Cp4.1LG10g11610 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG10g11610
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	tRNA-uridine aminocarboxypropyltransferase
Location	Cp4.1LG10: 8846294 .. 8847070 (+)
RNA-Seq Expression	Cp4.1LG10g11610
Synteny	Cp4.1LG10g11610

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCCAACAAACCACCACCACAACTCCGCCGCCGGATATTCCTCCGCCGCGTCCTCACCGCCCGCACGGCGGTCAATTTGCCCTAATTGCACCCGTCCCCAACCAGTCTGCCTATGCAAATTCCTTCCATCACCACCAATCGCAACCAAAACACAAATCATTATCCTTCAACATCCTCACGAGGCGCAACACAAGCTCTCCACCACCCCAATCCTCACCAAATGCCTCTTAAACGCAACCACCATCGTCAATCGCCGCCTCAAGCCCGGCCTCTCCGATCTCCTCGACCGATCTCCCACCGCCGTCTACCTCTTCCCGCCGACGCCTCACTCCTCGCCGCCAATCAACATCTCAGAACTCGACCTAACCTCCTCATCCTCGCCGGATTCCAATCTGGTTCTGATAGCGTTCGACGGAACATGGAAGCACGCGAAGGAGATGGTGCGATCGAGCGAGGAGTTTCTATCGAGATTCGCGAGGAGAATTTGCTTGGATTTCGACGAGAGCGTCGATGGCGGAAGCATTTTTGATTCGGAGTTGATTCTGAGGAAGGAGCCGCACGGCGGTTGCGTTAGCACGATGGAGGCGGTGGCGAGATGCTTGAGAGTGATGGAAGCGGATGGGGCGGAGATTGAGGTGAGATTGATCGGAGTTTTGAGGGAAATGGTTAGGTTACAGGCTGGGTTCCTGAAGCCCATGAACCCTAGGCCCAAATTGCTGAAGACGAAGAAGAAGATGAAGAACAAGAGCGAAAGGGAGGATGAAATTAGATGA

mRNA sequence

ATGGAGCCAACAAACCACCACCACAACTCCGCCGCCGGATATTCCTCCGCCGCGTCCTCACCGCCCGCACGGCGGTCAATTTGCCCTAATTGCACCCGTCCCCAACCAGTCTGCCTATGCAAATTCCTTCCATCACCACCAATCGCAACCAAAACACAAATCATTATCCTTCAACATCCTCACGAGGCGCAACACAAGCTCTCCACCACCCCAATCCTCACCAAATGCCTCTTAAACGCAACCACCATCGTCAATCGCCGCCTCAAGCCCGGCCTCTCCGATCTCCTCGACCGATCTCCCACCGCCGTCTACCTCTTCCCGCCGACGCCTCACTCCTCGCCGCCAATCAACATCTCAGAACTCGACCTAACCTCCTCATCCTCGCCGGATTCCAATCTGGTTCTGATAGCGTTCGACGGAACATGGAAGCACGCGAAGGAGATGGTGCGATCGAGCGAGGAGTTTCTATCGAGATTCGCGAGGAGAATTTGCTTGGATTTCGACGAGAGCGTCGATGGCGGAAGCATTTTTGATTCGGAGTTGATTCTGAGGAAGGAGCCGCACGGCGGTTGCGTTAGCACGATGGAGGCGGTGGCGAGATGCTTGAGAGTGATGGAAGCGGATGGGGCGGAGATTGAGGTGAGATTGATCGGAGTTTTGAGGGAAATGGTTAGGTTACAGGCTGGGTTCCTGAAGCCCATGAACCCTAGGCCCAAATTGCTGAAGACGAAGAAGAAGATGAAGAACAAGAGCGAAAGGGAGGATGAAATTAGATGA

Coding sequence (CDS)

ATGGAGCCAACAAACCACCACCACAACTCCGCCGCCGGATATTCCTCCGCCGCGTCCTCACCGCCCGCACGGCGGTCAATTTGCCCTAATTGCACCCGTCCCCAACCAGTCTGCCTATGCAAATTCCTTCCATCACCACCAATCGCAACCAAAACACAAATCATTATCCTTCAACATCCTCACGAGGCGCAACACAAGCTCTCCACCACCCCAATCCTCACCAAATGCCTCTTAAACGCAACCACCATCGTCAATCGCCGCCTCAAGCCCGGCCTCTCCGATCTCCTCGACCGATCTCCCACCGCCGTCTACCTCTTCCCGCCGACGCCTCACTCCTCGCCGCCAATCAACATCTCAGAACTCGACCTAACCTCCTCATCCTCGCCGGATTCCAATCTGGTTCTGATAGCGTTCGACGGAACATGGAAGCACGCGAAGGAGATGGTGCGATCGAGCGAGGAGTTTCTATCGAGATTCGCGAGGAGAATTTGCTTGGATTTCGACGAGAGCGTCGATGGCGGAAGCATTTTTGATTCGGAGTTGATTCTGAGGAAGGAGCCGCACGGCGGTTGCGTTAGCACGATGGAGGCGGTGGCGAGATGCTTGAGAGTGATGGAAGCGGATGGGGCGGAGATTGAGGTGAGATTGATCGGAGTTTTGAGGGAAATGGTTAGGTTACAGGCTGGGTTCCTGAAGCCCATGAACCCTAGGCCCAAATTGCTGAAGACGAAGAAGAAGATGAAGAACAAGAGCGAAAGGGAGGATGAAATTAGATGA

