Cp4.1LG10g10960 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG10g10960
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	replication factor C subunit 3
Location	Cp4.1LG10: 6439149 .. 6445971 (-)
RNA-Seq Expression	Cp4.1LG10g10960
Synteny	Cp4.1LG10g10960

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGGAGAATAAAACCTGGAAAGTTGATGTAAGTTTCCGTTTTTTAGTGATGCCATTGGAAGGCAATTGAAAGCATTTTAGTTATCTGTTGATATGATTGCTACTTCAGAATGTTATAGAATTGCGTAAAATTTAACTAGTTGAAGCTGTTCATTTGCTGTTTAACTTAATTTTCTCATAATCTCTTCTTTCTCTGTCTCTATGCCCTTCCTTTTTCGTTTTTCTTCTCAGGCTGGAACTAGAAATGTTGAAATAGAGTTAACCACCATATCAAGTACAAACCACGTCGAGCTCACTCCCAGCGATGCAGGTTTCCAAGATAGGTATATTGTTCAAGAGATAATCAAGGATATGGCGAAAAACAGACCCATTGACTCCAAAGGGAAAAGGGGACATAAAGGTGTTGATTCTTCCCCATACCCTCCAACCATATTTATAAGTTGATCATGCTTGAGAACTTATTGATTTTCATTGATCATTTGGTAGCTTTTGTTACCAGTATGCTTGAATGCTCAAGACTCTGTATATATATAAGATATTGAGATTTTTGGTGCTTGTGATGTATCAGTTTTGGTTCTAAATGACGTTGACAAACTATCCAGAGAAGCACAGCACTCTCTTAGGAGAACGATGGAGAAATATAGCTCGTATTGTAGGTTAATACTTTGCTGCAATAGTTCATCAAGAGTTACTGAAGCAATCCGTTCTCGCTGCCTAAATGTGCGGATAAATGGACCAACAGATGATGAGGTCAGGAGAGAATGGTTTCTTTGTATTGTAATTTTAACTTTTTGTGCTGAATATGAATTTGAATAAACTAAANTTCTTTTTAGCCTTTATAAAATTTAACAGGAAAATTAAAATTTAACAATTTTTTAAAATTAATTCTATAATTAAGGGTATTTTTGAATTTATAAAATTATAAAATAAAAAATATTATATTTTATAATTTAACAAATTTATTTATTTATTATTTAGCCTTTATAAAATTTAACAATTTTTTAAAACTAATTTTATAATTAAGGGTATTTTTGAATTTATAAAATTATAAAATAATTTTTTTTTTATAATTTAACAAAATTTTAAAATTATTATTATAATTAAGGGTATTTTTGAATTTATAAAATTATAAAATAATTTTTTTTAGCCTTTATAAAATTTAACAGGAAAATTAAAATTTAACAATTTTTTAAAATTAATTCTATAATTAAGGGTATTTTTGAATTTATAAAATTATAAAATAAAAAATATTATATTTTATAATTTAACAAATTTATTTATTTATTATTTAGCCTTTATAAAATTTAACAATTTTTTAAAACTAATTTTATAATTAAGGGTATTTTTGAATTTATAAAATTATAAAATAAAAAATATTATGTTTTATAATTTAACAATATATATTTTTTATTATTATTTAGCCTTTATAAAATTTAACAGGAAAATTAAAATTGAATGCCCGCAATCCACACCCTACTGCTGAGGTCGCCTCCCTCCTCACTTGCCATCAGTTCTGTTTCTTTTTCCCGCCATTTCAATCCTCGCCCAAGCTTTTGCTCTCTCTTTCACGCACAATTCTTCTTTCTCTTTCTCGATTCACGCTAATCTCGAAACGCCAGGGAAGATGCTGTGGGTCGACAAGTATCGTCCAAAAACCCTAGATCAGATCACAGTTCATCAAGATGTAGCACAGAATCTTAAGAAACTGGTAACCAAATTTCGTTGTTGTTTTCTTACCTCTTTTTTCCTTGCATTCCTGAATTCATTCTTCATTTGGCGCTTTTGATGTGTGTTTTCTTTTAATCTTCTCGTAGGTTACCGAGCAGGACTGCCCTCATTTGCTCTTCTTTGGCCCCTCCGGTTCCGGAAAGAAAACCCTAGTCATGGCGCTTATCCGGCAGATGTTTGGAGCAAGTGCGGAGAAGGTATTGGCTCTTGAGTTTTTGTTTACTTGCTGGGATTTTGTTTTTTTTTTTTTTTTTTTTTTNTAAATGATGGACCAGAAGAATGTAATTATAAATGTTATGTTCTAACCAACGTGATAAATTTCATTTGTATCTAATTTAATATTTAGATGTAAGTTCAGGAGAAAGAATGCCTTTTCAGATAATAATAATAAAAAGAAAGAATTACTGTAGCCATTTGGACCTAAAAGCTGTTAAAAAAAAGTTACATCTTTTCACCAGATTGTCAAGGTACTAGAGTTCATTGGGAAGAAAGAAGGACTGCAACTTCCATCTGGATTTGCTTCCCGCATTGCAGAAAAATCAAACCGGAGTTTGAGGAGAGCTATACTATCATTCGAGACTTGTCGTGTTCAACAGTTAGTCTCCATTTGGACTCATACTGATCTAAGCTTCTCTCTCACTGCTTGTCATCAAATTACATTGGACATCAATCTTTGAGGATTGGTACTGAGCTGTTAATTTATTTTATCTTTTGGGTTAGGTATCCTTTTGTTAGTAACCAGGCAATACCACCGATGGATTGGGAGGAGTACATCTCTGAGATAGCGTCTGACATAATGAAGGAGCAGAGCCCCAAGAGGTACTTCTCTTATGTACCTTTTTCTGTTGTATTTTATGCTATAACAAACATCTCAATATCATATACGTGTGGCTTCTCTTCATATACATTAGTTGGGTACTTCTGACACCCCATCTGTTATGCAAACGATAATGAAACTGCTTTTGTTTCTTAAACTCTGCTGTCCAACTATTCTTCAAGAACAAATGATTACATGAAGATAAACAATCCTTAAACTTCTATTGATGGTATCCTTGATTATGATGATCTTTGTCTGGTGGGATGAAGGTGGTAGCATTTCCTGTTCACCATTAGAACTTATCTCTGATACTTCACCTTTTTTAGTCGAGATTGAATTTTCTTTTTTGAACAAGAAACAACTTCTCATTAATATAATGAAAGGAATTGTTCATGGGATACAAACTCCTAAAGGGGTGAAAACAGAAAAAGAAAAAGAAAAATCAAGAACATAGCGGCAATTACAATCAAATAAAGCTCAGCCCTGGGAATAATAAAACGACAAATGCTTCATGCATTATTAAAAGCTTCTCAGCCACTAGCTCATCCATCGAGACATCTTTTAAATTCTCTTCATGCAAATGAGCTATAATAACTTCCTCAGTTAAAGGTCACTTAAATCGGAATTTGACTTCATCCCTTAACCAACCAAAATAAATGTTATATGAACTACCTTTTTTCCAACGAATGCATTAAGCACGGGAACATACAATGCTACCTTGGAATTCCACATGAATTTATGAGCTTTGAATAAACAATATCAACATTTGGCTTTTGTAGAAGAACAAATTTGGACAACGGTGCTGCTGAAACTTCTTCAAACCCCCATGTGTTCTAGGATAGAATTTTCATTGAATCACAAAGAATAATTATTGAAATCATCTCACAATCTGACATTTACAGCCAACTGTTATGAAATCTAAAAGGGAAAGGCCTCCAAACAAAACTTCCAGCTTCCAAAAAGTAAAGGAAAGTGGTNTTGTCTTGGTACCCTTGAATTTTCAAACACAACTGATCCCTAAATTAATACCAAATATGGGCAGTGAAGCCGAATAAATTTCTTCAAAGCTGTACTTTTAGAATGATCCCCAAAGCCTCTAGTATTCCATGATGTAACTTTCATTGTTGAAACTCACAATAGTTAAACAAATTTTAAAAATCAATTGGGGATGTTGGAGGAATACTACGAATTTGAAGACCACAAATTTTAATTAAAGGAAAATTATTCTTTGAATTGTTGGTGAAGGAGGAGAAGTACTTACTGGAAGAGTTTCACAAGTAGCTGAATTTGTTACTGGAGGCTCATTCTCATTATCCTGAAAAAGAAGACCTAAAGTCTCTGCGTAAGAGACCTCCAAAAAGAAATCATTATCAGCCCCAAAATTCTGAGGCTTCAAGAGTTGAGACTGTCTCCACACTACTTAATCTAACATCAGATTCCCCATCCAAATCGATTGAAAGTGATGAAGGCACATGAGTACCTGCTCTGGACCAGGAAGGTTGATATCTGATTGAGATGAATGTTGGAAGCTCAATTTTCAGAGGACATTTGACTCACATTTGCTGAAGAATGGACTTGATTTGGCACTGTTATTAGAAGTCATGAACATGATTCCTCTAGAACATCTTCATTAAAATCTGAATTTTCTAGAATAGGGAACATAAGAGGAGCTGACTTTTCTAGAATAGGGAACATAAGAGGAGCTGACTCTTTCTTCCGAGTGTAGTGAAATGGATAGACTTCATTAGATCGATTTTGCTCTTCTCGACGATTTCGAGGACTTAAAGCCTCAATAGGTGTAGAAATAACTGATGAAATTGAGAATTTGATGAGTGAAGATTCCTAATCCTTGTTCAACATGTCCTTGGCCTTTGTAAGGCAGCAATGGAGGACCTCGATCATCTTTTGTAGTCTTGTGATTATGATTTGGCAGTCTGGACTTGTTTATTTTAACCCTTTGGCATCAATGTGGTTGTCATTCTATCGAGGAGTCTTTGCTTCATCTCCCCTTTAGTGAAAAAAAAAAGCTTGGTTTTGTGGATAACTGACATTTATGCTTTGTTATGGGGTCTTCGTGGTGAGAGGAACAATATAGTTGTTGAGGAAGTGGAGCGTTCTAGGGAGGAAGTTTGGTGTTCCACACTTCCCTTTCCGGTTCTGTGTATAAGGACTTTTGTAATGATCTATTAGGTATTATCTTGCTTGATTGGAGCCTCCTTGACTTTTGTTTTTGTCGAGCAGAGAAAAAACTATAGAATTGTGAGAAATTGCAATTGTCCTATTCATTTAATTGTCCATTAGAAACATATATGGTGAGAACTAGTGAAAATTTTAATTTTTCTATTCTTTTGTTATTAACTAGTTGTAGAATTGTGCTAGTTTGAAATAAATTTGGCCTTCTTTTTTGTGGTATAGACTGTACCAGATTCGTGGGAAGTTATATGAACTACTGGTTAATTGTATTCCACCAGAGATCATATTGAAGGTAATTATTCTTTCCCAATTTCTATTGATTTTTTCTGTCTTAATGTGAGATTCATATTATCTAGTTTCTCAGAGGCTGCTTTATGAGCTACTCAAGAAATTGGATGCTGAATTAAAGCATGAGGTCTGTCATTGGGCTGCATATTATGTAAGTTCATAATTTGACCTGTCAATTTGTTTACATTCCCTTTTATTATTTAATATCAGAACTTTTGCTGGAAATTTGAATATCAATCTCATTAAAATAACTTTTTTCCTCTCTGTCTTATGACGAGTTCTCCAAGTTTTCCTTGTTTTGCAATTTCTGGACCTTTTTCGTCAAAAGTAACTAGCGGATTACATCCTCCTAGACTTGATAGAATAAGTGTGTATGAACAAATATTTGAAAGTAGTTTTTTAAAATTAAATAATGTTCTTTACTTTTGAAAGAAACACCAATCAAGTGTTTCCTCCAAAGTACTTTAAGCATTTGTGTGTTGGAACTTGGTGAATACTGATGGATGGGGAGATTCTGAGAATTGAATAATACCAAATTATATTTGAGATTTATTGTAACAGTAGATATTATCCTCTTTGGGCTCTCTTTCGGGTTTCCCCTTAAGGCTTTTAAAATGCATCTGCTAGGGAGAGGTTTCCACACTCTTATAAAGAATGCTTCATTCTCTTCCCCAACCGATGTGATATCTCACATTTATGATGGATATAAAAGCAACGAAGAGAATTTTTTTAACAATATACGTCTCTGTTCTTTTTTACTCTGGTTGGTTCTATTAATCTGTATAATTTCAACCATGTTTTTTTAACTTTATTCCTATGCCATGGTTAATTTGTTACTAATGACGTCTGGTCAAATTGCCATCACAATCACGTAAGAAGAATCATCTACTTCAGTTTCTATCATATTGTGAACACTATAGCGGCGGGCCATAGATCCACATGCATTGGTTCACCAATATGATATCACTGATGAAACATGGCTGCAGAGAGTTTCACCTTTGTTCAGTTTCATATCTCATCTTTGCTTAAATCTTTTCCCAGGAACACAGGATGCGGCTTGGCCAGAAATCCATCTTCCATATTGAAGGTAAATCCATTTGGTATACAAAATATCAGACTAACTGTTCTGACATGAAAATTTAACGCCTCTGTGCTTCTTTTTTTCCCTCTGATTCTATTAGTTTATCAGCCACGATCTTAATTTCATCATCAAGTGCTGGATAATATCATCATACAATTTAATGGTTTGTTGAATCATGGATGGATTTGACTCTTCATGCTCTTGACATTTGTGAAAAGATTTCTTGTTCTCAACCTTTTATATAGACTCAACTGGAAGAAGCCAAAAAAAATTGTCTCTTAGTTTTTAATCTCCCTTCTGGTCTGATATGGCAGCTTTTGTGGCAAAGTTCATGAGCATATACAAGAGTTTCCTCATTTCAACGTTCGGCTGAAGAAAAAGCAACTGTATGTTCGTAGTTTTAGCGTGTCGGTGAATCAAGACAATGTGGTGCCATCTTATGTTCTTCAGTCAGTTTTGTTTGGCACTAGTTTGTTTGTTTGTTCATCATCCTCTAGGTTTTATCTATCAGGGAACTTGAAGCTGAACTCTTAGGGATTTGAACTGAATCTAACATGCCAAAAAAATGGAAATTTATTTAGTCATTTTGTTGCACTATCTCCTGGAGATAATGGGAAAAAATGGAAAATCCCAACCTTATTTGGCTGTGTTTTCATTGCTTTCGCTCAAAGTTTGAGGTTAGTTTTGTTTTGATTTTATATTTTGAACTGTTATGTT

