Cp4.1LG10g11090 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG10g11090
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	sigma factor binding protein 2, chloroplastic-like
Location	Cp4.1LG10: 7510307 .. 7511283 (-)
RNA-Seq Expression	Cp4.1LG10g11090
Synteny	Cp4.1LG10g11090

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGAGAAAAAACCCTTCTTTTTCCCTTCCAAAATGGACGGCAGCGCCGGCACCGGCACCGGCACCGGCACCGGAAACAGCCACAGAGTCCTCGACGGCGTCCACCGGCGAAAGGCCACAAAGAAAACCAAACAACCCAACAAAAACAAACCCATCAAAGTCGTGTACATATCCAACCCCATGAAGGTTCAAATCAGCGCATCTGGATTCATGGCTTTGGTCCAACAACTCACCGGCCAAGACGCCGACTTTCCCGACCCCTCTAACTTCCCACCCGCCGCCGTACGCGACGCCGTCGCCTCCCCCGACATCCACCACACCACGGCGGATGCTAATCTGATGATGAATAATAACAACCCTTCACTTACTGTTGAGATTCCAATGGAGGATGACCCCTTTCTTGGCTCTTTCTATGATGACATTGAAGATCTGATTTTCCCCCCTCCGGTGATCGGAAACTACCCTGCGCTGCTTCCAGCGGCGGCGGCAACGGCGGTTTTATATGAATCTTATGCAAGGTGAAAAAACATGTTGGCGAAAATCTTTAAATTATCTCTTTAATTCTTGCATATTTTGTATATGAAATTAGAGAATAACAACTATTAATTATCCTATATTATGTATGTTTTTATATTTAATTTCTAAATTTCAATTCTAAACTCGTAGTTATATCAATTTAAACTCTAATTTCGCTAAAAAATTAGGAAAAAAAATTGAATTATGAAGTTCATAGTGCAAGTTGATATTTAAAATTTTATAAAATATTAAAAAAATATATTTCGATTTTGATTTTTCATGAAATTAATGGACCCAAACTGTACCTTTTTTTGTTTGGTTAGGGTAATTTGAGCAAGTTGGGGAAAGGATCGAAGGGAAAGGGAATTGGGTGAGCCATGGAATATGATGTAACTCAACATCACAACCAAACAAAACCCTTAAAAGGTCAATATTTAAAACTTTATGTTATTTAGATACAAA

mRNA sequence

AAGAGAAAAAACCCTTCTTTTTCCCTTCCAAAATGGACGGCAGCGCCGGCACCGGCACCGGCACCGGCACCGGAAACAGCCACAGAGTCCTCGACGGCGTCCACCGGCGAAAGGCCACAAAGAAAACCAAACAACCCAACAAAAACAAACCCATCAAAGTCGTGTACATATCCAACCCCATGAAGGTTCAAATCAGCGCATCTGGATTCATGGCTTTGGTCCAACAACTCACCGGCCAAGACGCCGACTTTCCCGACCCCTCTAACTTCCCACCCGCCGCCGTACGCGACGCCGTCGCCTCCCCCGACATCCACCACACCACGGCGGATGCTAATCTGATGATGAATAATAACAACCCTTCACTTACTGTTGAGATTCCAATGGAGGATGACCCCTTTCTTGGCTCTTTCTATGATGACATTGAAGATCTGATTTTCCCCCCTCCGGTGATCGGAAACTACCCTGCGCTGCTTCCAGCGGCGGCGGCAACGGCGGTTTTATATGAATCTTATGCAAGATACAAA

Coding sequence (CDS)

ATGGACGGCAGCGCCGGCACCGGCACCGGCACCGGCACCGGAAACAGCCACAGAGTCCTCGACGGCGTCCACCGGCGAAAGGCCACAAAGAAAACCAAACAACCCAACAAAAACAAACCCATCAAAGTCGTGTACATATCCAACCCCATGAAGGTTCAAATCAGCGCATCTGGATTCATGGCTTTGGTCCAACAACTCACCGGCCAAGACGCCGACTTTCCCGACCCCTCTAACTTCCCACCCGCCGCCGTACGCGACGCCGTCGCCTCCCCCGACATCCACCACACCACGGCGGATGCTAATCTGATGATGAATAATAACAACCCTTCACTTACTGTTGAGATTCCAATGGAGGATGACCCCTTTCTTGGCTCTTTCTATGATGACATTGAAGATCTGATTTTCCCCCCTCCGGTGATCGGAAACTACCCTGCGCTGCTTCCAGCGGCGGCGGCAACGGCGGTTTTATATGAATCTTATGCAAGATACAAA