Protein sequence

MEPTNHHHNSAAGYSSAASSPPARRSICPNCTRPQPVCLCKFLPSPPIATKTQIIILQHPHEAQHKLSTTPILTKCLLNATTIVNRRLKPGLSDLLDRSPTAVYLFPPTPHSSPPINISELDLTSSSSPDSNLVLIAFDGTWKHAKEMVRSSEEFLSRFARRICLDFDESVDGGSIFDSELILRKEPHGGCVSTMEAVARCLRVMEADGAEIEVRLIGVLREMVRLQAGFLKPMNPRPKLLKTKKKMKNKSEREDEIR

Homology

[Close]

BLAST of Cp4.1LG10g11610 vs. ExPASy Swiss-Prot
Match: Q8NBA8 (tRNA-uridine aminocarboxypropyltransferase 2 OS=Homo sapiens OX=9606 GN=DTWD2 PE=1 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 2.5e-16
Identity = 65/204 (31.86%), Postives = 96/204 (47.06%), Query Frame = 0


Query: 9   NSAAGYSSAASSPPARRSICPNCTRPQPVCLCKFLPSPPIATKTQIIILQHPHEAQHKLS 68
           +SA G       P  RR  C  C+RPQ VCLC FLP+ P+   T + I+QHP E    L 
Sbjct: 50  DSADGLWELPVEPAERRPECTRCSRPQKVCLCPFLPAHPLHISTHLYIIQHPAEENKVLR 109

Query: 69  TTPILTKCLL--NATTIVNRRLK----PGLSDLLDRSPTAVYLFPPTPHSSPPINISELD 128
           T P+L  CL        + RR      P LS +  +S T + L+P     +   N+ E  
Sbjct: 110 TVPLLAACLPQDKCKVKIGRRFSEERDPELSTVCRKSGTLI-LYP----GAEAANLEEFI 169

Query: 129 LTSSSSPDSNLVLIAFDGTWKHAKEMVRSSEEFLSRFARRICLDFDESVDGGSIFDSELI 188
           L S   P +   +I  DGTW  AK++   +  F  R  +++ L         +   S+ +
Sbjct: 170 LDSPVYPST---IIIIDGTWSQAKDIFYKNSLF--RHPKQVQLK--------TSISSQYV 229

Query: 189 LRKEPHGGCVSTMEAVARCLRVME 207
           +R +P   C+ST+E  A  L ++E
Sbjct: 230 IRMQPTNRCLSTLECAAVALSILE 235

[Close]

BLAST of Cp4.1LG10g11610 vs. ExPASy Swiss-Prot
Match: Q4R7M4 (tRNA-uridine aminocarboxypropyltransferase 2 OS=Macaca fascicularis OX=9541 GN=DTWD2 PE=2 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 2.5e-16
Identity = 62/192 (32.29%), Postives = 92/192 (47.92%), Query Frame = 0


Query: 21  PPARRSICPNCTRPQPVCLCKFLPSPPIATKTQIIILQHPHEAQHKLSTTPILTKCLL-- 80
           P  RR  C  C+RPQ VCLC FLP+ P+   T + I+QHP E    L T P+L  CL   
Sbjct: 62  PAKRRPECSRCSRPQKVCLCPFLPAHPLHISTHLYIIQHPAEENKVLRTVPLLAACLPQD 121

Query: 81  NATTIVNRRLK----PGLSDLLDRSPTAVYLFPPTPHSSPPINISELDLTSSSSPDSNLV 140
                + RR      P LS +  +S T + L+P     +   N+ E  L S   P +   
Sbjct: 122 KCKVKIGRRFSEERDPELSTVCRKSGTLI-LYP----GAEAANLEEFILDSPVYPST--- 181

Query: 141 LIAFDGTWKHAKEMVRSSEEFLSRFARRICLDFDESVDGGSIFDSELILRKEPHGGCVST 200
           +I  DGTW  AK++   +  F  R  +++ L         +   S+ ++R +P   C+ST
Sbjct: 182 IIIIDGTWSQAKDIFYKNSLF--RHPKQVQLK--------TSISSQYVIRMQPTNRCLST 235

Query: 201 MEAVARCLRVME 207
           +E  A  L ++E
Sbjct: 242 LECAAVALSILE 235

[Close]

BLAST of Cp4.1LG10g11610 vs. ExPASy Swiss-Prot
Match: Q9D0U1 (tRNA-uridine aminocarboxypropyltransferase 2 OS=Mus musculus OX=10090 GN=Dtwd2 PE=2 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 5.8e-13
Identity = 69/244 (28.28%), Postives = 106/244 (43.44%), Query Frame = 0


Query: 24  RRSICPNCTRPQPVCLCKFLPSPPIATKTQIIILQHPHEAQHKLSTTPILTKCLL--NAT 83
           RR  C  C+RPQ VCLC +LP  P+   T + I+QHP E    L T P+L  CL     T
Sbjct: 65  RRPECGRCSRPQKVCLCPYLPVRPLQISTHLYIIQHPAEESRVLRTVPLLAACLPPDRCT 124

