Cp4.1LG10g11790 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG10g11790
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	ras-related protein RABA4d-like
Location	Cp4.1LG10: 8645843 .. 8649724 (+)
RNA-Seq Expression	Cp4.1LG10g11790
Synteny	Cp4.1LG10g11790

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGGCCACAAAACCGTTGGTGATACCCCCACACAATGGCCGTTGTTCTAATTCCACTTCTCGCTCTCTTTTCAATCTCTCTTCTTCCTCCCCTTCATCTTCTTCAATCCCAGCATTCCAACCTCCACTCACTATTCTCTGAAATTCCCTTCAAACCCCACCTCTGAATTCAATTCCCCTCCCAACTATTTTGCCCTAATTTCTCTTCTGGGCCCAATTCCAGGGAGATGATCGATTATTCAGCTTCCCTTCCCTTACTTGTAACGATCGGGAAATGGGCAATTTGGTTGGGGTTATAGTGTTGTTATGCGTATAATCTGCGCGTTTTCGAGGTGGGGTTTGTGGGAATTTGGAGAGGAAGAGAATGTCGAATCTATATGGGGATTTTAACCAGAAGATTGATTATGTTTTCAAAGTTGTGTTGATCGGAGATTCGGCCGTCGGCAAAACCCAACTCCTTGCTCGATTTTCACGGGATGAATTTAGCGTTGATTCCAAAGCTACTATTGGAGTCGAGTTTCAGACTAAAACTCTCGTTATTGATCAGAAAACAGTGAAAGCCCAGATATGGGATACTGCTGGACAAGAACGGTAAGTGCCCCTTGATTTTATTGGGTTTCTTTCTTGTGGAAACTACTTCATTGTTCAATGTTTGGATCTGTAAAATGGATATATGTTCTTGAGCTTTGTGGTAATTGTTAGGTTGAATTAAATGAATGATTGCAGGATGGAAGATAGAGTTAGTGTTGAGGATTGTTGGGAGAGAGTCAACGTTGGCTAATTTAGGGAATGATCATGGGTTTAGAAGTAAGGAATACATCTCCATTGGCACGAGGCTTTTTCGGGAAACCCAAAGCAAAGCCATGAGAGTTTATGCTCAAAATGGACGATATAATACCATTGTGGAAATTCGTGATTCCTAACATGGTATTAGAGTTAGAATCCTCAAATGTTGAGGTGTAGTCACAAGTGACTCAAGTGTTGAACAAAGGGTGTACTTTATTCGAGGACTCCAGAGGAGTCGAGCCTCGATTAAGGAGAGGCTGTTTGAGGGCTTCATAGGCCTCGAGGGAGACTCTATAATGTACTTTGTTCAAAGGGAGGATTGTTGGGAGAGAGTCCCACATTGGCTAATTTAGAGAACGATCTTGGGTTACAAGTAAGGAATACATCTCAATTGGTATGAGACCTTTTGGGGAACCACAAAACAAAGCCACGAGAGCTTATGCTCAAAGTGGACAGTATCATACTATTGTGGAGATCCGTGACTCCTAACAATTAGACCACAACGAGCTCGGAAGCCTCAAATAGAGTTATGACTTGTATGGTTGTTGTTTTCTCTGTATTCCAAAGAGAATGCAGATATCTATTTGTCTACCAAGTCTTAGGAGGATTGGTGAGCTGTTTATATTGTATTTAGCTGTAGCTGTGCTGCAATTTTGTGCTATTTCAGATTGAATGAGACTTTTCTGATAGGATTGATGAGCCATAGGTTCATTTTATGTATGCTCTGAAAAGACATGAGAGGAGTTGCTAGAAGAAAGCTAATGTGCAGGTGAAGGGTGTGTTATTGGGACTCGGGTAGTTTAGAGTAGTGTGGCCATCGTATGGGAATGCATATAAAAGGGGAGAGAGAGGTTAGTATACGTGTGAGATTCCACATTGGTCGGAGAGGGGAACGAAGCATTCTTTGTAAGGGTGTGCCTCTCCCTAGCAGATTTGTTTTAAAAACATTGAGGGGAAGTCTAAAAGGGTAAGGCCAAAGAGGATAATATCTGCTAGTGGTGAGCTTGGGCTATTACAAATGGTATTAGAGCTAGACATTGGGCAATGTGCCAGTGAAGACGCTAAGCCTCAAAGGGGGTGGACACTGGGTGGTGTGCCCGCAAGGACGCTGGCCCCAAAGGGGGTGGATTGTGAGATCCCACGTTAATTGAGAGAGGAACGGGTGTTAGCAAGGACGCTGAGCCCGAAAGGAGGTGGATTGAGAGATCTCACGTCGGTTGGAGAGGGGAACATGAAAAGTAGATTATGGATGACATTAAGTTTCAGCTCATCAGGGACTAGCAGATTATGAAGGGTAGTGGAGACAAGCATAGATGGGACATTACTTCTAAGACTGGGGACATGGTTTTCTTTATCTAGCCTAAAGGCACCAAACAATTTCTTATGTCATTTCTTCTCCATCACTCTTGTAGCAGCGCAAGCCCAAACTCACCGCTAACAAATATTGTCTTCTTCGAACTTTTTCTTACGGGGTTCCAAGATTTTTAAAACGCGTCTGTTAGGGAGAGGTTTTCACACTCTTATAAAGAATGTTTTTGTTCCTCTCTCCAACCGATGTGGGATCTCACAATTCACCCCTTTCGGGGCCCAGCATCCTCGCTGGCACTCGTTCCTCTCTCAAATCGAAGTGGGATCTCACAATCCACCCTCCTTTGGGGCCGAGCGTCCTCGTTGATACACCGTTTGGTGTCCACCCCCCTCGCTGACACACCGTCTAGTGTCCACCTCCCTTCGAGGCCCAACATCCTCGCTGGCATTACCGCCTGATGTCTGGCTCTGATGCCATTTGTAACAGCTCAAACTCACCGCTAGCAGATATTGTCTTCTTTGGGTTTTTCCTTTCGAACTTTCCCTCAAGGTTTTAAAACGCGTCTATTAGGGAGAGATTTCCACACCCTTATAAAGAATGTTTCGTTCCTCTCTTCAACCGATGTGAGATCTCACAATCCACCTCCCTTCGGGGCCTAGCGTCCTCGCTGACACGCCGCCCGGTGTCCACCCCCTCTTTGAGGCTCAGTGTCCTCGCTGGCACACTGCCGGGTGTCTGGTTTTGATACTATTTGTAACAGCCCAAACCCACCGCTAGCAGATATTGTTCTCTTTGGGCTTTCCCTTTCGAACTTTCCCTCAAGGTTTTTAAAACGCATTTGTTAGAGAGAGGTTTCCACACCCTTATAAAGAATGCTTCGTTCCCCTCGATGTGGAATCTCACAGCTCTACTTATAAAAAATCCACTATCAAAATTCCTTAGCTAATTACTAAAGGTACATTTGGTAAGAGATCTGAAAACATGAAACTCGATGAAAAACAGATTTTGATATTTGGAGTTTATGGTATCAACAATTCAGAGTTTTCCTTTAATCCCGAGCTCGATGTCGTTATGTCGTTAAGTCATAAATGTTGCTGTTAAATTGGTTATAGTTCCTGAAGCCATCTCGTTTTTTCGCTTGCCAGGTACAGAGCAGTGACAAGTGCATACTACAGAGGTGCAGTGGGAGCGATGCTGGTTTACGATATGACGAAGCGCCAATCGTTCGATCACATGTCCCGGTGGCTGGAAGAACTAAGAGGACATGCCGATAAGAACATCGTTATAATGCTGATCGGAAACAAATGCGACTTAGGAAGCCTCAGAGCAGTGCCAACAGAAGATGCACAAGAATTTGCAGAAAGAGAGAACCTGTTCTTCATGGAGACATCAGCGCTCGAGTCGACAAACGTCGAGACTGCGTTCTTCACAATTCTAAAAGAGATTTATAGGATTATCAGCAAGAAGAGCCTTGCAGCTGGGGAAGCAATAGATATTAGTGGGAATGCGGCGCTGTTTAGAGGAACTAATATTATTGTTCCTGGACAAGACCAAGATTCTGTGAAAAAAGGTTGTTGTTTTGCTTCGTGAACTTCACATAATTCCATAATCATTTGAGTTGGGACCTTGTTTTTCTATTCCACTTTGATTTGTACTAAGAAAAATGAATTCAATGTCTTACTAATTTGTATATTGACTGGCTTGATGCCCCCATGGATCTCTCTCGCTCTCTCTCTAATTGATTTAGGAATGTTCGAGACGAGTTTGGATTGTCCTTCCCGGCATCGG

