Cp4.1LG10g11750 (gene) Cucurbita pepo (MU‐CU‐16) v4.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCTTTCGCTGCTTCTACGCCGATTCAGTATCGTCTTTACACCGCCGCCGCCCAATCCGAAACCCATACAGCTTTGGAAGTCCGAATGCGCTCTTTCAACCGTCTGATCTCTGCTTCTTCCTTCCCCGGAGTTCCGCCGCAAATTCTGTTTGAAACCAGACCCATTCCGGTGAACGATGCTCTGTTTCATCTCTCTCTGCGCCAACTCCATGATCCTCTGTTTCACATCCCCCGGTTACTCTCCACACTCGACATCCACGCCGCCGCCAGCGAAGTAATTGGCTGGAAAATCGCGTCTCAGATCGCCCAATTGTCCGGCGGAAACAGAGAGACGAGGTTCCACATCGTGGTGGAGGTGGATTTCATCCAAAACATCTGGATGGGTCAGGTGGCCGGAGTGTACCAGGGGCAGGGAAACGGCGGCGGACTGGTGGAGGAGACTGTTGTGGTGGATGAGTCGCCGGCGAGGAGGAGGCAGAGGAGAGGAGTGGTGGCGCGTGTTGAAGTGGAGGAAGAGAAGGAATTATTGGGAGATTGCTGTATCTGTTTGGATGAGATGAATAAGAAGAGGGAGGTGATAAGAACTCCGTGCGGGCATGTGTATCATGAATCATGCATCTTCCAGTGGCTCAACCTCCATAACTCTTGCCCTCTCTGTAAGAGGCCACTGCCATTGGAGGACAACTCAGCCTGA ATGTCTTTCGCTGCTTCTACGCCGATTCAGTATCGTCTTTACACCGCCGCCGCCCAATCCGAAACCCATACAGCTTTGGAAGTCCGAATGCGCTCTTTCAACCGTCTGATCTCTGCTTCTTCCTTCCCCGGAGTTCCGCCGCAAATTCTGTTTGAAACCAGACCCATTCCGGTGAACGATGCTCTGTTTCATCTCTCTCTGCGCCAACTCCATGATCCTCTGTTTCACATCCCCCGGTTACTCTCCACACTCGACATCCACGCCGCCGCCAGCGAAGTAATTGGCTGGAAAATCGCGTCTCAGATCGCCCAATTGTCCGGCGGAAACAGAGAGACGAGGTTCCACATCGTGGTGGAGGTGGATTTCATCCAAAACATCTGGATGGGTCAGGTGGCCGGAGTGTACCAGGGGCAGGGAAACGGCGGCGGACTGGTGGAGGAGACTGTTGTGGTGGATGAGTCGCCGGCGAGGAGGAGGCAGAGGAGAGGAGTGGTGGCGCGTGTTGAAGTGGAGGAAGAGAAGGAATTATTGGGAGATTGCTGTATCTGTTTGGATGAGATGAATAAGAAGAGGGAGGTGATAAGAACTCCGTGCGGGCATGTGTATCATGAATCATGCATCTTCCAGTGGCTCAACCTCCATAACTCTTGCCCTCTCTGTAAGAGGCCACTGCCATTGGAGGACAACTCAGCCTGA ATGTCTTTCGCTGCTTCTACGCCGATTCAGTATCGTCTTTACACCGCCGCCGCCCAATCCGAAACCCATACAGCTTTGGAAGTCCGAATGCGCTCTTTCAACCGTCTGATCTCTGCTTCTTCCTTCCCCGGAGTTCCGCCGCAAATTCTGTTTGAAACCAGACCCATTCCGGTGAACGATGCTCTGTTTCATCTCTCTCTGCGCCAACTCCATGATCCTCTGTTTCACATCCCCCGGTTACTCTCCACACTCGACATCCACGCCGCCGCCAGCGAAGTAATTGGCTGGAAAATCGCGTCTCAGATCGCCCAATTGTCCGGCGGAAACAGAGAGACGAGGTTCCACATCGTGGTGGAGGTGGATTTCATCCAAAACATCTGGATGGGTCAGGTGGCCGGAGTGTACCAGGGGCAGGGAAACGGCGGCGGACTGGTGGAGGAGACTGTTGTGGTGGATGAGTCGCCGGCGAGGAGGAGGCAGAGGAGAGGAGTGGTGGCGCGTGTTGAAGTGGAGGAAGAGAAGGAATTATTGGGAGATTGCTGTATCTGTTTGGATGAGATGAATAAGAAGAGGGAGGTGATAAGAACTCCGTGCGGGCATGTGTATCATGAATCATGCATCTTCCAGTGGCTCAACCTCCATAACTCTTGCCCTCTCTGTAAGAGGCCACTGCCATTGGAGGACAACTCAGCCTGA MSFAASTPIQYRLYTAAAQSETHTALEVRMRSFNRLISASSFPGVPPQILFETRPIPVNDALFHLSLRQLHDPLFHIPRLLSTLDIHAAASEVIGWKIASQIAQLSGGNRETRFHIVVEVDFIQNIWMGQVAGVYQGQGNGGGLVEETVVVDESPARRRQRRGVVARVEVEEEKELLGDCCICLDEMNKKREVIRTPCGHVYHESCIFQWLNLHNSCPLCKRPLPLEDNSA Homology
BLAST of Cp4.1LG10g11750 vs. ExPASy Swiss-Prot