Protein sequence

MDGSAGTGTGTGTGNSHRVLDGVHRRKATKKTKQPNKNKPIKVVYISNPMKVQISASGFMALVQQLTGQDADFPDPSNFPPAAVRDAVASPDIHHTTADANLMMNNNNPSLTVEIPMEDDPFLGSFYDDIEDLIFPPPVIGNYPALLPAAAATAVLYESYARYK

Homology

[Close]

BLAST of Cp4.1LG10g11090 vs. ExPASy Swiss-Prot
Match: Q9LDH1 (Sigma factor binding protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SIB1 PE=1 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 3.0e-07
Identity = 30/49 (61.22%), Postives = 35/49 (71.43%), Query Frame = 0


Query: 23 VHRRKATKKTKQPNKNKPIKVVYISNPMKVQISASGFMALVQQLTGQDA 72
          V R+   +K K  + NKPIKV YISNPM+VQ  AS F  LVQ+LTGQDA
Sbjct: 22 VSRKSPKQKKKTTSTNKPIKVRYISNPMRVQTCASKFRELVQELTGQDA 70

[Close]

BLAST of Cp4.1LG10g11090 vs. ExPASy Swiss-Prot
Match: O80669 (Sigma factor binding protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SIB2 PE=1 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 3.7e-05
Identity = 29/52 (55.77%), Postives = 35/52 (67.31%), Query Frame = 0


Query: 30 KKTKQPNKNKPIKVVYISNPMKVQISASGFMALVQQLTGQD-ADF-PDPSNF 80
          +K K    +KPIKV YISNPM+V+   S F  LVQ+LTGQD AD  P P+ F
Sbjct: 26 QKRKSTTTHKPIKVRYISNPMRVETCPSKFRELVQELTGQDAADLPPSPTTF 77

[Close]

BLAST of Cp4.1LG10g11090 vs. NCBI nr
Match: XP_023544826.1 (uncharacterized protein LOC111804304 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 322 bits (825), Expect = 7.54e-111
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 0


Query: 1   MDGSAGTGTGTGTGNSHRVLDGVHRRKATKKTKQPNKNKPIKVVYISNPMKVQISASGFM 60
           MDGSAGTGTGTGTGNSHRVLDGVHRRKATKKTKQPNKNKPIKVVYISNPMKVQISASGFM
Sbjct: 1   MDGSAGTGTGTGTGNSHRVLDGVHRRKATKKTKQPNKNKPIKVVYISNPMKVQISASGFM 60

Query: 61  ALVQQLTGQDADFPDPSNFPPAAVRDAVASPDIHHTTADANLMMNNNNPSLTVEIPMEDD 120
           ALVQQLTGQDADFPDPSNFPPAAVRDAVASPDIHHTTADANLMMNNNNPSLTVEIPMEDD
Sbjct: 61  ALVQQLTGQDADFPDPSNFPPAAVRDAVASPDIHHTTADANLMMNNNNPSLTVEIPMEDD 120

Query: 121 PFLGSFYDDIEDLIFPPPVIGNYPALLPAAAATAVLYESYAR 162
           PFLGSFYDDIEDLIFPPPVIGNYPALLPAAAATAVLYESYAR
Sbjct: 121 PFLGSFYDDIEDLIFPPPVIGNYPALLPAAAATAVLYESYAR 162

[Close]

BLAST of Cp4.1LG10g11090 vs. NCBI nr
Match: XP_023521198.1 (sigma factor binding protein 2, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 292 bits (747), Expect = 5.14e-99
Identity = 153/163 (93.87%), Postives = 155/163 (95.09%), Query Frame = 0


Query: 1   MDGSAGTGTGTGTGNSHRVLDGVHRRKATKKTKQPNKNKPIKVVYISNPMKVQISASGFM 60
           MDGS    TGTGTGNSHR+LDGVHRRK TKKTKQPNKNKPIKVVYISNPMKVQISASGFM
Sbjct: 1   MDGS----TGTGTGNSHRLLDGVHRRKPTKKTKQPNKNKPIKVVYISNPMKVQISASGFM 60