mRNA sequence

CAGGCCACAAAACCGTTGGTGATACCCCCACACAATGGCCGTTGTTCTAATTCCACTTCTCGCTCTCTTTTCAATCTCTCTTCTTCCTCCCCTTCATCTTCTTCAATCCCAGCATTCCAACCTCCACTCACTATTCTCTGAAATTCCCTTCAAACCCCACCTCTGAATTCAATTCCCCTCCCAACTATTTTGCCCTAATTTCTCTTCTGGGCCCAATTCCAGGGAGATGATCGATTATTCAGCTTCCCTTCCCTTACTTGTAACGATCGGGAAATGGGCAATTTGGTTGGGGTTATAGTGTTGTTATGCGTATAATCTGCGCGTTTTCGAGGTGGGGTTTGTGGGAATTTGGAGAGGAAGAGAATGTCGAATCTATATGGGGATTTTAACCAGAAGATTGATTATGTTTTCAAAGTTGTGTTGATCGGAGATTCGGCCGTCGGCAAAACCCAACTCCTTGCTCGATTTTCACGGGATGAATTTAGCGTTGATTCCAAAGCTACTATTGGAGTCGAGTTTCAGACTAAAACTCTCGTTATTGATCAGAAAACAGTGAAAGCCCAGATATGGGATACTGCTGGACAAGAACGGTACAGAGCAGTGACAAGTGCATACTACAGAGGTGCAGTGGGAGCGATGCTGGTTTACGATATGACGAAGCGCCAATCGTTCGATCACATGTCCCGGTGGCTGGAAGAACTAAGAGGACATGCCGATAAGAACATCGTTATAATGCTGATCGGAAACAAATGCGACTTAGGAAGCCTCAGAGCAGTGCCAACAGAAGATGCACAAGAATTTGCAGAAAGAGAGAACCTGTTCTTCATGGAGACATCAGCGCTCGAGTCGACAAACGTCGAGACTGCGTTCTTCACAATTCTAAAAGAGATTTATAGGATTATCAGCAAGAAGAGCCTTGCAGCTGGGGAAGCAATAGATATTAGTGGGAATGCGGCGCTGTTTAGAGGAACTAATATTATTGTTCCTGGACAAGACCAAGATTCTGTGAAAAAAGGTTGTTGTTTTGCTTCGTGAACTTCACATAATTCCATAATCATTTGAGTTGGGACCTTGTTTTTCTATTCCACTTTGATTTGTACTAAGAAAAATGAATTCAATGTCTTACTAATTTGTATATTGACTGGCTTGATGCCCCCATGGATCTCTCTCGCTCTCTCTCTAATTGATTTAGGAATGTTCGAGACGAGTTTGGATTGTCCTTCCCGGCATCGG

Coding sequence (CDS)

ATGTCGAATCTATATGGGGATTTTAACCAGAAGATTGATTATGTTTTCAAAGTTGTGTTGATCGGAGATTCGGCCGTCGGCAAAACCCAACTCCTTGCTCGATTTTCACGGGATGAATTTAGCGTTGATTCCAAAGCTACTATTGGAGTCGAGTTTCAGACTAAAACTCTCGTTATTGATCAGAAAACAGTGAAAGCCCAGATATGGGATACTGCTGGACAAGAACGGTACAGAGCAGTGACAAGTGCATACTACAGAGGTGCAGTGGGAGCGATGCTGGTTTACGATATGACGAAGCGCCAATCGTTCGATCACATGTCCCGGTGGCTGGAAGAACTAAGAGGACATGCCGATAAGAACATCGTTATAATGCTGATCGGAAACAAATGCGACTTAGGAAGCCTCAGAGCAGTGCCAACAGAAGATGCACAAGAATTTGCAGAAAGAGAGAACCTGTTCTTCATGGAGACATCAGCGCTCGAGTCGACAAACGTCGAGACTGCGTTCTTCACAATTCTAAAAGAGATTTATAGGATTATCAGCAAGAAGAGCCTTGCAGCTGGGGAAGCAATAGATATTAGTGGGAATGCGGCGCTGTTTAGAGGAACTAATATTATTGTTCCTGGACAAGACCAAGATTCTGTGAAAAAAGGTTGTTGTTTTGCTTCGTGA

