Cp4.1LG10g11520 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG10g11520
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	ABC transporter A family member 1 isoform A
Location	Cp4.1LG10: 8878732 .. 8882039 (+)
RNA-Seq Expression	Cp4.1LG10g11520
Synteny	Cp4.1LG10g11520

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGACTGCATGGAGGCAGCTCAAGGCTATGCTCCGCAAGAACTGGCTTCTCAAAATTCGCCATCCTTTCATCACCTCCGCGGAGGTTTTATTTATTTATTTATTTATTTTTTTATTTTTTCTCTATTCATCTTTTTACTTTTGCTGTCGCTTTACATTCCTGTTTGTTTTCATCTCAATCTATACGCTAGGGTTTTATAGTTTACTGTGGATCTCATTCATGTATCCGCCGCTGTATCGTCGAATTTCTGGAGAATTTATTGTTTCTTATTGCTGTTGAGTGTACAAGGATATGCGATATTAGCGGCGGTGTGTTTTTTTTTCATTGTTGTTCTACTTTACGCGGTGGAAATTCTTTTAGTCTTGTGTTTTTTTGATGATCATTTTTTTTTTTCATTTCTGTTACTGTTTGTTCTATTTCTGTTCTGTTCTGTTCTGGAATGGAAGATTGAATGTATGTTGTTTCTGTTTCTGGCAGATTTTACTTCCGACTGTGGTGATGTTGTTGCTGATAGCTGTAAGGACGCAAGTTGATAACACAGTCCATCCTCCGCAACCGTGAGTTTCTAAAAATGGCATCTCTCTGGCTTATGAGTGGTCTGTTATTTTGTGGTATTTGTTTTGTTCGCTTGAGTTCTGTATCGCAGTATATGTTCGTCGATCGTGCTTTTTGTTTTTCCGAATTTCGTGCTTCCCTTTCAAAATGTTTTTACGGCTATCCTCAGTGTGTAAATAAGCGTAGATATCAAGGTTTCTCTGTATTTAGTTTCGTGATGCTCTCTTTTTATGTGATACTCCTAAGTTGATAATTTTTCAGGCTGTAAATTTTCAATTATCAATAGAGAGTTTTTGAATGGAGTTGAAAGAAGAGGAGAAGTTGATATTTGTTGCAGTTTTATTTTATTTTGGATAAAAGGAGGATTTTTTATGCATATGCTTAAGCAGCTGCGGGAGTTTTTTCTTTTCAATTCTACATGCATATACAGGCTTGAATATGTGCATTCCTATAGTTGGTTTTCCGTTAAATTTCTTTAATTGGTGGAGCAAAGGAGTTGTCAGCGAACGGATTGGCTCCAACGATTTGCGCATGTTTGTATATGCACTCCCGTTTTGTTTCAAAGACATAATTCTTTTTTTCCATTTTTCTTTTGGTGTCAGGCATATACGGAAAGGGATGTTTGTAGAAGTTGGCAAAGGTATATCCCCGAGTTTCCAGGAAGTCCTGCAGTCGCTGAAGAAAAATGAAGAATATTTGGCTTTTGCACCAGATACAGTTGAGACAAAGATGATGCTACGTATGATGTCAATAAAATTTCCTCTTGTAGAGGTACATATCATTGCTTACCTTGAACTTTTTTTAACAAGTAACAAATTTTTATTGATATAGTGAAAAGAAAAAAAGAAATGTTCGAAGGTTACAATCTCTCGAATGGAGTGAGAATAGAAGAAATAGAATATAAGAAAGAAAATACAAAATCAAGAACTTAGAAACAATCACAATCTTTTTGTTTATGCACGTCAATGAAAACCAAACATACTTGAGGAATGGACTACCTAGAGACCAAACAAATCTGAAATTATTGTTGTCTTGAAAATGGAAGAAATTTTGGACTAACCATTAATGCTCCTAAAAACTGGAATAAATGTGGGATGAAAAAAGGCTTCTTCCAAGAAGTTCATACCAATGAATTAAATATTGACTAACTAGTCACATACCAAGAAGTTCATAACTTTTCGGGTAAGGAGAATTTGACAACTAGTCACATCCCCCTATAGTGCATTTTGTGGCGATTCAAGTCTAACAGGCTTAGACGTGATTTCGCCGAATGATCATACAAAATCAGGGGGAGGAGTTGACAACTAGTCACACCCCCTTATAGTTCATTTTGAGGCGATTCAGATATGGCAGACCTAGACATGATTTCGCCGAGTAGTCGTACAAACAGAAAATACAATAGTAAGGCAAGACAATATGAAATTACATAAATGGTTTGACGTGGCATGGGCATGCGGCCACGAGCAACATGCTCTAGACGAGCATGACTGTGGCACCGAGCAACGTCTACATGTTCCTAAGATCAGTAAATTACCTGGCATTATGCCATTTTTTCAGGCTGGAACAGTAAATTACCTGCTCATGTACTCTCATCGGGTTAGAACAGTAAAACTACATGTCATTATCCCCTTTTTAGGCTGGGACAATAAACTATCTGCTCATGTACCCTCAATGGGTTAGAACAGTAAAACTACCTGTCACTACGTCACTCAGGCTAGAACAGTAAAAAGTCCATGGCTCCCCCCACTAGGCACCACCATAAGTATTTCAGTAGTATACCCTCTTTGACTCCTGAAATCCTCTATGACTGACAACTAAGTCATGTATAACAAGTAGACCCTAACCTCTGTTGGTTAGTTCACGAATAAGGATTGCATCTTATCCGTTCTTACAAGGTAACTGGTCAACCCAAGGAGGCTATGGAACTCATGACTAGGTGCTAGGACCAAAATACGCGAACCAGTAACTCATAGTCTACGGAAACATAACTAGCACTCTACGGTACATATCGATAGTCCAACTCATACTGGGCAATAACGGCCTATCCAGACTCTAAATCAATGCATAACAATGAATAAAGACATACAACATGCTCATCATGCTTATTAAGTGATAATAATCCAACCTCTATTAAGTCCAATTATCTATCAGATCATGCATGCAAAAGCTGTATGACGGTAAATATAATTAAGTGGTAAACTATTCACATGATCTAAGCACAATTCTCATGAGACTAGGTCAAACTGGGCTCCTAAACATAATACTCAATCATTGACCTCAATCCTAATCGACTCCTACAAGTATTTCTTAAAAACTTGCTCCATATGGTTACTTACTTGATTGTAGACTTCCCGAGTTTGTTTCGGGTCTTCGAGGATATTCCAAATTTCTCCAAAATTCCTCACTATGCCCTAAATTAAGTCAAAACAATAAAACTGATGACAATGGCTAGCTTCAAATTCGTTAAAGAGAAGGTTGAGAAACTAACCGTTGACTGTACGGTCTTCTCCAACTTGCGTGCGTGCCATTCTGCTTTCCTTCTTTTTTTTTTCTTTTTTTTGAAAAAATCTTTTATTTATTTTCTTAAAATTCTAGATGTTAGAGCTAATACATACCACATTGTAAACCTCTCTTTGCTAATGTATACCACATTGTGCTGGCAGGTAGTCACTAAAGTTTACAAAGACGAAGAAGAGCTAGAAAGCTACATTCGTTCTGATCTGTATGGAAACTGCAATGTTGTTGAGTAA

mRNA sequence

ATGGCGACTGCATGGAGGCAGCTCAAGGCTATGCTCCGCAAGAACTGGCTTCTCAAAATTCGCCATCCTTTCATCACCTCCGCGGAGATTTTACTTCCGACTGTGGTGATGTTGTTGCTGATAGCTGTAAGGACGCAAGTTGATAACACAGTCCATCCTCCGCAACCGCATATACGGAAAGGGATGTTTGTAGAAGTTGGCAAAGGTATATCCCCGAGTTTCCAGGAAGTCCTGCAGTCGCTGAAGAAAAATGAAGAATATTTGGCTTTTGCACCAGATACAGTTGAGACAAAGATGATGCTACGTATGATGTCAATAAAATTTCCTCTTGTAGAGGTAGTCACTAAAGTTTACAAAGACGAAGAAGAGCTAGAAAGCTACATTCGTTCTGATCTGTATGGAAACTGCAATGTTGTTGAGTAA

Coding sequence (CDS)

ATGGCGACTGCATGGAGGCAGCTCAAGGCTATGCTCCGCAAGAACTGGCTTCTCAAAATTCGCCATCCTTTCATCACCTCCGCGGAGATTTTACTTCCGACTGTGGTGATGTTGTTGCTGATAGCTGTAAGGACGCAAGTTGATAACACAGTCCATCCTCCGCAACCGCATATACGGAAAGGGATGTTTGTAGAAGTTGGCAAAGGTATATCCCCGAGTTTCCAGGAAGTCCTGCAGTCGCTGAAGAAAAATGAAGAATATTTGGCTTTTGCACCAGATACAGTTGAGACAAAGATGATGCTACGTATGATGTCAATAAAATTTCCTCTTGTAGAGGTAGTCACTAAAGTTTACAAAGACGAAGAAGAGCTAGAAAGCTACATTCGTTCTGATCTGTATGGAAACTGCAATGTTGTTGAGTAA

Protein sequence

MATAWRQLKAMLRKNWLLKIRHPFITSAEILLPTVVMLLLIAVRTQVDNTVHPPQPHIRKGMFVEVGKGISPSFQEVLQSLKKNEEYLAFAPDTVETKMMLRMMSIKFPLVEVVTKVYKDEEELESYIRSDLYGNCNVVE

Homology

[Close]

BLAST of Cp4.1LG10g11520 vs. ExPASy Swiss-Prot
Match: Q84M24 (ABC transporter A family member 1 OS=Arabidopsis thaliana OX=3702 GN=ABCA1 PE=2 SV=2)

HSP 1 Score: 169.1 bits (427), Expect = 3.6e-41
Identity = 87/139 (62.59%), Postives = 108/139 (77.70%), Query Frame = 0


Query: 1   MATAWRQLKAMLRKNWLLKIRHPFITSAEILLPTVVMLLLIAVRTQVDNTVHPPQPHIRK 60
           M ++ RQ KAMLRKNWLLK RHPF+TSAEILLPT+VMLLLIAVRT+VD T+HP   +I K
Sbjct: 1   MGSSKRQFKAMLRKNWLLKTRHPFVTSAEILLPTIVMLLLIAVRTRVDTTIHPAHSNIDK 60

Query: 61  GMFVEVGKGISPSFQEVLQSLKKNEEYLAFAPDTVETKMMLRMMSIKFPLVEVVTKVYKD 120
              VEVGKG SPSF EVL+ L    ++LAFAPDT ET  M+ ++S+KFP + +VTK++KD
Sbjct: 61  DTVVEVGKGNSPSFPEVLKLLLAEGDFLAFAPDTDETNNMIDILSLKFPELRLVTKIFKD 120

Query: 121 EEELESYIRSDLYGNCNVV 140
           + ELE+YI S  YG C+ V
Sbjct: 121 DIELETYITSAHYGVCSEV 139

[Close]

BLAST of Cp4.1LG10g11520 vs. NCBI nr
Match: XP_023543867.1 (ABC transporter A family member 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 273 bits (699), Expect = 5.33e-82
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MATAWRQLKAMLRKNWLLKIRHPFITSAEILLPTVVMLLLIAVRTQVDNTVHPPQPHIRK 60
           MATAWRQLKAMLRKNWLLKIRHPFITSAEILLPTVVMLLLIAVRTQVDNTVHPPQPHIRK
Sbjct: 1   MATAWRQLKAMLRKNWLLKIRHPFITSAEILLPTVVMLLLIAVRTQVDNTVHPPQPHIRK 60

Query: 61  GMFVEVGKGISPSFQEVLQSLKKNEEYLAFAPDTVETKMMLRMMSIKFPLVEVVTKVYKD 120
           GMFVEVGKGISPSFQEVLQSLKKNEEYLAFAPDTVETKMMLRMMSIKFPLVEVVTKVYKD
Sbjct: 61  GMFVEVGKGISPSFQEVLQSLKKNEEYLAFAPDTVETKMMLRMMSIKFPLVEVVTKVYKD 120

Query: 121 EEELESYIRSDLYGNCNVVE 140
           EEELESYIRSDLYGNCNVVE
Sbjct: 121 EEELESYIRSDLYGNCNVVE 140

[Close]

BLAST of Cp4.1LG10g11520 vs. NCBI nr
Match: KAG6603210.1 (ABC transporter A family member 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 273 bits (699), Expect = 5.33e-82
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MATAWRQLKAMLRKNWLLKIRHPFITSAEILLPTVVMLLLIAVRTQVDNTVHPPQPHIRK 60
           MATAWRQLKAMLRKNWLLKIRHPFITSAEILLPTVVMLLLIAVRTQVDNTVHPPQPHIRK
Sbjct: 1   MATAWRQLKAMLRKNWLLKIRHPFITSAEILLPTVVMLLLIAVRTQVDNTVHPPQPHIRK 60

Query: 61  GMFVEVGKGISPSFQEVLQSLKKNEEYLAFAPDTVETKMMLRMMSIKFPLVEVVTKVYKD 120
           GMFVEVGKGISPSFQEVLQSLKKNEEYLAFAPDTVETKMMLRMMSIKFPLVEVVTKVYKD
Sbjct: 61  GMFVEVGKGISPSFQEVLQSLKKNEEYLAFAPDTVETKMMLRMMSIKFPLVEVVTKVYKD 120

Query: 121 EEELESYIRSDLYGNCNVVE 140
           EEELESYIRSDLYGNCNVVE
Sbjct: 121 EEELESYIRSDLYGNCNVVE 140

[Close]

BLAST of Cp4.1LG10g11520 vs. NCBI nr
Match: XP_022928622.1 (ABC transporter A family member 1 isoform X1 [Cucurbita moschata])

HSP 1 Score: 273 bits (699), Expect = 5.33e-82
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MATAWRQLKAMLRKNWLLKIRHPFITSAEILLPTVVMLLLIAVRTQVDNTVHPPQPHIRK 60
           MATAWRQLKAMLRKNWLLKIRHPFITSAEILLPTVVMLLLIAVRTQVDNTVHPPQPHIRK
Sbjct: 1   MATAWRQLKAMLRKNWLLKIRHPFITSAEILLPTVVMLLLIAVRTQVDNTVHPPQPHIRK 60

Query: 61  GMFVEVGKGISPSFQEVLQSLKKNEEYLAFAPDTVETKMMLRMMSIKFPLVEVVTKVYKD 120
           GMFVEVGKGISPSFQEVLQSLKKNEEYLAFAPDTVETKMMLRMMSIKFPLVEVVTKVYKD
Sbjct: 61  GMFVEVGKGISPSFQEVLQSLKKNEEYLAFAPDTVETKMMLRMMSIKFPLVEVVTKVYKD 120

Query: 121 EEELESYIRSDLYGNCNVVE 140
           EEELESYIRSDLYGNCNVVE
Sbjct: 121 EEELESYIRSDLYGNCNVVE 140

[Close]

BLAST of Cp4.1LG10g11520 vs. NCBI nr
Match: XP_022967690.1 (ABC transporter A family member 1 [Cucurbita maxima] >XP_022967692.1 ABC transporter A family member 1 [Cucurbita maxima])

HSP 1 Score: 270 bits (690), Expect = 8.66e-81
Identity = 138/140 (98.57%), Postives = 138/140 (98.57%), Query Frame = 0


Query: 1   MATAWRQLKAMLRKNWLLKIRHPFITSAEILLPTVVMLLLIAVRTQVDNTVHPPQPHIRK 60
           MATAWRQLKAMLRKNWLLKIRHPFITSAEILLPTVVMLLLIAVRTQVDNTVHPPQPHIRK
Sbjct: 1   MATAWRQLKAMLRKNWLLKIRHPFITSAEILLPTVVMLLLIAVRTQVDNTVHPPQPHIRK 60

Query: 61  GMFVEVGKGISPSFQEVLQSLKKNEEYLAFAPDTVETKMMLRMMSIKFPLVEVVTKVYKD 120
           GMFVEVGKGISPSFQEVLQSLKKNEEYLAF PDTVETKMML MMSIKFPLVEVVTKVYKD
Sbjct: 61  GMFVEVGKGISPSFQEVLQSLKKNEEYLAFVPDTVETKMMLHMMSIKFPLVEVVTKVYKD 120

Query: 121 EEELESYIRSDLYGNCNVVE 140
           EEELESYIRSDLYGNCNVVE
Sbjct: 121 EEELESYIRSDLYGNCNVVE 140

[Close]

BLAST of Cp4.1LG10g11520 vs. NCBI nr
Match: XP_031740232.1 (ABC transporter A family member 1 isoform X2 [Cucumis sativus])

HSP 1 Score: 247 bits (631), Expect = 7.56e-73
Identity = 124/138 (89.86%), Postives = 131/138 (94.93%), Query Frame = 0


Query: 1   MATAWRQLKAMLRKNWLLKIRHPFITSAEILLPTVVMLLLIAVRTQVDNTVHPPQPHIRK 60
           M  AWRQLK MLRKNWLLKIRHPFITSAEILLPTVVMLLLIAVRTQVDNTVHPPQPHI+K
Sbjct: 1   MGPAWRQLKVMLRKNWLLKIRHPFITSAEILLPTVVMLLLIAVRTQVDNTVHPPQPHIQK 60

Query: 61  GMFVEVGKGISPSFQEVLQSLKKNEEYLAFAPDTVETKMMLRMMSIKFPLVEVVTKVYKD 120
           GMFVEVGKGISPSFQEVL SLKKN EYLAFAPDTVETK ML +MS+KFPL+EVVT+VYKD
Sbjct: 61  GMFVEVGKGISPSFQEVLVSLKKNGEYLAFAPDTVETKTMLHLMSLKFPLLEVVTRVYKD 120

Query: 121 EEELESYIRSDLYGNCNV 138
           E+ELE+YIRSDLYGNCNV
Sbjct: 121 EQELEAYIRSDLYGNCNV 138

[Close]

BLAST of Cp4.1LG10g11520 vs. ExPASy TrEMBL
Match: A0A6J1EKF6 (ABC transporter A family member 1 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111435475 PE=3 SV=1)

HSP 1 Score: 273 bits (699), Expect = 2.58e-82
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MATAWRQLKAMLRKNWLLKIRHPFITSAEILLPTVVMLLLIAVRTQVDNTVHPPQPHIRK 60
           MATAWRQLKAMLRKNWLLKIRHPFITSAEILLPTVVMLLLIAVRTQVDNTVHPPQPHIRK
Sbjct: 1   MATAWRQLKAMLRKNWLLKIRHPFITSAEILLPTVVMLLLIAVRTQVDNTVHPPQPHIRK 60

Query: 61  GMFVEVGKGISPSFQEVLQSLKKNEEYLAFAPDTVETKMMLRMMSIKFPLVEVVTKVYKD 120
           GMFVEVGKGISPSFQEVLQSLKKNEEYLAFAPDTVETKMMLRMMSIKFPLVEVVTKVYKD
Sbjct: 61  GMFVEVGKGISPSFQEVLQSLKKNEEYLAFAPDTVETKMMLRMMSIKFPLVEVVTKVYKD 120

Query: 121 EEELESYIRSDLYGNCNVVE 140
           EEELESYIRSDLYGNCNVVE
Sbjct: 121 EEELESYIRSDLYGNCNVVE 140

[Close]

BLAST of Cp4.1LG10g11520 vs. ExPASy TrEMBL
Match: A0A6J1HV62 (ABC transporter A family member 1 OS=Cucurbita maxima OX=3661 GN=LOC111467144 PE=3 SV=1)

HSP 1 Score: 270 bits (690), Expect = 4.20e-81
Identity = 138/140 (98.57%), Postives = 138/140 (98.57%), Query Frame = 0


Query: 1   MATAWRQLKAMLRKNWLLKIRHPFITSAEILLPTVVMLLLIAVRTQVDNTVHPPQPHIRK 60
           MATAWRQLKAMLRKNWLLKIRHPFITSAEILLPTVVMLLLIAVRTQVDNTVHPPQPHIRK
Sbjct: 1   MATAWRQLKAMLRKNWLLKIRHPFITSAEILLPTVVMLLLIAVRTQVDNTVHPPQPHIRK 60

Query: 61  GMFVEVGKGISPSFQEVLQSLKKNEEYLAFAPDTVETKMMLRMMSIKFPLVEVVTKVYKD 120
           GMFVEVGKGISPSFQEVLQSLKKNEEYLAF PDTVETKMML MMSIKFPLVEVVTKVYKD
Sbjct: 61  GMFVEVGKGISPSFQEVLQSLKKNEEYLAFVPDTVETKMMLHMMSIKFPLVEVVTKVYKD 120

Query: 121 EEELESYIRSDLYGNCNVVE 140
           EEELESYIRSDLYGNCNVVE
Sbjct: 121 EEELESYIRSDLYGNCNVVE 140

[Close]

BLAST of Cp4.1LG10g11520 vs. ExPASy TrEMBL
Match: A0A0A0KYE2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G172520 PE=4 SV=1)

HSP 1 Score: 247 bits (631), Expect = 7.94e-81
Identity = 124/138 (89.86%), Postives = 131/138 (94.93%), Query Frame = 0


Query: 1   MATAWRQLKAMLRKNWLLKIRHPFITSAEILLPTVVMLLLIAVRTQVDNTVHPPQPHIRK 60
           M  AWRQLK MLRKNWLLKIRHPFITSAEILLPTVVMLLLIAVRTQVDNTVHPPQPHI+K
Sbjct: 1   MGPAWRQLKVMLRKNWLLKIRHPFITSAEILLPTVVMLLLIAVRTQVDNTVHPPQPHIQK 60

Query: 61  GMFVEVGKGISPSFQEVLQSLKKNEEYLAFAPDTVETKMMLRMMSIKFPLVEVVTKVYKD 120
           GMFVEVGKGISPSFQEVL SLKKN EYLAFAPDTVETK ML +MS+KFPL+EVVT+VYKD
Sbjct: 61  GMFVEVGKGISPSFQEVLVSLKKNGEYLAFAPDTVETKTMLHLMSLKFPLLEVVTRVYKD 120

Query: 121 EEELESYIRSDLYGNCNV 138
           E+ELE+YIRSDLYGNCNV
Sbjct: 121 EQELEAYIRSDLYGNCNV 138

[Close]

BLAST of Cp4.1LG10g11520 vs. ExPASy TrEMBL
Match: A0A5D3CGH2 (ABC transporter A family member 1 isoform X7 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold73G00630 PE=3 SV=1)

HSP 1 Score: 245 bits (626), Expect = 7.71e-73
Identity = 123/138 (89.13%), Postives = 131/138 (94.93%), Query Frame = 0


Query: 1   MATAWRQLKAMLRKNWLLKIRHPFITSAEILLPTVVMLLLIAVRTQVDNTVHPPQPHIRK 60
           M  AWRQLK MLRKNWLLKIRHPFITSAEILLPTVVMLLLIAVRTQVDNTVHPPQPHI+K
Sbjct: 1   MRPAWRQLKVMLRKNWLLKIRHPFITSAEILLPTVVMLLLIAVRTQVDNTVHPPQPHIQK 60

Query: 61  GMFVEVGKGISPSFQEVLQSLKKNEEYLAFAPDTVETKMMLRMMSIKFPLVEVVTKVYKD 120
           GMFVEVGKGISPSFQEVL SL+KN EYLAFAPDTVETK ML +MS+KFPL+EVVT+VYKD
Sbjct: 61  GMFVEVGKGISPSFQEVLVSLQKNGEYLAFAPDTVETKTMLHLMSLKFPLLEVVTRVYKD 120

Query: 121 EEELESYIRSDLYGNCNV 138
           E+ELE+YIRSDLYGNCNV
Sbjct: 121 EQELEAYIRSDLYGNCNV 138

[Close]

BLAST of Cp4.1LG10g11520 vs. ExPASy TrEMBL
Match: A0A5A7UJN7 (ABC transporter A family member 1 isoform X7 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold697G00700 PE=3 SV=1)

HSP 1 Score: 244 bits (624), Expect = 3.14e-72
Identity = 122/138 (88.41%), Postives = 131/138 (94.93%), Query Frame = 0


Query: 1   MATAWRQLKAMLRKNWLLKIRHPFITSAEILLPTVVMLLLIAVRTQVDNTVHPPQPHIRK 60
           M  AWRQLK MLRKNWLLKIRHPFITSAEILLPTVVMLLLIAVRTQVDNTVHPPQPHI+K
Sbjct: 1   MRPAWRQLKVMLRKNWLLKIRHPFITSAEILLPTVVMLLLIAVRTQVDNTVHPPQPHIQK 60

Query: 61  GMFVEVGKGISPSFQEVLQSLKKNEEYLAFAPDTVETKMMLRMMSIKFPLVEVVTKVYKD 120
           GMFVEVGKGISPSFQEVL SL+KN EYLAFAPDTVETK ML +MS+KFP++EVVT+VYKD
Sbjct: 61  GMFVEVGKGISPSFQEVLVSLQKNGEYLAFAPDTVETKTMLHLMSLKFPILEVVTRVYKD 120

Query: 121 EEELESYIRSDLYGNCNV 138
           E+ELE+YIRSDLYGNCNV
Sbjct: 121 EQELEAYIRSDLYGNCNV 138

[Close]

BLAST of Cp4.1LG10g11520 vs. TAIR 10
Match: AT2G41700.1 (ATP-binding cassette A1 )

