Cp4.1LG10g11220 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG10g11220
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description40S ribosomal protein S28
LocationCp4.1LG10: 7660080 .. 7662510 (-)
RNA-Seq ExpressionCp4.1LG10g11220
SyntenyCp4.1LG10g11220
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCGGTAGATGGTGGCGGATTGTTTTAGCATGACTAACGTCACTTTTGCTATCATTAAAAGCCCATGCCACACAAATTTAGAGCATGTTTAGGAGTGATTTTGGTTAAAATTACCTTTGTTGTATTCAACATCACTTCAAAACATGTCGTTGATCATTCAAAAGCATTTTAATGTTTGGTTTTAACTTCTGGACATGGACATACGGTCAATTTTGATTCTGAGTGTTTTGGAATGCTTTTGAATATGATACATTACTCCCAAATATTGCCTATTGGGTTTGGAAGTGATTTATGAATATTTTTGGGAAAATAATCTGAAGTTTTTGTGAGGAAACACTTTTGGAGCACTTTTGACCAAAATGATTATCAATGTACTACATAAAAGCAATCACCTTGGGTTGGCCAGTTAGTCACCTTTGAAAAAATAAACTTGTGCGTGTAAGCTATATTAATCACCTCGGCAACCAAAGATAGTAGAGTCGGACATATTTATTAAAAAGAACTTCAAAACCGAATACGATAGTGATTTTTCAATAAACACCATTACGAAAATAGTTATAATCAAGCTCAAATCAGTTTGTTTGAAAACACTTCAAAACACATCTATAAGGGGAGGGGTCATTAGTGGGACTTCATTCTAATTGTAAGATTCTTTCTTGTTTATTGGTTTGGTTGTGTAGGAATGGAATCACAGATCAAACATGCTCTGGTGGTGAAAGTAATGGGTAGAACTGGATCAAGAGGGCAGGTGACTCAAGTAAGAGTCAAGTTTCTTGATGATCAGAATCGTTACATTATGAGGAACGTCAAGGGACCAGTCAGGGAAGGCGATATTCTTACCCTACTCGAGTCCGAGAGGGAAGCTAGGAGGTTGCGTTGATGGAGAACGATTTCTGTTGCTGTCATCATATTGTTACCTCTGTTTTAAGTGTGGATTTCAGTGACTAGTTTGTTTCAAGACCCTTTGATGAGGTAATTTAATTGAGTTTTGATGCTACCAAGTTTTTCTCATGCAAAATTGTGGATTTTTGCTCATTGCTTAATGGAAGGGGATGCTTGTTTTTTGCGTTATTTTGGTCATGCATCTTGTGTTTGAGTTGTCTGCTAAGTTTTAAGGTCTTCGAAGCAAACCACTTTAGTTTCCTAGTTTTTGAACAAGAAAAAAAAAAGTACAATTTATATTATAGTTATAATATAAAATGGCATGCTGTCGAATTGAGATGCTCTAGTATTGTTTCCTAGGAGTAGCGTAGCGTGTCTACTGATTTCACTGTAACGACTTTCTCGAAATCAGTTGGAAGCTTATCAACCTGATTAATGCATCGTCACTACTTTGGATTTCATTATGTCATATCATTCATGTTGGCAAGATATCTATGCATCCCTCAATTTGATATTACTTTGCTGAATGGCAAAGTACCATATTAGCTTAAACTATACAAAAGAACTCTAAGCTCTAAGCCTAGACTTATTATTATTATTATTATTTATTTTTTTTGTACATCACCGCATCAACCTCATACTTTATTTTTTCAAGGATAGTTTTTGGAGAAGAGAGTTGTAACAACTTAGTTGGTTTGGTACATATTGTCAGTTTAATGGTTTTAAAACGAGTCTACTAGGGATAGGTTTTCTCATCTTATAAAGAATGATTTGTTTCCCTTCCATTCGTGATGGGACCTCATAATCCACCCCTTGGGGACTAGGGGGCCAGTGTCGTTGTGCTACTTGGTGTTTGGCTTTGATACCATTTGTAATAGTCCAAGCCTACTTGGTGTTTGGCTTTGATACCATTTGTAATAGTACTTGGTGTTTGGCTTTGATACCATTTGTAATAGTACTTGGTGTTTGGCTTTGATACCATTTGTAATAGTCCAAGCCTACTTGGTGTTTAGCTTTGATACCATTTGTAATAGTCCAAGCCTATTGTTAGCAATTTGTGCCACTCGGTGTCTGGCTTTGATACCATTTGTAATAGCCCAAGTCCATTGTTAATAAATATTGTTCGCTTTGTCGTTGTCACTCTTGGAGCTTTAAAAGTGTCTACTAGGGAGAGGTTTTCAAACCTTAAAGCTCAACGCGTCTACTAGGAGGAGGTTTACAAACTTTAAGGAATGCTTCGTTTCGCTCAACGCGTCTACTAGGAAGAGGTTTTCACACTCTTAAGGAATGTTTCGTTCCCCTCTCCTATTTTCCTACCGATTATGTCTCACGGTTTTTAAACAGGTTATTAGGGAGAAGTTTTCTTGCTCACCGATATAGGACCTCAAAAGTTGTTTATTTTCTTAGTAAAGTTTTGGAGATTTGAATCTCAACTATTTGATCATACTCAATTGTTACAAGACAATTGTGTATAGGATTTGATTTTATTGCCTTCTTTTTTTGTCTCTTTTGCTCAAGTATGACCAAATTGGAAATAAATATATAA