Query: 61  ALVQQLTGQDADFPDPSNFPPAA-VRDAVASPDIHHTTADANLMMNNNNPSLTVEIPMED 120
           ALVQQLTGQDADFPDPSNFPPAA VRDA ASPDIHHTTADA+LMM NNNPSLTVEIPMED
Sbjct: 61  ALVQQLTGQDADFPDPSNFPPAAAVRDAAASPDIHHTTADADLMM-NNNPSLTVEIPMED 120

Query: 121 DPFLGSFYDDIEDLIFPPPVIGNYPALLPAAAATAVLYESYAR 162
           DPFLGSFYDDIEDLIFPPPVIGNYPALLPAAAATAVLYESYAR
Sbjct: 121 DPFLGSFYDDIEDLIFPPPVIGNYPALLPAAAATAVLYESYAR 158

[Close]

BLAST of Cp4.1LG10g11090 vs. NCBI nr
Match: KAG6603312.1 (Sigma factor binding protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 291 bits (745), Expect = 9.35e-99
Identity = 150/162 (92.59%), Postives = 154/162 (95.06%), Query Frame = 0


Query: 1   MDGSAGTGTGTGTGNSHRVLDGVHRRKATKKTKQPNKNKPIKVVYISNPMKVQISASGFM 60
           MDGSA    GTGTGNSHR+LDGVHRRK TKKTKQPNKNKPIKVVYISNPMKVQISASGFM
Sbjct: 1   MDGSA----GTGTGNSHRLLDGVHRRKPTKKTKQPNKNKPIKVVYISNPMKVQISASGFM 60

Query: 61  ALVQQLTGQDADFPDPSNFPPAAVRDAVASPDIHHTTADANLMMNNNNPSLTVEIPMEDD 120
           ALVQQLTGQDADFPDPSNFPPAAVRDA A PDIH+TTADANLM NNNNPSLTVEIPMEDD
Sbjct: 61  ALVQQLTGQDADFPDPSNFPPAAVRDAAAFPDIHNTTADANLM-NNNNPSLTVEIPMEDD 120

Query: 121 PFLGSFYDDIEDLIFPPPVIGNYPALLPAAAATAVLYESYAR 162
           PFLGSFYDDI+DLIFPPPVIGNYPAL+PAAAATAVLYESYAR
Sbjct: 121 PFLGSFYDDIDDLIFPPPVIGNYPALIPAAAATAVLYESYAR 157

[Close]

BLAST of Cp4.1LG10g11090 vs. NCBI nr
Match: XP_022932879.1 (sigma factor binding protein 2, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 290 bits (741), Expect = 4.08e-98
Identity = 150/162 (92.59%), Postives = 153/162 (94.44%), Query Frame = 0


Query: 1   MDGSAGTGTGTGTGNSHRVLDGVHRRKATKKTKQPNKNKPIKVVYISNPMKVQISASGFM 60
           MDGSA    GTGTGNSHR+LDGVHRRK TKKTKQPNKNKPIKVVYISNPMKVQISASGFM
Sbjct: 1   MDGSA----GTGTGNSHRLLDGVHRRKPTKKTKQPNKNKPIKVVYISNPMKVQISASGFM 60

Query: 61  ALVQQLTGQDADFPDPSNFPPAAVRDAVASPDIHHTTADANLMMNNNNPSLTVEIPMEDD 120
           ALVQQLTGQDADFPDPS FPPAAVRDA A PDIH+TTADANLM NNNNPSLTVEIPMEDD
Sbjct: 61  ALVQQLTGQDADFPDPSTFPPAAVRDAAAFPDIHNTTADANLM-NNNNPSLTVEIPMEDD 120

Query: 121 PFLGSFYDDIEDLIFPPPVIGNYPALLPAAAATAVLYESYAR 162
           PFLGSFYDDI+DLIFPPPVIGNYPALLPAAAATAVLYESYAR
Sbjct: 121 PFLGSFYDDIDDLIFPPPVIGNYPALLPAAAATAVLYESYAR 157

[Close]

BLAST of Cp4.1LG10g11090 vs. NCBI nr
Match: XP_022967903.1 (sigma factor binding protein 2, chloroplastic-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 265 bits (676), Expect = 3.53e-88
Identity = 141/162 (87.04%), Postives = 145/162 (89.51%), Query Frame = 0