HSP 1 Score: 169.1 bits (427), Expect = 2.5e-42
Identity = 87/139 (62.59%), Postives = 108/139 (77.70%), Query Frame = 0


Query: 1   MATAWRQLKAMLRKNWLLKIRHPFITSAEILLPTVVMLLLIAVRTQVDNTVHPPQPHIRK 60
           M ++ RQ KAMLRKNWLLK RHPF+TSAEILLPT+VMLLLIAVRT+VD T+HP   +I K
Sbjct: 1   MGSSKRQFKAMLRKNWLLKTRHPFVTSAEILLPTIVMLLLIAVRTRVDTTIHPAHSNIDK 60

Query: 61  GMFVEVGKGISPSFQEVLQSLKKNEEYLAFAPDTVETKMMLRMMSIKFPLVEVVTKVYKD 120
              VEVGKG SPSF EVL+ L    ++LAFAPDT ET  M+ ++S+KFP + +VTK++KD
Sbjct: 61  DTVVEVGKGNSPSFPEVLKLLLAEGDFLAFAPDTDETNNMIDILSLKFPELRLVTKIFKD 120

Query: 121 EEELESYIRSDLYGNCNVV 140
           + ELE+YI S  YG C+ V
Sbjct: 121 DIELETYITSAHYGVCSEV 139

[Close]

BLAST of Cp4.1LG10g11520 vs. TAIR 10
Match: AT2G41700.2 (ATP-binding cassette A1 )

HSP 1 Score: 125.2 bits (313), Expect = 4.2e-29
Identity = 65/111 (58.56%), Postives = 84/111 (75.68%), Query Frame = 0


Query: 29  EILLPTVVMLLLIAVRTQVDNTVHPPQPHIRKGMFVEVGKGISPSFQEVLQSLKKNEEYL 88
           +ILLPT+VMLLLIAVRT+VD T+HP   +I K   VEVGKG SPSF EVL+ L    ++L
Sbjct: 23  QILLPTIVMLLLIAVRTRVDTTIHPAHSNIDKDTVVEVGKGNSPSFPEVLKLLLAEGDFL 82

Query: 89  AFAPDTVETKMMLRMMSIKFPLVEVVTKVYKDEEELESYIRSDLYGNCNVV 140
           AFAPDT ET  M+ ++S+KFP + +VTK++KD+ ELE+YI S  YG C+ V
Sbjct: 83  AFAPDTDETNNMIDILSLKFPELRLVTKIFKDDIELETYITSAHYGVCSEV 133

The following BLAST results are available for this feature:

BLAST of Cp4.1LG10g11520 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84M24	3.6e-41	62.59	ABC transporter A family member 1 OS=Arabidopsis thaliana OX=3702 GN=ABCA1 PE=2 ...	[more]

BLAST of Cp4.1LG10g11520 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023543867.1	5.33e-82	100.00	ABC transporter A family member 1 [Cucurbita pepo subsp. pepo]	[more]
KAG6603210.1	5.33e-82	100.00	ABC transporter A family member 1, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022928622.1	5.33e-82	100.00	ABC transporter A family member 1 isoform X1 [Cucurbita moschata]	[more]
XP_022967690.1	8.66e-81	98.57	ABC transporter A family member 1 [Cucurbita maxima] >XP_022967692.1 ABC transpo...	[more]
XP_031740232.1	7.56e-73	89.86	ABC transporter A family member 1 isoform X2 [Cucumis sativus]	[more]

BLAST of Cp4.1LG10g11520 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EKF6	2.58e-82	100.00	ABC transporter A family member 1 isoform X1 OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1HV62	4.20e-81	98.57	ABC transporter A family member 1 OS=Cucurbita maxima OX=3661 GN=LOC111467144 PE...	[more]
A0A0A0KYE2	7.94e-81	89.86	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G172520 PE=4 SV=1	[more]
A0A5D3CGH2	7.71e-73	89.13	ABC transporter A family member 1 isoform X7 OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A5A7UJN7	3.14e-72	88.41	ABC transporter A family member 1 isoform X7 OS=Cucumis melo var. makuwa OX=1194...	[more]

BLAST of Cp4.1LG10g11520 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G41700.1	2.5e-42	62.59	ATP-binding cassette A1	[more]
AT2G41700.2	4.2e-29	58.56	ATP-binding cassette A1	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG10g11520.1	Cp4.1LG10g11520.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0140359	ABC-type transporter activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016887	ATP hydrolysis activity