Protein sequence

MSNLYGDFNQKIDYVFKVVLIGDSAVGKTQLLARFSRDEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMSRWLEELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILKEIYRIISKKSLAAGEAIDISGNAALFRGTNIIVPGQDQDSVKKGCCFAS

Homology

[Close]

BLAST of Cp4.1LG10g11790 vs. ExPASy Swiss-Prot
Match: Q9LH50 (Ras-related protein RABA4d OS=Arabidopsis thaliana OX=3702 GN=RABA4D PE=1 SV=1)

HSP 1 Score: 377.1 bits (967), Expect = 1.4e-103
Identity = 188/220 (85.45%), Postives = 203/220 (92.27%), Query Frame = 0


Query: 1   MSNLYGDFNQKIDYVFKVVLIGDSAVGKTQLLARFSRDEFSVDSKATIGVEFQTKTLVID 60
           MSNLYGD+NQKIDYVFKVVLIGDSAVGKTQLLARF+R+EFSVDSKATIGVEFQTKTLVID
Sbjct: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFARNEFSVDSKATIGVEFQTKTLVID 60

Query: 61  QKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMSRWLEELRGHADKN 120
            KTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHM++WLEELRGHADKN
Sbjct: 61  NKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMAKWLEELRGHADKN 120

Query: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILKEIYRII 180
           IVIMLIGNKCDLGSLRAVPTEDAQEFA+RENLFFMETSALE+TNVETAF TIL EIYRII
Sbjct: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTILTEIYRII 180

Query: 181 SKKSLAAGEAIDISGNAALFRGTNIIVPGQDQDSVKKGCC 221
           SKKSL A +  D  GN++L +GT II+P + +   + GCC
Sbjct: 181 SKKSLTADDD-DADGNSSLLKGTRIIIPSEQESGKRGGCC 219

[Close]

BLAST of Cp4.1LG10g11790 vs. ExPASy Swiss-Prot
Match: P25766 (Ras-related protein RGP1 OS=Oryza sativa subsp. japonica OX=39947 GN=RGP1 PE=2 SV=2)

HSP 1 Score: 350.5 bits (898), Expect = 1.4e-95
Identity = 173/219 (79.00%), Postives = 196/219 (89.50%), Query Frame = 0


Query: 5   YGDFNQKIDYVFKVVLIGDSAVGKTQLLARFSRDEFSVDSKATIGVEFQTKTLVIDQKTV 64
           YG+  QKIDYVFKVVLIGDSAVGK+QLLARF+R+EF++DSKATIGVEFQT+TL ID +TV
Sbjct: 8   YGEVGQKIDYVFKVVLIGDSAVGKSQLLARFARNEFNLDSKATIGVEFQTRTLHIDARTV 67

Query: 65  KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMSRWLEELRGHADKNIVIM 124
           KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYD+TKRQSFDH++RWLEELRGHADKNIVIM
Sbjct: 68  KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDHVARWLEELRGHADKNIVIM 127

Query: 125 LIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILKEIYRIISKKS 184
           LIGNK DLG+LR VPTEDA+EFAERENLFFMETSALESTNVE AF T+L EIYRI+SKK+
Sbjct: 128 LIGNKSDLGTLRVVPTEDAKEFAERENLFFMETSALESTNVENAFMTVLTEIYRIVSKKN 187

Query: 185 LAAGEAIDISGNAALFRGTNIIVPGQD-QDSVKKGCCFA 223
           L A E +D SGN++L +GT I+VPGQ+     K  CC +
Sbjct: 188 LVANEEVDSSGNSSLLKGTKIVVPGQEPAPPTKASCCMS 226

[Close]

BLAST of Cp4.1LG10g11790 vs. ExPASy Swiss-Prot
Match: Q9FE79 (Ras-related protein RABA4c OS=Arabidopsis thaliana OX=3702 GN=RABA4C PE=2 SV=1)

HSP 1 Score: 349.4 bits (895), Expect = 3.1e-95
Identity = 171/223 (76.68%), Postives = 199/223 (89.24%), Query Frame = 0


Query: 1   MSNLYGDFNQKIDYVFKVVLIGDSAVGKTQLLARFSRDEFSVDSKATIGVEFQTKTLVID 60
           MS    +FNQKIDYVFKVVLIGDSAVGK+QLLARFSR+EFS++SKATIGVEFQT+TL ID
Sbjct: 1   MSKFQSNFNQKIDYVFKVVLIGDSAVGKSQLLARFSRNEFSIESKATIGVEFQTRTLEID 60

Query: 61  QKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMSRWLEELRGHADKN 120
           +KT+KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYD+TKRQSFDH++RWLEELRGHADKN
Sbjct: 61  RKTIKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDHVARWLEELRGHADKN 120

Query: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILKEIYRII 180
           IVIMLIGNK DLG+LRAVPTEDA+EFA+RENLFFMETSAL+S NVE +F T+L EIYRI+
Sbjct: 121 IVIMLIGNKTDLGTLRAVPTEDAKEFAQRENLFFMETSALDSNNVEPSFLTVLTEIYRIV 180

Query: 181 SKKSLAAGEAIDISGNAALFRGTNIIVPGQDQDSVKKGCCFAS 224
           SKK+L A E  +  G+++L +GT I+V G++ +S  KGCC  S
Sbjct: 181 SKKNLVANEEGESGGDSSLLQGTKIVVAGEETESKGKGCCGTS 223

[Close]

