Cp4.1LG10g09230 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG10g09230
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Descriptionctenidin-3-like
LocationCp4.1LG10: 4708836 .. 4709213 (+)
RNA-Seq ExpressionCp4.1LG10g09230
SyntenyCp4.1LG10g09230
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATCCCTCCCTCCTCATTTCCGCTCTTCTCCTCGCCGTTCTCCTCCTCTCCCCCTCCGCCTCTCTCGCCGCCGGGATGTTCGAACCGGGCGGCGGATTTGATGACATACCCGGCTTTCGGAAAGGCTGGGACAAGGGGATCGTCGGTGGTGGCTACGGCGGTGGATACGGCGGACCCAAAGGCGGTTACGGCAAGGGTGGAATCATAAGGAACACTGTGGTGTGTAAAGAGAAAGGTCCTTGTTACAATAAGAAGGTGACTTGTCCGGCCAAGTGCTTCTCCTCTTATAGCCGATCGGGCAAGGGATTCGGAGGCGGCGGCGGCGGCGGTGGCTGCACCATCGACTGCTCTAAGAAGTGTATTGGCTATTGTTAG

mRNA sequence

ATGAATCCCTCCCTCCTCATTTCCGCTCTTCTCCTCGCCGTTCTCCTCCTCTCCCCCTCCGCCTCTCTCGCCGCCGGGATGTTCGAACCGGGCGGCGGATTTGATGACATACCCGGCTTTCGGAAAGGCTGGGACAAGGGGATCGTCGGTGGTGGCTACGGCGGTGGATACGGCGGACCCAAAGGCGGTTACGGCAAGGGTGGAATCATAAGGAACACTGTGGTGTGTAAAGAGAAAGGTCCTTGTTACAATAAGAAGGTGACTTGTCCGGCCAAGTGCTTCTCCTCTTATAGCCGATCGGGCAAGGGATTCGGAGGCGGCGGCGGCGGCGGTGGCTGCACCATCGACTGCTCTAAGAAGTGTATTGGCTATTGTTAG

Coding sequence (CDS)

ATGAATCCCTCCCTCCTCATTTCCGCTCTTCTCCTCGCCGTTCTCCTCCTCTCCCCCTCCGCCTCTCTCGCCGCCGGGATGTTCGAACCGGGCGGCGGATTTGATGACATACCCGGCTTTCGGAAAGGCTGGGACAAGGGGATCGTCGGTGGTGGCTACGGCGGTGGATACGGCGGACCCAAAGGCGGTTACGGCAAGGGTGGAATCATAAGGAACACTGTGGTGTGTAAAGAGAAAGGTCCTTGTTACAATAAGAAGGTGACTTGTCCGGCCAAGTGCTTCTCCTCTTATAGCCGATCGGGCAAGGGATTCGGAGGCGGCGGCGGCGGCGGTGGCTGCACCATCGACTGCTCTAAGAAGTGTATTGGCTATTGTTAG

Protein sequence

MNPSLLISALLLAVLLLSPSASLAAGMFEPGGGFDDIPGFRKGWDKGIVGGGYGGGYGGPKGGYGKGGIIRNTVVCKEKGPCYNKKVTCPAKCFSSYSRSGKGFGGGGGGGGCTIDCSKKCIGYC
Homology
BLAST of Cp4.1LG10g09230 vs. NCBI nr
Match: XP_023543509.1 (ATP-dependent RNA helicase A [Cucurbita pepo subsp. pepo])

HSP 1 Score: 253 bits (646), Expect = 8.05e-85
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0

Query: 1   MNPSLLISALLLAVLLLSPSASLAAGMFEPGGGFDDIPGFRKGWDKGIVGGGYGGGYGGP 60
           MNPSLLISALLLAVLLLSPSASLAAGMFEPGGGFDDIPGFRKGWDKGIVGGGYGGGYGGP
Sbjct: 1   MNPSLLISALLLAVLLLSPSASLAAGMFEPGGGFDDIPGFRKGWDKGIVGGGYGGGYGGP 60