Query: 84  TIVNRRLKPGLSDLLD---RSPTAVYLFPPTPHSSPPINISELDLTSSSSPDSNLVLIAF 143
             + RR        L    R    + L+P     +   N+ E  L S   P +   +I  
Sbjct: 125 VKIGRRFSEERDVELATVCRDSGTLILYP----GAEATNLEEFILDSPVYPST---IILI 184

Query: 144 DGTWKHAKEMVRSSEEFLSRFARRICLDFDESVDGGSIFDSELILRKEPHGGCVSTMEAV 203
           DGTW  AK++   +  F  R  +++ L         +   S+ ++R +P   C+ST+E  
Sbjct: 185 DGTWSQAKDIFYKNSLF--RLPKQVQLK--------TSVCSQYVIRMQPTNRCLSTLECA 244

Query: 204 ARCLRVMEADGAEIEVRLIGVLREM----------VRLQAGFLKPMNPRPKLLKTKKKMK 253
           A  L ++E +   I+  L+  L+ +          +RL   +L      PK +   K+  
Sbjct: 245 AVALSILEKNNC-IQETLLRPLQALCSFQLQHGAQIRLSKEYLLRNGLYPKPMPKNKRKL 290

[Close]

BLAST of Cp4.1LG10g11610 vs. NCBI nr
Match: XP_023544253.1 (DTW domain-containing protein 2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 508 bits (1307), Expect = 3.24e-181
Identity = 258/258 (100.00%), Postives = 258/258 (100.00%), Query Frame = 0


Query: 1   MEPTNHHHNSAAGYSSAASSPPARRSICPNCTRPQPVCLCKFLPSPPIATKTQIIILQHP 60
           MEPTNHHHNSAAGYSSAASSPPARRSICPNCTRPQPVCLCKFLPSPPIATKTQIIILQHP
Sbjct: 1   MEPTNHHHNSAAGYSSAASSPPARRSICPNCTRPQPVCLCKFLPSPPIATKTQIIILQHP 60

Query: 61  HEAQHKLSTTPILTKCLLNATTIVNRRLKPGLSDLLDRSPTAVYLFPPTPHSSPPINISE 120
           HEAQHKLSTTPILTKCLLNATTIVNRRLKPGLSDLLDRSPTAVYLFPPTPHSSPPINISE
Sbjct: 61  HEAQHKLSTTPILTKCLLNATTIVNRRLKPGLSDLLDRSPTAVYLFPPTPHSSPPINISE 120

Query: 121 LDLTSSSSPDSNLVLIAFDGTWKHAKEMVRSSEEFLSRFARRICLDFDESVDGGSIFDSE 180
           LDLTSSSSPDSNLVLIAFDGTWKHAKEMVRSSEEFLSRFARRICLDFDESVDGGSIFDSE
Sbjct: 121 LDLTSSSSPDSNLVLIAFDGTWKHAKEMVRSSEEFLSRFARRICLDFDESVDGGSIFDSE 180

Query: 181 LILRKEPHGGCVSTMEAVARCLRVMEADGAEIEVRLIGVLREMVRLQAGFLKPMNPRPKL 240
           LILRKEPHGGCVSTMEAVARCLRVMEADGAEIEVRLIGVLREMVRLQAGFLKPMNPRPKL
Sbjct: 181 LILRKEPHGGCVSTMEAVARCLRVMEADGAEIEVRLIGVLREMVRLQAGFLKPMNPRPKL 240

Query: 241 LKTKKKMKNKSEREDEIR 258
           LKTKKKMKNKSEREDEIR
Sbjct: 241 LKTKKKMKNKSEREDEIR 258

[Close]

BLAST of Cp4.1LG10g11610 vs. NCBI nr
Match: XP_022928716.1 (DTW domain-containing protein 2 [Cucurbita moschata])

HSP 1 Score: 488 bits (1257), Expect = 1.09e-173
Identity = 251/258 (97.29%), Postives = 251/258 (97.29%), Query Frame = 0


Query: 1   MEPTNHHHNSAAGYSSAASSPPARRSICPNCTRPQPVCLCKFLPSPPIATKTQIIILQHP 60
           MEPTNHHHNSAA      SSPPARRSICPNCTRPQPVCLCKFLPSPPIATKTQIIILQHP
Sbjct: 1   MEPTNHHHNSAA------SSPPARRSICPNCTRPQPVCLCKFLPSPPIATKTQIIILQHP 60

Query: 61  HEAQHKLSTTPILTKCLLNATTIVNRRLKPGLSDLLDRSPTAVYLFPPTPHSSPPINISE 120
           HEAQHKLSTTPILTKCLLNATTIVNRRLKPGLSDLLDRSPTAVYLFPPTPHSSPPINISE
Sbjct: 61  HEAQHKLSTTPILTKCLLNATTIVNRRLKPGLSDLLDRSPTAVYLFPPTPHSSPPINISE 120