Query: 1   MDGSAGTGTGTGTGNSHRVLDGVHRRKATKKTKQPNKNKPIKVVYISNPMKVQISASGFM 60
           MDGSA    GTGTGNSHR+LDGVHRRK TKKTKQPNKNKPIKVVYISNPMKVQISASGFM
Sbjct: 1   MDGSA----GTGTGNSHRLLDGVHRRKPTKKTKQPNKNKPIKVVYISNPMKVQISASGFM 60

Query: 61  ALVQQLTGQDADFPDPSNFPPAAVRDAVASPDIHHTTADANLMMNNNNPSLTVEIPMEDD 120
           ALVQQLTGQDA+FPD S FPPAA     A PDIH TTADANLMM NNNPSLTVE PMEDD
Sbjct: 61  ALVQQLTGQDAEFPDSSKFPPAA-----AFPDIHDTTADANLMM-NNNPSLTVEPPMEDD 120

Query: 121 PFLGSFYDDIEDLIFPPPVIGNYPALLPAAAATAVLYESYAR 162
           P LG+FYDDI+DLIFPPPVIGNYPALLPAAAATAVLYESYAR
Sbjct: 121 PLLGTFYDDIDDLIFPPPVIGNYPALLPAAAATAVLYESYAR 152

[Close]

BLAST of Cp4.1LG10g11090 vs. ExPASy TrEMBL
Match: A0A6J1EY87 (sigma factor binding protein 2, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111439409 PE=4 SV=1)

HSP 1 Score: 290 bits (741), Expect = 1.98e-98
Identity = 150/162 (92.59%), Postives = 153/162 (94.44%), Query Frame = 0


Query: 1   MDGSAGTGTGTGTGNSHRVLDGVHRRKATKKTKQPNKNKPIKVVYISNPMKVQISASGFM 60
           MDGSA    GTGTGNSHR+LDGVHRRK TKKTKQPNKNKPIKVVYISNPMKVQISASGFM
Sbjct: 1   MDGSA----GTGTGNSHRLLDGVHRRKPTKKTKQPNKNKPIKVVYISNPMKVQISASGFM 60

Query: 61  ALVQQLTGQDADFPDPSNFPPAAVRDAVASPDIHHTTADANLMMNNNNPSLTVEIPMEDD 120
           ALVQQLTGQDADFPDPS FPPAAVRDA A PDIH+TTADANLM NNNNPSLTVEIPMEDD
Sbjct: 61  ALVQQLTGQDADFPDPSTFPPAAVRDAAAFPDIHNTTADANLM-NNNNPSLTVEIPMEDD 120

Query: 121 PFLGSFYDDIEDLIFPPPVIGNYPALLPAAAATAVLYESYAR 162
           PFLGSFYDDI+DLIFPPPVIGNYPALLPAAAATAVLYESYAR
Sbjct: 121 PFLGSFYDDIDDLIFPPPVIGNYPALLPAAAATAVLYESYAR 157

[Close]

BLAST of Cp4.1LG10g11090 vs. ExPASy TrEMBL
Match: A0A6J1HWH9 (sigma factor binding protein 2, chloroplastic-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111467277 PE=4 SV=1)

HSP 1 Score: 265 bits (676), Expect = 1.71e-88
Identity = 141/162 (87.04%), Postives = 145/162 (89.51%), Query Frame = 0


Query: 1   MDGSAGTGTGTGTGNSHRVLDGVHRRKATKKTKQPNKNKPIKVVYISNPMKVQISASGFM 60
           MDGSA    GTGTGNSHR+LDGVHRRK TKKTKQPNKNKPIKVVYISNPMKVQISASGFM
Sbjct: 1   MDGSA----GTGTGNSHRLLDGVHRRKPTKKTKQPNKNKPIKVVYISNPMKVQISASGFM 60

Query: 61  ALVQQLTGQDADFPDPSNFPPAAVRDAVASPDIHHTTADANLMMNNNNPSLTVEIPMEDD 120
           ALVQQLTGQDA+FPD S FPPAA     A PDIH TTADANLMM NNNPSLTVE PMEDD
Sbjct: 61  ALVQQLTGQDAEFPDSSKFPPAA-----AFPDIHDTTADANLMM-NNNPSLTVEPPMEDD 120

