Cp4.1LG10g08770 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG10g08770
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Plant protein 1589 of unknown function
Location	Cp4.1LG10: 4879539 .. 4880693 (-)
RNA-Seq Expression	Cp4.1LG10g08770
Synteny	Cp4.1LG10g08770

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AACCCCCCCTTCCACTTTCCCACCCACAAAATTTTCTCTCGGATTTTCCCTTCACTTTCTCGCATTTTCTCTCTCTCCAAACAGAATCATATCCCCCATGGAAGACGACCCCTCTGCTTCATACATCCACATGGTATTTCTTTTTATTTTATTTTATTTTATTTTATTTATCTCTTTAAATTTCGTTAACGGACGGATGATGTGCGGGCGTATGATTATTGTGGTGTAGGTGCATCACCTGATCGAACAGTGTATAATTTTCAACATGAACAAAGAAGAGTGCATGGAAGCTCTCTCCAAACATGCCAATATCAAACCGGTCATCACTTCCACCGGTTCGTTTTCTCTCACGTGATGTGCACGGACTTCGACTCCTTTTTTTTTTTTTTTTTTTTTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATTTTGTAAAATGTGTGCAGTGTGGAATGAACTGGAGAAGGAGAACAAGGAGTTCTTCGAAGCGTATAAGAAGAAACGACGTGACGTTACGACGAGGGCTGCTGATGGGAATTCGTCCGACACGTCGGATTTCAACTTGCTGGATTCGGGGAATACGACGTCGGGTAGGTAGATGGGTAGACAAGCGGTGGTGATGGTGGATGGAAATTAATAAAAAAATATGAAATAAGATAAAACAAGAACATGCCTTTGTACGACGCCGTTTTTAAGGATCGTAGGTGAATGGAACAGCGGCGTTGGGTAAGGGAGGAGTCGATGGGATAATTTGAGGGGAGTGAAGATATTTTAGGATATCTTGCTGACACGTGGGGAAACGTGGCTACACGTGGCAGCATGCTGCAATTTTCTTTTTTTAATGTATTGCTATCGTTTGCTGATTGGACCTTGTCGGAGGTGTAGTAATTTAAATGGAATTTCCTTTTTTAGTTTTATTTTTATTTTCTTTGTTTTCCTTCCAGTGAAATTAAGACAGTCTGAGCCAATCAATAATTGCCACCTGTATTTTTCTTTTTATCTAAATTAAAAAAAAAAGAAGACAC

mRNA sequence

AACCCCCCCTTCCACTTTCCCACCCACAAAATTTTCTCTCGGATTTTCCCTTCACTTTCTCGCATTTTCTCTCTCTCCAAACAGAATCATATCCCCCATGGAAGACGACCCCTCTGCTTCATACATCCACATGGTGCATCACCTGATCGAACAGTGTATAATTTTCAACATGAACAAAGAAGAGTGCATGGAAGCTCTCTCCAAACATGCCAATATCAAACCGGTCATCACTTCCACCGTGTGGAATGAACTGGAGAAGGAGAACAAGGAGTTCTTCGAAGCGTATAAGAAGAAACGACGTGACGTTACGACGAGGGCTGCTGATGGGAATTCGTCCGACACGTCGGATTTCAACTTGCTGGATTCGGGGAATACGACGTCGGGTAGGTAGATGGGTAGACAAGCGGTGGTGATGGTGGATGGAAATTAATAAAAAAATATGAAATAAGATAAAACAAGAACATGCCTTTGTACGACGCCGTTTTTAAGGATCGTAGGTGAATGGAACAGCGGCGTTGGGTAAGGGAGGAGTCGATGGGATAATTTGAGGGGAGTGAAGATATTTTAGGATATCTTGCTGACACGTGGGGAAACGTGGCTACACGTGGCAGCATGCTGCAATTTTCTTTTTTTAATGTATTGCTATCGTTTGCTGATTGGACCTTGTCGGAGGTGTAGTAATTTAAATGGAATTTCCTTTTTTAGTTTTATTTTTATTTTCTTTGTTTTCCTTCCAGTGAAATTAAGACAGTCTGAGCCAATCAATAATTGCCACCTGTATTTTTCTTTTTATCTAAATTAAAAAAAAAAGAAGACAC

Coding sequence (CDS)

ATGGAAGACGACCCCTCTGCTTCATACATCCACATGGTGCATCACCTGATCGAACAGTGTATAATTTTCAACATGAACAAAGAAGAGTGCATGGAAGCTCTCTCCAAACATGCCAATATCAAACCGGTCATCACTTCCACCGTGTGGAATGAACTGGAGAAGGAGAACAAGGAGTTCTTCGAAGCGTATAAGAAGAAACGACGTGACGTTACGACGAGGGCTGCTGATGGGAATTCGTCCGACACGTCGGATTTCAACTTGCTGGATTCGGGGAATACGACGTCGGGTAGGTAG

