Cp4.1LG10g11740 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG10g11740
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionNADH:ubiquinone oxidoreductase, ESSS subunit
LocationCp4.1LG10: 8596770 .. 8597096 (-)
RNA-Seq ExpressionCp4.1LG10g11740
SyntenyCp4.1LG10g11740
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTCCGGCACCGCCTTCTCTCTTCTCTCCGGACCCGCGGTGGAGCCGCCGCCGGTCAGAGTCGTTGGACCAGTCCTGGCCACGAGGATCGGCCGAAGGGCTATCTTTTCAATCGGACGCCGCCTCCACCAGGTCAGTCCCGTAAATGGGAGGATTGGGAGCTTCCTTGTTATGTTACTAGTTTTCTTACTATTGTGATTCTTGGCGTTGGCCTCAACGCCAAGCCTGATCTCACAATTGAGACTTGGGCTCACCAGAAGGCCCTCGAGCGCCTCGAGATGGAGAACCTAGGTATCTCTGGCTCTGTATCATCTGAATCTGATTGA

mRNA sequence

ATGCTCCGGCACCGCCTTCTCTCTTCTCTCCGGACCCGCGGTGGAGCCGCCGCCGGTCAGAGTCGTTGGACCAGTCCTGGCCACGAGGATCGGCCGAAGGGCTATCTTTTCAATCGGACGCCGCCTCCACCAGGTCAGTCCCGTAAATGGGAGGATTGGGAGCTTCCTTGTTATGTTACTAGTTTTCTTACTATTGTGATTCTTGGCGTTGGCCTCAACGCCAAGCCTGATCTCACAATTGAGACTTGGGCTCACCAGAAGGCCCTCGAGCGCCTCGAGATGGAGAACCTAGGTATCTCTGGCTCTGTATCATCTGAATCTGATTGA

Coding sequence (CDS)

ATGCTCCGGCACCGCCTTCTCTCTTCTCTCCGGACCCGCGGTGGAGCCGCCGCCGGTCAGAGTCGTTGGACCAGTCCTGGCCACGAGGATCGGCCGAAGGGCTATCTTTTCAATCGGACGCCGCCTCCACCAGGTCAGTCCCGTAAATGGGAGGATTGGGAGCTTCCTTGTTATGTTACTAGTTTTCTTACTATTGTGATTCTTGGCGTTGGCCTCAACGCCAAGCCTGATCTCACAATTGAGACTTGGGCTCACCAGAAGGCCCTCGAGCGCCTCGAGATGGAGAACCTAGGTATCTCTGGCTCTGTATCATCTGAATCTGATTGA

Protein sequence

MLRHRLLSSLRTRGGAAAGQSRWTSPGHEDRPKGYLFNRTPPPPGQSRKWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLGISGSVSSESD
Homology
BLAST of Cp4.1LG10g11740 vs. NCBI nr
Match: XP_022928682.1 (uncharacterized protein LOC111435525 [Cucurbita moschata] >XP_023544082.1 uncharacterized protein LOC111803776 [Cucurbita pepo subsp. pepo] >KAG6603240.1 hypothetical protein SDJN03_03849, partial [Cucurbita argyrosperma subsp. sororia] >KAG7033542.1 hypothetical protein SDJN02_03264, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 223 bits (568), Expect = 1.81e-73
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0

Query: 1   MLRHRLLSSLRTRGGAAAGQSRWTSPGHEDRPKGYLFNRTPPPPGQSRKWEDWELPCYVT 60
           MLRHRLLSSLRTRGGAAAGQSRWTSPGHEDRPKGYLFNRTPPPPGQSRKWEDWELPCYVT
Sbjct: 1   MLRHRLLSSLRTRGGAAAGQSRWTSPGHEDRPKGYLFNRTPPPPGQSRKWEDWELPCYVT 60

Query: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLGISGSVSSESD 108
           SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLGISGSVSSESD
Sbjct: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLGISGSVSSESD 108

BLAST of Cp4.1LG10g11740 vs. NCBI nr
Match: XP_038881129.1 (uncharacterized protein LOC120072731 [Benincasa hispida])

HSP 1 Score: 216 bits (549), Expect = 2.12e-70
Identity = 104/108 (96.30%), Postives = 105/108 (97.22%), Query Frame = 0

