Cp4.1LG10g09660 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG10g09660
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	SPARK domain-containing protein
Location	Cp4.1LG10: 4481880 .. 4482254 (+)
RNA-Seq Expression	Cp4.1LG10g09660
Synteny	Cp4.1LG10g09660

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTAACTGTTGCAGAGGTCAATCCTCCACCCCGGTGGTGTCGGGTGGCGATCGGAGGGCTCTGCCGCCGAAGAACCTCAGTCAGAGAAGGCATGGAGCTAATTCTTGTTCTACTACGATCAAGGGTTCAAAAGAGGGTAATCTGAGAGAGTTGAAAATAAGAATGACGAAAAAGGAGCTGAAGGAATTGGTTGGATGGTTGAACATGGCGGACTCGAGTTTTGAACAAGTTATGGCTCGTCTTGTGAACGTTATTAGCGAGCACAATGGTGATGATAGTGAAGAAGATGATAGGAATATTGGGCAGATGGTGAAATTGCGTCAGCAACGTTCATGGAGGCCTTCTCTGCAGAGCATTCCTGAGATAATCTGA

mRNA sequence

ATGGGTAACTGTTGCAGAGGTCAATCCTCCACCCCGGTGGTGTCGGGTGGCGATCGGAGGGCTCTGCCGCCGAAGAACCTCAGTCAGAGAAGGCATGGAGCTAATTCTTGTTCTACTACGATCAAGGGTTCAAAAGAGGGTAATCTGAGAGAGTTGAAAATAAGAATGACGAAAAAGGAGCTGAAGGAATTGGTTGGATGGTTGAACATGGCGGACTCGAGTTTTGAACAAGTTATGGCTCGTCTTGTGAACGTTATTAGCGAGCACAATGGTGATGATAGTGAAGAAGATGATAGGAATATTGGGCAGATGGTGAAATTGCGTCAGCAACGTTCATGGAGGCCTTCTCTGCAGAGCATTCCTGAGATAATCTGA

Coding sequence (CDS)

ATGGGTAACTGTTGCAGAGGTCAATCCTCCACCCCGGTGGTGTCGGGTGGCGATCGGAGGGCTCTGCCGCCGAAGAACCTCAGTCAGAGAAGGCATGGAGCTAATTCTTGTTCTACTACGATCAAGGGTTCAAAAGAGGGTAATCTGAGAGAGTTGAAAATAAGAATGACGAAAAAGGAGCTGAAGGAATTGGTTGGATGGTTGAACATGGCGGACTCGAGTTTTGAACAAGTTATGGCTCGTCTTGTGAACGTTATTAGCGAGCACAATGGTGATGATAGTGAAGAAGATGATAGGAATATTGGGCAGATGGTGAAATTGCGTCAGCAACGTTCATGGAGGCCTTCTCTGCAGAGCATTCCTGAGATAATCTGA

Protein sequence

MGNCCRGQSSTPVVSGGDRRALPPKNLSQRRHGANSCSTTIKGSKEGNLRELKIRMTKKELKELVGWLNMADSSFEQVMARLVNVISEHNGDDSEEDDRNIGQMVKLRQQRSWRPSLQSIPEII

Homology

[Close]

BLAST of Cp4.1LG10g09660 vs. NCBI nr
Match: XP_023544016.1 (uncharacterized protein LOC111803724 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 247 bits (630), Expect = 2.06e-82
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 0


Query: 1   MGNCCRGQSSTPVVSGGDRRALPPKNLSQRRHGANSCSTTIKGSKEGNLRELKIRMTKKE 60
           MGNCCRGQSSTPVVSGGDRRALPPKNLSQRRHGANSCSTTIKGSKEGNLRELKIRMTKKE
Sbjct: 1   MGNCCRGQSSTPVVSGGDRRALPPKNLSQRRHGANSCSTTIKGSKEGNLRELKIRMTKKE 60

Query: 61  LKELVGWLNMADSSFEQVMARLVNVISEHNGDDSEEDDRNIGQMVKLRQQRSWRPSLQSI 120
           LKELVGWLNMADSSFEQVMARLVNVISEHNGDDSEEDDRNIGQMVKLRQQRSWRPSLQSI
Sbjct: 61  LKELVGWLNMADSSFEQVMARLVNVISEHNGDDSEEDDRNIGQMVKLRQQRSWRPSLQSI 120