Match: Q8LPN7 (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19950 PE=1 SV=1) HSP 1 Score: 70.1 bits (170), Expect = 3.7e-11 Identity = 24/55 (43.64%), Postives = 35/55 (63.64%), Query Frame = 0
BLAST of Cp4.1LG10g11750 vs. ExPASy Swiss-Prot
Match: P0CH30 (E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV=1) HSP 1 Score: 68.9 bits (167), Expect = 8.3e-11 Identity = 22/49 (44.90%), Postives = 33/49 (67.35%), Query Frame = 0
BLAST of Cp4.1LG10g11750 vs. ExPASy Swiss-Prot
Match: Q9VHI7 (E3 ubiquitin-protein ligase Iruka OS=Drosophila melanogaster OX=7227 GN=Iru PE=1 SV=1) HSP 1 Score: 67.4 bits (163), Expect = 2.4e-10 Identity = 30/78 (38.46%), Postives = 43/78 (55.13%), Query Frame = 0
BLAST of Cp4.1LG10g11750 vs. ExPASy Swiss-Prot
Match: Q94AK4 (E3 ubiquitin-protein ligase RZF1 OS=Arabidopsis thaliana OX=3702 GN=RZF1 PE=1 SV=1) HSP 1 Score: 65.9 bits (159), Expect = 7.1e-10 Identity = 24/52 (46.15%), Postives = 32/52 (61.54%), Query Frame = 0
BLAST of Cp4.1LG10g11750 vs. ExPASy Swiss-Prot
Match: Q6AXU4 (E3 ubiquitin-protein ligase RNF181 OS=Rattus norvegicus OX=10116 GN=Rnf181 PE=1 SV=1) HSP 1 Score: 65.5 bits (158), Expect = 9.2e-10 Identity = 24/51 (47.06%), Postives = 34/51 (66.67%), Query Frame = 0
BLAST of Cp4.1LG10g11750 vs. NCBI nr
Match: KAG6603243.1 (E3 ubiquitin-protein ligase RING1-like protein, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 432 bits (1111), Expect = 3.08e-152 Identity = 216/232 (93.10%), Postives = 222/232 (95.69%), Query Frame = 0
BLAST of Cp4.1LG10g11750 vs. NCBI nr
Match: KAG6603237.1 (E3 ubiquitin-protein ligase RING1-like protein, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 430 bits (1106), Expect = 1.78e-151 Identity = 215/232 (92.67%), Postives = 221/232 (95.26%), Query Frame = 0
BLAST of Cp4.1LG10g11750 vs. NCBI nr
Match: XP_022928677.1 (E3 ubiquitin-protein ligase arkadia-like [Cucurbita moschata]) HSP 1 Score: 383 bits (983), Expect = 3.52e-133 Identity = 190/203 (93.60%), Postives = 194/203 (95.57%), Query Frame = 0
BLAST of Cp4.1LG10g11750 vs. NCBI nr
Match: XP_038883574.1 (E3 ubiquitin-protein ligase RNF181-like [Benincasa hispida]) HSP 1 Score: 221 bits (562), Expect = 8.88e-69 Identity = 122/232 (52.59%), Postives = 158/232 (68.10%), Query Frame = 0
BLAST of Cp4.1LG10g11750 vs. NCBI nr
Match: XP_011659694.1 (E3 ubiquitin-protein ligase RDUF1 [Cucumis sativus] >KGN43356.1 hypothetical protein Csa_020163 [Cucumis sativus]) HSP 1 Score: 215 bits (548), Expect = 1.29e-66 Identity = 117/232 (50.43%), Postives = 158/232 (68.10%), Query Frame = 0
