 62

[Close]

BLAST of Cp4.1LG11g00860 vs. ExPASy Swiss-Prot
Match: Q32P78 (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Bos taurus OX=9913 GN=POLR2L PE=1 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 4.8e-27
Identity = 52/62 (83.87%), Postives = 58/62 (93.55%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGK++GNKW+ YL LLQA+Y+EGDALDALGL RYCCRRML+ HVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLAHVDLIEKLL 60

Query: 61 NY 63
          NY
Sbjct: 61 NY 62

[Close]

BLAST of Cp4.1LG11g00860 vs. NCBI nr
Match: KAA0057130.1 (DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Cucumis melo var. makuwa] >TYJ97111.1 DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Cucumis melo var. makuwa])

HSP 1 Score: 149 bits (376), Expect = 5.24e-45
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYNSNPS 67
          NYNSNPS
Sbjct: 61 NYNSNPS 67

[Close]

BLAST of Cp4.1LG11g00860 vs. NCBI nr
Match: XP_022961651.1 (DNA-directed RNA polymerase subunit 10-like protein [Cucurbita moschata] >XP_022997628.1 DNA-directed RNA polymerase subunit 10-like protein [Cucurbita maxima] >XP_023545653.1 DNA-directed RNA polymerase subunit 10-like protein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 147 bits (371), Expect = 2.02e-44
Identity = 70/79 (88.61%), Postives = 71/79 (89.87%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYNSNPSFFSLSLDKSDPS 79
          NYN+        LDKSDPS
Sbjct: 61 NYNT--------LDKSDPS 71

[Close]

BLAST of Cp4.1LG11g00860 vs. NCBI nr
Match: XP_027914743.1 (DNA-directed RNA polymerase subunit 10-like protein [Vigna unguiculata])

HSP 1 Score: 145 bits (365), Expect = 1.67e-43
Identity = 70/79 (88.61%), Postives = 70/79 (88.61%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGKVIGNKWD YLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDSYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYNSNPSFFSLSLDKSDPS 79
          NYNS        LDKSDPS
Sbjct: 61 NYNS--------LDKSDPS 71

[Close]

BLAST of Cp4.1LG11g00860 vs. NCBI nr
Match: XP_014520390.1 (DNA-directed RNA polymerase subunit 10-like protein [Vigna radiata var. radiata] >XP_017426950.1 PREDICTED: DNA-directed RNA polymerase subunit 10-like protein [Vigna angularis] >KOM45699.1 hypothetical protein LR48_Vigan06g100500 [Vigna angularis] >BAT99521.1 hypothetical protein VIGAN_10097000 [Vigna angularis var. angularis])

HSP 1 Score: 144 bits (364), Expect = 2.37e-43
Identity = 70/79 (88.61%), Postives = 70/79 (88.61%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGKVIGNKWD YLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDTYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYNSNPSFFSLSLDKSDPS 79
          NYNS        LDKSDPS
Sbjct: 61 NYNS--------LDKSDPS 71

[Close]

BLAST of Cp4.1LG11g00860 vs. NCBI nr
Match: XP_004138685.1 (DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Cucumis sativus] >XP_008456558.1 PREDICTED: DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Cucumis melo] >XP_022132211.1 DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Momordica charantia] >XP_022951011.1 DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Cucurbita moschata] >XP_023002779.1 DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Cucurbita maxima] >XP_038884312.1 DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Benincasa hispida] >XP_038885728.1 DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Benincasa hispida] >KAG6585165.1 DNA-directed RNA polymerase subunit 10-like protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7020085.1 DNA-directed RNA polymerase subunit 10-like protein [Cucurbita argyrosperma subsp. argyrosperma] >KGN63029.1 hypothetical protein Csa_022113 [Cucumis sativus])

HSP 1 Score: 144 bits (363), Expect = 3.36e-43
Identity = 69/79 (87.34%), Postives = 70/79 (88.61%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYNSNPSFFSLSLDKSDPS 79
          NYN+        LDKSD S
Sbjct: 61 NYNT--------LDKSDTS 71

