Cp4.1LG10g11590 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG10g11590
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	exosome complex component RRP43
Location	Cp4.1LG10: 8833070 .. 8834760 (-)
RNA-Seq Expression	Cp4.1LG10g11590
Synteny	Cp4.1LG10g11590

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTATGAAGCATGCCGGTGATTAATGGTTATTTTATCATTTGAAAGTCCTTATCATTGCTCTTAGAAAGCTGAACAATGTTAATATTCTTGTTTGTTGAGTTGGTAGTTTGAAGTACTTTAAAACGATTGGTACCCATTTTCTCTGTTGAGCCATATTTTAAACTTCTTCCTGGTTTAAATTCTTAGTGCAAATCCCTGTTGTGGCTCTAAATGATGATGGAAAAGTAGTATTCGTCTCTGAGGAAGAAGGTGGAGAAAACTTTGAGAAGGAAGCTGTCAATAAAGAGAAAAGGAAACTGAAATTGAACTCCCTTCCTTTCTCATTAACATGCCTACTCCACAAGAACTACATCTTGGCTGACCCTACTGCGGAGGAGGAGTCTGTCATGGAAACTATTGTAACCGTGGTCTTGGATTCATCTGGTCAACTAGTGTCCTTCTACAAACCGGGTGGATCTGTGCTTGCCTATACATCAGCTGTTCAGGTTGGTCTCTCCTTTCTCTGGCATGTTTATTAGTTGAATCCAATTCGTTAGAGAATGGATTAGTTCCCTGGATTTCTTCCACATTTTTTGTGTGTAAAGTTTGGTCAAGCTAGTTGGATTTTCAATATGATGTTGGATTATAATAATAGTAGTGTTTGATTTTTTTGAAAACATAATTGAAAATTCTAAAAATGTTTTAAGAACACCTCATCACAGTAGAGGAAACAAGCTTTTAATTTACTCAATAAATAATGAATTGACTTGATGATTTGTATTATGATTACTATCATCATTACCATCTTTACTTTGCAAGAAACACTAACTTTGATGTGTGAAAAAGTTATAATATCATCCAAGCCCAAAAGCTTCTCTGGTTTGCTTATCTTGCCTTGGGATGCATATTCTTTATATGATATTTTGGAAGTGATTTTGTAAGGGTTAAAATAAACTCGAAAAATAATTAATTGACTTGATGGTTATATTAATATTAATTATCGTCATCATTGTTTGTAGTATCATCCAATTCCAAAAGTTTCTCTTGGTTTAGGACGCACCTTTATGTAAACTGATATTTTTACTCTAGAGTAAGAACATCTTTGAGAGTGATTTCTGATTTTGAAACGGTTAAACTCATTTTCATCCAGTTCAAAATCACTCTTAAGAAAATTGTGTTTAAAAGTGTAAAATTAAACATTAAATGAATTTTGAATGATTAAAGTCATGTTTGAGAGTGATTTTGAACTTGATGAAAATGATTTTAACTATTTCAAAATACTTTAATTGGTATATCATGATTTACGTGCTCTAATCCGTACGGGGATGGCGTGCTTGCAGGATTGTGTTGCATTGACGAGACAAAGATCAAAAGAACTACAGATGATTTTGGATGAAGCAATTTCTGGTATGGAAATTGACTAAGTTTTAGGGAGGCCTTCTATGTTTTTTTTTCCTGGTTTAATGAATGAAAAGCTGAATGGTTTGTAGGCTTCCAATTATATACTTAGTTTGGTTGTCTTCAGAATTTTGGTGATGATATTTGTTTTCCCTGGAGATCGTTTTTTACTAGAATTTGGTCTCAGGAATCAATTTTGGTCTCAGGATTTCTACATGCAAATACCTCCTTGAACTTCGCTTTTTATTCGCTTTTTATTTGCATCAACTTGATAACGATGGAACCTGACTGATAAGCAAATAGGATTTTA