Query: 61  KGGYGKGGIIRNTVVCKEKGPCYNKKVTCPAKCFSSYSRSGKGFGGGGGGGGCTIDCSKK 120
           KGGYGKGGIIRNTVVCKEKGPCYNKKVTCPAKCFSSYSRSGKGFGGGGGGGGCTIDCSKK
Sbjct: 61  KGGYGKGGIIRNTVVCKEKGPCYNKKVTCPAKCFSSYSRSGKGFGGGGGGGGCTIDCSKK 120

Query: 121 CIGYC 125
           CIGYC
Sbjct: 121 CIGYC 125

BLAST of Cp4.1LG10g09230 vs. NCBI nr
Match: XP_022977844.1 (ATP-dependent RNA helicase A-like [Cucurbita maxima])

HSP 1 Score: 246 bits (628), Expect = 4.48e-82
Identity = 120/125 (96.00%), Postives = 124/125 (99.20%), Query Frame = 0

Query: 1   MNPSLLISALLLAVLLLSPSASLAAGMFEPGGGFDDIPGFRKGWDKGIVGGGYGGGYGGP 60
           MNPSL ISALLLA+LLLSPSASLAAG+FEPGGGFDDIPGFRKGWDKGIVGGGYGGGYGGP
Sbjct: 1   MNPSLPISALLLAILLLSPSASLAAGVFEPGGGFDDIPGFRKGWDKGIVGGGYGGGYGGP 60

Query: 61  KGGYGKGGIIRNTVVCKEKGPCYNKKVTCPAKCFSSYSRSGKGFGGGGGGGGCTIDCSKK 120
           KGGYGKGGIIRNTV+CKE+GPCYNKKVTCPAKCFSSYSRSGKGFGGGGGGGGCTIDCSKK
Sbjct: 61  KGGYGKGGIIRNTVLCKERGPCYNKKVTCPAKCFSSYSRSGKGFGGGGGGGGCTIDCSKK 120

Query: 121 CIGYC 125
           CIGYC
Sbjct: 121 CIGYC 125

BLAST of Cp4.1LG10g09230 vs. NCBI nr
Match: KAG6603713.1 (hypothetical protein SDJN03_04322, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 244 bits (623), Expect = 2.60e-81
Identity = 122/125 (97.60%), Postives = 122/125 (97.60%), Query Frame = 0

Query: 1   MNPSLLISALLLAVLLLSPSASLAAGMFEPGGGFDDIPGFRKGWDKGIVGGGYGGGYGGP 60
           MN SL ISALLLAVLLLSPSASLAAGMFEPGGGFDDIPGFRKGWDKGIVGGGYGGGYGGP
Sbjct: 1   MNLSLPISALLLAVLLLSPSASLAAGMFEPGGGFDDIPGFRKGWDKGIVGGGYGGGYGGP 60

Query: 61  KGGYGKGGIIRNTVVCKEKGPCYNKKVTCPAKCFSSYSRSGKGFGGGGGGGGCTIDCSKK 120
           KG YGKGGIIRNTVVCKEKGPCYNKKVTCPAKCFSSYSRSGKGFGGGGGGGGCTIDCSKK
Sbjct: 61  KGSYGKGGIIRNTVVCKEKGPCYNKKVTCPAKCFSSYSRSGKGFGGGGGGGGCTIDCSKK 120

Query: 121 CIGYC 125
           CIGYC
Sbjct: 121 CIGYC 125

BLAST of Cp4.1LG10g09230 vs. NCBI nr
Match: XP_022950168.1 (heterogeneous nuclear ribonucleoprotein A3 homolog 2-like [Cucurbita moschata])

HSP 1 Score: 243 bits (621), Expect = 5.24e-81
Identity = 121/125 (96.80%), Postives = 122/125 (97.60%), Query Frame = 0