Query: 1   MLRHRLLSSLRTRGGAAAGQSRWTSPGHEDRPKGYLFNRTPPPPGQSRKWEDWELPCYVT 60
           MLRHRLL SLRTRGGAAAGQSRWTSPGHEDRPKGYLFNRTPPPPGQSRKWEDWELPCYVT
Sbjct: 13  MLRHRLLPSLRTRGGAAAGQSRWTSPGHEDRPKGYLFNRTPPPPGQSRKWEDWELPCYVT 72

Query: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLGISGSVSSESD 108
           SFLTIVILGVGLNAKPDLTIETWAHQKALERLEME LG+SGS SSESD
Sbjct: 73  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGVSGSGSSESD 120

BLAST of Cp4.1LG10g11740 vs. NCBI nr
Match: TYK00850.1 (uncharacterized protein E5676_scaffold509G00110 [Cucumis melo var. makuwa])

HSP 1 Score: 213 bits (543), Expect = 1.18e-69
Identity = 103/108 (95.37%), Postives = 105/108 (97.22%), Query Frame = 0

Query: 1   MLRHRLLSSLRTRGGAAAGQSRWTSPGHEDRPKGYLFNRTPPPPGQSRKWEDWELPCYVT 60
           MLRHR LSSLRTRGGAAAG+SRWTSPGHE+RPKGYLFNRTPPPPGQSRKWEDWELPCYVT
Sbjct: 1   MLRHRFLSSLRTRGGAAAGRSRWTSPGHEERPKGYLFNRTPPPPGQSRKWEDWELPCYVT 60

Query: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLGISGSVSSESD 108
           SFLTIVILGVGLNAKPDLTIETWAHQKALERLEME LGISGS SSESD
Sbjct: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD 108

BLAST of Cp4.1LG10g11740 vs. NCBI nr
Match: XP_022151653.1 (uncharacterized protein LOC111019565 [Momordica charantia])

HSP 1 Score: 212 bits (540), Expect = 5.00e-69
Identity = 101/108 (93.52%), Postives = 105/108 (97.22%), Query Frame = 0

Query: 1   MLRHRLLSSLRTRGGAAAGQSRWTSPGHEDRPKGYLFNRTPPPPGQSRKWEDWELPCYVT 60
           MLRHRLL +LRTRGGAAAGQSRWTSPGHE+RPKGYLFNRTPPPPGQSRKWEDWELPCY+T
Sbjct: 13  MLRHRLLPTLRTRGGAAAGQSRWTSPGHEERPKGYLFNRTPPPPGQSRKWEDWELPCYIT 72

Query: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLGISGSVSSESD 108
           SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEN+GIS S SSESD
Sbjct: 73  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENMGISASGSSESD 120

BLAST of Cp4.1LG10g11740 vs. NCBI nr
Match: XP_008465110.1 (PREDICTED: uncharacterized protein LOC103502799 [Cucumis melo] >KAA0067818.1 uncharacterized protein E6C27_scaffold2484G00220 [Cucumis melo var. makuwa])

HSP 1 Score: 211 bits (538), Expect = 6.84e-69
Identity = 102/108 (94.44%), Postives = 104/108 (96.30%), Query Frame = 0

Query: 1   MLRHRLLSSLRTRGGAAAGQSRWTSPGHEDRPKGYLFNRTPPPPGQSRKWEDWELPCYVT 60
           MLRHR LSSLRTRGGAAAG+SRWTSPGHE+ PKGYLFNRTPPPPGQSRKWEDWELPCYVT
Sbjct: 1   MLRHRFLSSLRTRGGAAAGRSRWTSPGHEEHPKGYLFNRTPPPPGQSRKWEDWELPCYVT 60

Query: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLGISGSVSSESD 108
           SFLTIVILGVGLNAKPDLTIETWAHQKALERLEME LGISGS SSESD
Sbjct: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD 108

BLAST of Cp4.1LG10g11740 vs. ExPASy TrEMBL
Match: A0A6J1EKL9 (uncharacterized protein LOC111435525 OS=Cucurbita moschata OX=3662 GN=LOC111435525 PE=4 SV=1)

HSP 1 Score: 223 bits (568), Expect = 8.76e-74
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0