mRNA sequence

ATGTTTATGAAGCATGCCGTGCAAATCCCTGTTGTGGCTCTAAATGATGATGGAAAAGTAGTATTCGTCTCTGAGGAAGAAGGTGGAGAAAACTTTGAGAAGGAAGCTGTCAATAAAGAGAAAAGGAAACTGAAATTGAACTCCCTTCCTTTCTCATTAACATGCCTACTCCACAAGAACTACATCTTGGCTGACCCTACTGCGGAGGAGGAGTCTGTCATGGAAACTATTGTAACCGTGGTCTTGGATTCATCTGGTCAACTAGTGTCCTTCTACAAACCGGGTGGATCTGTGCTTGCCTATACATCAGCTGTTCAGGATTGTGTTGCATTGACGAGACAAAGATCAAAAGAACTACAGATGATTTTGGATGAAGCAATTTCTGGTATGGAAATTGACTAAGTTTTAGGGAGGCCTTCTATGTTTTTTTTTCCTGGTTTAATGAATGAAAAGCTGAATGGTTTGTAGGCTTCCAATTATATACTTAGTTTGGTTGTCTTCAGAATTTTGGTGATGATATTTGTTTTCCCTGGAGATCGTTTTTTACTAGAATTTGGTCTCAGGAATCAATTTTGGTCTCAGGATTTCTACATGCAAATACCTCCTTGAACTTCGCTTTTTATTCGCTTTTTATTTGCATCAACTTGATAACGATGGAACCTGACTGATAAGCAAATAGGATTTTA

Coding sequence (CDS)

ATGTTTATGAAGCATGCCGTGCAAATCCCTGTTGTGGCTCTAAATGATGATGGAAAAGTAGTATTCGTCTCTGAGGAAGAAGGTGGAGAAAACTTTGAGAAGGAAGCTGTCAATAAAGAGAAAAGGAAACTGAAATTGAACTCCCTTCCTTTCTCATTAACATGCCTACTCCACAAGAACTACATCTTGGCTGACCCTACTGCGGAGGAGGAGTCTGTCATGGAAACTATTGTAACCGTGGTCTTGGATTCATCTGGTCAACTAGTGTCCTTCTACAAACCGGGTGGATCTGTGCTTGCCTATACATCAGCTGTTCAGGATTGTGTTGCATTGACGAGACAAAGATCAAAAGAACTACAGATGATTTTGGATGAAGCAATTTCTGGTATGGAAATTGACTAA

Protein sequence

MFMKHAVQIPVVALNDDGKVVFVSEEEGGENFEKEAVNKEKRKLKLNSLPFSLTCLLHKNYILADPTAEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCVALTRQRSKELQMILDEAISGMEID

Homology

[Close]

BLAST of Cp4.1LG10g11590 vs. ExPASy Swiss-Prot
Match: Q96B26 (Exosome complex component RRP43 OS=Homo sapiens OX=9606 GN=EXOSC8 PE=1 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 6.5e-08
Identity = 37/126 (29.37%), Postives = 65/126 (51.59%), Query Frame = 0


Query: 7   VQIPVVALNDDGKVVFVSEEEGGENFEKEAVNKEKRKLKLNSLPFSLT-CLLHKNYILAD 66
           VQ+P V +N++  +              E   K+K  L + + P + +  +     ++ D
Sbjct: 163 VQLPEVTINEETALA-------------EVNLKKKSYLNIRTHPVATSFAVFDDTLLIVD 222

Query: 67  PTAEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCVALTRQRSKELQMILDE 126
           PT EEE +    +T+V+D  G+L   +KPGGS L   + +QDC++    R KE++ ++DE
Sbjct: 223 PTGEEEHLATGTLTIVMDEEGKLCCLHKPGGSGLT-GAKLQDCMSRAVTRHKEVKKLMDE 274

Query: 127 AISGME 132
            I  M+
Sbjct: 283 VIKSMK 274

[Close]

BLAST of Cp4.1LG10g11590 vs. ExPASy Swiss-Prot
Match: Q2KHU3 (Exosome complex component RRP43 OS=Bos taurus OX=9913 GN=EXOSC8 PE=2 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 2.5e-07
Identity = 37/126 (29.37%), Postives = 64/126 (50.79%), Query Frame = 0


Query: 7   VQIPVVALNDDGKVVFVSEEEGGENFEKEAVNKEKRKLKLNSLPFSLT-CLLHKNYILAD 66
           VQ+P V +N++  +              E   K+K  L + + P + +  +     ++ D
Sbjct: 163 VQLPEVTINEETALA-------------EVNLKKKSCLNIRTHPVATSFAVFDDTLLIVD 222