Query: 1   MNPSLLISALLLAVLLLSPSASLAAGMFEPGGGFDDIPGFRKGWDKGIVGGGYGGGYGGP 60
           MNPSL ISALLLAVLLLSPSASLAAGMFEPGGGFDDIPGFRKGWDKGIVGGGYGGGYGGP
Sbjct: 1   MNPSLPISALLLAVLLLSPSASLAAGMFEPGGGFDDIPGFRKGWDKGIVGGGYGGGYGGP 60

Query: 61  KGGYGKGGIIRNTVVCKEKGPCYNKKVTCPAKCFSSYSRSGKGFGGGGGGGGCTIDCSKK 120
           KG YGKGGIIRNTVVCKEKGPCYNKKVTCPAKCFSSYSRS KGFGGGGGGGGCTIDCS+K
Sbjct: 61  KGSYGKGGIIRNTVVCKEKGPCYNKKVTCPAKCFSSYSRSRKGFGGGGGGGGCTIDCSEK 120

Query: 121 CIGYC 125
           CIGYC
Sbjct: 121 CIGYC 125

BLAST of Cp4.1LG10g09230 vs. NCBI nr
Match: KAG7033891.1 (hypothetical protein SDJN02_03616, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 243 bits (621), Expect = 2.89e-80
Identity = 122/124 (98.39%), Postives = 122/124 (98.39%), Query Frame = 0

Query: 1   MNPSLLISALLLAVLLLSPSASLAAGMFEPGGGFDDIPGFRKGWDKGIVGGGYGGGYGGP 60
           MN SL ISALLLAVLLLSPSASLAAGMFEPGGGFDDIPGFRKGWDKGIVGGGYGGGYGGP
Sbjct: 1   MNLSLPISALLLAVLLLSPSASLAAGMFEPGGGFDDIPGFRKGWDKGIVGGGYGGGYGGP 60

Query: 61  KGGYGKGGIIRNTVVCKEKGPCYNKKVTCPAKCFSSYSRSGKGFGGGGGGGGCTIDCSKK 120
           KGGYGKGGIIRNTVVCKEKGPCYNKKVTCPAKCFSSYSRSGKGFGGGGGGGGCTIDCSKK
Sbjct: 61  KGGYGKGGIIRNTVVCKEKGPCYNKKVTCPAKCFSSYSRSGKGFGGGGGGGGCTIDCSKK 120

Query: 121 CIGY 124
           CIGY
Sbjct: 121 CIGY 124

BLAST of Cp4.1LG10g09230 vs. ExPASy TrEMBL
Match: A0A6J1ISI2 (ATP-dependent RNA helicase A-like OS=Cucurbita maxima OX=3661 GN=LOC111478019 PE=4 SV=1)

HSP 1 Score: 246 bits (628), Expect = 2.17e-82
Identity = 120/125 (96.00%), Postives = 124/125 (99.20%), Query Frame = 0

Query: 1   MNPSLLISALLLAVLLLSPSASLAAGMFEPGGGFDDIPGFRKGWDKGIVGGGYGGGYGGP 60
           MNPSL ISALLLA+LLLSPSASLAAG+FEPGGGFDDIPGFRKGWDKGIVGGGYGGGYGGP
Sbjct: 1   MNPSLPISALLLAILLLSPSASLAAGVFEPGGGFDDIPGFRKGWDKGIVGGGYGGGYGGP 60

Query: 61  KGGYGKGGIIRNTVVCKEKGPCYNKKVTCPAKCFSSYSRSGKGFGGGGGGGGCTIDCSKK 120
           KGGYGKGGIIRNTV+CKE+GPCYNKKVTCPAKCFSSYSRSGKGFGGGGGGGGCTIDCSKK
Sbjct: 61  KGGYGKGGIIRNTVLCKERGPCYNKKVTCPAKCFSSYSRSGKGFGGGGGGGGCTIDCSKK 120