Query: 1   MLRHRLLSSLRTRGGAAAGQSRWTSPGHEDRPKGYLFNRTPPPPGQSRKWEDWELPCYVT 60
           MLRHRLLSSLRTRGGAAAGQSRWTSPGHEDRPKGYLFNRTPPPPGQSRKWEDWELPCYVT
Sbjct: 1   MLRHRLLSSLRTRGGAAAGQSRWTSPGHEDRPKGYLFNRTPPPPGQSRKWEDWELPCYVT 60

Query: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLGISGSVSSESD 108
           SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLGISGSVSSESD
Sbjct: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLGISGSVSSESD 108

BLAST of Cp4.1LG10g11740 vs. ExPASy TrEMBL
Match: A0A5D3BP74 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold509G00110 PE=4 SV=1)

HSP 1 Score: 213 bits (543), Expect = 5.72e-70
Identity = 103/108 (95.37%), Postives = 105/108 (97.22%), Query Frame = 0

Query: 1   MLRHRLLSSLRTRGGAAAGQSRWTSPGHEDRPKGYLFNRTPPPPGQSRKWEDWELPCYVT 60
           MLRHR LSSLRTRGGAAAG+SRWTSPGHE+RPKGYLFNRTPPPPGQSRKWEDWELPCYVT
Sbjct: 1   MLRHRFLSSLRTRGGAAAGRSRWTSPGHEERPKGYLFNRTPPPPGQSRKWEDWELPCYVT 60

Query: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLGISGSVSSESD 108
           SFLTIVILGVGLNAKPDLTIETWAHQKALERLEME LGISGS SSESD
Sbjct: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD 108

BLAST of Cp4.1LG10g11740 vs. ExPASy TrEMBL
Match: A0A6J1DCT8 (uncharacterized protein LOC111019565 OS=Momordica charantia OX=3673 GN=LOC111019565 PE=4 SV=1)

HSP 1 Score: 212 bits (540), Expect = 2.42e-69
Identity = 101/108 (93.52%), Postives = 105/108 (97.22%), Query Frame = 0

Query: 1   MLRHRLLSSLRTRGGAAAGQSRWTSPGHEDRPKGYLFNRTPPPPGQSRKWEDWELPCYVT 60
           MLRHRLL +LRTRGGAAAGQSRWTSPGHE+RPKGYLFNRTPPPPGQSRKWEDWELPCY+T
Sbjct: 13  MLRHRLLPTLRTRGGAAAGQSRWTSPGHEERPKGYLFNRTPPPPGQSRKWEDWELPCYIT 72

Query: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLGISGSVSSESD 108
           SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEN+GIS S SSESD
Sbjct: 73  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENMGISASGSSESD 120

BLAST of Cp4.1LG10g11740 vs. ExPASy TrEMBL
Match: A0A5A7VJ63 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2484G00220 PE=4 SV=1)

HSP 1 Score: 211 bits (538), Expect = 3.31e-69
Identity = 102/108 (94.44%), Postives = 104/108 (96.30%), Query Frame = 0

Query: 1   MLRHRLLSSLRTRGGAAAGQSRWTSPGHEDRPKGYLFNRTPPPPGQSRKWEDWELPCYVT 60
           MLRHR LSSLRTRGGAAAG+SRWTSPGHE+ PKGYLFNRTPPPPGQSRKWEDWELPCYVT
Sbjct: 1   MLRHRFLSSLRTRGGAAAGRSRWTSPGHEEHPKGYLFNRTPPPPGQSRKWEDWELPCYVT 60

Query: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLGISGSVSSESD 108
           SFLTIVILGVGLNAKPDLTIETWAHQKALERLEME LGISGS SSESD
Sbjct: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD 108

BLAST of Cp4.1LG10g11740 vs. ExPASy TrEMBL
Match: A0A1S3CN13 (uncharacterized protein LOC103502799 OS=Cucumis melo OX=3656 GN=LOC103502799 PE=4 SV=1)

HSP 1 Score: 211 bits (538), Expect = 3.31e-69
Identity = 102/108 (94.44%), Postives = 104/108 (96.30%), Query Frame = 0

Query: 1   MLRHRLLSSLRTRGGAAAGQSRWTSPGHEDRPKGYLFNRTPPPPGQSRKWEDWELPCYVT 60
           MLRHR LSSLRTRGGAAAG+SRWTSPGHE+ PKGYLFNRTPPPPGQSRKWEDWELPCYVT
Sbjct: 1   MLRHRFLSSLRTRGGAAAGRSRWTSPGHEEHPKGYLFNRTPPPPGQSRKWEDWELPCYVT 60