Query: 67  PTAEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCVALTRQRSKELQMILDE 126
           PT EEE +    +TVV+D  G+L   +KPGGS L   + +QDC++    R KE++ ++DE
Sbjct: 223 PTEEEEHLATGTLTVVMDEEGRLCCLHKPGGSGLT-GAKLQDCMSRAVTRHKEVKKLMDE 274

Query: 127 AISGME 132
               M+
Sbjct: 283 VFKSMK 274

[Close]

BLAST of Cp4.1LG10g11590 vs. NCBI nr
Match: XP_023544252.1 (exosome complex component RRP43 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 239 bits (611), Expect = 8.49e-77
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0


Query: 8   QIPVVALNDDGKVVFVSEEEGGENFEKEAVNKEKRKLKLNSLPFSLTCLLHKNYILADPT 67
           QIPVVALNDDGKVVFVSEEEGGENFEKEAVNKEKRKLKLNSLPFSLTCLLHKNYILADPT
Sbjct: 179 QIPVVALNDDGKVVFVSEEEGGENFEKEAVNKEKRKLKLNSLPFSLTCLLHKNYILADPT 238

Query: 68  AEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCVALTRQRSKELQMILDEAI 127
           AEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCVALTRQRSKELQMILDEAI
Sbjct: 239 AEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCVALTRQRSKELQMILDEAI 298

Query: 128 SGMEID 133
           SGMEID
Sbjct: 299 SGMEID 304

[Close]

BLAST of Cp4.1LG10g11590 vs. NCBI nr
Match: KAG7033523.1 (Exosome complex component RRP43 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 238 bits (608), Expect = 2.42e-76
Identity = 125/126 (99.21%), Postives = 126/126 (100.00%), Query Frame = 0


Query: 8   QIPVVALNDDGKVVFVSEEEGGENFEKEAVNKEKRKLKLNSLPFSLTCLLHKNYILADPT 67
           QIPVVALNDDGKVVFVSEEEGGENFEKEAVNKE+RKLKLNSLPFSLTCLLHKNYILADPT
Sbjct: 179 QIPVVALNDDGKVVFVSEEEGGENFEKEAVNKERRKLKLNSLPFSLTCLLHKNYILADPT 238

Query: 68  AEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCVALTRQRSKELQMILDEAI 127
           AEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCVALTRQRSKELQMILDEAI
Sbjct: 239 AEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCVALTRQRSKELQMILDEAI 298

Query: 128 SGMEID 133
           SGMEID
Sbjct: 299 SGMEID 304

[Close]

BLAST of Cp4.1LG10g11590 vs. NCBI nr
Match: XP_022967860.1 (exosome complex component RRP43 [Cucurbita maxima])

HSP 1 Score: 238 bits (607), Expect = 3.43e-76
Identity = 125/126 (99.21%), Postives = 126/126 (100.00%), Query Frame = 0


Query: 8   QIPVVALNDDGKVVFVSEEEGGENFEKEAVNKEKRKLKLNSLPFSLTCLLHKNYILADPT 67
           QIPVVALNDDGKVVFVSEE+GGENFEKEAVNKEKRKLKLNSLPFSLTCLLHKNYILADPT
Sbjct: 179 QIPVVALNDDGKVVFVSEEKGGENFEKEAVNKEKRKLKLNSLPFSLTCLLHKNYILADPT 238

Query: 68  AEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCVALTRQRSKELQMILDEAI 127
           AEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCVALTRQRSKELQMILDEAI
Sbjct: 239 AEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCVALTRQRSKELQMILDEAI 298

Query: 128 SGMEID 133
           SGMEID
Sbjct: 299 SGMEID 304

[Close]

BLAST of Cp4.1LG10g11590 vs. NCBI nr
Match: XP_022928740.1 (exosome complex component RRP43 [Cucurbita moschata])

HSP 1 Score: 238 bits (606), Expect = 4.86e-76
Identity = 125/126 (99.21%), Postives = 125/126 (99.21%), Query Frame = 0


Query: 8   QIPVVALNDDGKVVFVSEEEGGENFEKEAVNKEKRKLKLNSLPFSLTCLLHKNYILADPT 67
           QIP VALNDDGKVVFVSEEEGGENFEKEAVNKEKRKLKLNSLPFSLTCLLHKNYILADPT
Sbjct: 179 QIPFVALNDDGKVVFVSEEEGGENFEKEAVNKEKRKLKLNSLPFSLTCLLHKNYILADPT 238

Query: 68  AEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCVALTRQRSKELQMILDEAI 127
           AEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCVALTRQRSKELQMILDEAI
Sbjct: 239 AEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCVALTRQRSKELQMILDEAI 298

Query: 128 SGMEID 133
           SGMEID
Sbjct: 299 SGMEID 304

[Close]

BLAST of Cp4.1LG10g11590 vs. NCBI nr
Match: TYK02492.1 (exosome complex component RRP43 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 231 bits (590), Expect = 1.20e-75
Identity = 120/133 (90.23%), Postives = 127/133 (95.49%), Query Frame = 0


Query: 1   MFMKHAVQIPVVALNDDGKVVFVSEEEGGENFEKEAVNKEKRKLKLNSLPFSLTCLLHKN 60
           + +   +QIPVVALNDDG+VVFVSEEEGGENFEKE VNKEKRKLKLNS+PFSLTCLLHK 
Sbjct: 27  LILPMILQIPVVALNDDGRVVFVSEEEGGENFEKEPVNKEKRKLKLNSVPFSLTCLLHKK 86

Query: 61  YILADPTAEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCVALTRQRSKELQ 120
           YILADPTAEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDC+ALTRQRSKELQ
Sbjct: 87  YILADPTAEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCIALTRQRSKELQ 146

Query: 121 MILDEAISGMEID 133
           +ILDEAISGMEID
Sbjct: 147 IILDEAISGMEID 159

[Close]

BLAST of Cp4.1LG10g11590 vs. ExPASy TrEMBL
Match: A0A6J1HVL5 (exosome complex component RRP43 OS=Cucurbita maxima OX=3661 GN=LOC111467240 PE=4 SV=1)

HSP 1 Score: 238 bits (607), Expect = 1.66e-76
Identity = 125/126 (99.21%), Postives = 126/126 (100.00%), Query Frame = 0


Query: 8   QIPVVALNDDGKVVFVSEEEGGENFEKEAVNKEKRKLKLNSLPFSLTCLLHKNYILADPT 67
           QIPVVALNDDGKVVFVSEE+GGENFEKEAVNKEKRKLKLNSLPFSLTCLLHKNYILADPT
Sbjct: 179 QIPVVALNDDGKVVFVSEEKGGENFEKEAVNKEKRKLKLNSLPFSLTCLLHKNYILADPT 238

Query: 68  AEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCVALTRQRSKELQMILDEAI 127
           AEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCVALTRQRSKELQMILDEAI
Sbjct: 239 AEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCVALTRQRSKELQMILDEAI 298

Query: 128 SGMEID 133
           SGMEID
Sbjct: 299 SGMEID 304

[Close]

BLAST of Cp4.1LG10g11590 vs. ExPASy TrEMBL
Match: A0A6J1ESF5 (exosome complex component RRP43 OS=Cucurbita moschata OX=3662 GN=LOC111435558 PE=4 SV=1)

HSP 1 Score: 238 bits (606), Expect = 2.36e-76
Identity = 125/126 (99.21%), Postives = 125/126 (99.21%), Query Frame = 0


Query: 8   QIPVVALNDDGKVVFVSEEEGGENFEKEAVNKEKRKLKLNSLPFSLTCLLHKNYILADPT 67
           QIP VALNDDGKVVFVSEEEGGENFEKEAVNKEKRKLKLNSLPFSLTCLLHKNYILADPT
Sbjct: 179 QIPFVALNDDGKVVFVSEEEGGENFEKEAVNKEKRKLKLNSLPFSLTCLLHKNYILADPT 238

Query: 68  AEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCVALTRQRSKELQMILDEAI 127
           AEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCVALTRQRSKELQMILDEAI
Sbjct: 239 AEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCVALTRQRSKELQMILDEAI 298

Query: 128 SGMEID 133
           SGMEID
Sbjct: 299 SGMEID 304

[Close]