Query: 121 PFLGSFYDDIEDLIFPPPVIGNYPALLPAAAATAVLYESYAR 162
           P LG+FYDDI+DLIFPPPVIGNYPALLPAAAATAVLYESYAR
Sbjct: 121 PLLGTFYDDIDDLIFPPPVIGNYPALLPAAAATAVLYESYAR 152

[Close]

BLAST of Cp4.1LG10g11090 vs. ExPASy TrEMBL
Match: A0A6J1HS32 (sigma factor binding protein 2, chloroplastic-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111467277 PE=4 SV=1)

HSP 1 Score: 265 bits (676), Expect = 3.87e-88
Identity = 141/162 (87.04%), Postives = 145/162 (89.51%), Query Frame = 0


Query: 1   MDGSAGTGTGTGTGNSHRVLDGVHRRKATKKTKQPNKNKPIKVVYISNPMKVQISASGFM 60
           MDGSA    GTGTGNSHR+LDGVHRRK TKKTKQPNKNKPIKVVYISNPMKVQISASGFM
Sbjct: 1   MDGSA----GTGTGNSHRLLDGVHRRKPTKKTKQPNKNKPIKVVYISNPMKVQISASGFM 60

Query: 61  ALVQQLTGQDADFPDPSNFPPAAVRDAVASPDIHHTTADANLMMNNNNPSLTVEIPMEDD 120
           ALVQQLTGQDA+FPD S FPPAA     A PDIH TTADANLMM NNNPSLTVE PMEDD
Sbjct: 61  ALVQQLTGQDAEFPDSSKFPPAA-----AFPDIHDTTADANLMM-NNNPSLTVEPPMEDD 120

Query: 121 PFLGSFYDDIEDLIFPPPVIGNYPALLPAAAATAVLYESYAR 162
           P LG+FYDDI+DLIFPPPVIGNYPALLPAAAATAVLYESYAR
Sbjct: 121 PLLGTFYDDIDDLIFPPPVIGNYPALLPAAAATAVLYESYAR 152

[Close]

BLAST of Cp4.1LG10g11090 vs. ExPASy TrEMBL
Match: A0A0A0L3J8 (VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G431960 PE=4 SV=1)

HSP 1 Score: 189 bits (480), Expect = 1.30e-58
Identity = 107/163 (65.64%), Postives = 120/163 (73.62%), Query Frame = 0


Query: 10  GTGTGNSHRVLDGVHRRKATKKTKQPNKN--KPIKVVYISNPMKVQISASGFMALVQQLT 69
           GT TG+ HR LD V+RRK TKKTKQP     KPIKVVYISNPMKVQ SASGFMALVQ+LT
Sbjct: 4   GTATGSDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQELT 63

Query: 70  GQDADFPDPSNFPPAAVRDAVASPDIHHTTADA--------NLMMNNNNPSLTVEIPMED 129
           GQDADFPDPS FPP+AV D  AS D  + T  +        NL++N+NN SL  E+P ED
Sbjct: 64  GQDADFPDPSKFPPSAVCDGAASTDQLYNTISSGGEDDGATNLIVNSNNSSLVDEVPAED 123

Query: 130 DPFLGSFYDDIEDLIFPPPVIGNYPALLPAAAATAVLYESYAR 162
           D  LGSFYDD +DLIFP PVIGN+  LLPA  A AV+YES AR
Sbjct: 124 D-ILGSFYDDFDDLIFPSPVIGNFSGLLPAPVA-AVVYESNAR 164

[Close]

BLAST of Cp4.1LG10g11090 vs. ExPASy TrEMBL
Match: A0A5A7SJV9 (Sigma factor binding protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G002890 PE=4 SV=1)

HSP 1 Score: 182 bits (461), Expect = 1.00e-55
Identity = 104/163 (63.80%), Postives = 118/163 (72.39%), Query Frame = 0


Query: 10  GTGTGNSHRVLDGVHRRKATKKTKQPNKN--KPIKVVYISNPMKVQISASGFMALVQQLT 69
           G  TGN+ R LD V+RRK  KKTKQ NK   KPIKVVYISNPMKVQ SAS FMALVQ+LT
Sbjct: 4   GAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQELT 63

Query: 70  GQDADFPDPSNFPPAAVRDAVASPDIHHTTAD--------ANLMMNNNNPSLTVEIPMED 129
           GQDADFPDPS FPP+AV D  AS D  + T          +NL++N+NNPSL  ++P ED
Sbjct: 64  GQDADFPDPSKFPPSAVCDDAASTDQLYNTVSGGGDDDGASNLIVNSNNPSLVDDVPAED 123