mRNA sequence

GTGGAGAATAAAACCTGGAAAGTTGATGTAAGTTTCCGTTTTTTAGTGATGCCATTGGAAGGCAATTGAAAGCATTTTAGTTATCTGTTGATATGATTGCTACTTCAGAATGTTATAGAATTGCGTAAAATTTAACTAGTTGAAGCTGTTCATTTGCTGTTTAACTTAATTTTCTCATAATCTCTTCTTTCTCTGTCTCTATGCCCTTCCTTTTTCGTTTTTCTTCTCAGGCTGGAACTAGAAATGTTGAAATAGAGTTAACCACCATATCAAGTACAAACCACGTCGAGCTCACTCCCAGCGATGCAGGTTTCCAAGATAGGTATATTGTTCAAGAGATAATCAAGGATATGGCGAAAAACAGACCCATTGACTCCAAAGGGAAAAGGGGACATAAAGGGAAGATGCTGTGGGTCGACAAGTATCGTCCAAAAACCCTAGATCAGATCACAGTTCATCAAGATGTAGCACAGAATCTTAAGAAACTGGTTACCGAGCAGGACTGCCCTCATTTGCTCTTCTTTGGCCCCTCCGGTTCCGGAAAGAAAACCCTAGTCATGGCGCTTATCCGGCAGATGTTTGGAGCAAGTGCGGAGAAGATTGTCAAGGTACTAGAGTTCATTGGGAAGAAAGAAGGACTGCAACTTCCATCTGGATTTGCTTCCCGCATTGCAGAAAAATCAAACCGGAGTTTGAGGAGAGCTATACTATCATTCGAGACTTGTCGTGTTCAACAGTATCCTTTTGTTAGTAACCAGGCAATACCACCGATGGATTGGGAGGAGTACATCTCTGAGATAGCGTCTGACATAATGAAGGAGCAGAGCCCCAAGAGACTGTACCAGATTCGTGGGAAGTTATATGAACTACTGGTTAATTGTATTCCACCAGAGATCATATTGAAGAGGCTGCTTTATGAGCTACTCAAGAAATTGGATGCTGAATTAAAGCATGAGGTCTGTCATTGGGCTGCATATTATGAACACAGGATGCGGCTTGGCCAGAAATCCATCTTCCATATTGAAGGTAAATCCATTTGCTTTTGTGGCAAAGTTCATGAGCATATACAAGAGTTTCCTCATTTCAACGTTCGGCTGAAGAAAAAGCAACTGTATGTTCGTAGTTTTAGCGTGTCGGTGAATCAAGACAATGTGGTGCCATCTTATGTTCTTCAGTCAGTTTTGTTTGGCACTAGTTTGTTTGTTTGTTCATCATCCTCTAGGTTTTATCTATCAGGGAACTTGAAGCTGAACTCTTAGGGATTTGAACTGAATCTAACATGCCAAAAAAATGGAAATTTATTTAGTCATTTTGTTGCACTATCTCCTGGAGATAATGGGAAAAAATGGAAAATCCCAACCTTATTTGGCTGTGTTTTCATTGCTTTCGCTCAAAGTTTGAGGTTAGTTTTGTTTTGATTTTATATTTTGAACTGTTATGTT

Coding sequence (CDS)

ATGCCCTTCCTTTTTCGTTTTTCTTCTCAGGCTGGAACTAGAAATGTTGAAATAGAGTTAACCACCATATCAAGTACAAACCACGTCGAGCTCACTCCCAGCGATGCAGGTTTCCAAGATAGGTATATTGTTCAAGAGATAATCAAGGATATGGCGAAAAACAGACCCATTGACTCCAAAGGGAAAAGGGGACATAAAGGGAAGATGCTGTGGGTCGACAAGTATCGTCCAAAAACCCTAGATCAGATCACAGTTCATCAAGATGTAGCACAGAATCTTAAGAAACTGGTTACCGAGCAGGACTGCCCTCATTTGCTCTTCTTTGGCCCCTCCGGTTCCGGAAAGAAAACCCTAGTCATGGCGCTTATCCGGCAGATGTTTGGAGCAAGTGCGGAGAAGATTGTCAAGGTACTAGAGTTCATTGGGAAGAAAGAAGGACTGCAACTTCCATCTGGATTTGCTTCCCGCATTGCAGAAAAATCAAACCGGAGTTTGAGGAGAGCTATACTATCATTCGAGACTTGTCGTGTTCAACAGTATCCTTTTGTTAGTAACCAGGCAATACCACCGATGGATTGGGAGGAGTACATCTCTGAGATAGCGTCTGACATAATGAAGGAGCAGAGCCCCAAGAGACTGTACCAGATTCGTGGGAAGTTATATGAACTACTGGTTAATTGTATTCCACCAGAGATCATATTGAAGAGGCTGCTTTATGAGCTACTCAAGAAATTGGATGCTGAATTAAAGCATGAGGTCTGTCATTGGGCTGCATATTATGAACACAGGATGCGGCTTGGCCAGAAATCCATCTTCCATATTGAAGGTAAATCCATTTGCTTTTGTGGCAAAGTTCATGAGCATATACAAGAGTTTCCTCATTTCAACGTTCGGCTGAAGAAAAAGCAACTGTATGTTCGTAGTTTTAGCGTGTCGGTGAATCAAGACAATGTGGTGCCATCTTATGTTCTTCAGTCAGTTTTGTTTGGCACTAGTTTGTTTGTTTGTTCATCATCCTCTAGGTTTTATCTATCAGGGAACTTGAAGCTGAACTCTTAG

Protein sequence

MPFLFRFSSQAGTRNVEIELTTISSTNHVELTPSDAGFQDRYIVQEIIKDMAKNRPIDSKGKRGHKGKMLWVDKYRPKTLDQITVHQDVAQNLKKLVTEQDCPHLLFFGPSGSGKKTLVMALIRQMFGASAEKIVKVLEFIGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQQYPFVSNQAIPPMDWEEYISEIASDIMKEQSPKRLYQIRGKLYELLVNCIPPEIILKRLLYELLKKLDAELKHEVCHWAAYYEHRMRLGQKSIFHIEGKSICFCGKVHEHIQEFPHFNVRLKKKQLYVRSFSVSVNQDNVVPSYVLQSVLFGTSLFVCSSSSRFYLSGNLKLNS

Homology

[Close]

BLAST of Cp4.1LG10g10960 vs. ExPASy Swiss-Prot
Match: Q8VXX4 (Replication factor C subunit 3 OS=Arabidopsis thaliana OX=3702 GN=RFC3 PE=2 SV=1)

HSP 1 Score: 340.9 bits (873), Expect = 1.7e-92
Identity = 176/269 (65.43%), Postives = 213/269 (79.18%), Query Frame = 0


Query: 11  AGTRNVEIELTTISSTNHVELTPSDAGFQDRYIVQEIIKDMAKNRPIDSKGKRGHKGKML 70
           AG+R +++ELTT+SSTNHVELTPSDAGFQDRYIVQEIIK+MAKNRPID+KGK+G+K  +L
Sbjct: 77  AGSRTIDLELTTLSSTNHVELTPSDAGFQDRYIVQEIIKEMAKNRPIDTKGKKGYKVLVL 136

Query: 71  -WVDKYRPKTLDQITVHQDVAQNLKKLVTEQDCPHLLFFGPSGSGKKTLVM---ALIRQM 130
             VDK          + ++   +L++ + +      L    + S K T  +    L  ++
Sbjct: 137 NEVDK----------LSREAQHSLRRTMEKYSSSCRLILCCNSSSKVTEAIKSRCLNVRI 196

Query: 131 FGASAEKIVKVLEFIGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQQYPFVSNQ 190
              S E+IVKVLEF+ KKE LQLP GFA+RIAEKSNRSLRRAILS ETCRVQ YPF  NQ
Sbjct: 197 NAPSQEEIVKVLEFVAKKESLQLPQGFAARIAEKSNRSLRRAILSLETCRVQNYPFTGNQ 256

Query: 191 AIPPMDWEEYISEIASDIMKEQSPKRLYQIRGKLYELLVNCIPPEIILKRLLYELLKKLD 250
            I PMDWEEY++EIA+D+MKEQSPK+L+Q+RGK+YELLVNCIPPE+ILKRLL+ELLKKLD
Sbjct: 257 VISPMDWEEYVAEIATDMMKEQSPKKLFQVRGKVYELLVNCIPPEVILKRLLHELLKKLD 316

Query: 251 AELKHEVCHWAAYYEHRMRLGQKSIFHIE 276
           +ELK EVCHWAAYYEHRMRLGQK+IFHIE
Sbjct: 317 SELKLEVCHWAAYYEHRMRLGQKAIFHIE 335

[Close]

BLAST of Cp4.1LG10g10960 vs. ExPASy Swiss-Prot
Match: Q852K3 (Replication factor C subunit 5 OS=Oryza sativa subsp. japonica OX=39947 GN=RFC5 PE=2 SV=1)