BLAST of Cp4.1LG10g11590 vs. ExPASy TrEMBL
Match: A0A5D3BUK6 (Exosome complex component RRP43 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold784G00160 PE=4 SV=1)

HSP 1 Score: 231 bits (590), Expect = 5.83e-76
Identity = 120/133 (90.23%), Postives = 127/133 (95.49%), Query Frame = 0


Query: 1   MFMKHAVQIPVVALNDDGKVVFVSEEEGGENFEKEAVNKEKRKLKLNSLPFSLTCLLHKN 60
           + +   +QIPVVALNDDG+VVFVSEEEGGENFEKE VNKEKRKLKLNS+PFSLTCLLHK 
Sbjct: 27  LILPMILQIPVVALNDDGRVVFVSEEEGGENFEKEPVNKEKRKLKLNSVPFSLTCLLHKK 86

Query: 61  YILADPTAEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCVALTRQRSKELQ 120
           YILADPTAEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDC+ALTRQRSKELQ
Sbjct: 87  YILADPTAEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCIALTRQRSKELQ 146

Query: 121 MILDEAISGMEID 133
           +ILDEAISGMEID
Sbjct: 147 IILDEAISGMEID 159

[Close]

BLAST of Cp4.1LG10g11590 vs. ExPASy TrEMBL
Match: A0A0A0KYC2 (RNase_PH_C domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G165890 PE=4 SV=1)

HSP 1 Score: 230 bits (586), Expect = 9.66e-76
Identity = 120/127 (94.49%), Postives = 123/127 (96.85%), Query Frame = 0


Query: 7   VQIPVVALNDDGKVVFVSEEEGGENFEKEAVNKEKRKLKLNSLPFSLTCLLHKNYILADP 66
           VQIPVVALNDDGKVVFV EEEGGENFEKE VNKE RKLKLNS+PFSLTCLLHK YILADP
Sbjct: 6   VQIPVVALNDDGKVVFVCEEEGGENFEKEPVNKENRKLKLNSIPFSLTCLLHKKYILADP 65

Query: 67  TAEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCVALTRQRSKELQMILDEA 126
           TAEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDC+ALTRQRSKELQ+ILDEA
Sbjct: 66  TAEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCIALTRQRSKELQIILDEA 125

Query: 127 ISGMEID 133
           ISGMEID
Sbjct: 126 ISGMEID 132

[Close]

BLAST of Cp4.1LG10g11590 vs. ExPASy TrEMBL
Match: A0A1S3CEE1 (exosome complex component RRP43 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103499535 PE=4 SV=1)

HSP 1 Score: 231 bits (589), Expect = 8.89e-74
Identity = 120/126 (95.24%), Postives = 124/126 (98.41%), Query Frame = 0


Query: 8   QIPVVALNDDGKVVFVSEEEGGENFEKEAVNKEKRKLKLNSLPFSLTCLLHKNYILADPT 67
           QIPVVALNDDG+VVFVSEEEGGENFEKE VNKEKRKLKLNS+PFSLTCLLHK YILADPT
Sbjct: 179 QIPVVALNDDGRVVFVSEEEGGENFEKEPVNKEKRKLKLNSVPFSLTCLLHKKYILADPT 238

Query: 68  AEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCVALTRQRSKELQMILDEAI 127
           AEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDC+ALTRQRSKELQ+ILDEAI
Sbjct: 239 AEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCIALTRQRSKELQIILDEAI 298

Query: 128 SGMEID 133
           SGMEID
Sbjct: 299 SGMEID 304

[Close]

BLAST of Cp4.1LG10g11590 vs. TAIR 10
Match: AT1G60080.1 (3'-5'-exoribonuclease family protein )

HSP 1 Score: 161.4 bits (407), Expect = 5.0e-40
Identity = 84/130 (64.62%), Postives = 107/130 (82.31%), Query Frame = 0


Query: 7   VQIPVVALNDDGKVVFVSEEEGGEN---FEKEAVNKEKRKLKLNSLPFSLTCLLHKNYIL 66
           +QIP+VALND+G++V V+ E+  +N    EKEAVNKEKRKL L ++PFSLTC+LHKNYIL
Sbjct: 177 LQIPIVALNDNGRIVAVTGEKDQDNALITEKEAVNKEKRKLTLKNIPFSLTCILHKNYIL 236