Query: 121 CIGYC 125
           CIGYC
Sbjct: 121 CIGYC 125

BLAST of Cp4.1LG10g09230 vs. ExPASy TrEMBL
Match: A0A6J1GE63 (heterogeneous nuclear ribonucleoprotein A3 homolog 2-like OS=Cucurbita moschata OX=3662 GN=LOC111453342 PE=4 SV=1)

HSP 1 Score: 243 bits (621), Expect = 2.54e-81
Identity = 121/125 (96.80%), Postives = 122/125 (97.60%), Query Frame = 0

Query: 1   MNPSLLISALLLAVLLLSPSASLAAGMFEPGGGFDDIPGFRKGWDKGIVGGGYGGGYGGP 60
           MNPSL ISALLLAVLLLSPSASLAAGMFEPGGGFDDIPGFRKGWDKGIVGGGYGGGYGGP
Sbjct: 1   MNPSLPISALLLAVLLLSPSASLAAGMFEPGGGFDDIPGFRKGWDKGIVGGGYGGGYGGP 60

Query: 61  KGGYGKGGIIRNTVVCKEKGPCYNKKVTCPAKCFSSYSRSGKGFGGGGGGGGCTIDCSKK 120
           KG YGKGGIIRNTVVCKEKGPCYNKKVTCPAKCFSSYSRS KGFGGGGGGGGCTIDCS+K
Sbjct: 61  KGSYGKGGIIRNTVVCKEKGPCYNKKVTCPAKCFSSYSRSRKGFGGGGGGGGCTIDCSEK 120

Query: 121 CIGYC 125
           CIGYC
Sbjct: 121 CIGYC 125

BLAST of Cp4.1LG10g09230 vs. ExPASy TrEMBL
Match: A0A6J1EFI3 (neuropeptide-like protein 31 OS=Cucurbita moschata OX=3662 GN=LOC111433724 PE=4 SV=1)

HSP 1 Score: 220 bits (560), Expect = 7.09e-72
Identity = 111/135 (82.22%), Postives = 116/135 (85.93%), Query Frame = 0

Query: 1   MNPSLLISALLLAVLLLSPSASLAA----------GMFEPGGGFDDIPGFRKGWDKGIVG 60
           MN  + IS LL+AVLLLSP+ SLA           GMF PG GFDDIPGF KGWDKGI+G
Sbjct: 1   MNRHMAISTLLVAVLLLSPAFSLATARNSGGGGFDGMFGPGNGFDDIPGFGKGWDKGIIG 60

Query: 61  GGYGGGYGGPKGGYGKGGIIRNTVVCKEKGPCYNKKVTCPAKCFSSYSRSGKGFGGGGGG 120
           GGYGGGYGGPKGGYGKGGIIRNTVVCKEKGPCYNKKVTCPAKCFSSYSRSGKGFGGGGGG
Sbjct: 61  GGYGGGYGGPKGGYGKGGIIRNTVVCKEKGPCYNKKVTCPAKCFSSYSRSGKGFGGGGGG 120

Query: 121 GGCTIDCSKKCIGYC 125
           GGCTIDC+KKCIGYC
Sbjct: 121 GGCTIDCTKKCIGYC 135

BLAST of Cp4.1LG10g09230 vs. ExPASy TrEMBL
Match: A0A6J1KMH9 (eggshell protein-like OS=Cucurbita maxima OX=3661 GN=LOC111497041 PE=4 SV=1)

HSP 1 Score: 214 bits (544), Expect = 1.83e-69
Identity = 109/134 (81.34%), Postives = 114/134 (85.07%), Query Frame = 0

Query: 1   MNPSLLISALLLAVLLLSPSASLAA---------GMFEPGGGFDDIPGFRKGWDKGIVGG 60
           MN  + IS LL+ V LLSP+ S A          GMFEPG GFDDIPGF KGWDKGI+GG
Sbjct: 1   MNRHMAISTLLV-VFLLSPAFSFATARNSGGGFDGMFEPGNGFDDIPGFGKGWDKGIIGG 60