Query: 121 PEII 124
           PEII
Sbjct: 121 PEII 124

[Close]

BLAST of Cp4.1LG10g09660 vs. NCBI nr
Match: XP_022977330.1 (uncharacterized protein LOC111477681 [Cucurbita maxima])

HSP 1 Score: 234 bits (596), Expect = 3.17e-77
Identity = 117/124 (94.35%), Postives = 119/124 (95.97%), Query Frame = 0


Query: 1   MGNCCRGQSSTPVVSGGDRRALPPKNLSQRRHGANSCSTTIKGSKEGNLRELKIRMTKKE 60
           MGNCCRGQSSTPVVSGGDRRA PPKNL QRRHGA SCSTTIKGSKEGNLRELKIRMTKKE
Sbjct: 1   MGNCCRGQSSTPVVSGGDRRAQPPKNLRQRRHGAGSCSTTIKGSKEGNLRELKIRMTKKE 60

Query: 61  LKELVGWLNMADSSFEQVMARLVNVISEHNGDDSEEDDRNIGQMVKLRQQRSWRPSLQSI 120
           LKEL+GWLNMADSSFEQVMARLVNVIS+ NGDDSEEDD NIGQMVKLRQQRSWRPSLQSI
Sbjct: 61  LKELIGWLNMADSSFEQVMARLVNVISDQNGDDSEEDDENIGQMVKLRQQRSWRPSLQSI 120

Query: 121 PEII 124
           PEII
Sbjct: 121 PEII 124

[Close]

BLAST of Cp4.1LG10g09660 vs. NCBI nr
Match: KAG7033944.1 (hypothetical protein SDJN02_03670, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 233 bits (594), Expect = 6.39e-77
Identity = 117/124 (94.35%), Postives = 121/124 (97.58%), Query Frame = 0


Query: 1   MGNCCRGQSSTPVVSGGDRRALPPKNLSQRRHGANSCSTTIKGSKEGNLRELKIRMTKKE 60
           MGNCCRGQSSTPVVSG +RRALPPKN+ QRRHGA+SCSTTIKGSKEGN+RELKIRMTKKE
Sbjct: 1   MGNCCRGQSSTPVVSGRNRRALPPKNVRQRRHGASSCSTTIKGSKEGNMRELKIRMTKKE 60

Query: 61  LKELVGWLNMADSSFEQVMARLVNVISEHNGDDSEEDDRNIGQMVKLRQQRSWRPSLQSI 120
           LKELVGWLNMADSSFEQVMARLVNVISE NGDDSEEDDRNIGQMVKLRQQRSWRPSLQSI
Sbjct: 61  LKELVGWLNMADSSFEQVMARLVNVISEQNGDDSEEDDRNIGQMVKLRQQRSWRPSLQSI 120

Query: 121 PEII 124
           PEII
Sbjct: 121 PEII 124

[Close]

BLAST of Cp4.1LG10g09660 vs. NCBI nr
Match: KAG6603773.1 (hypothetical protein SDJN03_04382, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 231 bits (590), Expect = 2.60e-76
Identity = 116/124 (93.55%), Postives = 121/124 (97.58%), Query Frame = 0


Query: 1   MGNCCRGQSSTPVVSGGDRRALPPKNLSQRRHGANSCSTTIKGSKEGNLRELKIRMTKKE 60
           MGNCCRGQSSTPVVSG +RRALPPKN+ QRRHGA+SCSTTIKGSKEGN+RELKIRMTKKE
Sbjct: 1   MGNCCRGQSSTPVVSGRNRRALPPKNVRQRRHGASSCSTTIKGSKEGNMRELKIRMTKKE 60

Query: 61  LKELVGWLNMADSSFEQVMARLVNVISEHNGDDSEEDDRNIGQMVKLRQQRSWRPSLQSI 120
           LKELVGWLNMADSSFEQVMARLVNVISE NGDDSEE+DRNIGQMVKLRQQRSWRPSLQSI
Sbjct: 61  LKELVGWLNMADSSFEQVMARLVNVISEQNGDDSEEEDRNIGQMVKLRQQRSWRPSLQSI 120

Query: 121 PEII 124
           PEII
Sbjct: 121 PEII 124

[Close]

BLAST of Cp4.1LG10g09660 vs. NCBI nr
Match: XP_008441100.1 (PREDICTED: uncharacterized protein LOC103485326 [Cucumis melo] >TYK13052.1 hypothetical protein E5676_scaffold255G006540 [Cucumis melo var. makuwa])

HSP 1 Score: 155 bits (391), Expect = 4.06e-46
Identity = 87/126 (69.05%), Postives = 95/126 (75.40%), Query Frame = 0


Query: 1   MGNCCRGQSSTPVVSGGDRRALPPKNLSQRRH--GANSCSTTIKGSKEGNLRELKIRMTK 60
           MGNCC+GQ STPV    DRR  P KN  QRRH  G++ CS      KE NLRE+KIRMTK
Sbjct: 1   MGNCCKGQYSTPVTGCSDRRTPPLKNHRQRRHEEGSSCCS------KETNLREVKIRMTK 60

Query: 61  KELKELVGWLNMADSSFEQVMARLVNVISEHNGDDSEEDDRNIGQMVKLRQQRSWRPSLQ 120
           KEL+ELVGWLNMADSSFE VMARLVNVI++ NG      D N  Q+VKLRQQRSWRPSLQ
Sbjct: 61  KELEELVGWLNMADSSFEHVMARLVNVINDQNG------DNNNDQVVKLRQQRSWRPSLQ 114

Query: 121 SIPEII 124
           SIPEII
Sbjct: 121 SIPEII 114

[Close]

BLAST of Cp4.1LG10g09660 vs. ExPASy TrEMBL
Match: A0A6J1IM02 (uncharacterized protein LOC111477681 OS=Cucurbita maxima OX=3661 GN=LOC111477681 PE=4 SV=1)

HSP 1 Score: 234 bits (596), Expect = 1.53e-77
Identity = 117/124 (94.35%), Postives = 119/124 (95.97%), Query Frame = 0


Query: 1   MGNCCRGQSSTPVVSGGDRRALPPKNLSQRRHGANSCSTTIKGSKEGNLRELKIRMTKKE 60
           MGNCCRGQSSTPVVSGGDRRA PPKNL QRRHGA SCSTTIKGSKEGNLRELKIRMTKKE
Sbjct: 1   MGNCCRGQSSTPVVSGGDRRAQPPKNLRQRRHGAGSCSTTIKGSKEGNLRELKIRMTKKE 60

Query: 61  LKELVGWLNMADSSFEQVMARLVNVISEHNGDDSEEDDRNIGQMVKLRQQRSWRPSLQSI 120
           LKEL+GWLNMADSSFEQVMARLVNVIS+ NGDDSEEDD NIGQMVKLRQQRSWRPSLQSI
Sbjct: 61  LKELIGWLNMADSSFEQVMARLVNVISDQNGDDSEEDDENIGQMVKLRQQRSWRPSLQSI 120

Query: 121 PEII 124
           PEII
Sbjct: 121 PEII 124

[Close]

BLAST of Cp4.1LG10g09660 vs. ExPASy TrEMBL
Match: A0A5D3CNX5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G006540 PE=4 SV=1)

HSP 1 Score: 155 bits (391), Expect = 1.97e-46
Identity = 87/126 (69.05%), Postives = 95/126 (75.40%), Query Frame = 0


Query: 1   MGNCCRGQSSTPVVSGGDRRALPPKNLSQRRH--GANSCSTTIKGSKEGNLRELKIRMTK 60
           MGNCC+GQ STPV    DRR  P KN  QRRH  G++ CS      KE NLRE+KIRMTK
Sbjct: 1   MGNCCKGQYSTPVTGCSDRRTPPLKNHRQRRHEEGSSCCS------KETNLREVKIRMTK 60

Query: 61  KELKELVGWLNMADSSFEQVMARLVNVISEHNGDDSEEDDRNIGQMVKLRQQRSWRPSLQ 120
           KEL+ELVGWLNMADSSFE VMARLVNVI++ NG      D N  Q+VKLRQQRSWRPSLQ
Sbjct: 61  KELEELVGWLNMADSSFEHVMARLVNVINDQNG------DNNNDQVVKLRQQRSWRPSLQ 114

Query: 121 SIPEII 124
           SIPEII
Sbjct: 121 SIPEII 114

[Close]

BLAST of Cp4.1LG10g09660 vs. ExPASy TrEMBL
Match: A0A1S3B2N5 (uncharacterized protein LOC103485326 OS=Cucumis melo OX=3656 GN=LOC103485326 PE=4 SV=1)

HSP 1 Score: 155 bits (391), Expect = 1.97e-46
Identity = 87/126 (69.05%), Postives = 95/126 (75.40%), Query Frame = 0


Query: 1   MGNCCRGQSSTPVVSGGDRRALPPKNLSQRRH--GANSCSTTIKGSKEGNLRELKIRMTK 60
           MGNCC+GQ STPV    DRR  P KN  QRRH  G++ CS      KE NLRE+KIRMTK
Sbjct: 1   MGNCCKGQYSTPVTGCSDRRTPPLKNHRQRRHEEGSSCCS------KETNLREVKIRMTK 60

Query: 61  KELKELVGWLNMADSSFEQVMARLVNVISEHNGDDSEEDDRNIGQMVKLRQQRSWRPSLQ 120
           KEL+ELVGWLNMADSSFE VMARLVNVI++ NG      D N  Q+VKLRQQRSWRPSLQ
Sbjct: 61  KELEELVGWLNMADSSFEHVMARLVNVINDQNG------DNNNDQVVKLRQQRSWRPSLQ 114

Query: 121 SIPEII 124
           SIPEII
Sbjct: 121 SIPEII 114

[Close]

BLAST of Cp4.1LG10g09660 vs. ExPASy TrEMBL
Match: A0A0A0KHU7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G514300 PE=4 SV=1)

HSP 1 Score: 146 bits (368), Expect = 5.69e-43
Identity = 83/124 (66.94%), Postives = 91/124 (73.39%), Query Frame = 0


Query: 1   MGNCCRGQSSTPVVSGGDRRALPPKNLSQRRHGANSCSTTIKGSKEGNLRELKIRMTKKE 60
           MGNCC+ QSSTPV+ G      P KN  QRR+   S       SKE NLRE+KIRMTKKE
Sbjct: 1   MGNCCKAQSSTPVMEGSHPTTPPFKNHPQRRNQEGS-------SKETNLREVKIRMTKKE 60

Query: 61  LKELVGWLNMADSSFEQVMARLVNVISEHNGDDSEEDDRNIGQMVKLRQQRSWRPSLQSI 120
           L+ELVGWLNMADSSFEQVMARLVNVI+  NG      D N  Q+VKLRQQRSWRPSLQSI
Sbjct: 61  LQELVGWLNMADSSFEQVMARLVNVINYQNG------DNNNDQVVKLRQQRSWRPSLQSI 111

Query: 121 PEII 124
           PE+I
Sbjct: 121 PEMI 111

[Close]

BLAST of Cp4.1LG10g09660 vs. ExPASy TrEMBL
Match: A0A059CAC2 (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_E04063 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 3.75e-12
Identity = 45/125 (36.00%), Postives = 69/125 (55.20%), Query Frame = 0


Query: 1   MGNCCRGQSSTPVV-SGGDRRALPPKNLSQRRHGANSCSTTIKGSKEGNLRELKIRMTKK 60
           MGNCCR +SS+  + +G D  +LP     ++R   ++    +  S     RE+KI+++K+
Sbjct: 1   MGNCCRAESSSSTIWAGDDWNSLPCDGEGKKRLLDDADGKKVSSSSSSRRREIKIQISKE 60

Query: 61  ELKELVGWLNMADSSFEQVMARLVNVISEHNGDDSEEDDRNIGQMVKLRQQRSWRPSLQS 120
           EL++LV  +     S EQV+  L+N        ++  D R  G   K  + RSWRP+LQS
Sbjct: 61  ELEKLVHKIEAQGLSLEQVLPLLIN--------ENTFDRRGSG-FTKYGRHRSWRPALQS 116

Query: 121 IPEII 124
           IPE I
Sbjct: 121 IPEAI 116

[Close]

BLAST of Cp4.1LG10g09660 vs. TAIR 10
Match: AT4G21920.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G20340.1); Has 40 Blast hits to 40 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 44.7 bits (104), Expect = 6.4e-05
Identity = 36/137 (26.28%), Postives = 62/137 (45.26%), Query Frame = 0


Query: 1   MGNC-CRGQSSTPVVSGGDRRALPPKNLSQRRH-------------GANSCSTTIKGSKE 60
           MGNC C  + +T   SG D  +   +   +R               G  S  T+   S  
Sbjct: 1   MGNCICVTEKTTTSWSGDDNGSYNKRRRRRRSTVVHDDNDDGEKLLGETSNVTSTSSSSS 60

Query: 61  GNLRELKIRMTKKELKELVGWLNMADSSFEQVMARLVNVISEHNGDDSEEDDRNIGQMVK 120
              RE+KIR+TKKEL++L+  + +   + E+++++L+    +  G  + +          
Sbjct: 61  SERREIKIRITKKELEDLMRNIGLKSLTAEEILSKLIFEGGDQIGFSAVD---------V 120

Query: 121 LRQQRSWRPSLQSIPEI 124
               + W+P LQSIPE+
Sbjct: 121 TNHHQPWKPVLQSIPEM 128

[Close]

BLAST of Cp4.1LG10g09660 vs. TAIR 10
Match: AT3G20340.1 (Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress. )

HSP 1 Score: 42.4 bits (98), Expect = 3.2e-04
Identity = 25/73 (34.25%), Postives = 41/73 (56.16%), Query Frame = 0


Query: 51  ELKIRMTKKELKELVGWLNMADSSFEQVMARLVNVISEHNGDDSEEDDRNIGQMVKLRQQ 110
           E+KIR+TKK+L +L+  +N+ D +F+Q       +++    +++              QQ
Sbjct: 56  EIKIRLTKKQLHDLLSKVNVHDLTFQQ-QTFSCPILNNRGYEEA-------------NQQ 114

Query: 111 RSWRPSLQSIPEI 124
           R WRP LQSIPE+
Sbjct: 116 RLWRPVLQSIPEV 114

The following BLAST results are available for this feature:

BLAST of Cp4.1LG10g09660 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG10g09660 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023544016.1	2.06e-82	100.00	uncharacterized protein LOC111803724 [Cucurbita pepo subsp. pepo]	[more]
XP_022977330.1	3.17e-77	94.35	uncharacterized protein LOC111477681 [Cucurbita maxima]	[more]
KAG7033944.1	6.39e-77	94.35	hypothetical protein SDJN02_03670, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6603773.1	2.60e-76	93.55	hypothetical protein SDJN03_04382, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_008441100.1	4.06e-46	69.05	PREDICTED: uncharacterized protein LOC103485326 [Cucumis melo] >TYK13052.1 hypot...	[more]

BLAST of Cp4.1LG10g09660 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IM02	1.53e-77	94.35	uncharacterized protein LOC111477681 OS=Cucurbita maxima OX=3661 GN=LOC111477681...	[more]
A0A5D3CNX5	1.97e-46	69.05	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3B2N5	1.97e-46	69.05	uncharacterized protein LOC103485326 OS=Cucumis melo OX=3656 GN=LOC103485326 PE=...	[more]
A0A0A0KHU7	5.69e-43	66.94	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G514300 PE=4 SV=1	[more]
A0A059CAC2	3.75e-12	36.00	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_E04063 PE=4 SV...	[more]

BLAST of Cp4.1LG10g09660 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G21920.1	6.4e-05	26.28	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-termin...	[more]
AT3G20340.1	3.2e-04	34.25	Expression of the gene is downregulated in the presence of paraquat, an inducer ...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..42
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..15
None	No IPR available	PANTHER	PTHR33647:SF5	OS01G0793900 PROTEIN	coord: 1..122
None	No IPR available	PANTHER	PTHR33647	OS01G0793900 PROTEIN	coord: 1..122

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG10g09660.1	Cp4.1LG10g09660.1	mRNA