Query: 121 LDLTSSSSPDSNLVLIAFDGTWKHAKEMVRSSEEFLSRFARRICLDFDESVDGGSIFDSE 180
           LDLTSSSSPDSNLVLIAFDGTWKHAKEMVRSSEEFLSRFARRICLDFDESVDGGSIFDSE
Sbjct: 121 LDLTSSSSPDSNLVLIAFDGTWKHAKEMVRSSEEFLSRFARRICLDFDESVDGGSIFDSE 180

Query: 181 LILRKEPHGGCVSTMEAVARCLRVMEADGAEIEVRLIGVLREMVRLQAGFLKPMNPRPKL 240
           LILRKEPHGGCVSTMEAVARCLRVMEADGAEIEVRLIGVLREMVRLQAGFLKPMNPRPKL
Sbjct: 181 LILRKEPHGGCVSTMEAVARCLRVMEADGAEIEVRLIGVLREMVRLQAGFLKPMNPRPKL 240

Query: 241 LKTKKKMKNKSEREDEIR 258
           LKTKKK KNKSEREDEIR
Sbjct: 241 LKTKKKTKNKSEREDEIR 252

[Close]

BLAST of Cp4.1LG10g11610 vs. NCBI nr
Match: KAG7033522.1 (DTW domain-containing protein 2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 482 bits (1241), Expect = 3.00e-171
Identity = 248/258 (96.12%), Postives = 249/258 (96.51%), Query Frame = 0


Query: 1   MEPTNHHHNSAAGYSSAASSPPARRSICPNCTRPQPVCLCKFLPSPPIATKTQIIILQHP 60
           ME TNHHHNSAA      S PPARRSICPNCTRPQPVCLCKFLPSPPIATKTQIIILQHP
Sbjct: 1   MESTNHHHNSAA------SPPPARRSICPNCTRPQPVCLCKFLPSPPIATKTQIIILQHP 60

Query: 61  HEAQHKLSTTPILTKCLLNATTIVNRRLKPGLSDLLDRSPTAVYLFPPTPHSSPPINISE 120
           HEAQHKLSTTPILTKCLLNATTIVNRRLKPGLSDLLDRSPTAVYLFPPTPHSSPPINISE
Sbjct: 61  HEAQHKLSTTPILTKCLLNATTIVNRRLKPGLSDLLDRSPTAVYLFPPTPHSSPPINISE 120

Query: 121 LDLTSSSSPDSNLVLIAFDGTWKHAKEMVRSSEEFLSRFARRICLDFDESVDGGSIFDSE 180
           LDLTSSSSPDSNLVLIAFDGTWKHAKEMVRSSEEFLSRFARRICLDFDESVDGGSIFDSE
Sbjct: 121 LDLTSSSSPDSNLVLIAFDGTWKHAKEMVRSSEEFLSRFARRICLDFDESVDGGSIFDSE 180

Query: 181 LILRKEPHGGCVSTMEAVARCLRVMEADGAEIEVRLIGVLREMVRLQAGFLKPMNPRPKL 240
           LILRKEPHGGCVSTMEAVARCLRVMEADGAEIE+RLIGVLREMVRLQAGFLKPMNPRPKL
Sbjct: 181 LILRKEPHGGCVSTMEAVARCLRVMEADGAEIELRLIGVLREMVRLQAGFLKPMNPRPKL 240

Query: 241 LKTKKKMKNKSEREDEIR 258
           LKTKKK KNKSEREDEIR
Sbjct: 241 LKTKKKTKNKSEREDEIR 252

[Close]

BLAST of Cp4.1LG10g11610 vs. NCBI nr
Match: XP_022967888.1 (DTW domain-containing protein 2 [Cucurbita maxima])

HSP 1 Score: 482 bits (1240), Expect = 4.58e-171
Identity = 247/258 (95.74%), Postives = 251/258 (97.29%), Query Frame = 0


Query: 1   MEPTNHHHNSAAGYSSAASSPPARRSICPNCTRPQPVCLCKFLPSPPIATKTQIIILQHP 60
           MEPTNHHHNSAAGYSSA+SSPP RRSICPNCTRPQ VCLCKFLPSPPIATKTQIIILQHP
Sbjct: 1   MEPTNHHHNSAAGYSSASSSPPPRRSICPNCTRPQLVCLCKFLPSPPIATKTQIIILQHP 60

Query: 61  HEAQHKLSTTPILTKCLLNATTIVNRRLKPGLSDLLDRSPTAVYLFPPTPHSSPPINISE 120
           HEAQHKLSTTPILTKCLLNATTIVNRRLKPGLSDLLDRSPTAVYLFPPTPHSSPPINISE
Sbjct: 61  HEAQHKLSTTPILTKCLLNATTIVNRRLKPGLSDLLDRSPTAVYLFPPTPHSSPPINISE 120

Query: 121 LDLTSSSSPDSNLVLIAFDGTWKHAKEMVRSSEEFLSRFARRICLDFDESVDGGSIFDSE 180
           LDLTSSSS DSNLVLIAFDGTWKHAKEMVRSSEEFLSRFARRICLDFDESVDGG+IFDSE
Sbjct: 121 LDLTSSSSSDSNLVLIAFDGTWKHAKEMVRSSEEFLSRFARRICLDFDESVDGGTIFDSE 180