Query: 61  GYGGGYGGPKGGYGKGGIIRNTVVCKEKGPCYNKKVTCPAKCFSSYSRSGKGFGGGGGGG 120
           GYGGGYGGPKGGYGKGGIIRNTVVCKEKGPCYNKKVTCPAKCFSSYSRSGKGFGGGGGGG
Sbjct: 61  GYGGGYGGPKGGYGKGGIIRNTVVCKEKGPCYNKKVTCPAKCFSSYSRSGKGFGGGGGGG 120

Query: 121 GCTIDCSKKCIGYC 125
           GCTIDC+KKCIGYC
Sbjct: 121 GCTIDCTKKCIGYC 133

BLAST of Cp4.1LG10g09230 vs. ExPASy TrEMBL
Match: A0A5D3CRS6 (Ctenidin-3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G007150 PE=4 SV=1)

HSP 1 Score: 209 bits (533), Expect = 8.68e-68
Identity = 103/123 (83.74%), Postives = 108/123 (87.80%), Query Frame = 0

Query: 11  LLAVLLLSPSASLAA--------GMFEPGGGFDDIPGFRKGWDKGIVGGGYGGGYGGPKG 70
           L+A+LLLSPS SLA         GMF PG GFDDIPGF KGWDKGIVGGGYGGGYGGPKG
Sbjct: 11  LIAILLLSPSLSLATSRKDGGFGGMFGPGNGFDDIPGFGKGWDKGIVGGGYGGGYGGPKG 70

Query: 71  GYGKGGIIRNTVVCKEKGPCYNKKVTCPAKCFSSYSRSGKGFGGGGGGGGCTIDCSKKCI 125
           GYGKGGIIR  VVCKEKGPC+NKKVTCPAKCFSSYSRSGKG+GGGGGGGGCTIDC+KKCI
Sbjct: 71  GYGKGGIIRKPVVCKEKGPCFNKKVTCPAKCFSSYSRSGKGYGGGGGGGGCTIDCAKKCI 130

BLAST of Cp4.1LG10g09230 vs. TAIR 10
Match: AT4G21620.1 (glycine-rich protein )

HSP 1 Score: 142.5 bits (358), Expect = 2.3e-34
Identity = 77/129 (59.69%), Postives = 95/129 (73.64%), Query Frame = 0

Query: 4   SLLISALLLAVLL-LSPSASLAAGM------FEPGGGFDDIPGFRKGWDKGIVGGGYGGG 63
           S+L+++LL+ +L+  + SA   +G         PG GF  IPGF  G+    VGGGYGGG
Sbjct: 5   SILLASLLIIILVSATESARQKSGNDGLGFGGVPGSGF--IPGFGNGFPGTGVGGGYGGG 64

Query: 64  YGGPKGGYGKGGIIRNTVVCKEKGPCYNKKVTCPAKCFSSYSRSGKGFGGGGGGGGCTID 123
           +GGP GG+GKGG++R TV CKEKGPC  KK+ CPAKCF S+SRSGKG+GGGGGGGGCT+D
Sbjct: 65  FGGPSGGFGKGGVVRPTVTCKEKGPCNGKKLRCPAKCFKSFSRSGKGYGGGGGGGGCTMD 124

Query: 124 CSKKCIGYC 126
           C KKCI YC
Sbjct: 125 CKKKCIAYC 131

BLAST of Cp4.1LG10g09230 vs. TAIR 10
Match: AT4G21620.2 (glycine-rich protein )

HSP 1 Score: 114.8 bits (286), Expect = 5.1e-26
Identity = 49/64 (76.56%), Postives = 56/64 (87.50%), Query Frame = 0