[Close]

BLAST of Cp4.1LG11g00860 vs. ExPASy TrEMBL
Match: A0A5A7UPU3 (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold371G00170 PE=3 SV=1)

HSP 1 Score: 149 bits (376), Expect = 2.54e-45
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYNSNPS 67
          NYNSNPS
Sbjct: 61 NYNSNPS 67

[Close]

BLAST of Cp4.1LG11g00860 vs. ExPASy TrEMBL
Match: A0A6J1KEH3 (DNA-directed RNA polymerase subunit 10-like protein OS=Cucurbita maxima OX=3661 GN=LOC111492503 PE=3 SV=1)

HSP 1 Score: 147 bits (371), Expect = 9.79e-45
Identity = 70/79 (88.61%), Postives = 71/79 (89.87%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYNSNPSFFSLSLDKSDPS 79
          NYN+        LDKSDPS
Sbjct: 61 NYNT--------LDKSDPS 71

[Close]

BLAST of Cp4.1LG11g00860 vs. ExPASy TrEMBL
Match: A0A6J1HAY4 (DNA-directed RNA polymerase subunit 10-like protein OS=Cucurbita moschata OX=3662 GN=LOC111462358 PE=3 SV=1)

HSP 1 Score: 147 bits (371), Expect = 9.79e-45
Identity = 70/79 (88.61%), Postives = 71/79 (89.87%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYNSNPSFFSLSLDKSDPS 79
          NYN+        LDKSDPS
Sbjct: 61 NYNT--------LDKSDPS 71

[Close]

BLAST of Cp4.1LG11g00860 vs. ExPASy TrEMBL
Match: A0A1S3VQ31 (DNA-directed RNA polymerase subunit 10-like protein OS=Vigna radiata var. radiata OX=3916 GN=LOC106777329 PE=3 SV=1)

HSP 1 Score: 144 bits (364), Expect = 1.15e-43
Identity = 70/79 (88.61%), Postives = 70/79 (88.61%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGKVIGNKWD YLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDTYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYNSNPSFFSLSLDKSDPS 79
          NYNS        LDKSDPS
Sbjct: 61 NYNS--------LDKSDPS 71

[Close]

BLAST of Cp4.1LG11g00860 vs. ExPASy TrEMBL
Match: A0A0L9UT24 (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan06g100500 PE=3 SV=1)

HSP 1 Score: 144 bits (364), Expect = 1.15e-43
Identity = 70/79 (88.61%), Postives = 70/79 (88.61%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGKVIGNKWD YLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDTYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYNSNPSFFSLSLDKSDPS 79
          NYNS        LDKSDPS
Sbjct: 61 NYNS--------LDKSDPS 71

[Close]

BLAST of Cp4.1LG11g00860 vs. TAIR 10
Match: AT1G61700.1 (RNA polymerases N / 8 kDa subunit )

HSP 1 Score: 136.3 bits (342), Expect = 1.0e-32
Identity = 63/79 (79.75%), Postives = 70/79 (88.61%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
          MI+PVRCFTCGKVIGNKWD YL+LLQADY+EGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIVPVRCFTCGKVIGNKWDTYLELLQADYAEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYNSNPSFFSLSLDKSDPS 80
          NYN        +++KSDP+
Sbjct: 61 NYN--------TMEKSDPN 71

[Close]

BLAST of Cp4.1LG11g00860 vs. TAIR 10
Match: AT1G11475.1 (RNA polymerases N / 8 kDa subunit )

HSP 1 Score: 132.5 bits (332), Expect = 1.5e-31
Identity = 64/79 (81.01%), Postives = 67/79 (84.81%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGKVIGNKWD YLDLLQ DY+EGDALDAL LVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDQYLDLLQLDYTEGDALDALQLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYNSNPSFFSLSLDKSDPS 80
          NYN        +L+KSD S
Sbjct: 61 NYN--------TLEKSDNS 71

The following BLAST results are available for this feature:

BLAST of Cp4.1LG11g00860 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SYA6	1.5e-31	79.75	DNA-directed RNA polymerase subunit 10-like protein OS=Arabidopsis thaliana OX=3...	[more]
Q8LFJ6	2.1e-30	81.01	DNA-directed RNA polymerases II, IV and V subunit 10 OS=Arabidopsis thaliana OX=...	[more]
Q39290	2.1e-30	81.01	DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Brassica napus OX=...	[more]
Q55AB6	2.8e-27	88.71	DNA-directed RNA polymerases I, II, and III subunit rpabc5 OS=Dictyostelium disc...	[more]
Q32P78	4.8e-27	83.87	DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Bos taurus OX=9913...	[more]

BLAST of Cp4.1LG11g00860 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0057130.1	5.24e-45	100.00	DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Cucumis melo var. ma...	[more]
XP_022961651.1	2.02e-44	88.61	DNA-directed RNA polymerase subunit 10-like protein [Cucurbita moschata] >XP_022...	[more]
XP_027914743.1	1.67e-43	88.61	DNA-directed RNA polymerase subunit 10-like protein [Vigna unguiculata]	[more]
XP_014520390.1	2.37e-43	88.61	DNA-directed RNA polymerase subunit 10-like protein [Vigna radiata var. radiata]...	[more]
XP_004138685.1	3.36e-43	87.34	DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Cucumis sativus] >XP...	[more]

BLAST of Cp4.1LG11g00860 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UPU3	2.54e-45	100.00	DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Cucumis melo var. ...	[more]
A0A6J1KEH3	9.79e-45	88.61	DNA-directed RNA polymerase subunit 10-like protein OS=Cucurbita maxima OX=3661 ...	[more]
A0A6J1HAY4	9.79e-45	88.61	DNA-directed RNA polymerase subunit 10-like protein OS=Cucurbita moschata OX=366...	[more]
A0A1S3VQ31	1.15e-43	88.61	DNA-directed RNA polymerase subunit 10-like protein OS=Vigna radiata var. radiat...	[more]
A0A0L9UT24	1.15e-43	88.61	Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan06g100500 PE...	[more]

BLAST of Cp4.1LG11g00860 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G61700.1	1.0e-32	79.75	RNA polymerases N / 8 kDa subunit	[more]
AT1G11475.1	1.5e-31	81.01	RNA polymerases N / 8 kDa subunit	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.10.60		coord: 1..65 e-value: 2.0E-39 score: 135.5
None	No IPR available	PANTHER	PTHR23431:SF6	SUBFAMILY NOT NAMED	coord: 1..77
IPR000268	DNA-directed RNA polymerase, subunit N/Rpb10	PIRSF	PIRSF005653	RpoN_RPB10	coord: 1..74 e-value: 5.0E-32 score: 107.7
IPR000268	DNA-directed RNA polymerase, subunit N/Rpb10	PFAM	PF01194	RNA_pol_N	coord: 1..59 e-value: 6.8E-32 score: 109.6
IPR000268	DNA-directed RNA polymerase, subunit N/Rpb10	PANTHER	PTHR23431	DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5 FAMILY MEMBER	coord: 1..77
IPR000268	DNA-directed RNA polymerase, subunit N/Rpb10	HAMAP	MF_00250	RNApol_arch_N	coord: 1..63 score: 19.33688
IPR020789	RNA polymerases, subunit N, zinc binding site	PROSITE	PS01112	RNA_POL_N_8KD	coord: 2..11
IPR023580	RNA polymerase subunit RPB10	SUPERFAMILY	46924	RNA polymerase subunit RPB10	coord: 1..63

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG11g00860.1	Cp4.1LG11g00860.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006360	transcription by RNA polymerase I
biological_process	GO:0006366	transcription by RNA polymerase II
biological_process	GO:0042797	tRNA transcription by RNA polymerase III
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005736	RNA polymerase I complex
cellular_component	GO:0005665	RNA polymerase II, core complex
cellular_component	GO:0005666	RNA polymerase III complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0008270	zinc ion binding