BLAST of Cp4.1LG10g11790 vs. ExPASy Swiss-Prot
Match: Q40191 (Ras-related protein Rab11A OS=Lotus japonicus OX=34305 GN=RAB11A PE=2 SV=1)

HSP 1 Score: 324.7 bits (831), Expect = 8.1e-88
Identity = 165/221 (74.66%), Postives = 192/221 (86.88%), Query Frame = 0


Query: 5   YGDFNQKIDYVFKVVLIGDSAVGKTQLLARFSRDEFSVDSKATIGVEFQTKTLVIDQKTV 64
           YGD N KIDYVFKVVLIGDSAVGK+Q+LARF+R+EFS+DSK+TIGVEFQT+TLVID KTV
Sbjct: 7   YGDANAKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKSTIGVEFQTRTLVIDHKTV 66

Query: 65  KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMSRWLEELRGHADKNIVIM 124
           KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYD+TKRQ+FDH+ RWLEELR HADKNIVI+
Sbjct: 67  KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRNHADKNIVII 126

Query: 125 LIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILKEIYRIISKKS 184
           LIGNKCDL + R VPTEDA+EFAE+E LFF+ETSALE+TNVE+AF T+L EIY I++KKS
Sbjct: 127 LIGNKCDLVNQRDVPTEDAKEFAEKEGLFFLETSALEATNVESAFTTVLTEIYNIVNKKS 186

Query: 185 LAAGEAIDISGNAALFRGTNIIVPGQDQD--SVKKGCCFAS 224
           LAA E+   +GN+A   G  II+PG  Q+  + +  CC AS
Sbjct: 187 LAADES-QGNGNSASLSGQKIIIPGPAQEIPAKRNMCCQAS 226

[Close]

BLAST of Cp4.1LG10g11790 vs. ExPASy Swiss-Prot
Match: Q40522 (Ras-related protein Rab11D OS=Nicotiana tabacum OX=4097 GN=RAB11D PE=2 SV=1)

HSP 1 Score: 312.8 bits (800), Expect = 3.2e-84
Identity = 158/221 (71.49%), Postives = 187/221 (84.62%), Query Frame = 0


Query: 1   MSNLYGDFNQKIDYVFKVVLIGDSAVGKTQLLARFSRDEFSVDSKATIGVEFQTKTLVID 60
           M++ YGD +QKIDYVFKVVLIGDSAVGK+Q+LARF+R+EFS+DSKATIGVEFQT+TL I 
Sbjct: 1   MASGYGDASQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLAIQ 60

Query: 61  QKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMSRWLEELRGHADKN 120
            K+VKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYD+TKRQ+FDH+ RWLEELR HAD+N
Sbjct: 61  HKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRAHADRN 120

Query: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILKEIYRII 180
           IVIMLIGNK DL   RAVPTEDA+EFA++E LFF+ETSA+E+TN+E AF T+L EI+ I+
Sbjct: 121 IVIMLIGNKTDLEDQRAVPTEDAKEFAQKEGLFFLETSAMEATNLEDAFLTVLTEIFNIV 180

Query: 181 SKKSLAAGEAIDISGNAALFRGTNIIVPGQDQ-DSVKKGCC 221
           +KK+LAA +    +GN A   G  I+VPG  Q    KK CC
Sbjct: 181 NKKNLAADDN-QSNGNPASLTGKKILVPGPGQVIPEKKACC 220

[Close]

BLAST of Cp4.1LG10g11790 vs. NCBI nr
Match: XP_023543598.1 (ras-related protein RABA4d-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023543600.1 ras-related protein RABA4d-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 441 bits (1134), Expect = 5.19e-156
Identity = 223/223 (100.00%), Postives = 223/223 (100.00%), Query Frame = 0


Query: 1   MSNLYGDFNQKIDYVFKVVLIGDSAVGKTQLLARFSRDEFSVDSKATIGVEFQTKTLVID 60
           MSNLYGDFNQKIDYVFKVVLIGDSAVGKTQLLARFSRDEFSVDSKATIGVEFQTKTLVID
Sbjct: 1   MSNLYGDFNQKIDYVFKVVLIGDSAVGKTQLLARFSRDEFSVDSKATIGVEFQTKTLVID 60

Query: 61  QKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMSRWLEELRGHADKN 120
           QKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMSRWLEELRGHADKN
Sbjct: 61  QKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMSRWLEELRGHADKN 120

Query: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILKEIYRII 180
           IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILKEIYRII
Sbjct: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILKEIYRII 180

Query: 181 SKKSLAAGEAIDISGNAALFRGTNIIVPGQDQDSVKKGCCFAS 223
           SKKSLAAGEAIDISGNAALFRGTNIIVPGQDQDSVKKGCCFAS
Sbjct: 181 SKKSLAAGEAIDISGNAALFRGTNIIVPGQDQDSVKKGCCFAS 223

[Close]

BLAST of Cp4.1LG10g11790 vs. NCBI nr
Match: XP_022928676.1 (ras-related protein RABA4d-like [Cucurbita moschata] >KAG6603235.1 Ras-related protein RABA4d, partial [Cucurbita argyrosperma subsp. sororia] >KAG7033540.1 Ras-related protein RABA4d [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 440 bits (1131), Expect = 1.49e-155
Identity = 222/223 (99.55%), Postives = 223/223 (100.00%), Query Frame = 0


Query: 1   MSNLYGDFNQKIDYVFKVVLIGDSAVGKTQLLARFSRDEFSVDSKATIGVEFQTKTLVID 60
           MSNLYGDFNQKIDYVFKVVLIGDSAVGKTQLLARFSRDEFSVDSKATIGVEFQTKTLVID
Sbjct: 1   MSNLYGDFNQKIDYVFKVVLIGDSAVGKTQLLARFSRDEFSVDSKATIGVEFQTKTLVID 60

Query: 61  QKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMSRWLEELRGHADKN 120
           QKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMSRWLEELRGHADKN
Sbjct: 61  QKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMSRWLEELRGHADKN 120

Query: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILKEIYRII 180
           IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILKEIYRII
Sbjct: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILKEIYRII 180