Query: 130 DPFLGSFYDDIEDLIFPPPVIGNYPALLPAAAATAVLYESYAR 162
           D  LGSFYDD +DLIFPPPV+GN   LLP   A AV+YES AR
Sbjct: 124 D-ILGSFYDDFDDLIFPPPVMGNLSGLLPGPMA-AVVYESNAR 164

[Close]

BLAST of Cp4.1LG10g11090 vs. TAIR 10
Match: AT3G56710.1 (sigma factor binding protein 1 )

HSP 1 Score: 56.6 bits (135), Expect = 2.2e-08
Identity = 30/49 (61.22%), Postives = 35/49 (71.43%), Query Frame = 0


Query: 23 VHRRKATKKTKQPNKNKPIKVVYISNPMKVQISASGFMALVQQLTGQDA 72
          V R+   +K K  + NKPIKV YISNPM+VQ  AS F  LVQ+LTGQDA
Sbjct: 22 VSRKSPKQKKKTTSTNKPIKVRYISNPMRVQTCASKFRELVQELTGQDA 70

[Close]

BLAST of Cp4.1LG10g11090 vs. TAIR 10
Match: AT2G41180.1 (VQ motif-containing protein )

HSP 1 Score: 49.7 bits (117), Expect = 2.6e-06
Identity = 29/52 (55.77%), Postives = 35/52 (67.31%), Query Frame = 0


Query: 30 KKTKQPNKNKPIKVVYISNPMKVQISASGFMALVQQLTGQD-ADF-PDPSNF 80
          +K K    +KPIKV YISNPM+V+   S F  LVQ+LTGQD AD  P P+ F
Sbjct: 26 QKRKSTTTHKPIKVRYISNPMRVETCPSKFRELVQELTGQDAADLPPSPTTF 77

The following BLAST results are available for this feature:

BLAST of Cp4.1LG10g11090 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LDH1	3.0e-07	61.22	Sigma factor binding protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]
O80669	3.7e-05	55.77	Sigma factor binding protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]

BLAST of Cp4.1LG10g11090 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023544826.1	7.54e-111	100.00	uncharacterized protein LOC111804304 [Cucurbita pepo subsp. pepo]	[more]
XP_023521198.1	5.14e-99	93.87	sigma factor binding protein 2, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
KAG6603312.1	9.35e-99	92.59	Sigma factor binding protein 1, chloroplastic, partial [Cucurbita argyrosperma s...	[more]
XP_022932879.1	4.08e-98	92.59	sigma factor binding protein 2, chloroplastic-like [Cucurbita moschata]	[more]
XP_022967903.1	3.53e-88	87.04	sigma factor binding protein 2, chloroplastic-like isoform X2 [Cucurbita maxima]	[more]

BLAST of Cp4.1LG10g11090 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EY87	1.98e-98	92.59	sigma factor binding protein 2, chloroplastic-like OS=Cucurbita moschata OX=3662...	[more]
A0A6J1HWH9	1.71e-88	87.04	sigma factor binding protein 2, chloroplastic-like isoform X2 OS=Cucurbita maxim...	[more]
A0A6J1HS32	3.87e-88	87.04	sigma factor binding protein 2, chloroplastic-like isoform X1 OS=Cucurbita maxim...	[more]
A0A0A0L3J8	1.30e-58	65.64	VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G431960 PE=4 SV=...	[more]
A0A5A7SJV9	1.00e-55	63.80	Sigma factor binding protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]

BLAST of Cp4.1LG10g11090 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G56710.1	2.2e-08	61.22	sigma factor binding protein 1	[more]
AT2G41180.1	2.6e-06	55.77	VQ motif-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 46..71 e-value: 2.6E-11 score: 42.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 23..37
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..16
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..37
None	No IPR available	PANTHER	PTHR33624:SF2	SIGMA FACTOR BINDING PROTEIN 1, CHLOROPLASTIC	coord: 23..150
IPR039335	Sigma factor binding protein 1/2	PANTHER	PTHR33624	SIGMA FACTOR BINDING PROTEIN 1, CHLOROPLASTIC	coord: 23..150

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG10g11090.1	Cp4.1LG10g11090.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051091	positive regulation of DNA-binding transcription factor activity