mRNA sequence

ATGAGCGGAATGGAATCACAGATCAAACATGCTCTGGTGGTGAAAGTAATGGGTAGAACTGGATCAAGAGGGCAGGTGACTCAAGTAAGAGTCAAGTTTCTTGATGATCAGAATCGTTACATTATGAGGAACGTCAAGGGACCAGTCAGGGAAGGCGATATTCTTACCCTACTCGAGTCCGAGAGGGAAGCTAGGAGTATGACCAAATTGGAAATAAATATATAA

Coding sequence (CDS)

ATGAGCGGAATGGAATCACAGATCAAACATGCTCTGGTGGTGAAAGTAATGGGTAGAACTGGATCAAGAGGGCAGGTGACTCAAGTAAGAGTCAAGTTTCTTGATGATCAGAATCGTTACATTATGAGGAACGTCAAGGGACCAGTCAGGGAAGGCGATATTCTTACCCTACTCGAGTCCGAGAGGGAAGCTAGGAGTATGACCAAATTGGAAATAAATATATAA

Protein sequence

MSGMESQIKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARSMTKLEINI
Homology
[Close]
BLAST of Cp4.1LG10g11220 vs. ExPASy Swiss-Prot
Match: P46302 (40S ribosomal protein S28 OS=Zea mays OX=4577 GN=RPS28 PE=3 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 3.0e-23
Identity = 55/64 (85.94%), Postives = 60/64 (93.75%), Query Frame = 0 

Query: 4  MESQIKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 63
          M++Q+K A+VVKVMGRTGSRGQVTQVRVKFLDDQNR IMRNVKGPV EGDILTLLESERE
Sbjct: 1  MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVCEGDILTLLESERE 60

Query: 64 ARSM 68
          AR +
Sbjct: 61 ARRL 64

[Close]
BLAST of Cp4.1LG10g11220 vs. ExPASy Swiss-Prot
Match: Q9SR73 (40S ribosomal protein S28-1 OS=Arabidopsis thaliana OX=3702 GN=RPS28A PE=3 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 5.2e-23
Identity = 56/64 (87.50%), Postives = 60/64 (93.75%), Query Frame = 0 

Query: 4  MESQIKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 63
          M+SQIKHA+VVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGPVREGDILTLLESERE
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRYIMRNVKGPVREGDILTLLESERE 60

Query: 64 ARSM 68
          AR +
Sbjct: 61 ARRL 63

[Close]
BLAST of Cp4.1LG10g11220 vs. ExPASy Swiss-Prot
Match: P34789 (40S ribosomal protein S28-2 OS=Arabidopsis thaliana OX=3702 GN=RPS28C PE=3 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 2.0e-22
Identity = 54/64 (84.38%), Postives = 60/64 (93.75%), Query Frame = 0 