HSP 1 Score: 315.1 bits (806), Expect = 1.0e-84
Identity = 161/268 (60.07%), Postives = 204/268 (76.12%), Query Frame = 0


Query: 12  GTRNVEIELTTISSTNHVELTPSDAGFQDRYIVQEIIKDMAKNRPIDSKGKRGHKGKML- 71
           G+RN+EIEL  +SS +HVE+ PSDAGFQDRY+VQE+IK+MAKNRPID+KGKR  K  +L 
Sbjct: 78  GSRNIEIELAMLSSAHHVEMNPSDAGFQDRYVVQEVIKEMAKNRPIDAKGKRAFKVLVLN 137

Query: 72  WVDKYRPKTLDQITVHQDVAQNLKKLVTEQDCPHLLFFGPSGSGKKTLVM---ALIRQMF 131
            VDK          + ++   +L++ + +      L    + S K T  +    L  ++ 
Sbjct: 138 EVDK----------LSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAVRSRCLNVRVN 197

Query: 132 GASAEKIVKVLEFIGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQQYPFVSNQA 191
             S ++IV+VLEFIGKKE LQLP GFA+RIA +SNR+LRRAIL FETC+VQQYPF SNQ 
Sbjct: 198 APSEDQIVQVLEFIGKKENLQLPFGFAARIAAQSNRNLRRAILFFETCKVQQYPFTSNQV 257

Query: 192 IPPMDWEEYISEIASDIMKEQSPKRLYQIRGKLYELLVNCIPPEIILKRLLYELLKKLDA 251
            PP+DWE+Y+SEIA+DIMKEQSPKRL+ +R K YELLVNCIPPE ILK+LL ELLKKLD+
Sbjct: 258 APPLDWEQYVSEIAADIMKEQSPKRLFAVRQKFYELLVNCIPPESILKKLLAELLKKLDS 317

Query: 252 ELKHEVCHWAAYYEHRMRLGQKSIFHIE 276
           +LKHE+CHWAA+YEH+MRLG K+IFH+E
Sbjct: 318 DLKHEICHWAAHYEHKMRLGSKAIFHLE 335

[Close]

BLAST of Cp4.1LG10g10960 vs. ExPASy Swiss-Prot
Match: P40938 (Replication factor C subunit 3 OS=Homo sapiens OX=9606 GN=RFC3 PE=1 SV=2)

HSP 1 Score: 206.5 bits (524), Expect = 5.1e-52
Identity = 113/262 (43.13%), Postives = 168/262 (64.12%), Query Frame = 0


Query: 17  EIELTTISSTNHVELTPSDAGFQDRYIVQEIIKDMAKNRPIDSKGKRGHKGKMLWVDKYR 76
           +IE++TI+S  H+E+ PSDAG  DR ++QE++K +A+++ +++  +R  K  +L      
Sbjct: 81  KIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQLETNSQRDFKVVLL------ 140

Query: 77  PKTLDQITVHQDVAQNLKKLVTEQDCPHLLFFGPSGSGK---KTLVMALIRQMFGASAEK 136
              +D++T  +D    L++ + +      L    + + K         L  ++   S E 
Sbjct: 141 -TEVDKLT--KDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPSIED 200

Query: 137 IVKVLEFIGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQQYPFVSNQAIPPMDW 196
           I  VL  + KKEGL LPS  A R+AEKS R+LR+A+L  E CRVQQYPF ++Q IP  DW
Sbjct: 201 ICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPFTADQEIPETDW 260

Query: 197 EEYISEIASDIMKEQSPKRLYQIRGKLYELLVNCIPPEIILKRLLYELLKKLDAELKHEV 256
           E Y+ E A+ I+ +Q+P+RL ++RG+LYELL +CIPPEII+K LL ELL   D +LK EV
Sbjct: 261 EVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELLHNCDGQLKGEV 320

Query: 257 CHWAAYYEHRMRLGQKSIFHIE 276
              AAYYEHR++LG K+I+H+E
Sbjct: 321 AQMAAYYEHRLQLGSKAIYHLE 333

[Close]

BLAST of Cp4.1LG10g10960 vs. ExPASy Swiss-Prot
Match: Q8R323 (Replication factor C subunit 3 OS=Mus musculus OX=10090 GN=Rfc3 PE=1 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 1.5e-51
Identity = 112/262 (42.75%), Postives = 167/262 (63.74%), Query Frame = 0


Query: 17  EIELTTISSTNHVELTPSDAGFQDRYIVQEIIKDMAKNRPIDSKGKRGHKGKMLWVDKYR 76
           +IE++TI+S  H+E+ PSDAG  DR ++QE++K +A+++ +++  +R  K  +L      
Sbjct: 81  KIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQLETSSQRDFKVVLL------ 140

Query: 77  PKTLDQITVHQDVAQNLKKLVTEQDCPHLLFFGPSGSGK---KTLVMALIRQMFGASAEK 136
              +D++T  +D    L++ + +      L    + + K         L  ++   S E 
Sbjct: 141 -TEVDKLT--KDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPSIED 200

Query: 137 IVKVLEFIGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQQYPFVSNQAIPPMDW 196
           I  VL  + +KEGL LPS  A R+AEKS R+LR+A+L  E CRVQQYPF  +Q IP  DW
Sbjct: 201 ICSVLSTVCRKEGLALPSTLARRLAEKSCRNLRKALLMCEACRVQQYPFTEDQEIPETDW 260

Query: 197 EEYISEIASDIMKEQSPKRLYQIRGKLYELLVNCIPPEIILKRLLYELLKKLDAELKHEV 256
           E Y+ E A+ I+ +Q+P+RL ++RG+LYELL +CIPPEII+K LL ELL   D +LK EV
Sbjct: 261 EVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELLHNCDGQLKGEV 320

Query: 257 CHWAAYYEHRMRLGQKSIFHIE 276
              AAYYEHR++LG K+I+H+E
Sbjct: 321 AQMAAYYEHRLQLGSKAIYHLE 333

[Close]

BLAST of Cp4.1LG10g10960 vs. ExPASy Swiss-Prot
Match: Q2TBV1 (Replication factor C subunit 3 OS=Bos taurus OX=9913 GN=RFC3 PE=2 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 4.3e-51
Identity = 111/262 (42.37%), Postives = 167/262 (63.74%), Query Frame = 0


Query: 17  EIELTTISSTNHVELTPSDAGFQDRYIVQEIIKDMAKNRPIDSKGKRGHKGKMLWVDKYR 76
           +IE++TI+S  H+E+ PSDAG  DR ++QE++K +A+++ +++  ++  K  +L      
Sbjct: 81  KIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQLETSSQKDFKVVLL------ 140

Query: 77  PKTLDQITVHQDVAQNLKKLVTEQDCPHLLFFGPSGSGK---KTLVMALIRQMFGASAEK 136
              +D++T  +D    L++ + +      L    + + K         L  ++   S E 
Sbjct: 141 -TEVDKLT--KDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPSIED 200

Query: 137 IVKVLEFIGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQQYPFVSNQAIPPMDW 196
           I  VL  + KKEGL LP   A R+AEKS R+LR+A+L  E CRVQQYPF ++Q IP  DW
Sbjct: 201 ICHVLSTVCKKEGLNLPPQLAHRLAEKSCRNLRKALLMCEACRVQQYPFTADQEIPETDW 260

Query: 197 EEYISEIASDIMKEQSPKRLYQIRGKLYELLVNCIPPEIILKRLLYELLKKLDAELKHEV 256
           E Y+ E A+ I+ +Q+P+RL ++RG+LYELL +CIPPEII+K LL ELL   D +LK EV
Sbjct: 261 EVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELLHNCDGQLKGEV 320

Query: 257 CHWAAYYEHRMRLGQKSIFHIE 276
              AAYYEHR++LG K+I+H+E
Sbjct: 321 AQMAAYYEHRLQLGSKAIYHLE 333

[Close]

BLAST of Cp4.1LG10g10960 vs. NCBI nr
Match: XP_038877712.1 (replication factor C subunit 3 [Benincasa hispida])