Query: 181 SKKSLAAGEAIDISGNAALFRGTNIIVPGQDQDSVKKGCCFAS 223
           SKKSLAAGEAIDISGNAALF+GTNIIVPGQDQDSVKKGCCFAS
Sbjct: 181 SKKSLAAGEAIDISGNAALFKGTNIIVPGQDQDSVKKGCCFAS 223

[Close]

BLAST of Cp4.1LG10g11790 vs. NCBI nr
Match: XP_022967899.1 (ras-related protein RABA4d-like [Cucurbita maxima])

HSP 1 Score: 437 bits (1125), Expect = 1.22e-154
Identity = 220/223 (98.65%), Postives = 223/223 (100.00%), Query Frame = 0


Query: 1   MSNLYGDFNQKIDYVFKVVLIGDSAVGKTQLLARFSRDEFSVDSKATIGVEFQTKTLVID 60
           MSNLYGDFNQKIDYVFKVVLIGDSAVGKTQLLARFSR+EFSVDSKATIGVEFQTKTLV+D
Sbjct: 1   MSNLYGDFNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVVD 60

Query: 61  QKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMSRWLEELRGHADKN 120
           QKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMSRWLEELRGHADKN
Sbjct: 61  QKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMSRWLEELRGHADKN 120

Query: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILKEIYRII 180
           IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILKEIYRII
Sbjct: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILKEIYRII 180

Query: 181 SKKSLAAGEAIDISGNAALFRGTNIIVPGQDQDSVKKGCCFAS 223
           SKKSLAAGEAIDISGNAALF+GTNIIVPGQDQDSVKKGCCFAS
Sbjct: 181 SKKSLAAGEAIDISGNAALFKGTNIIVPGQDQDSVKKGCCFAS 223

[Close]

BLAST of Cp4.1LG10g11790 vs. NCBI nr
Match: XP_008460801.1 (PREDICTED: ras-related protein RABA4d [Cucumis melo] >KAA0053214.1 ras-related protein RABA4d [Cucumis melo var. makuwa])

HSP 1 Score: 420 bits (1080), Expect = 8.87e-148
Identity = 211/223 (94.62%), Postives = 216/223 (96.86%), Query Frame = 0


Query: 1   MSNLYGDFNQKIDYVFKVVLIGDSAVGKTQLLARFSRDEFSVDSKATIGVEFQTKTLVID 60
           MSNLYGD+NQKIDYVFKVVLIGDSAVGKTQLLARFSR+EFSVDSKATIGVEFQTKTLVID
Sbjct: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVID 60

Query: 61  QKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMSRWLEELRGHADKN 120
           QKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHM+RWLEELRGHADKN
Sbjct: 61  QKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKN 120

Query: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILKEIYRII 180
           IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTIL EIYRII
Sbjct: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRII 180

Query: 181 SKKSLAAGEAIDISGNAALFRGTNIIVPGQDQDSVKKGCCFAS 223
           SKKSLAAGE IDI  N ALF+GTNI+VPGQDQDS  KGCCFAS
Sbjct: 181 SKKSLAAGEEIDIGSNPALFKGTNIVVPGQDQDSGTKGCCFAS 223

[Close]

BLAST of Cp4.1LG10g11790 vs. NCBI nr
Match: XP_038881448.1 (ras-related protein RABA4d [Benincasa hispida])

HSP 1 Score: 420 bits (1079), Expect = 1.26e-147
Identity = 210/223 (94.17%), Postives = 216/223 (96.86%), Query Frame = 0


Query: 1   MSNLYGDFNQKIDYVFKVVLIGDSAVGKTQLLARFSRDEFSVDSKATIGVEFQTKTLVID 60
           MSNLYGD+NQKIDYVFKVVLIGDSAVGKTQLLARFSR+EFSVDSKATIGVEFQTKTLVID
Sbjct: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVID 60

Query: 61  QKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMSRWLEELRGHADKN 120
           QKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHM+RWLEELRGHADKN
Sbjct: 61  QKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKN 120

Query: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILKEIYRII 180
           IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTIL EIYRII
Sbjct: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRII 180

Query: 181 SKKSLAAGEAIDISGNAALFRGTNIIVPGQDQDSVKKGCCFAS 223
           SKKSLAAGE IDI  N  LF+GTNI+VPGQDQDS +KGCCFAS
Sbjct: 181 SKKSLAAGEEIDIGSNPGLFKGTNIVVPGQDQDSGRKGCCFAS 223

[Close]

BLAST of Cp4.1LG10g11790 vs. ExPASy TrEMBL
Match: A0A6J1EKZ2 (ras-related protein RABA4d-like OS=Cucurbita moschata OX=3662 GN=LOC111435521 PE=4 SV=1)

HSP 1 Score: 440 bits (1131), Expect = 7.20e-156
Identity = 222/223 (99.55%), Postives = 223/223 (100.00%), Query Frame = 0


Query: 1   MSNLYGDFNQKIDYVFKVVLIGDSAVGKTQLLARFSRDEFSVDSKATIGVEFQTKTLVID 60
           MSNLYGDFNQKIDYVFKVVLIGDSAVGKTQLLARFSRDEFSVDSKATIGVEFQTKTLVID
Sbjct: 1   MSNLYGDFNQKIDYVFKVVLIGDSAVGKTQLLARFSRDEFSVDSKATIGVEFQTKTLVID 60

Query: 61  QKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMSRWLEELRGHADKN 120
           QKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMSRWLEELRGHADKN
Sbjct: 61  QKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMSRWLEELRGHADKN 120

Query: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILKEIYRII 180
           IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILKEIYRII
Sbjct: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILKEIYRII 180

Query: 181 SKKSLAAGEAIDISGNAALFRGTNIIVPGQDQDSVKKGCCFAS 223
           SKKSLAAGEAIDISGNAALF+GTNIIVPGQDQDSVKKGCCFAS
Sbjct: 181 SKKSLAAGEAIDISGNAALFKGTNIIVPGQDQDSVKKGCCFAS 223

[Close]

BLAST of Cp4.1LG10g11790 vs. ExPASy TrEMBL
Match: A0A6J1HY18 (ras-related protein RABA4d-like OS=Cucurbita maxima OX=3661 GN=LOC111467275 PE=4 SV=1)