Protein sequence

MEDDPSASYIHMVHHLIEQCIIFNMNKEECMEALSKHANIKPVITSTVWNELEKENKEFFEAYKKKRRDVTTRAADGNSSDTSDFNLLDSGNTTSGR

Homology

[Close]

BLAST of Cp4.1LG10g08770 vs. NCBI nr
Match: XP_023544368.1 (uncharacterized protein LOC111803972 [Cucurbita pepo subsp. pepo] >KAG7033856.1 hypothetical protein SDJN02_03581 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 194 bits (493), Expect = 2.24e-62
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 1  MEDDPSASYIHMVHHLIEQCIIFNMNKEECMEALSKHANIKPVITSTVWNELEKENKEFF 60
          MEDDPSASYIHMVHHLIEQCIIFNMNKEECMEALSKHANIKPVITSTVWNELEKENKEFF
Sbjct: 1  MEDDPSASYIHMVHHLIEQCIIFNMNKEECMEALSKHANIKPVITSTVWNELEKENKEFF 60

Query: 61 EAYKKKRRDVTTRAADGNSSDTSDFNLLDSGNTTSGR 97
          EAYKKKRRDVTTRAADGNSSDTSDFNLLDSGNTTSGR
Sbjct: 61 EAYKKKRRDVTTRAADGNSSDTSDFNLLDSGNTTSGR 97

[Close]

BLAST of Cp4.1LG10g08770 vs. NCBI nr
Match: KAG6603679.1 (hypothetical protein SDJN03_04288, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 193 bits (490), Expect = 6.44e-62
Identity = 96/97 (98.97%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 1  MEDDPSASYIHMVHHLIEQCIIFNMNKEECMEALSKHANIKPVITSTVWNELEKENKEFF 60
          MEDDPSASYIHMVHHLIEQCIIFNMNKEECMEALSKHANIKPVITSTVWNELEKENKEFF
Sbjct: 1  MEDDPSASYIHMVHHLIEQCIIFNMNKEECMEALSKHANIKPVITSTVWNELEKENKEFF 60

Query: 61 EAYKKKRRDVTTRAADGNSSDTSDFNLLDSGNTTSGR 97
          EAYKKKRRDVTTRAADGNS+DTSDFNLLDSGNTTSGR
Sbjct: 61 EAYKKKRRDVTTRAADGNSTDTSDFNLLDSGNTTSGR 97

[Close]

BLAST of Cp4.1LG10g08770 vs. NCBI nr
Match: XP_022977252.1 (uncharacterized protein LOC111477620 [Cucurbita maxima])

HSP 1 Score: 189 bits (481), Expect = 1.52e-60
Identity = 94/97 (96.91%), Postives = 96/97 (98.97%), Query Frame = 0


Query: 1  MEDDPSASYIHMVHHLIEQCIIFNMNKEECMEALSKHANIKPVITSTVWNELEKENKEFF 60
          MEDDPSASYIHMVHHLIEQCI+FNMNKEECMEALSKHANIKPVITSTVWNELEKENKEFF
Sbjct: 1  MEDDPSASYIHMVHHLIEQCIVFNMNKEECMEALSKHANIKPVITSTVWNELEKENKEFF 60

Query: 61 EAYKKKRRDVTTRAADGNSSDTSDFNLLDSGNTTSGR 97
          EAYKKKRRDVTTRAADG SSDTSDFNLLDSG+TTSGR
Sbjct: 61 EAYKKKRRDVTTRAADGTSSDTSDFNLLDSGDTTSGR 97

[Close]

BLAST of Cp4.1LG10g08770 vs. NCBI nr
Match: XP_022950247.1 (uncharacterized protein LOC111453395 [Cucurbita moschata])

HSP 1 Score: 170 bits (431), Expect = 4.62e-53
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 12 MVHHLIEQCIIFNMNKEECMEALSKHANIKPVITSTVWNELEKENKEFFEAYKKKRRDVT 71
          MVHHLIEQCIIFNMNKEECMEALSKHANIKPVITSTVWNELEKENKEFFEAYKKKRRDVT
Sbjct: 1  MVHHLIEQCIIFNMNKEECMEALSKHANIKPVITSTVWNELEKENKEFFEAYKKKRRDVT 60

Query: 72 TRAADGNSSDTSDFNLLDSGNTTSGR 97
          TRAADGNSSDTSDFNLLDSGNTTSGR
Sbjct: 61 TRAADGNSSDTSDFNLLDSGNTTSGR 86

[Close]

BLAST of Cp4.1LG10g08770 vs. NCBI nr
Match: XP_038883060.1 (uncharacterized protein LOC120074114 [Benincasa hispida])

HSP 1 Score: 170 bits (431), Expect = 6.88e-53
Identity = 84/95 (88.42%), Postives = 90/95 (94.74%), Query Frame = 0


