Cp4.1LG10g10910 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG10g10910
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG10: 6510302 .. 6510939 (+)
RNA-Seq ExpressionCp4.1LG10g10910
SyntenyCp4.1LG10g10910
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAGCGAAATAATTTTGCTCTCTTTTTCTCGGGGTAGAAAATTCGAACTTCAAAACTCAAAAGCTCCCCCAAAGGACAAACAGAGAAACTCCCGCATGTTCAAGCGGAGAGGTTTTGAAGATTTCGGAGTGTGTAAATCGCCGCGAATCTGGTTAGATTTTGAGTTTTGTTTCGACTTATGGCTTCTAGATTTTCGTCTGTTCTTCGCCTTTNCCGCATCTCCAAAAGAAAGTATTTAATTTGTTATTATATTTTTGCATTTCCATGTTTTCCCTGTTTCGAAAGTAGGGTTTTCCCTCTCTTTTTGTTTCATTTTGATTTTGTGTTGCGTGGATCATGAGATTGTTTTGTTTTTGTGTTTCCGTTTGCTTGTGTGTTAGGAAGAACATTAAGGGTAATAGAAGGAAGCTGGGCAGTTTTTCAATTGATTGCGTATTTTTTCAGTGTCGAGTAGCTATCATTTCCGCTTTATTTTGCTTTTGGAGTGTAAATACGATTCTGACCGTTTGGAGTTGAAGTATAATCACAAAGGTTTTTGGAATAAGAGCTTGGCTATACAAGAAAAAGATTCTCTGGTTGCATTTTATCGAAGATTTTGGCCTTGTTTTTTGAAGTTAAGAGCTGCAAACAGGGATTGA

mRNA sequence

GAAGCGAAATAATTTTGCTCTCTTTTTCTCGGGGTAGAAAATTCGAACTTCAAAACTCAAAAGCTCCCCCAAAGGACAAACAGAGAAACTCCCGCATGTTCAAGCGGAGAGGTTTTGAAGATTTCGGAGTGTGTAAATCGCCGCGAATCTGCTATCATTTCCGCTTTATTTTGCTTTTGGAGTGTAAATACGATTCTGACCGTTTGGAGTTGAAGTATAATCACAAAGGTTTTTGGAATAAGAGCTTGGCTATACAAGAAAAAGATTCTCTGGTTGCATTTTATCGAAGATTTTGGCCTTGTTTTTTGAAGTTAAGAGCTGCAAACAGGGATTGA

Coding sequence (CDS)

ATGTTCAAGCGGAGAGGTTTTGAAGATTTCGGAGTGTGTAAATCGCCGCGAATCTGCTATCATTTCCGCTTTATTTTGCTTTTGGAGTGTAAATACGATTCTGACCGTTTGGAGTTGAAGTATAATCACAAAGGTTTTTGGAATAAGAGCTTGGCTATACAAGAAAAAGATTCTCTGGTTGCATTTTATCGAAGATTTTGGCCTTGTTTTTTGAAGTTAAGAGCTGCAAACAGGGATTGA

Protein sequence

MFKRRGFEDFGVCKSPRICYHFRFILLLECKYDSDRLELKYNHKGFWNKSLAIQEKDSLVAFYRRFWPCFLKLRAANRD
Homology
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BLAST of Cp4.1LG10g10910 vs. NCBI nr
Match: KAG7033635.1 (hypothetical protein SDJN02_03359, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 89.7 bits (221), Expect = 2.59e-21
Identity = 43/54 (79.63%), Postives = 43/54 (79.63%), Query Frame = 0 

Query: 1  MFKRRGFEDFGVCKSPRI--------CYHFRFILLLECKYDSDRLELKYNHKGF 46
          MFKR GFEDFGVCKSPRI         YHFRFILL ECKYDSDRLELKYNHKGF
Sbjct: 33 MFKRSGFEDFGVCKSPRIWKNIKVSSSYHFRFILLSECKYDSDRLELKYNHKGF 86

The following BLAST results are available for this feature:
BLAST of Cp4.1LG10g10910 vs.
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG10g10910 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7033635.12.59e-2179.63hypothetical protein SDJN02_03359, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Cp4.1LG10g10910 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG10g10910 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG10g10910.1Cp4.1LG10g10910.1mRNA