HSP 1 Score: 396 bits (1018), Expect = 1.69e-134
Identity = 206/283 (72.79%), Postives = 237/283 (83.75%), Query Frame = 0


Query: 2   PFLFRFSSQAGTRNVEIELTTISSTNHVELTPSDAGFQDRYIVQEIIKDMAKNRPIDSKG 61
           PFLF FSSQAGTR ++IELTT+SSTNHVELTPSDAGFQDRYIVQEIIK+MAKNRPIDSKG
Sbjct: 57  PFLFCFSSQAGTRTIDIELTTLSSTNHVELTPSDAGFQDRYIVQEIIKEMAKNRPIDSKG 116

Query: 62  KRGHKGKMLWVDKYRPKTLDQITVHQDVAQNLKKLVTEQDCPHLLFFGPSGSGKKTLVM- 121
           K+GHK  +L         +D+++  ++   +L++ + +      L    + S + T  + 
Sbjct: 117 KKGHKVLVL-------NDVDKLS--REAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIR 176

Query: 122 --ALIRQMFGASAEKIVKVLEFIGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQ 181
              L  ++ G + E+IVKVLEFIGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQ
Sbjct: 177 SRCLNVRINGPTEEQIVKVLEFIGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQ 236

Query: 182 QYPFVSNQAIPPMDWEEYISEIASDIMKEQSPKRLYQIRGKLYELLVNCIPPEIILKRLL 241
           QYPFVSNQAIPPMDWEEYI+EIASDI+KEQSPKRL+Q+RGKLYELLVNCIPPEIILKRLL
Sbjct: 237 QYPFVSNQAIPPMDWEEYITEIASDILKEQSPKRLFQVRGKLYELLVNCIPPEIILKRLL 296

Query: 242 YELLKKLDAELKHEVCHWAAYYEHRMRLGQKSIFHIEGKSICF 281
           YELLKKLDAELKHE+CHWAAYYEHRMRLGQK+IFHIEGK I +
Sbjct: 297 YELLKKLDAELKHEICHWAAYYEHRMRLGQKAIFHIEGKCIIY 330

[Close]

BLAST of Cp4.1LG10g10960 vs. NCBI nr
Match: XP_022950838.1 (replication factor C subunit 3 isoform X2 [Cucurbita moschata])

HSP 1 Score: 385 bits (990), Expect = 6.63e-130
Identity = 205/268 (76.49%), Postives = 226/268 (84.33%), Query Frame = 0


Query: 11  AGTRNVEIELTTISSTNHVELTPSDAGFQDRYIVQEIIKDMAKNRPIDSKGKRGHKGKML 70
           AGTRNVEIELTTISSTNHVELTPSDAGFQDRYIVQEIIKDMAKNRPIDSKGKRGHK  +L
Sbjct: 77  AGTRNVEIELTTISSTNHVELTPSDAGFQDRYIVQEIIKDMAKNRPIDSKGKRGHKVLVL 136

Query: 71  WVDKYRPKTLDQITVHQDVAQNLKKLVTEQDCPHLLFFGPSGSGKKTLVM---ALIRQMF 130
                    +D+++  ++   +L++ + +      L    + S + T  +    L  ++ 
Sbjct: 137 -------NDVDKLS--REAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSRCLNVRIN 196

Query: 131 GASAEKIVKVLEFIGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQQYPFVSNQA 190
           G + ++IVKVLEFIGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQQYPFVSNQA
Sbjct: 197 GPTDDQIVKVLEFIGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQQYPFVSNQA 256

Query: 191 IPPMDWEEYISEIASDIMKEQSPKRLYQIRGKLYELLVNCIPPEIILKRLLYELLKKLDA 250
           IPPMDWEEYISEIASDIMKEQSPKRLYQ+RGKLYELLVNCIPPEIILKRLLYELLKKLDA
Sbjct: 257 IPPMDWEEYISEIASDIMKEQSPKRLYQVRGKLYELLVNCIPPEIILKRLLYELLKKLDA 316

Query: 251 ELKHEVCHWAAYYEHRMRLGQKSIFHIE 275
           ELKHEVCHWAAYYEHRMRLGQKSIFHIE
Sbjct: 317 ELKHEVCHWAAYYEHRMRLGQKSIFHIE 335

[Close]

BLAST of Cp4.1LG10g10960 vs. NCBI nr
Match: XP_022978217.1 (replication factor C subunit 3 [Cucurbita maxima])

HSP 1 Score: 385 bits (990), Expect = 6.63e-130
Identity = 205/268 (76.49%), Postives = 226/268 (84.33%), Query Frame = 0


Query: 11  AGTRNVEIELTTISSTNHVELTPSDAGFQDRYIVQEIIKDMAKNRPIDSKGKRGHKGKML 70
           AGTRNVEIELTTISSTNHVELTPSDAGFQDRYIVQEIIKDMAKNRPIDSKGKRGHK  +L
Sbjct: 77  AGTRNVEIELTTISSTNHVELTPSDAGFQDRYIVQEIIKDMAKNRPIDSKGKRGHKVLVL 136

Query: 71  WVDKYRPKTLDQITVHQDVAQNLKKLVTEQDCPHLLFFGPSGSGKKTLVM---ALIRQMF 130
                    +D+++  ++   +L++ + +      L    + S + T  +    L  ++ 
Sbjct: 137 -------NDVDKLS--REAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSRCLNVRIN 196

Query: 131 GASAEKIVKVLEFIGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQQYPFVSNQA 190
           G + ++IVKVLEFIGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQQYPFVSNQA
Sbjct: 197 GPTDDEIVKVLEFIGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQQYPFVSNQA 256

Query: 191 IPPMDWEEYISEIASDIMKEQSPKRLYQIRGKLYELLVNCIPPEIILKRLLYELLKKLDA 250
           IPPMDWEEYISEIASDIMKEQSPKRLYQ+RGKLYELLVNCIPPEIILKRLLYELLKKLDA
Sbjct: 257 IPPMDWEEYISEIASDIMKEQSPKRLYQVRGKLYELLVNCIPPEIILKRLLYELLKKLDA 316

Query: 251 ELKHEVCHWAAYYEHRMRLGQKSIFHIE 275
           ELKHEVCHWAAYYEHRMRLGQKSIFHIE
Sbjct: 317 ELKHEVCHWAAYYEHRMRLGQKSIFHIE 335

[Close]

BLAST of Cp4.1LG10g10960 vs. NCBI nr
Match: KAG6603461.1 (Replication factor C subunit 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 385 bits (990), Expect = 1.03e-129
Identity = 205/268 (76.49%), Postives = 226/268 (84.33%), Query Frame = 0


Query: 11  AGTRNVEIELTTISSTNHVELTPSDAGFQDRYIVQEIIKDMAKNRPIDSKGKRGHKGKML 70
           AGTRNVEIELTTISSTNHVELTPSDAGFQDRYIVQEIIKDMAKNRPIDSKGKRGHK  +L
Sbjct: 77  AGTRNVEIELTTISSTNHVELTPSDAGFQDRYIVQEIIKDMAKNRPIDSKGKRGHKVLVL 136

Query: 71  WVDKYRPKTLDQITVHQDVAQNLKKLVTEQDCPHLLFFGPSGSGKKTLVM---ALIRQMF 130
                    +D+++  ++   +L++ + +      L    + S + T  +    L  ++ 
Sbjct: 137 -------NDVDKLS--REAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSRCLNVRIN 196

Query: 131 GASAEKIVKVLEFIGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQQYPFVSNQA 190
           G + ++IVKVLEFIGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQQYPFVSNQA
Sbjct: 197 GPTDDQIVKVLEFIGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQQYPFVSNQA 256

Query: 191 IPPMDWEEYISEIASDIMKEQSPKRLYQIRGKLYELLVNCIPPEIILKRLLYELLKKLDA 250
           IPPMDWEEYISEIASDIMKEQSPKRLYQ+RGKLYELLVNCIPPEIILKRLLYELLKKLDA
Sbjct: 257 IPPMDWEEYISEIASDIMKEQSPKRLYQVRGKLYELLVNCIPPEIILKRLLYELLKKLDA 316