HSP 1 Score: 437 bits (1125), Expect = 5.92e-155
Identity = 220/223 (98.65%), Postives = 223/223 (100.00%), Query Frame = 0


Query: 1   MSNLYGDFNQKIDYVFKVVLIGDSAVGKTQLLARFSRDEFSVDSKATIGVEFQTKTLVID 60
           MSNLYGDFNQKIDYVFKVVLIGDSAVGKTQLLARFSR+EFSVDSKATIGVEFQTKTLV+D
Sbjct: 1   MSNLYGDFNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVVD 60

Query: 61  QKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMSRWLEELRGHADKN 120
           QKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMSRWLEELRGHADKN
Sbjct: 61  QKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMSRWLEELRGHADKN 120

Query: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILKEIYRII 180
           IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILKEIYRII
Sbjct: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILKEIYRII 180

Query: 181 SKKSLAAGEAIDISGNAALFRGTNIIVPGQDQDSVKKGCCFAS 223
           SKKSLAAGEAIDISGNAALF+GTNIIVPGQDQDSVKKGCCFAS
Sbjct: 181 SKKSLAAGEAIDISGNAALFKGTNIIVPGQDQDSVKKGCCFAS 223

[Close]

BLAST of Cp4.1LG10g11790 vs. ExPASy TrEMBL
Match: A0A5A7UD85 (Ras-related protein RABA4d OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1192G00440 PE=4 SV=1)

HSP 1 Score: 420 bits (1080), Expect = 4.30e-148
Identity = 211/223 (94.62%), Postives = 216/223 (96.86%), Query Frame = 0


Query: 1   MSNLYGDFNQKIDYVFKVVLIGDSAVGKTQLLARFSRDEFSVDSKATIGVEFQTKTLVID 60
           MSNLYGD+NQKIDYVFKVVLIGDSAVGKTQLLARFSR+EFSVDSKATIGVEFQTKTLVID
Sbjct: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVID 60

Query: 61  QKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMSRWLEELRGHADKN 120
           QKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHM+RWLEELRGHADKN
Sbjct: 61  QKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKN 120

Query: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILKEIYRII 180
           IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTIL EIYRII
Sbjct: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRII 180

Query: 181 SKKSLAAGEAIDISGNAALFRGTNIIVPGQDQDSVKKGCCFAS 223
           SKKSLAAGE IDI  N ALF+GTNI+VPGQDQDS  KGCCFAS
Sbjct: 181 SKKSLAAGEEIDIGSNPALFKGTNIVVPGQDQDSGTKGCCFAS 223

[Close]

BLAST of Cp4.1LG10g11790 vs. ExPASy TrEMBL
Match: A0A1S3CDP9 (ras-related protein RABA4d OS=Cucumis melo OX=3656 GN=LOC103499562 PE=4 SV=1)

HSP 1 Score: 420 bits (1080), Expect = 4.30e-148
Identity = 211/223 (94.62%), Postives = 216/223 (96.86%), Query Frame = 0


Query: 1   MSNLYGDFNQKIDYVFKVVLIGDSAVGKTQLLARFSRDEFSVDSKATIGVEFQTKTLVID 60
           MSNLYGD+NQKIDYVFKVVLIGDSAVGKTQLLARFSR+EFSVDSKATIGVEFQTKTLVID
Sbjct: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVID 60

Query: 61  QKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMSRWLEELRGHADKN 120
           QKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHM+RWLEELRGHADKN
Sbjct: 61  QKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKN 120

Query: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILKEIYRII 180
           IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTIL EIYRII
Sbjct: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRII 180

Query: 181 SKKSLAAGEAIDISGNAALFRGTNIIVPGQDQDSVKKGCCFAS 223
           SKKSLAAGE IDI  N ALF+GTNI+VPGQDQDS  KGCCFAS
Sbjct: 181 SKKSLAAGEEIDIGSNPALFKGTNIVVPGQDQDSGTKGCCFAS 223

[Close]

BLAST of Cp4.1LG10g11790 vs. ExPASy TrEMBL
Match: A0A0A0KW90 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G152280 PE=4 SV=1)

HSP 1 Score: 419 bits (1078), Expect = 8.67e-148
Identity = 210/223 (94.17%), Postives = 217/223 (97.31%), Query Frame = 0


Query: 1   MSNLYGDFNQKIDYVFKVVLIGDSAVGKTQLLARFSRDEFSVDSKATIGVEFQTKTLVID 60
           MSNLYGD+NQKIDYVFKVVLIGDSAVGKTQLLARFSR+EFSVDSKATIGVEFQTKTLVID
Sbjct: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVID 60

Query: 61  QKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMSRWLEELRGHADKN 120
           QKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHM+RWLEELRGHADKN
Sbjct: 61  QKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKN 120

Query: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILKEIYRII 180
           IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTIL EIYRII
Sbjct: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRII 180

Query: 181 SKKSLAAGEAIDISGNAALFRGTNIIVPGQDQDSVKKGCCFAS 223
           SKKSLAAGE IDI  N ALF+GT+I+VPGQDQDS +KGCCFAS
Sbjct: 181 SKKSLAAGEEIDIGSNPALFKGTSIVVPGQDQDSGRKGCCFAS 223

[Close]

BLAST of Cp4.1LG10g11790 vs. TAIR 10
Match: AT3G12160.1 (RAB GTPase homolog A4D )

HSP 1 Score: 377.1 bits (967), Expect = 9.8e-105
Identity = 188/220 (85.45%), Postives = 203/220 (92.27%), Query Frame = 0


Query: 1   MSNLYGDFNQKIDYVFKVVLIGDSAVGKTQLLARFSRDEFSVDSKATIGVEFQTKTLVID 60
           MSNLYGD+NQKIDYVFKVVLIGDSAVGKTQLLARF+R+EFSVDSKATIGVEFQTKTLVID
Sbjct: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFARNEFSVDSKATIGVEFQTKTLVID 60

Query: 61  QKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMSRWLEELRGHADKN 120
            KTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHM++WLEELRGHADKN
Sbjct: 61  NKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMAKWLEELRGHADKN 120

Query: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILKEIYRII 180
           IVIMLIGNKCDLGSLRAVPTEDAQEFA+RENLFFMETSALE+TNVETAF TIL EIYRII
Sbjct: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTILTEIYRII 180

Query: 181 SKKSLAAGEAIDISGNAALFRGTNIIVPGQDQDSVKKGCC 221
           SKKSL A +  D  GN++L +GT II+P + +   + GCC
Sbjct: 181 SKKSLTADDD-DADGNSSLLKGTRIIIPSEQESGKRGGCC 219

[Close]

BLAST of Cp4.1LG10g11790 vs. TAIR 10
Match: AT5G47960.1 (RAB GTPase homolog A4C )

HSP 1 Score: 349.4 bits (895), Expect = 2.2e-96
Identity = 171/223 (76.68%), Postives = 199/223 (89.24%), Query Frame = 0


Query: 1   MSNLYGDFNQKIDYVFKVVLIGDSAVGKTQLLARFSRDEFSVDSKATIGVEFQTKTLVID 60
           MS    +FNQKIDYVFKVVLIGDSAVGK+QLLARFSR+EFS++SKATIGVEFQT+TL ID
Sbjct: 1   MSKFQSNFNQKIDYVFKVVLIGDSAVGKSQLLARFSRNEFSIESKATIGVEFQTRTLEID 60

Query: 61  QKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMSRWLEELRGHADKN 120
           +KT+KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYD+TKRQSFDH++RWLEELRGHADKN
Sbjct: 61  RKTIKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDHVARWLEELRGHADKN 120

Query: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILKEIYRII 180
           IVIMLIGNK DLG+LRAVPTEDA+EFA+RENLFFMETSAL+S NVE +F T+L EIYRI+
Sbjct: 121 IVIMLIGNKTDLGTLRAVPTEDAKEFAQRENLFFMETSALDSNNVEPSFLTVLTEIYRIV 180

Query: 181 SKKSLAAGEAIDISGNAALFRGTNIIVPGQDQDSVKKGCCFAS 224
           SKK+L A E  +  G+++L +GT I+V G++ +S  KGCC  S
Sbjct: 181 SKKNLVANEEGESGGDSSLLQGTKIVVAGEETESKGKGCCGTS 223

[Close]

BLAST of Cp4.1LG10g11790 vs. TAIR 10
Match: AT5G65270.1 (RAB GTPase homolog A4A )

HSP 1 Score: 307.4 bits (786), Expect = 9.6e-84
Identity = 159/219 (72.60%), Postives = 184/219 (84.02%), Query Frame = 0


Query: 5   YGDFNQKIDYVFKVVLIGDSAVGKTQLLARFSRDEFSVDSKATIGVEFQTKTLVIDQKTV 64
           YGD +QKIDYVFKVVLIGDSAVGK+Q+LAR++RDEFS+DSKATIGVEFQT+TLVID K+V
Sbjct: 7   YGDPSQKIDYVFKVVLIGDSAVGKSQILARYARDEFSLDSKATIGVEFQTRTLVIDHKSV 66

Query: 65  KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMSRWLEELRGHADKNIVIM 124
           KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYD+T+RQ+FDH+ RWLEELR HADKNIVI+
Sbjct: 67  KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITRRQTFDHIPRWLEELRAHADKNIVII 126

Query: 125 LIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILKEIYRIISKKS 184
           LIGNK DL   RA+PTEDA+EFAE+E LFF+ETSA  +TNVE+AF T+L EI+ I++KKS
Sbjct: 127 LIGNKSDLVDQRAIPTEDAKEFAEKEGLFFLETSAFNATNVESAFSTVLTEIFNIVNKKS 186

Query: 185 LAAGEAIDISGNAALFRGTNI-IVPGQDQDSVKKG--CC 221
           LAA E  + +GN     G  I IVPG  Q    K   CC
Sbjct: 187 LAASEDQE-NGNPGSLAGKKIDIVPGPGQVIPNKSNMCC 224

[Close]

BLAST of Cp4.1LG10g11790 vs. TAIR 10
Match: AT4G39990.1 (RAB GTPase homolog A4B )

HSP 1 Score: 298.9 bits (764), Expect = 3.4e-81
Identity = 152/222 (68.47%), Postives = 183/222 (82.43%), Query Frame = 0


Query: 5   YGDFNQKIDYVFKVVLIGDSAVGKTQLLARFSRDEFSVDSKATIGVEFQTKTLVIDQKTV 64
           YG  + K+DYVFKVVLIGDSAVGK+QLLARF+RDEFS+DSKATIGVEFQT+TL I+QK++
Sbjct: 7   YGGASGKVDYVFKVVLIGDSAVGKSQLLARFARDEFSMDSKATIGVEFQTRTLSIEQKSI 66

Query: 65  KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMSRWLEELRGHADKNIVIM 124
           KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKR++F+H+ RWLEELR HADKNIVI+
Sbjct: 67  KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRETFEHIPRWLEELRAHADKNIVII 126

Query: 125 LIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILKEIYRIISKKS 184
           LIGNK DL   RAVPTEDA+EFAE+E LFF+ETSAL +TNVE +F T++ +IY  ++KK+
Sbjct: 127 LIGNKSDLEDQRAVPTEDAKEFAEKEGLFFLETSALNATNVENSFNTLMTQIYNTVNKKN 186

Query: 185 LAA-GEAIDISGNAALFRGTNIIVPGQDQDSVKK--GCCFAS 224
           LA+ G+    S N     G  I++PG  Q+   K   CC +S
Sbjct: 187 LASEGD----SNNPGSLAGKKILIPGSGQEIPAKTSTCCTSS 224

[Close]

BLAST of Cp4.1LG10g11790 vs. TAIR 10
Match: AT1G09630.1 (RAB GTPase 11C )

HSP 1 Score: 270.4 bits (690), Expect = 1.3e-72
Identity = 135/215 (62.79%), Postives = 173/215 (80.47%), Query Frame = 0


Query: 9   NQKIDYVFKVVLIGDSAVGKTQLLARFSRDEFSVDSKATIGVEFQTKTLVIDQKTVKAQI 68
           +++ DY+FKVVLIGDS VGK+ LL+RF+R+EF ++SK+TIGVEF T+TL ++ +TVKAQI
Sbjct: 6   DEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTVKAQI 65

Query: 69  WDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMSRWLEELRGHADKNIVIMLIGN 128
           WDTAGQERYRA+TSAYYRGA+GA+LVYD+TK  +F+++SRWL+ELR HAD NIVIMLIGN
Sbjct: 66  WDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMLIGN 125

Query: 129 KCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILKEIYRIISKKSLAAG 188
           K DL  LRAV TEDAQ +AE+E L F+ETSALE+ NVE AF TIL E+YRIISKKS+++ 
Sbjct: 126 KTDLKHLRAVATEDAQSYAEKEGLSFIETSALEALNVEKAFQTILSEVYRIISKKSISSD 185

Query: 189 EAIDISGNAALFRGTNIIVPGQDQDSVKKGCCFAS 224
           +    + NA +  G  I V    + + KK CC +S
Sbjct: 186 QT---TANANIKEGQTIDVAATSESNAKKPCCSSS 217

The following BLAST results are available for this feature:

BLAST of Cp4.1LG10g11790 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LH50	1.4e-103	85.45	Ras-related protein RABA4d OS=Arabidopsis thaliana OX=3702 GN=RABA4D PE=1 SV=1	[more]
P25766	1.4e-95	79.00	Ras-related protein RGP1 OS=Oryza sativa subsp. japonica OX=39947 GN=RGP1 PE=2 S...	[more]
Q9FE79	3.1e-95	76.68	Ras-related protein RABA4c OS=Arabidopsis thaliana OX=3702 GN=RABA4C PE=2 SV=1	[more]
Q40191	8.1e-88	74.66	Ras-related protein Rab11A OS=Lotus japonicus OX=34305 GN=RAB11A PE=2 SV=1	[more]
Q40522	3.2e-84	71.49	Ras-related protein Rab11D OS=Nicotiana tabacum OX=4097 GN=RAB11D PE=2 SV=1	[more]

BLAST of Cp4.1LG10g11790 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023543598.1	5.19e-156	100.00	ras-related protein RABA4d-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_0235...	[more]
XP_022928676.1	1.49e-155	99.55	ras-related protein RABA4d-like [Cucurbita moschata] >KAG6603235.1 Ras-related p...	[more]
XP_022967899.1	1.22e-154	98.65	ras-related protein RABA4d-like [Cucurbita maxima]	[more]
XP_008460801.1	8.87e-148	94.62	PREDICTED: ras-related protein RABA4d [Cucumis melo] >KAA0053214.1 ras-related p...	[more]
XP_038881448.1	1.26e-147	94.17	ras-related protein RABA4d [Benincasa hispida]	[more]

BLAST of Cp4.1LG10g11790 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EKZ2	7.20e-156	99.55	ras-related protein RABA4d-like OS=Cucurbita moschata OX=3662 GN=LOC111435521 PE...	[more]
A0A6J1HY18	5.92e-155	98.65	ras-related protein RABA4d-like OS=Cucurbita maxima OX=3661 GN=LOC111467275 PE=4...	[more]
A0A5A7UD85	4.30e-148	94.62	Ras-related protein RABA4d OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaff...	[more]
A0A1S3CDP9	4.30e-148	94.62	ras-related protein RABA4d OS=Cucumis melo OX=3656 GN=LOC103499562 PE=4 SV=1	[more]
A0A0A0KW90	8.67e-148	94.17	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G152280 PE=4 SV=1	[more]

BLAST of Cp4.1LG10g11790 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G12160.1	9.8e-105	85.45	RAB GTPase homolog A4D	[more]
AT5G47960.1	2.2e-96	76.68	RAB GTPase homolog A4C	[more]
AT5G65270.1	9.6e-84	72.60	RAB GTPase homolog A4A	[more]
AT4G39990.1	3.4e-81	68.47	RAB GTPase homolog A4B	[more]
AT1G09630.1	1.3e-72	62.79	RAB GTPase 11C	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00449	RASTRNSFRMNG	coord: 154..176 score: 43.5 coord: 16..37 score: 50.9 coord: 39..55 score: 34.43 coord: 119..132 score: 52.08 coord: 57..79 score: 53.74
None	No IPR available	SMART	SM00177	arf_sub_2	coord: 1..181 e-value: 0.002 score: 4.0
None	No IPR available	SMART	SM00176	ran_sub_2	coord: 21..215 e-value: 4.5E-7 score: 39.5
None	No IPR available	SMART	SM00175	rab_sub_5	coord: 16..179 e-value: 6.9E-106 score: 367.8
None	No IPR available	SMART	SM00173	ras_sub_4	coord: 13..179 e-value: 1.8E-26 score: 103.9
None	No IPR available	PANTHER	PTHR47978:SF27	BNAA05G26830D PROTEIN	coord: 1..221
None	No IPR available	PANTHER	PTHR47978	FAMILY NOT NAMED	coord: 1..221
None	No IPR available	PROSITE	PS51419	RAB	coord: 11..223 score: 35.949276
None	No IPR available	PROSITE	PS51420	RHO	coord: 9..180 score: 9.383879
None	No IPR available	CDD	cd01868	Rab11_like	coord: 13..177 e-value: 2.70156E-123 score: 344.544
IPR001806	Small GTPase	SMART	SM00174	rho_sub_3	coord: 18..175 e-value: 3.1E-11 score: 24.4
IPR001806	Small GTPase	PFAM	PF00071	Ras	coord: 17..177 e-value: 1.1E-61 score: 207.2
IPR001806	Small GTPase	PROSITE	PS51421	RAS	coord: 10..223 score: 17.701588
IPR005225	Small GTP-binding protein domain	TIGRFAM	TIGR00231	TIGR00231	coord: 15..172 e-value: 7.7E-36 score: 121.3
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 8..220 e-value: 2.9E-70 score: 237.6
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 11..182

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG10g11790.1	Cp4.1LG10g11790.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0080092	regulation of pollen tube growth
cellular_component	GO:0045177	apical part of cell
cellular_component	GO:0070382	exocytic vesicle
cellular_component	GO:0090404	pollen tube tip
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0019900	kinase binding