Query: 4  MESQIKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 63
          M+SQIKHA+VVKVMGRTGSRGQVTQVRVKF  D +R+IMRNVKGPVREGD+LTLLESERE
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRFIMRNVKGPVREGDVLTLLESERE 60

Query: 64 ARSM 68
          AR +
Sbjct: 61 ARRL 63

[Close]
BLAST of Cp4.1LG10g11220 vs. ExPASy Swiss-Prot
Match: Q6PBK3 (40S ribosomal protein S28 OS=Danio rerio OX=7955 GN=rps28 PE=3 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.3e-18
Identity = 46/60 (76.67%), Postives = 53/60 (88.33%), Query Frame = 0 

Query: 8  IKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARSM 67
          IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+LTLLESEREAR +
Sbjct: 9  IKLARVTKVLGRTGSQGQCTQVRVEFMDDSNRSIIRNVKGPVREGDVLTLLESEREARRL 68

[Close]
BLAST of Cp4.1LG10g11220 vs. ExPASy Swiss-Prot
Match: Q90YP3 (40S ribosomal protein S28 OS=Ictalurus punctatus OX=7998 GN=rps28 PE=3 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.3e-18
Identity = 46/60 (76.67%), Postives = 53/60 (88.33%), Query Frame = 0 

Query: 8  IKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARSM 67
          IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+LTLLESEREAR +
Sbjct: 9  IKLARVTKVLGRTGSQGQCTQVRVEFMDDSNRSIIRNVKGPVREGDVLTLLESEREARRL 68

[Close]
BLAST of Cp4.1LG10g11220 vs. NCBI nr
Match: KAG6595421.1 (40S ribosomal protein S28, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 127 bits (320), Expect = 3.32e-36
Identity = 63/67 (94.03%), Postives = 66/67 (98.51%), Query Frame = 0 

Query: 1   MSGMESQIKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLES 60
           +SGMESQIKHA+VVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLES
Sbjct: 45  LSGMESQIKHAMVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLES 104

Query: 61  EREARSM 67
           EREAR +
Sbjct: 105 EREARRL 111

[Close]
BLAST of Cp4.1LG10g11220 vs. NCBI nr
Match: KAG6603304.1 (40S ribosomal protein S28, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 127 bits (320), Expect = 3.32e-36
Identity = 64/65 (98.46%), Postives = 65/65 (100.00%), Query Frame = 0 

Query: 2  SGMESQIKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESE 61
          +GMESQIKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESE
Sbjct: 27 TGMESQIKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESE 86

Query: 62 REARS 66
          REARS
Sbjct: 87 REARS 91

[Close]
BLAST of Cp4.1LG10g11220 vs. NCBI nr
Match: KAG7033582.1 (40S ribosomal protein S28, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 128 bits (321), Expect = 4.12e-36
Identity = 64/65 (98.46%), Postives = 65/65 (100.00%), Query Frame = 0 

Query: 1   MSGMESQIKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLES 60
           +SGMESQIKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLES
Sbjct: 67  LSGMESQIKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLES 126

Query: 61  EREAR 65
           EREAR
Sbjct: 127 EREAR 131

[Close]
BLAST of Cp4.1LG10g11220 vs. NCBI nr
Match: KAG7023246.1 (40S ribosomal protein S28, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 125 bits (314), Expect = 1.85e-35
Identity = 62/66 (93.94%), Postives = 65/66 (98.48%), Query Frame = 0 

Query: 2  SGMESQIKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESE 61
          +GMESQIKHA+VVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESE
Sbjct: 33 AGMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESE 92

Query: 62 REARSM 67
          REAR +
Sbjct: 93 REARRL 98

[Close]
BLAST of Cp4.1LG10g11220 vs. NCBI nr
Match: XP_022922062.1 (40S ribosomal protein S28-1-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 125 bits (314), Expect = 2.28e-35
Identity = 62/66 (93.94%), Postives = 65/66 (98.48%), Query Frame = 0 