Query: 62  GGYGKGGIIRNTVVCKEKGPCYNKKVTCPAKCFSSYSRSGKGFGGGGGGGGCTIDCSKKC 121
           GG+GKGG++R TV CKEKGPC  KK+ CPAKCF S+SRSGKG+GGGGGGGGCT+DC KKC
Sbjct: 35  GGFGKGGVVRPTVTCKEKGPCNGKKLRCPAKCFKSFSRSGKGYGGGGGGGGCTMDCKKKC 94

Query: 122 IGYC 126
           I YC
Sbjct: 95  IAYC 98

BLAST of Cp4.1LG10g09230 vs. TAIR 10
Match: AT1G61255.1 (BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT4G21620.2); Has 58 Blast hits to 58 proteins in 12 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 90.9 bits (224), Expect = 7.9e-19
Identity = 62/141 (43.97%), Postives = 77/141 (54.61%), Query Frame = 0

Query: 4   SLLISALLLAVLL-----LSPSASLAAGMFEPGGGFDDIPGFRKGWDKG----------- 63
           +LL + LLL + L       P +S + G +           + KG+  G           
Sbjct: 6   NLLFTILLLTLTLSHSRPARPESSSSTGSYSDQLKKHSKDNYNKGYGSGGYPGLTTEPAT 65

Query: 64  ---IVGGGYGGGYGGPKGGYGKGGIIRNTVVCKEKGPCYNKKVTCPAKCFSSYSRSGKGF 123
              + G G GG Y    GGY KG  +R TV+C+EKG CY KK+TCPAKCF S SR GKG+
Sbjct: 66  GFILPGSGPGGSYSELSGGYSKGRGVRLTVMCEEKGHCYMKKLTCPAKCFKSLSRKGKGY 125

Query: 124 GGGGGGGGCTIDCSKKCIGYC 126
             GGGGGGCTIDC KKC+ YC
Sbjct: 126 --GGGGGGCTIDC-KKCVAYC 143

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_023543509.18.05e-85100.00ATP-dependent RNA helicase A [Cucurbita pepo subsp. pepo][more]
XP_022977844.14.48e-8296.00ATP-dependent RNA helicase A-like [Cucurbita maxima][more]
KAG6603713.12.60e-8197.60hypothetical protein SDJN03_04322, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022950168.15.24e-8196.80heterogeneous nuclear ribonucleoprotein A3 homolog 2-like [Cucurbita moschata][more]
KAG7033891.12.89e-8098.39hypothetical protein SDJN02_03616, partial [Cucurbita argyrosperma subsp. argyro... [more]
Match NameE-valueIdentityDescription
A0A6J1ISI22.17e-8296.00ATP-dependent RNA helicase A-like OS=Cucurbita maxima OX=3661 GN=LOC111478019 PE... [more]
A0A6J1GE632.54e-8196.80heterogeneous nuclear ribonucleoprotein A3 homolog 2-like OS=Cucurbita moschata ... [more]
A0A6J1EFI37.09e-7282.22neuropeptide-like protein 31 OS=Cucurbita moschata OX=3662 GN=LOC111433724 PE=4 ... [more]
A0A6J1KMH91.83e-6981.34eggshell protein-like OS=Cucurbita maxima OX=3661 GN=LOC111497041 PE=4 SV=1[more]
A0A5D3CRS68.68e-6883.74Ctenidin-3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G0071... [more]
Match NameE-valueIdentityDescription
AT4G21620.12.3e-3459.69glycine-rich protein [more]
AT4G21620.25.1e-2676.56glycine-rich protein [more]
AT1G61255.17.9e-1943.97BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT4G21620... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34789:SF1EXPRESSED PROTEINcoord: 24..125
NoneNo IPR availablePANTHERPTHR34789EXPRESSED PROTEINcoord: 24..125

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG10g09230.1Cp4.1LG10g09230.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007218 neuropeptide signaling pathway
molecular_function GO:0004386 helicase activity