Query: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLGISGSVSSESD 108
           SFLTIVILGVGLNAKPDLTIETWAHQKALERLEME LGISGS SSESD
Sbjct: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD 108

BLAST of Cp4.1LG10g11740 vs. TAIR 10
Match: AT2G42310.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G57785.1); Has 115 Blast hits to 115 proteins in 48 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 44; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 165.6 bits (418), Expect = 2.2e-41
Identity = 77/103 (74.76%), Postives = 85/103 (82.52%), Query Frame = 0

Query: 2   LRHRLLSSLRTRGGAAAGQSRWTSPGHEDRPKGYLFNRTPPPPGQSRKWEDWELPCYVTS 61
           LR+R+ S     G  +AG SRW +PGHE+RPKGY  NRTPP PGQSRKWEDWELPCY+TS
Sbjct: 14  LRNRIFS---RSGSTSAGPSRWATPGHEERPKGYFMNRTPPAPGQSRKWEDWELPCYITS 73

Query: 62  FLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLGISGSVS 105
           FLTIVILGVGLNAKPDL+IETWAHQKALERLEME L  +G  S
Sbjct: 74  FLTIVILGVGLNAKPDLSIETWAHQKALERLEMEKLATAGDSS 113

BLAST of Cp4.1LG10g11740 vs. TAIR 10
Match: AT3G57785.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G42310.1); Has 121 Blast hits to 121 proteins in 51 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 48; Plants - 67; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). )

HSP 1 Score: 165.2 bits (417), Expect = 2.8e-41
Identity = 73/91 (80.22%), Postives = 79/91 (86.81%), Query Frame = 0

Query: 14  GGAAAGQSRWTSPGHEDRPKGYLFNRTPPPPGQSRKWEDWELPCYVTSFLTIVILGVGLN 73
           G  + G SRW +PGHE+RPKGY  NRTPPPPGQSRKWEDWELPCY+TSFLTIVILGVGLN
Sbjct: 23  GSTSTGPSRWATPGHEERPKGYFMNRTPPPPGQSRKWEDWELPCYITSFLTIVILGVGLN 82

Query: 74  AKPDLTIETWAHQKALERLEMENLGISGSVS 105
           AKPDL+IETWAHQKALERLEME L  +G  S
Sbjct: 83  AKPDLSIETWAHQKALERLEMEKLASAGDSS 113

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_022928682.11.81e-73100.00uncharacterized protein LOC111435525 [Cucurbita moschata] >XP_023544082.1 unchar... [more]
XP_038881129.12.12e-7096.30uncharacterized protein LOC120072731 [Benincasa hispida][more]
TYK00850.11.18e-6995.37uncharacterized protein E5676_scaffold509G00110 [Cucumis melo var. makuwa][more]
XP_022151653.15.00e-6993.52uncharacterized protein LOC111019565 [Momordica charantia][more]
XP_008465110.16.84e-6994.44PREDICTED: uncharacterized protein LOC103502799 [Cucumis melo] >KAA0067818.1 unc... [more]
Match NameE-valueIdentityDescription
A0A6J1EKL98.76e-74100.00uncharacterized protein LOC111435525 OS=Cucurbita moschata OX=3662 GN=LOC1114355... [more]
A0A5D3BP745.72e-7095.37Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A6J1DCT82.42e-6993.52uncharacterized protein LOC111019565 OS=Momordica charantia OX=3673 GN=LOC111019... [more]
A0A5A7VJ633.31e-6994.44Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A1S3CN133.31e-6994.44uncharacterized protein LOC103502799 OS=Cucumis melo OX=3656 GN=LOC103502799 PE=... [more]
Match NameE-valueIdentityDescription
AT2G42310.12.2e-4174.76unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT3G57785.12.8e-4180.22unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..49
NoneNo IPR availablePANTHERPTHR40637:SF3BNAA03G19790D PROTEINcoord: 3..98
NoneNo IPR availablePANTHERPTHR40637ESSS SUBUNIT OF NADH:UBIQUINONE OXIDOREDUCTASE (COMPLEX I) PROTEINcoord: 3..98

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG10g11740.1Cp4.1LG10g11740.1mRNA