Query: 251 ELKHEVCHWAAYYEHRMRLGQKSIFHIE 275
           ELKHEVCHWAAYYEHRMRLGQKSIFHIE
Sbjct: 317 ELKHEVCHWAAYYEHRMRLGQKSIFHIE 335

[Close]

BLAST of Cp4.1LG10g10960 vs. NCBI nr
Match: XP_008442036.1 (PREDICTED: replication factor C subunit 3 [Cucumis melo] >XP_008442037.1 PREDICTED: replication factor C subunit 3 [Cucumis melo] >XP_008442038.1 PREDICTED: replication factor C subunit 3 [Cucumis melo] >KAA0041829.1 replication factor C subunit 3 [Cucumis melo var. makuwa] >TYK05351.1 replication factor C subunit 3 [Cucumis melo var. makuwa])

HSP 1 Score: 372 bits (954), Expect = 1.91e-124
Identity = 195/268 (72.76%), Postives = 223/268 (83.21%), Query Frame = 0


Query: 11  AGTRNVEIELTTISSTNHVELTPSDAGFQDRYIVQEIIKDMAKNRPIDSKGKRGHKGKML 70
           AGTR ++IELTT+SS NHVELTPSDAGFQDRYIVQEIIK+MAKNRPIDSKGKRGHK  +L
Sbjct: 77  AGTRTIDIELTTLSSANHVELTPSDAGFQDRYIVQEIIKEMAKNRPIDSKGKRGHKVLVL 136

Query: 71  WVDKYRPKTLDQITVHQDVAQNLKKLVTEQDCPHLLFFGPSGSGKKTLVM---ALIRQMF 130
                    +D+++  ++   +L++ + +      L    + S + T  +    L  ++ 
Sbjct: 137 -------NDVDKLS--REAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSRCLNVRIN 196

Query: 131 GASAEKIVKVLEFIGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQQYPFVSNQA 190
           G + E+IVKVLEFIGKKEGLQLPSGFASRIAEKS+RSLRRAILSFETCRVQQYPFV NQA
Sbjct: 197 GPTEEQIVKVLEFIGKKEGLQLPSGFASRIAEKSSRSLRRAILSFETCRVQQYPFVGNQA 256

Query: 191 IPPMDWEEYISEIASDIMKEQSPKRLYQIRGKLYELLVNCIPPEIILKRLLYELLKKLDA 250
           IPPMDWEEYI+EIASDIMKEQSPKRL+Q+RGKLYELLVNCIPPEIILKRLLYELLKKLDA
Sbjct: 257 IPPMDWEEYITEIASDIMKEQSPKRLFQVRGKLYELLVNCIPPEIILKRLLYELLKKLDA 316

Query: 251 ELKHEVCHWAAYYEHRMRLGQKSIFHIE 275
           ELKHEVCHWAAYYEHRMRLGQK+IFHIE
Sbjct: 317 ELKHEVCHWAAYYEHRMRLGQKAIFHIE 335

[Close]

BLAST of Cp4.1LG10g10960 vs. ExPASy TrEMBL
Match: A0A6J1IKJ1 (replication factor C subunit 3 OS=Cucurbita maxima OX=3661 GN=LOC111478265 PE=4 SV=1)

HSP 1 Score: 385 bits (990), Expect = 3.21e-130
Identity = 205/268 (76.49%), Postives = 226/268 (84.33%), Query Frame = 0


Query: 11  AGTRNVEIELTTISSTNHVELTPSDAGFQDRYIVQEIIKDMAKNRPIDSKGKRGHKGKML 70
           AGTRNVEIELTTISSTNHVELTPSDAGFQDRYIVQEIIKDMAKNRPIDSKGKRGHK  +L
Sbjct: 77  AGTRNVEIELTTISSTNHVELTPSDAGFQDRYIVQEIIKDMAKNRPIDSKGKRGHKVLVL 136

Query: 71  WVDKYRPKTLDQITVHQDVAQNLKKLVTEQDCPHLLFFGPSGSGKKTLVM---ALIRQMF 130
                    +D+++  ++   +L++ + +      L    + S + T  +    L  ++ 
Sbjct: 137 -------NDVDKLS--REAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSRCLNVRIN 196

Query: 131 GASAEKIVKVLEFIGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQQYPFVSNQA 190
           G + ++IVKVLEFIGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQQYPFVSNQA
Sbjct: 197 GPTDDEIVKVLEFIGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQQYPFVSNQA 256

Query: 191 IPPMDWEEYISEIASDIMKEQSPKRLYQIRGKLYELLVNCIPPEIILKRLLYELLKKLDA 250
           IPPMDWEEYISEIASDIMKEQSPKRLYQ+RGKLYELLVNCIPPEIILKRLLYELLKKLDA
Sbjct: 257 IPPMDWEEYISEIASDIMKEQSPKRLYQVRGKLYELLVNCIPPEIILKRLLYELLKKLDA 316

Query: 251 ELKHEVCHWAAYYEHRMRLGQKSIFHIE 275
           ELKHEVCHWAAYYEHRMRLGQKSIFHIE
Sbjct: 317 ELKHEVCHWAAYYEHRMRLGQKSIFHIE 335

[Close]

BLAST of Cp4.1LG10g10960 vs. ExPASy TrEMBL
Match: A0A6J1GG01 (replication factor C subunit 3 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111453820 PE=4 SV=1)

HSP 1 Score: 385 bits (990), Expect = 3.21e-130
Identity = 205/268 (76.49%), Postives = 226/268 (84.33%), Query Frame = 0


Query: 11  AGTRNVEIELTTISSTNHVELTPSDAGFQDRYIVQEIIKDMAKNRPIDSKGKRGHKGKML 70
           AGTRNVEIELTTISSTNHVELTPSDAGFQDRYIVQEIIKDMAKNRPIDSKGKRGHK  +L
Sbjct: 77  AGTRNVEIELTTISSTNHVELTPSDAGFQDRYIVQEIIKDMAKNRPIDSKGKRGHKVLVL 136

Query: 71  WVDKYRPKTLDQITVHQDVAQNLKKLVTEQDCPHLLFFGPSGSGKKTLVM---ALIRQMF 130
                    +D+++  ++   +L++ + +      L    + S + T  +    L  ++ 
Sbjct: 137 -------NDVDKLS--REAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSRCLNVRIN 196

Query: 131 GASAEKIVKVLEFIGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQQYPFVSNQA 190
           G + ++IVKVLEFIGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQQYPFVSNQA
Sbjct: 197 GPTDDQIVKVLEFIGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQQYPFVSNQA 256

Query: 191 IPPMDWEEYISEIASDIMKEQSPKRLYQIRGKLYELLVNCIPPEIILKRLLYELLKKLDA 250
           IPPMDWEEYISEIASDIMKEQSPKRLYQ+RGKLYELLVNCIPPEIILKRLLYELLKKLDA
Sbjct: 257 IPPMDWEEYISEIASDIMKEQSPKRLYQVRGKLYELLVNCIPPEIILKRLLYELLKKLDA 316

Query: 251 ELKHEVCHWAAYYEHRMRLGQKSIFHIE 275
           ELKHEVCHWAAYYEHRMRLGQKSIFHIE
Sbjct: 317 ELKHEVCHWAAYYEHRMRLGQKSIFHIE 335

[Close]

BLAST of Cp4.1LG10g10960 vs. ExPASy TrEMBL
Match: A0A1S3B4A5 (replication factor C subunit 3 OS=Cucumis melo OX=3656 GN=LOC103486020 PE=4 SV=1)

HSP 1 Score: 372 bits (954), Expect = 9.25e-125
Identity = 195/268 (72.76%), Postives = 223/268 (83.21%), Query Frame = 0