Query: 2   SGMESQIKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESE 61
           +GMESQIKHA+VVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESE
Sbjct: 40  AGMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESE 99

Query: 62  REARSM 67
           REAR +
Sbjct: 100 REARRL 105

[Close]
BLAST of Cp4.1LG10g11220 vs. ExPASy TrEMBL
Match: A0A6J1E226 (40S ribosomal protein S28-1-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111430126 PE=3 SV=1)

HSP 1 Score: 125 bits (314), Expect = 1.10e-35
Identity = 62/66 (93.94%), Postives = 65/66 (98.48%), Query Frame = 0 

Query: 2   SGMESQIKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESE 61
           +GMESQIKHA+VVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESE
Sbjct: 40  AGMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESE 99

Query: 62  REARSM 67
           REAR +
Sbjct: 100 REARRL 105

[Close]
BLAST of Cp4.1LG10g11220 vs. ExPASy TrEMBL
Match: A0A6J1E336 (40S ribosomal protein S28-1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111430126 PE=3 SV=1)

HSP 1 Score: 125 bits (314), Expect = 1.20e-35
Identity = 62/66 (93.94%), Postives = 65/66 (98.48%), Query Frame = 0 

Query: 2   SGMESQIKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESE 61
           +GMESQIKHA+VVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESE
Sbjct: 43  AGMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESE 102

Query: 62  REARSM 67
           REAR +
Sbjct: 103 REARRL 108

[Close]
BLAST of Cp4.1LG10g11220 vs. ExPASy TrEMBL
Match: A0A6J1EKH1 (40S ribosomal protein S28-1-like OS=Cucurbita moschata OX=3662 GN=LOC111435484 PE=3 SV=1)

HSP 1 Score: 124 bits (310), Expect = 1.38e-35
Identity = 62/64 (96.88%), Postives = 63/64 (98.44%), Query Frame = 0 

Query: 4  MESQIKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 63
          MESQIKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE
Sbjct: 1  MESQIKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60

Query: 64 ARSM 67
          AR +
Sbjct: 61 ARRL 64

[Close]
BLAST of Cp4.1LG10g11220 vs. ExPASy TrEMBL
Match: A0A6J1HTG7 (40S ribosomal protein S28-1 OS=Cucurbita maxima OX=3661 GN=LOC111467300 PE=3 SV=1)

HSP 1 Score: 122 bits (307), Expect = 3.95e-35
Identity = 61/64 (95.31%), Postives = 63/64 (98.44%), Query Frame = 0 

Query: 4  MESQIKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 63
          MESQIKHA+VVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE
Sbjct: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60

Query: 64 ARSM 67
          AR +
Sbjct: 61 ARRL 64

[Close]
BLAST of Cp4.1LG10g11220 vs. ExPASy TrEMBL
Match: A0A0A0LPR2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G021920 PE=3 SV=1)

HSP 1 Score: 122 bits (307), Expect = 3.95e-35
Identity = 61/64 (95.31%), Postives = 63/64 (98.44%), Query Frame = 0 

Query: 4  MESQIKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 63
          MESQIKHA+VVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE
Sbjct: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60

Query: 64 ARSM 67
          AR +
Sbjct: 61 ARRL 64

[Close]
BLAST of Cp4.1LG10g11220 vs. TAIR 10
Match: AT3G10090.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 107.8 bits (268), Expect = 3.7e-24
Identity = 56/64 (87.50%), Postives = 60/64 (93.75%), Query Frame = 0 

Query: 4  MESQIKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 63
          M+SQIKHA+VVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGPVREGDILTLLESERE
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRYIMRNVKGPVREGDILTLLESERE 60

Query: 64 ARSM 68
          AR +
Sbjct: 61 ARRL 63

[Close]
BLAST of Cp4.1LG10g11220 vs. TAIR 10
Match: AT5G03850.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 107.8 bits (268), Expect = 3.7e-24
Identity = 56/64 (87.50%), Postives = 60/64 (93.75%), Query Frame = 0 

Query: 4  MESQIKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 63
          M+SQIKHA+VVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGPVREGDILTLLESERE
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRYIMRNVKGPVREGDILTLLESERE 60