Query: 181 LILRKEPHGGCVSTMEAVARCLRVMEADGAEIEVRLIGVLREMVRLQAGFLKPMNPRPKL 240
           LILRKEPHGGCVSTMEAVARCLRVMEADGAEIE+RLIGVLREMVRLQAGFLKPMNPRPKL
Sbjct: 181 LILRKEPHGGCVSTMEAVARCLRVMEADGAEIELRLIGVLREMVRLQAGFLKPMNPRPKL 240

Query: 241 LKTKKKMKNKSEREDEIR 258
           +K    MKNKSEREDEIR
Sbjct: 241 VK----MKNKSEREDEIR 254

[Close]

BLAST of Cp4.1LG10g11610 vs. NCBI nr
Match: KAG6603213.1 (DTW domain-containing protein 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 424 bits (1089), Expect = 3.52e-148
Identity = 216/226 (95.58%), Postives = 217/226 (96.02%), Query Frame = 0


Query: 1   MEPTNHHHNSAAGYSSAASSPPARRSICPNCTRPQPVCLCKFLPSPPIATKTQIIILQHP 60
           ME TNHHHNSAA      S PPARRSICPNCTRPQPVCLCKFLPSPPIATKTQIIILQHP
Sbjct: 1   MESTNHHHNSAA------SPPPARRSICPNCTRPQPVCLCKFLPSPPIATKTQIIILQHP 60

Query: 61  HEAQHKLSTTPILTKCLLNATTIVNRRLKPGLSDLLDRSPTAVYLFPPTPHSSPPINISE 120
           HEAQHKLSTTPILTKCLLNATTIVNRRLKPGLSDLLDRSPTAVYLFPPTPHSSPPINISE
Sbjct: 61  HEAQHKLSTTPILTKCLLNATTIVNRRLKPGLSDLLDRSPTAVYLFPPTPHSSPPINISE 120

Query: 121 LDLTSSSSPDSNLVLIAFDGTWKHAKEMVRSSEEFLSRFARRICLDFDESVDGGSIFDSE 180
           LDLTSSSSPDSNLVLIAFDGTWKHAKEMVRSSEEFLSRFARRICLDFDESVDGGSIFDSE
Sbjct: 121 LDLTSSSSPDSNLVLIAFDGTWKHAKEMVRSSEEFLSRFARRICLDFDESVDGGSIFDSE 180

Query: 181 LILRKEPHGGCVSTMEAVARCLRVMEADGAEIEVRLIGVLREMVRL 226
           LILRKEPHGGCVSTMEAVARCLRVMEADGAEIE+RLIGVLREMV L
Sbjct: 181 LILRKEPHGGCVSTMEAVARCLRVMEADGAEIELRLIGVLREMVSL 220

[Close]

BLAST of Cp4.1LG10g11610 vs. ExPASy TrEMBL
Match: A0A6J1EL33 (tRNA-uridine aminocarboxypropyltransferase OS=Cucurbita moschata OX=3662 GN=LOC111435542 PE=4 SV=1)

HSP 1 Score: 488 bits (1257), Expect = 5.28e-174
Identity = 251/258 (97.29%), Postives = 251/258 (97.29%), Query Frame = 0


Query: 1   MEPTNHHHNSAAGYSSAASSPPARRSICPNCTRPQPVCLCKFLPSPPIATKTQIIILQHP 60
           MEPTNHHHNSAA      SSPPARRSICPNCTRPQPVCLCKFLPSPPIATKTQIIILQHP
Sbjct: 1   MEPTNHHHNSAA------SSPPARRSICPNCTRPQPVCLCKFLPSPPIATKTQIIILQHP 60

Query: 61  HEAQHKLSTTPILTKCLLNATTIVNRRLKPGLSDLLDRSPTAVYLFPPTPHSSPPINISE 120
           HEAQHKLSTTPILTKCLLNATTIVNRRLKPGLSDLLDRSPTAVYLFPPTPHSSPPINISE
Sbjct: 61  HEAQHKLSTTPILTKCLLNATTIVNRRLKPGLSDLLDRSPTAVYLFPPTPHSSPPINISE 120

Query: 121 LDLTSSSSPDSNLVLIAFDGTWKHAKEMVRSSEEFLSRFARRICLDFDESVDGGSIFDSE 180
           LDLTSSSSPDSNLVLIAFDGTWKHAKEMVRSSEEFLSRFARRICLDFDESVDGGSIFDSE
Sbjct: 121 LDLTSSSSPDSNLVLIAFDGTWKHAKEMVRSSEEFLSRFARRICLDFDESVDGGSIFDSE 180

Query: 181 LILRKEPHGGCVSTMEAVARCLRVMEADGAEIEVRLIGVLREMVRLQAGFLKPMNPRPKL 240
           LILRKEPHGGCVSTMEAVARCLRVMEADGAEIEVRLIGVLREMVRLQAGFLKPMNPRPKL
Sbjct: 181 LILRKEPHGGCVSTMEAVARCLRVMEADGAEIEVRLIGVLREMVRLQAGFLKPMNPRPKL 240

Query: 241 LKTKKKMKNKSEREDEIR 258
           LKTKKK KNKSEREDEIR
Sbjct: 241 LKTKKKTKNKSEREDEIR 252

[Close]

BLAST of Cp4.1LG10g11610 vs. ExPASy TrEMBL
Match: A0A6J1HWG2 (tRNA-uridine aminocarboxypropyltransferase OS=Cucurbita maxima OX=3661 GN=LOC111467264 PE=4 SV=1)

HSP 1 Score: 482 bits (1240), Expect = 2.22e-171
Identity = 247/258 (95.74%), Postives = 251/258 (97.29%), Query Frame = 0


Query: 1   MEPTNHHHNSAAGYSSAASSPPARRSICPNCTRPQPVCLCKFLPSPPIATKTQIIILQHP 60
           MEPTNHHHNSAAGYSSA+SSPP RRSICPNCTRPQ VCLCKFLPSPPIATKTQIIILQHP
Sbjct: 1   MEPTNHHHNSAAGYSSASSSPPPRRSICPNCTRPQLVCLCKFLPSPPIATKTQIIILQHP 60

Query: 61  HEAQHKLSTTPILTKCLLNATTIVNRRLKPGLSDLLDRSPTAVYLFPPTPHSSPPINISE 120
           HEAQHKLSTTPILTKCLLNATTIVNRRLKPGLSDLLDRSPTAVYLFPPTPHSSPPINISE
Sbjct: 61  HEAQHKLSTTPILTKCLLNATTIVNRRLKPGLSDLLDRSPTAVYLFPPTPHSSPPINISE 120

Query: 121 LDLTSSSSPDSNLVLIAFDGTWKHAKEMVRSSEEFLSRFARRICLDFDESVDGGSIFDSE 180
           LDLTSSSS DSNLVLIAFDGTWKHAKEMVRSSEEFLSRFARRICLDFDESVDGG+IFDSE
Sbjct: 121 LDLTSSSSSDSNLVLIAFDGTWKHAKEMVRSSEEFLSRFARRICLDFDESVDGGTIFDSE 180

Query: 181 LILRKEPHGGCVSTMEAVARCLRVMEADGAEIEVRLIGVLREMVRLQAGFLKPMNPRPKL 240
           LILRKEPHGGCVSTMEAVARCLRVMEADGAEIE+RLIGVLREMVRLQAGFLKPMNPRPKL
Sbjct: 181 LILRKEPHGGCVSTMEAVARCLRVMEADGAEIELRLIGVLREMVRLQAGFLKPMNPRPKL 240

Query: 241 LKTKKKMKNKSEREDEIR 258
           +K    MKNKSEREDEIR
Sbjct: 241 VK----MKNKSEREDEIR 254

[Close]

BLAST of Cp4.1LG10g11610 vs. ExPASy TrEMBL
Match: A0A5A7TJW5 (tRNA-uridine aminocarboxypropyltransferase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold335G00690 PE=4 SV=1)

HSP 1 Score: 400 bits (1028), Expect = 3.34e-139
Identity = 207/242 (85.54%), Postives = 220/242 (90.91%), Query Frame = 0


Query: 1   MEPTNHHHNSAAGYSSAASSPPARRSICPNCTRPQPVCLCKFLPSPPIATKTQIIILQHP 60
           ME TN+H N AAGYSS  SSPP RR ICPNC RPQPVCLCKFLPS PIATKT+IIILQHP
Sbjct: 1   MESTNNH-NFAAGYSS--SSPPPRRPICPNCNRPQPVCLCKFLPSSPIATKTKIIILQHP 60

Query: 61  HEAQHKLSTTPILTKCLLNATTIVNRRLKPGLSDLLDRSPTAVYLFPPTPHSSPPINISE 120
           HE+QHKLSTTPILTKCLLNATTIVNRRLKPGLS LLD+SP AV+LFPPTPHSSPPINIS+
Sbjct: 61  HESQHKLSTTPILTKCLLNATTIVNRRLKPGLSKLLDQSPPAVFLFPPTPHSSPPINISD 120

Query: 121 LDLTSSSSPDSNLVLIAFDGTWKHAKEMVRSSEEFLSRFARRICLDFDESVDGGSIFDSE 180
           L++T       +LVLIAFDGTWKHAKEMVRSSEEFLSRFARR+CLD DESV+GGSIFDSE
Sbjct: 121 LNITE------DLVLIAFDGTWKHAKEMVRSSEEFLSRFARRVCLDIDESVEGGSIFDSE 180

Query: 181 LILRKEPHGGCVSTMEAVARCLRVMEADGAEIEVRLIGVLREMVRLQAGFLKPMNPRPKL 240
           LILRKEPHGGCVSTMEAVARCLRVME DGA +E +LIGVLREMVRLQAGFLKPMNPRPKL
Sbjct: 181 LILRKEPHGGCVSTMEAVARCLRVMELDGAAVEEKLIGVLREMVRLQAGFLKPMNPRPKL 233

Query: 241 LK 242
           LK
Sbjct: 241 LK 233

[Close]

BLAST of Cp4.1LG10g11610 vs. ExPASy TrEMBL
Match: A0A5D3D883 (tRNA-uridine aminocarboxypropyltransferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold307G00010 PE=4 SV=1)

HSP 1 Score: 397 bits (1019), Expect = 7.83e-138
Identity = 206/242 (85.12%), Postives = 219/242 (90.50%), Query Frame = 0


Query: 1   MEPTNHHHNSAAGYSSAASSPPARRSICPNCTRPQPVCLCKFLPSPPIATKTQIIILQHP 60
           ME TN+H N AAGYSS  SS P RR ICPNC RPQPVCLCKFLPS PIATKT+IIILQHP
Sbjct: 1   MESTNNH-NFAAGYSS--SSRPPRRPICPNCNRPQPVCLCKFLPSSPIATKTKIIILQHP 60

Query: 61  HEAQHKLSTTPILTKCLLNATTIVNRRLKPGLSDLLDRSPTAVYLFPPTPHSSPPINISE 120
           HE+QHKLSTTPILTKCLLNATTIVNRRLKPGLS LLD+SP AV+LFPPTPHSSPPINIS+
Sbjct: 61  HESQHKLSTTPILTKCLLNATTIVNRRLKPGLSKLLDQSPPAVFLFPPTPHSSPPINISD 120

Query: 121 LDLTSSSSPDSNLVLIAFDGTWKHAKEMVRSSEEFLSRFARRICLDFDESVDGGSIFDSE 180
           L++T       +LVLIAFDGTWKHAKEMVRSSEEFLSRFARR+CLD DESV+GGSIFDSE
Sbjct: 121 LNITE------DLVLIAFDGTWKHAKEMVRSSEEFLSRFARRVCLDIDESVEGGSIFDSE 180

Query: 181 LILRKEPHGGCVSTMEAVARCLRVMEADGAEIEVRLIGVLREMVRLQAGFLKPMNPRPKL 240
           LILRKEPHGGCVSTMEAVARCLRVME DGA +E +LIGVLREMVRLQAGFLKPMNPRPKL
Sbjct: 181 LILRKEPHGGCVSTMEAVARCLRVMELDGAAVEEKLIGVLREMVRLQAGFLKPMNPRPKL 233

Query: 241 LK 242
           LK
Sbjct: 241 LK 233

[Close]

BLAST of Cp4.1LG10g11610 vs. ExPASy TrEMBL
Match: A0A0A0KW36 (tRNA-uridine aminocarboxypropyltransferase OS=Cucumis sativus OX=3659 GN=Csa_4G165850 PE=4 SV=1)

HSP 1 Score: 396 bits (1018), Expect = 1.11e-137
Identity = 208/255 (81.57%), Postives = 227/255 (89.02%), Query Frame = 0


Query: 1   MEPTNHHHNSAAGYSSAASSPPARRSICPNCTRPQPVCLCKFLPSPPIATKTQIIILQHP 60
           ME  N+H + AAGYSS  SS P RRSIC NC RPQPVCLCKFLPSPPIATKT+IIILQHP
Sbjct: 1   MESRNNH-DLAAGYSS--SSTPPRRSICSNCNRPQPVCLCKFLPSPPIATKTKIIILQHP 60

Query: 61  HEAQHKLSTTPILTKCLLNATTIVNRRLKPGLSDLLDRSPTAVYLFPPTPHSSPPINISE 120
           HE+QHKLSTTPILTKCLLNATTIVNRRLKPGLS LLD+SP AV+LFPPTPHSSPPINIS+
Sbjct: 61  HESQHKLSTTPILTKCLLNATTIVNRRLKPGLSKLLDQSPHAVFLFPPTPHSSPPINISD 120

Query: 121 LDLTSSSSPDSNLVLIAFDGTWKHAKEMVRSSEEFLSRFARRICLDFDESVDGGSIFDSE 180
           L++T       +LVLIAFDGTWKHAKEMVRSSEE+LSRFARR+CLD DESV+GGSIFDSE
Sbjct: 121 LNITE------DLVLIAFDGTWKHAKEMVRSSEEYLSRFARRVCLDIDESVEGGSIFDSE 180

Query: 181 LILRKEPHGGCVSTMEAVARCLRVMEADGAEIEVRLIGVLREMVRLQAGFLKPMNPRPKL 240
           LILRKEPHGGCVSTMEAVARCLRVME DGA +E +LIGVLREMVRLQAGFLKPMNPRPKL
Sbjct: 181 LILRKEPHGGCVSTMEAVARCLRVMELDGAAVEEKLIGVLREMVRLQAGFLKPMNPRPKL 240

Query: 241 LKTKKKMKNKSERED 255
           LK+ KK  + +E E+
Sbjct: 241 LKSLKKQTSVTEDEN 246

[Close]

BLAST of Cp4.1LG10g11610 vs. TAIR 10
Match: AT2G41750.1 (DTW domain-containing protein )

HSP 1 Score: 226.5 bits (576), Expect = 2.5e-59
Identity = 136/248 (54.84%), Postives = 167/248 (67.34%), Query Frame = 0


Query: 24  RRSICPNCTRPQPVCLCKFLPSPPIATKTQIIILQHPHEAQHKLSTTPILTKCLLNATTI 83
           RR IC NC RP  +CLC  LP+  I T T+IIIL HPHE++HKL+TTP+LTK LLN T I
Sbjct: 10  RRQICDNCDRPNAICLCHVLPADLIPTNTEIIILHHPHESRHKLNTTPLLTKSLLNVTRI 69

Query: 84  VNRRL------KPGLSDLLDRSPTAVYLFPPTPHSSPPINISE------LDLTSSSSPDS 143
             RRL        G + L   +P  +YLFP +P SSP + ISE      L+    S+P  
Sbjct: 70  PARRLLRRHISTAGGTAL--PAPPTIYLFPSSP-SSPAVTISEFKSLNLLNHREISNPPP 129

Query: 144 NLVLIAFDGTWKHAKEMVRSSEEFLSRF-ARRICLD--FDESVDGGSIFDSELILRKEPH 203
            L LI FD TWKHAKEMV++SE  L    A R+CLD   D SV GG+I+DSEL+LRKEP 
Sbjct: 130 -LRLIVFDATWKHAKEMVKASEVVLREAGAVRVCLDTEIDASVSGGTIYDSELVLRKEPF 189

Query: 204 GGCVSTMEAVARCLRVMEADGAEIEVRLIGVLREMVRLQAGFLKPMNPRPKLLKTKKKMK 257
           GGCV+T EAVARCL  +E DG EIE +LI VL+EMVR Q+ +LKPM PRPKLLK + + +
Sbjct: 190 GGCVTTAEAVARCLGAIEPDGEEIERKLISVLKEMVRFQSKYLKPMKPRPKLLKKRFQNQ 249

[Close]

BLAST of Cp4.1LG10g11610 vs. TAIR 10
Match: AT5G54880.1 (DTW domain-containing protein )

HSP 1 Score: 44.7 bits (104), Expect = 1.3e-04
Identity = 34/120 (28.33%), Postives = 53/120 (44.17%), Query Frame = 0


Query: 24  RRSICPNCTRPQPVCLCKFLPSPPIATKTQIIILQHPHEAQHKLSTTPILTKCLLNATTI 83
           +R  CP+C +P  +CLCK + SP    +  I ILQH  E +H L++T I    L N    
Sbjct: 44  KRPTCPSCDKPSQLCLCKKMRSPCFDNQVSITILQHSLERKHALNSTRIARLGLKNV--- 103

Query: 84  VNRRLKPGLSDLLDRSPTAVYLFPPTPHSSPPINISELDLTSSSSPDSNLVLIAFDGTWK 143
                  G++ + D    A +L          I+ + LD   S     N+  +  D ++K
Sbjct: 104 -------GVTTVFDVHDEAEFLIRVIGSGCSKIDTNHLD---SEYRVENVASLELDDSFK 150

The following BLAST results are available for this feature:

BLAST of Cp4.1LG10g11610 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8NBA8	2.5e-16	31.86	tRNA-uridine aminocarboxypropyltransferase 2 OS=Homo sapiens OX=9606 GN=DTWD2 PE...	[more]
Q4R7M4	2.5e-16	32.29	tRNA-uridine aminocarboxypropyltransferase 2 OS=Macaca fascicularis OX=9541 GN=D...	[more]
Q9D0U1	5.8e-13	28.28	tRNA-uridine aminocarboxypropyltransferase 2 OS=Mus musculus OX=10090 GN=Dtwd2 P...	[more]

BLAST of Cp4.1LG10g11610 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023544253.1	3.24e-181	100.00	DTW domain-containing protein 2 [Cucurbita pepo subsp. pepo]	[more]
XP_022928716.1	1.09e-173	97.29	DTW domain-containing protein 2 [Cucurbita moschata]	[more]
KAG7033522.1	3.00e-171	96.12	DTW domain-containing protein 2, partial [Cucurbita argyrosperma subsp. argyrosp...	[more]
XP_022967888.1	4.58e-171	95.74	DTW domain-containing protein 2 [Cucurbita maxima]	[more]
KAG6603213.1	3.52e-148	95.58	DTW domain-containing protein 2, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Cp4.1LG10g11610 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EL33	5.28e-174	97.29	tRNA-uridine aminocarboxypropyltransferase OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A6J1HWG2	2.22e-171	95.74	tRNA-uridine aminocarboxypropyltransferase OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A5A7TJW5	3.34e-139	85.54	tRNA-uridine aminocarboxypropyltransferase OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A5D3D883	7.83e-138	85.12	tRNA-uridine aminocarboxypropyltransferase OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A0A0KW36	1.11e-137	81.57	tRNA-uridine aminocarboxypropyltransferase OS=Cucumis sativus OX=3659 GN=Csa_4G1...	[more]

BLAST of Cp4.1LG10g11610 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G41750.1	2.5e-59	54.84	DTW domain-containing protein	[more]
AT5G54880.1	1.3e-04	28.33	DTW domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005636	DTW	SMART	SM01144	DTW_2a	coord: 24..232 e-value: 1.3E-43 score: 160.8
IPR005636	DTW	PFAM	PF03942	DTW	coord: 26..227 e-value: 1.8E-40 score: 138.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	PANTHER	PTHR21392:SF0	DTW DOMAIN-CONTAINING PROTEIN 2	coord: 5..244
IPR039262	DTW domain-containing protein DTWD2/YfiP	PANTHER	PTHR21392	UNCHARACTERIZED	coord: 5..244

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG10g11610.1	Cp4.1LG10g11610.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008033	tRNA processing
molecular_function	GO:0016432	tRNA-uridine aminocarboxypropyltransferase activity