Query: 11  AGTRNVEIELTTISSTNHVELTPSDAGFQDRYIVQEIIKDMAKNRPIDSKGKRGHKGKML 70
           AGTR ++IELTT+SS NHVELTPSDAGFQDRYIVQEIIK+MAKNRPIDSKGKRGHK  +L
Sbjct: 77  AGTRTIDIELTTLSSANHVELTPSDAGFQDRYIVQEIIKEMAKNRPIDSKGKRGHKVLVL 136

Query: 71  WVDKYRPKTLDQITVHQDVAQNLKKLVTEQDCPHLLFFGPSGSGKKTLVM---ALIRQMF 130
                    +D+++  ++   +L++ + +      L    + S + T  +    L  ++ 
Sbjct: 137 -------NDVDKLS--REAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSRCLNVRIN 196

Query: 131 GASAEKIVKVLEFIGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQQYPFVSNQA 190
           G + E+IVKVLEFIGKKEGLQLPSGFASRIAEKS+RSLRRAILSFETCRVQQYPFV NQA
Sbjct: 197 GPTEEQIVKVLEFIGKKEGLQLPSGFASRIAEKSSRSLRRAILSFETCRVQQYPFVGNQA 256

Query: 191 IPPMDWEEYISEIASDIMKEQSPKRLYQIRGKLYELLVNCIPPEIILKRLLYELLKKLDA 250
           IPPMDWEEYI+EIASDIMKEQSPKRL+Q+RGKLYELLVNCIPPEIILKRLLYELLKKLDA
Sbjct: 257 IPPMDWEEYITEIASDIMKEQSPKRLFQVRGKLYELLVNCIPPEIILKRLLYELLKKLDA 316

Query: 251 ELKHEVCHWAAYYEHRMRLGQKSIFHIE 275
           ELKHEVCHWAAYYEHRMRLGQK+IFHIE
Sbjct: 317 ELKHEVCHWAAYYEHRMRLGQKAIFHIE 335

[Close]

BLAST of Cp4.1LG10g10960 vs. ExPASy TrEMBL
Match: A0A5D3C0B6 (Replication factor C subunit 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold83G00180 PE=4 SV=1)

HSP 1 Score: 372 bits (954), Expect = 9.25e-125
Identity = 195/268 (72.76%), Postives = 223/268 (83.21%), Query Frame = 0


Query: 11  AGTRNVEIELTTISSTNHVELTPSDAGFQDRYIVQEIIKDMAKNRPIDSKGKRGHKGKML 70
           AGTR ++IELTT+SS NHVELTPSDAGFQDRYIVQEIIK+MAKNRPIDSKGKRGHK  +L
Sbjct: 77  AGTRTIDIELTTLSSANHVELTPSDAGFQDRYIVQEIIKEMAKNRPIDSKGKRGHKVLVL 136

Query: 71  WVDKYRPKTLDQITVHQDVAQNLKKLVTEQDCPHLLFFGPSGSGKKTLVM---ALIRQMF 130
                    +D+++  ++   +L++ + +      L    + S + T  +    L  ++ 
Sbjct: 137 -------NDVDKLS--REAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSRCLNVRIN 196

Query: 131 GASAEKIVKVLEFIGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQQYPFVSNQA 190
           G + E+IVKVLEFIGKKEGLQLPSGFASRIAEKS+RSLRRAILSFETCRVQQYPFV NQA
Sbjct: 197 GPTEEQIVKVLEFIGKKEGLQLPSGFASRIAEKSSRSLRRAILSFETCRVQQYPFVGNQA 256

Query: 191 IPPMDWEEYISEIASDIMKEQSPKRLYQIRGKLYELLVNCIPPEIILKRLLYELLKKLDA 250
           IPPMDWEEYI+EIASDIMKEQSPKRL+Q+RGKLYELLVNCIPPEIILKRLLYELLKKLDA
Sbjct: 257 IPPMDWEEYITEIASDIMKEQSPKRLFQVRGKLYELLVNCIPPEIILKRLLYELLKKLDA 316

Query: 251 ELKHEVCHWAAYYEHRMRLGQKSIFHIE 275
           ELKHEVCHWAAYYEHRMRLGQK+IFHIE
Sbjct: 317 ELKHEVCHWAAYYEHRMRLGQKAIFHIE 335

[Close]

BLAST of Cp4.1LG10g10960 vs. ExPASy TrEMBL
Match: A0A6J1GFZ3 (replication factor C subunit 3 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111453820 PE=4 SV=1)

HSP 1 Score: 372 bits (955), Expect = 1.46e-124
Identity = 205/292 (70.21%), Postives = 226/292 (77.40%), Query Frame = 0


Query: 11  AGTRNVEIELTTISSTNHVELTPSDAGFQDRYIVQEIIKDMAKNRPIDSKGKRGHKGKML 70
           AGTRNVEIELTTISSTNHVELTPSDAGFQDRYIVQEIIKDMAKNRPIDSKGKRGHK  +L
Sbjct: 77  AGTRNVEIELTTISSTNHVELTPSDAGFQDRYIVQEIIKDMAKNRPIDSKGKRGHKVLVL 136

Query: 71  WVDKYRPKTLDQITVHQDVAQNLKKLVTEQDCPHLLFFGPSGSGKKTLVM---ALIRQMF 130
                    +D+++  ++   +L++ + +      L    + S + T  +    L  ++ 
Sbjct: 137 -------NDVDKLS--REAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSRCLNVRIN 196

Query: 131 GASAEKIVKVLEFIGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQQYPFVSNQA 190
           G + ++IVKVLEFIGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQQYPFVSNQA
Sbjct: 197 GPTDDQIVKVLEFIGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQQYPFVSNQA 256

Query: 191 IPPMDWEEYISEIASDIMKEQSPKRLYQIRGKLYELLVNCIPPEIILK------------ 250
           IPPMDWEEYISEIASDIMKEQSPKRLYQ+RGKLYELLVNCIPPEIILK            
Sbjct: 257 IPPMDWEEYISEIASDIMKEQSPKRLYQVRGKLYELLVNCIPPEIILKVIILSQFLLIFS 316

Query: 251 ------------RLLYELLKKLDAELKHEVCHWAAYYEHRMRLGQKSIFHIE 275
                       RLLYELLKKLDAELKHEVCHWAAYYEHRMRLGQKSIFHIE
Sbjct: 317 VLMCDLYYLVSQRLLYELLKKLDAELKHEVCHWAAYYEHRMRLGQKSIFHIE 359

[Close]

BLAST of Cp4.1LG10g10960 vs. TAIR 10
Match: AT5G27740.1 (ATPase family associated with various cellular activities (AAA) )

HSP 1 Score: 340.9 bits (873), Expect = 1.2e-93
Identity = 176/269 (65.43%), Postives = 213/269 (79.18%), Query Frame = 0


Query: 11  AGTRNVEIELTTISSTNHVELTPSDAGFQDRYIVQEIIKDMAKNRPIDSKGKRGHKGKML 70
           AG+R +++ELTT+SSTNHVELTPSDAGFQDRYIVQEIIK+MAKNRPID+KGK+G+K  +L
Sbjct: 77  AGSRTIDLELTTLSSTNHVELTPSDAGFQDRYIVQEIIKEMAKNRPIDTKGKKGYKVLVL 136

Query: 71  -WVDKYRPKTLDQITVHQDVAQNLKKLVTEQDCPHLLFFGPSGSGKKTLVM---ALIRQM 130
             VDK          + ++   +L++ + +      L    + S K T  +    L  ++
Sbjct: 137 NEVDK----------LSREAQHSLRRTMEKYSSSCRLILCCNSSSKVTEAIKSRCLNVRI 196

Query: 131 FGASAEKIVKVLEFIGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQQYPFVSNQ 190
              S E+IVKVLEF+ KKE LQLP GFA+RIAEKSNRSLRRAILS ETCRVQ YPF  NQ
Sbjct: 197 NAPSQEEIVKVLEFVAKKESLQLPQGFAARIAEKSNRSLRRAILSLETCRVQNYPFTGNQ 256