Query: 64 ARSM 68
          AR +
Sbjct: 61 ARRL 63

[Close]
BLAST of Cp4.1LG10g11220 vs. TAIR 10
Match: AT5G64140.1 (ribosomal protein S28 )

HSP 1 Score: 105.9 bits (263), Expect = 1.4e-23
Identity = 54/64 (84.38%), Postives = 60/64 (93.75%), Query Frame = 0 

Query: 4  MESQIKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 63
          M+SQIKHA+VVKVMGRTGSRGQVTQVRVKF  D +R+IMRNVKGPVREGD+LTLLESERE
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRFIMRNVKGPVREGDVLTLLESERE 60

Query: 64 ARSM 68
          AR +
Sbjct: 61 ARRL 63

The following BLAST results are available for this feature:
BLAST of Cp4.1LG10g11220 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P463023.0e-2385.9440S ribosomal protein S28 OS=Zea mays OX=4577 GN=RPS28 PE=3 SV=1[more]
Q9SR735.2e-2387.5040S ribosomal protein S28-1 OS=Arabidopsis thaliana OX=3702 GN=RPS28A PE=3 SV=1[more]
P347892.0e-2284.3840S ribosomal protein S28-2 OS=Arabidopsis thaliana OX=3702 GN=RPS28C PE=3 SV=1[more]
Q6PBK31.3e-1876.6740S ribosomal protein S28 OS=Danio rerio OX=7955 GN=rps28 PE=3 SV=1[more]
Q90YP31.3e-1876.6740S ribosomal protein S28 OS=Ictalurus punctatus OX=7998 GN=rps28 PE=3 SV=1[more]
BLAST of Cp4.1LG10g11220 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6595421.13.32e-3694.0340S ribosomal protein S28, partial [Cucurbita argyrosperma subsp. sororia][more]
KAG6603304.13.32e-3698.4640S ribosomal protein S28, partial [Cucurbita argyrosperma subsp. sororia][more]
KAG7033582.14.12e-3698.4640S ribosomal protein S28, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG7023246.11.85e-3593.9440S ribosomal protein S28, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_022922062.12.28e-3593.9440S ribosomal protein S28-1-like isoform X2 [Cucurbita moschata][more]
BLAST of Cp4.1LG10g11220 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1E2261.10e-3593.9440S ribosomal protein S28-1-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC... [more]
A0A6J1E3361.20e-3593.9440S ribosomal protein S28-1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC... [more]
A0A6J1EKH11.38e-3596.8840S ribosomal protein S28-1-like OS=Cucurbita moschata OX=3662 GN=LOC111435484 P... [more]
A0A6J1HTG73.95e-3595.3140S ribosomal protein S28-1 OS=Cucurbita maxima OX=3661 GN=LOC111467300 PE=3 SV=... [more]
A0A0A0LPR23.95e-3595.31Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G021920 PE=3 SV=1[more]
BLAST of Cp4.1LG10g11220 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G10090.13.7e-2487.50Nucleic acid-binding, OB-fold-like protein [more]
AT5G03850.13.7e-2487.50Nucleic acid-binding, OB-fold-like protein [more]
AT5G64140.11.4e-2384.38ribosomal protein S28 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.40.50.140coord: 1..68
e-value: 5.7E-35
score: 121.0
NoneNo IPR availablePANTHERPTHR10769:SF340S RIBOSOMAL PROTEIN S28coord: 4..66
IPR000289Ribosomal protein S28ePFAMPF01200Ribosomal_S28ecoord: 7..66
e-value: 1.6E-31
score: 108.0
IPR000289Ribosomal protein S28ePANTHERPTHR1076940S RIBOSOMAL PROTEIN S28coord: 4..66
IPR000289Ribosomal protein S28eHAMAPMF_00292Ribosomal_S28ecoord: 4..68
score: 20.78771
IPR000289Ribosomal protein S28eCDDcd04457S1_S28Ecoord: 9..68
e-value: 4.75279E-30
score: 98.4763
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 4..68

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG10g11220.1Cp4.1LG10g11220.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome