Cp4.1LG10g09230 (gene) Cucurbita pepo (MU‐CU‐16) v4.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGAATCCCTCCCTCCTCATTTCCGCTCTTCTCCTCGCCGTTCTCCTCCTCTCCCCCTCCGCCTCTCTCGCCGCCGGGATGTTCGAACCGGGCGGCGGATTTGATGACATACCCGGCTTTCGGAAAGGCTGGGACAAGGGGATCGTCGGTGGTGGCTACGGCGGTGGATACGGCGGACCCAAAGGCGGTTACGGCAAGGGTGGAATCATAAGGAACACTGTGGTGTGTAAAGAGAAAGGTCCTTGTTACAATAAGAAGGTGACTTGTCCGGCCAAGTGCTTCTCCTCTTATAGCCGATCGGGCAAGGGATTCGGAGGCGGCGGCGGCGGCGGTGGCTGCACCATCGACTGCTCTAAGAAGTGTATTGGCTATTGTTAG ATGAATCCCTCCCTCCTCATTTCCGCTCTTCTCCTCGCCGTTCTCCTCCTCTCCCCCTCCGCCTCTCTCGCCGCCGGGATGTTCGAACCGGGCGGCGGATTTGATGACATACCCGGCTTTCGGAAAGGCTGGGACAAGGGGATCGTCGGTGGTGGCTACGGCGGTGGATACGGCGGACCCAAAGGCGGTTACGGCAAGGGTGGAATCATAAGGAACACTGTGGTGTGTAAAGAGAAAGGTCCTTGTTACAATAAGAAGGTGACTTGTCCGGCCAAGTGCTTCTCCTCTTATAGCCGATCGGGCAAGGGATTCGGAGGCGGCGGCGGCGGCGGTGGCTGCACCATCGACTGCTCTAAGAAGTGTATTGGCTATTGTTAG ATGAATCCCTCCCTCCTCATTTCCGCTCTTCTCCTCGCCGTTCTCCTCCTCTCCCCCTCCGCCTCTCTCGCCGCCGGGATGTTCGAACCGGGCGGCGGATTTGATGACATACCCGGCTTTCGGAAAGGCTGGGACAAGGGGATCGTCGGTGGTGGCTACGGCGGTGGATACGGCGGACCCAAAGGCGGTTACGGCAAGGGTGGAATCATAAGGAACACTGTGGTGTGTAAAGAGAAAGGTCCTTGTTACAATAAGAAGGTGACTTGTCCGGCCAAGTGCTTCTCCTCTTATAGCCGATCGGGCAAGGGATTCGGAGGCGGCGGCGGCGGCGGTGGCTGCACCATCGACTGCTCTAAGAAGTGTATTGGCTATTGTTAG MNPSLLISALLLAVLLLSPSASLAAGMFEPGGGFDDIPGFRKGWDKGIVGGGYGGGYGGPKGGYGKGGIIRNTVVCKEKGPCYNKKVTCPAKCFSSYSRSGKGFGGGGGGGGCTIDCSKKCIGYC Homology
BLAST of Cp4.1LG10g09230 vs. NCBI nr
Match: XP_023543509.1 (ATP-dependent RNA helicase A [Cucurbita pepo subsp. pepo]) HSP 1 Score: 253 bits (646), Expect = 8.05e-85 Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0
BLAST of Cp4.1LG10g09230 vs. NCBI nr
Match: XP_022977844.1 (ATP-dependent RNA helicase A-like [Cucurbita maxima]) HSP 1 Score: 246 bits (628), Expect = 4.48e-82 Identity = 120/125 (96.00%), Postives = 124/125 (99.20%), Query Frame = 0
BLAST of Cp4.1LG10g09230 vs. NCBI nr
Match: KAG6603713.1 (hypothetical protein SDJN03_04322, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 244 bits (623), Expect = 2.60e-81 Identity = 122/125 (97.60%), Postives = 122/125 (97.60%), Query Frame = 0
BLAST of Cp4.1LG10g09230 vs. NCBI nr
Match: XP_022950168.1 (heterogeneous nuclear ribonucleoprotein A3 homolog 2-like [Cucurbita moschata]) HSP 1 Score: 243 bits (621), Expect = 5.24e-81 Identity = 121/125 (96.80%), Postives = 122/125 (97.60%), Query Frame = 0
BLAST of Cp4.1LG10g09230 vs. NCBI nr
Match: KAG7033891.1 (hypothetical protein SDJN02_03616, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 243 bits (621), Expect = 2.89e-80 Identity = 122/124 (98.39%), Postives = 122/124 (98.39%), Query Frame = 0
BLAST of Cp4.1LG10g09230 vs. ExPASy TrEMBL
Match: A0A6J1ISI2 (ATP-dependent RNA helicase A-like OS=Cucurbita maxima OX=3661 GN=LOC111478019 PE=4 SV=1) HSP 1 Score: 246 bits (628), Expect = 2.17e-82 Identity = 120/125 (96.00%), Postives = 124/125 (99.20%), Query Frame = 0
BLAST of Cp4.1LG10g09230 vs. ExPASy TrEMBL
Match: A0A6J1GE63 (heterogeneous nuclear ribonucleoprotein A3 homolog 2-like OS=Cucurbita moschata OX=3662 GN=LOC111453342 PE=4 SV=1) HSP 1 Score: 243 bits (621), Expect = 2.54e-81 Identity = 121/125 (96.80%), Postives = 122/125 (97.60%), Query Frame = 0
BLAST of Cp4.1LG10g09230 vs. ExPASy TrEMBL
Match: A0A6J1EFI3 (neuropeptide-like protein 31 OS=Cucurbita moschata OX=3662 GN=LOC111433724 PE=4 SV=1) HSP 1 Score: 220 bits (560), Expect = 7.09e-72 Identity = 111/135 (82.22%), Postives = 116/135 (85.93%), Query Frame = 0
BLAST of Cp4.1LG10g09230 vs. ExPASy TrEMBL
Match: A0A6J1KMH9 (eggshell protein-like OS=Cucurbita maxima OX=3661 GN=LOC111497041 PE=4 SV=1) HSP 1 Score: 214 bits (544), Expect = 1.83e-69 Identity = 109/134 (81.34%), Postives = 114/134 (85.07%), Query Frame = 0
BLAST of Cp4.1LG10g09230 vs. ExPASy TrEMBL
Match: A0A5D3CRS6 (Ctenidin-3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G007150 PE=4 SV=1) HSP 1 Score: 209 bits (533), Expect = 8.68e-68 Identity = 103/123 (83.74%), Postives = 108/123 (87.80%), Query Frame = 0
BLAST of Cp4.1LG10g09230 vs. TAIR 10
Match: AT4G21620.1 (glycine-rich protein ) HSP 1 Score: 142.5 bits (358), Expect = 2.3e-34 Identity = 77/129 (59.69%), Postives = 95/129 (73.64%), Query Frame = 0
BLAST of Cp4.1LG10g09230 vs. TAIR 10
Match: AT4G21620.2 (glycine-rich protein ) HSP 1 Score: 114.8 bits (286), Expect = 5.1e-26 Identity = 49/64 (76.56%), Postives = 56/64 (87.50%), Query Frame = 0
BLAST of Cp4.1LG10g09230 vs. TAIR 10
Match: AT1G61255.1 (BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT4G21620.2); Has 58 Blast hits to 58 proteins in 12 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 90.9 bits (224), Expect = 7.9e-19 Identity = 62/141 (43.97%), Postives = 77/141 (54.61%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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