Query: 191 AIPPMDWEEYISEIASDIMKEQSPKRLYQIRGKLYELLVNCIPPEIILKRLLYELLKKLD 250
            I PMDWEEY++EIA+D+MKEQSPK+L+Q+RGK+YELLVNCIPPE+ILKRLL+ELLKKLD
Sbjct: 257 VISPMDWEEYVAEIATDMMKEQSPKKLFQVRGKVYELLVNCIPPEVILKRLLHELLKKLD 316

Query: 251 AELKHEVCHWAAYYEHRMRLGQKSIFHIE 276
           +ELK EVCHWAAYYEHRMRLGQK+IFHIE
Sbjct: 317 SELKLEVCHWAAYYEHRMRLGQKAIFHIE 335

[Close]

BLAST of Cp4.1LG10g10960 vs. TAIR 10
Match: AT1G77470.1 (replication factor C subunit 3 )

HSP 1 Score: 68.9 bits (167), Expect = 9.0e-12
Identity = 24/65 (36.92%), Postives = 43/65 (66.15%), Query Frame = 0


Query: 71  WVDKYRPKTLDQITVHQDVAQNLKKLVTEQDCPHLLFFGPSGSGKKTLVMALIRQMFGAS 130
           WV+KYRP++LD +  H+D+   + +L  E   PHLL +GP G+GK + ++A+ R+++G  
Sbjct: 41  WVEKYRPQSLDDVAAHRDIIDTIDRLTNENKLPHLLLYGPPGTGKTSTILAVARKLYGPK 100

Query: 131 AEKIV 136
              ++
Sbjct: 101 YRNMI 105

[Close]

BLAST of Cp4.1LG10g10960 vs. TAIR 10
Match: AT1G21690.1 (ATPase family associated with various cellular activities (AAA) )

HSP 1 Score: 65.9 bits (159), Expect = 7.6e-11
Identity = 29/69 (42.03%), Postives = 43/69 (62.32%), Query Frame = 0


Query: 71  WVDKYRPKTLDQITVHQDVAQNLKKLVTEQDCPHLLFFGPSGSGKKTLVMALIRQMFGAS 130
           WV+KYRPK +  +   ++V + L   +   DCPH+LF+GP G+GK T  +A+  Q+FG  
Sbjct: 11  WVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTALAIAHQLFGPE 70

Query: 131 AEKIVKVLE 140
             K  +VLE
Sbjct: 71  LYK-SRVLE 78

[Close]

BLAST of Cp4.1LG10g10960 vs. TAIR 10
Match: AT1G21690.3 (ATPase family associated with various cellular activities (AAA) )

HSP 1 Score: 65.9 bits (159), Expect = 7.6e-11
Identity = 29/69 (42.03%), Postives = 43/69 (62.32%), Query Frame = 0


Query: 71  WVDKYRPKTLDQITVHQDVAQNLKKLVTEQDCPHLLFFGPSGSGKKTLVMALIRQMFGAS 130
           WV+KYRPK +  +   ++V + L   +   DCPH+LF+GP G+GK T  +A+  Q+FG  
Sbjct: 11  WVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTALAIAHQLFGPE 70

Query: 131 AEKIVKVLE 140
             K  +VLE
Sbjct: 71  LYK-SRVLE 78

[Close]

BLAST of Cp4.1LG10g10960 vs. TAIR 10
Match: AT1G21690.4 (ATPase family associated with various cellular activities (AAA) )

HSP 1 Score: 65.5 bits (158), Expect = 1.0e-10
Identity = 25/58 (43.10%), Postives = 38/58 (65.52%), Query Frame = 0


Query: 71  WVDKYRPKTLDQITVHQDVAQNLKKLVTEQDCPHLLFFGPSGSGKKTLVMALIRQMFG 129
           WV+KYRPK +  +   ++V + L   +   DCPH+LF+GP G+GK T  +A+  Q+FG
Sbjct: 11  WVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTALAIAHQLFG 68

The following BLAST results are available for this feature:

BLAST of Cp4.1LG10g10960 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8VXX4	1.7e-92	65.43	Replication factor C subunit 3 OS=Arabidopsis thaliana OX=3702 GN=RFC3 PE=2 SV=1	[more]
Q852K3	1.0e-84	60.07	Replication factor C subunit 5 OS=Oryza sativa subsp. japonica OX=39947 GN=RFC5 ...	[more]
P40938	5.1e-52	43.13	Replication factor C subunit 3 OS=Homo sapiens OX=9606 GN=RFC3 PE=1 SV=2	[more]
Q8R323	1.5e-51	42.75	Replication factor C subunit 3 OS=Mus musculus OX=10090 GN=Rfc3 PE=1 SV=1	[more]
Q2TBV1	4.3e-51	42.37	Replication factor C subunit 3 OS=Bos taurus OX=9913 GN=RFC3 PE=2 SV=1	[more]

BLAST of Cp4.1LG10g10960 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038877712.1	1.69e-134	72.79	replication factor C subunit 3 [Benincasa hispida]	[more]
XP_022950838.1	6.63e-130	76.49	replication factor C subunit 3 isoform X2 [Cucurbita moschata]	[more]
XP_022978217.1	6.63e-130	76.49	replication factor C subunit 3 [Cucurbita maxima]	[more]
KAG6603461.1	1.03e-129	76.49	Replication factor C subunit 3, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_008442036.1	1.91e-124	72.76	PREDICTED: replication factor C subunit 3 [Cucumis melo] >XP_008442037.1 PREDICT...	[more]

BLAST of Cp4.1LG10g10960 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IKJ1	3.21e-130	76.49	replication factor C subunit 3 OS=Cucurbita maxima OX=3661 GN=LOC111478265 PE=4 ...	[more]
A0A6J1GG01	3.21e-130	76.49	replication factor C subunit 3 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC11...	[more]
A0A1S3B4A5	9.25e-125	72.76	replication factor C subunit 3 OS=Cucumis melo OX=3656 GN=LOC103486020 PE=4 SV=1	[more]
A0A5D3C0B6	9.25e-125	72.76	Replication factor C subunit 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A6J1GFZ3	1.46e-124	70.21	replication factor C subunit 3 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC11...	[more]

BLAST of Cp4.1LG10g10960 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G27740.1	1.2e-93	65.43	ATPase family associated with various cellular activities (AAA)	[more]
AT1G77470.1	9.0e-12	36.92	replication factor C subunit 3	[more]
AT1G21690.1	7.6e-11	42.03	ATPase family associated with various cellular activities (AAA)	[more]
AT1G21690.3	7.6e-11	42.03	ATPase family associated with various cellular activities (AAA)	[more]
AT1G21690.4	1.0e-10	43.10	ATPase family associated with various cellular activities (AAA)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.20.272.10		coord: 192..282 e-value: 5.4E-34 score: 118.3
None	No IPR available	PFAM	PF03215	Rad17	coord: 68..126 e-value: 4.0E-7 score: 30.2
None	No IPR available	PANTHER	PTHR11669:SF1	REPLICATION FACTOR C SUBUNIT 3	coord: 70..129
None	No IPR available	PANTHER	PTHR11669	REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT	coord: 70..129 coord: 8..64 coord: 130..276
None	No IPR available	PANTHER	PTHR11669:SF1	REPLICATION FACTOR C SUBUNIT 3	coord: 8..64 coord: 130..276
None	No IPR available	CDD	cd00009	AAA	coord: 87..131 e-value: 5.93986E-4 score: 37.8959
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 62..171 e-value: 6.5E-18 score: 67.0
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 71..140
IPR008921	DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal	SUPERFAMILY	48019	post-AAA+ oligomerization domain-like	coord: 191..276

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG10g10960.1	Cp4.1LG10g10960.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006261	DNA-dependent DNA replication
biological_process	GO:0006281	DNA repair
biological_process	GO:0006260	DNA replication
cellular_component	GO:0005663	DNA replication factor C complex
cellular_component	GO:0016020	membrane
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003689	DNA clamp loader activity