BLAST of Cp4.1LG10g11750 vs. ExPASy TrEMBL
Match: A0A6J1EKL4 (E3 ubiquitin-protein ligase arkadia-like OS=Cucurbita moschata OX=3662 GN=LOC111435522 PE=4 SV=1) HSP 1 Score: 383 bits (983), Expect = 1.70e-133 Identity = 190/203 (93.60%), Postives = 194/203 (95.57%), Query Frame = 0
BLAST of Cp4.1LG10g11750 vs. ExPASy TrEMBL
Match: A0A0A0K696 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G026750 PE=4 SV=1) HSP 1 Score: 215 bits (548), Expect = 6.25e-67 Identity = 117/232 (50.43%), Postives = 158/232 (68.10%), Query Frame = 0
BLAST of Cp4.1LG10g11750 vs. ExPASy TrEMBL
Match: A0A0A0K2W2 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G025210 PE=4 SV=1) HSP 1 Score: 215 bits (547), Expect = 8.86e-67 Identity = 117/231 (50.65%), Postives = 157/231 (67.97%), Query Frame = 0
BLAST of Cp4.1LG10g11750 vs. ExPASy TrEMBL
Match: A0A5D3E1S5 (E3 ubiquitin-protein ligase RNF181-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold208G00800 PE=4 SV=1) HSP 1 Score: 209 bits (533), Expect = 1.17e-64 Identity = 118/232 (50.86%), Postives = 156/232 (67.24%), Query Frame = 0
BLAST of Cp4.1LG10g11750 vs. ExPASy TrEMBL
Match: A0A1S4DUZ4 (E3 ubiquitin-protein ligase RNF181-like OS=Cucumis melo OX=3656 GN=LOC107990564 PE=4 SV=1) HSP 1 Score: 209 bits (533), Expect = 1.17e-64 Identity = 118/232 (50.86%), Postives = 156/232 (67.24%), Query Frame = 0
BLAST of Cp4.1LG10g11750 vs. TAIR 10
Match: AT3G19950.1 (RING/U-box superfamily protein ) HSP 1 Score: 70.1 bits (170), Expect = 2.7e-12 Identity = 24/55 (43.64%), Postives = 35/55 (63.64%), Query Frame = 0
BLAST of Cp4.1LG10g11750 vs. TAIR 10
Match: AT5G15820.1 (RING/U-box superfamily protein ) HSP 1 Score: 66.6 bits (161), Expect = 2.9e-11 Identity = 37/113 (32.74%), Postives = 53/113 (46.90%), Query Frame = 0
BLAST of Cp4.1LG10g11750 vs. TAIR 10
Match: AT1G60360.1 (RING/U-box superfamily protein ) HSP 1 Score: 66.2 bits (160), Expect = 3.8e-11 Identity = 23/55 (41.82%), Postives = 34/55 (61.82%), Query Frame = 0
BLAST of Cp4.1LG10g11750 vs. TAIR 10
Match: AT3G02340.1 (RING/U-box superfamily protein ) HSP 1 Score: 66.2 bits (160), Expect = 3.8e-11 Identity = 31/84 (36.90%), Postives = 46/84 (54.76%), Query Frame = 0
BLAST of Cp4.1LG10g11750 vs. TAIR 10
Match: AT3G56580.2 (RING/U-box superfamily protein ) HSP 1 Score: 65.9 bits (159), Expect = 5.0e-11 Identity = 24/52 (46.15%), Postives = 32/52 (61.54%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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