Query: 67  ADPTAEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCVALTRQRSKELQMIL 126
           ADPT EEES+M+T+VTVVLDSS Q+VSFYK GG+ LAY+SA++ CV L R+R+KEL+ IL
Sbjct: 237 ADPTTEEESIMDTLVTVVLDSSDQMVSFYKSGGAALAYSSAIKSCVELARKRAKELKQIL 296

Query: 127 DEAISGMEID 134
            E    M+ID
Sbjct: 297 GE----MDID 302

The following BLAST results are available for this feature:

BLAST of Cp4.1LG10g11590 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q96B26	6.5e-08	29.37	Exosome complex component RRP43 OS=Homo sapiens OX=9606 GN=EXOSC8 PE=1 SV=1	[more]
Q2KHU3	2.5e-07	29.37	Exosome complex component RRP43 OS=Bos taurus OX=9913 GN=EXOSC8 PE=2 SV=1	[more]

BLAST of Cp4.1LG10g11590 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023544252.1	8.49e-77	100.00	exosome complex component RRP43 [Cucurbita pepo subsp. pepo]	[more]
KAG7033523.1	2.42e-76	99.21	Exosome complex component RRP43 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022967860.1	3.43e-76	99.21	exosome complex component RRP43 [Cucurbita maxima]	[more]
XP_022928740.1	4.86e-76	99.21	exosome complex component RRP43 [Cucurbita moschata]	[more]
TYK02492.1	1.20e-75	90.23	exosome complex component RRP43 isoform X1 [Cucumis melo var. makuwa]	[more]

BLAST of Cp4.1LG10g11590 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HVL5	1.66e-76	99.21	exosome complex component RRP43 OS=Cucurbita maxima OX=3661 GN=LOC111467240 PE=4...	[more]
A0A6J1ESF5	2.36e-76	99.21	exosome complex component RRP43 OS=Cucurbita moschata OX=3662 GN=LOC111435558 PE...	[more]
A0A5D3BUK6	5.83e-76	90.23	Exosome complex component RRP43 isoform X1 OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A0A0KYC2	9.66e-76	94.49	RNase_PH_C domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G165890 ...	[more]
A0A1S3CEE1	8.89e-74	95.24	exosome complex component RRP43 isoform X2 OS=Cucumis melo OX=3656 GN=LOC1034995...	[more]

BLAST of Cp4.1LG10g11590 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G60080.1	5.0e-40	64.62	3'-5'-exoribonuclease family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027408	PNPase/RNase PH domain superfamily	GENE3D	3.30.230.70		coord: 5..132 e-value: 5.0E-23 score: 83.9
IPR015847	Exoribonuclease, phosphorolytic domain 2	PFAM	PF03725	RNase_PH_C	coord: 50..97 e-value: 3.4E-5 score: 23.8
None	No IPR available	PANTHER	PTHR11097:SF28	SUBFAMILY NOT NAMED	coord: 7..133
None	No IPR available	PANTHER	PTHR11097	EXOSOME COMPLEX EXONUCLEASE RIBOSOMAL RNA PROCESSING PROTEIN	coord: 7..133
IPR036345	Exoribonuclease, PH domain 2 superfamily	SUPERFAMILY	55666	Ribonuclease PH domain 2-like	coord: 44..127

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG10g11590.1	Cp4.1LG10g11590.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043928	exonucleolytic catabolism of deadenylated mRNA
biological_process	GO:0000467	exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process	GO:0071028	nuclear mRNA surveillance
biological_process	GO:0071042	nuclear polyadenylation-dependent mRNA catabolic process
biological_process	GO:0071035	nuclear polyadenylation-dependent rRNA catabolic process
biological_process	GO:0071038	nuclear polyadenylation-dependent tRNA catabolic process
biological_process	GO:0034427	nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
biological_process	GO:0034473	U1 snRNA 3'-end processing
biological_process	GO:0034475	U4 snRNA 3'-end processing
biological_process	GO:0034476	U5 snRNA 3'-end processing
cellular_component	GO:0000177	cytoplasmic exosome (RNase complex)
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0000176	nuclear exosome (RNase complex)
molecular_function	GO:0004527	exonuclease activity