Query: 1  MEDDPSASYIHMVHHLIEQCIIFNMNKEECMEALSKHANIKPVITSTVWNELEKENKEFF 60
          M+DDPSASYIHMVHHLIE+CIIFNM KEECMEALSKHANIKPVITSTVWNELEKENKEFF
Sbjct: 1  MDDDPSASYIHMVHHLIEKCIIFNMTKEECMEALSKHANIKPVITSTVWNELEKENKEFF 60

Query: 61 EAYKKKRRDVTTRAADGNSSDTSDFNLLDSGNTTS 95
          EAYKKKRRDVT + ++GNSSDTSDFNLL S +TTS
Sbjct: 61 EAYKKKRRDVTVKVSEGNSSDTSDFNLLGSRDTTS 95

[Close]

BLAST of Cp4.1LG10g08770 vs. ExPASy TrEMBL
Match: A0A6J1IHY2 (uncharacterized protein LOC111477620 OS=Cucurbita maxima OX=3661 GN=LOC111477620 PE=4 SV=1)

HSP 1 Score: 189 bits (481), Expect = 7.37e-61
Identity = 94/97 (96.91%), Postives = 96/97 (98.97%), Query Frame = 0


Query: 1  MEDDPSASYIHMVHHLIEQCIIFNMNKEECMEALSKHANIKPVITSTVWNELEKENKEFF 60
          MEDDPSASYIHMVHHLIEQCI+FNMNKEECMEALSKHANIKPVITSTVWNELEKENKEFF
Sbjct: 1  MEDDPSASYIHMVHHLIEQCIVFNMNKEECMEALSKHANIKPVITSTVWNELEKENKEFF 60

Query: 61 EAYKKKRRDVTTRAADGNSSDTSDFNLLDSGNTTSGR 97
          EAYKKKRRDVTTRAADG SSDTSDFNLLDSG+TTSGR
Sbjct: 61 EAYKKKRRDVTTRAADGTSSDTSDFNLLDSGDTTSGR 97

[Close]

BLAST of Cp4.1LG10g08770 vs. ExPASy TrEMBL
Match: A0A6J1GEA1 (uncharacterized protein LOC111453395 OS=Cucurbita moschata OX=3662 GN=LOC111453395 PE=4 SV=1)

HSP 1 Score: 170 bits (431), Expect = 2.24e-53
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 12 MVHHLIEQCIIFNMNKEECMEALSKHANIKPVITSTVWNELEKENKEFFEAYKKKRRDVT 71
          MVHHLIEQCIIFNMNKEECMEALSKHANIKPVITSTVWNELEKENKEFFEAYKKKRRDVT
Sbjct: 1  MVHHLIEQCIIFNMNKEECMEALSKHANIKPVITSTVWNELEKENKEFFEAYKKKRRDVT 60

Query: 72 TRAADGNSSDTSDFNLLDSGNTTSGR 97
          TRAADGNSSDTSDFNLLDSGNTTSGR
Sbjct: 61 TRAADGNSSDTSDFNLLDSGNTTSGR 86

[Close]

BLAST of Cp4.1LG10g08770 vs. ExPASy TrEMBL
Match: A0A0A0KZG8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G293290 PE=4 SV=1)

HSP 1 Score: 159 bits (401), Expect = 1.18e-48
Identity = 80/95 (84.21%), Postives = 89/95 (93.68%), Query Frame = 0


Query: 1  MEDDPSASYIHMVHHLIEQCIIFNMNKEECMEALSKHANIKPVITSTVWNELEKENKEFF 60
          M+DDPSASYIHMVHHLIE+CIIFNM KEEC+EALSKHANI+PVITSTVWNELEKENKEFF
Sbjct: 1  MDDDPSASYIHMVHHLIEKCIIFNMTKEECLEALSKHANIEPVITSTVWNELEKENKEFF 60

Query: 61 EAYKKKRRDVTTRAADGNSSDTSDFNLLDSGNTTS 95
          EAYKKKRRDVTT+   G+SS+T+DFNLL S +TTS
Sbjct: 61 EAYKKKRRDVTTKK--GSSSETTDFNLLGSRDTTS 93

[Close]

BLAST of Cp4.1LG10g08770 vs. ExPASy TrEMBL
Match: A0A6J1IAZ7 (uncharacterized protein LOC111471258 OS=Cucurbita maxima OX=3661 GN=LOC111471258 PE=4 SV=1)

HSP 1 Score: 158 bits (400), Expect = 2.21e-48
Identity = 81/96 (84.38%), Postives = 88/96 (91.67%), Query Frame = 0


Query: 1  MEDDPSASYIHMVHHLIEQCIIFNMNKEECMEALSKHANIKPVITSTVWNELEKENKEFF 60
          MEDDPSASYIHMVHHLIE CI+FNM+KEECMEALSKHANI+PVITSTVWNELEKENKEFF
Sbjct: 1  MEDDPSASYIHMVHHLIEICILFNMSKEECMEALSKHANIEPVITSTVWNELEKENKEFF 60

Query: 61 EAYKKKRRDVTTRAADGNSS-DTSDFNLLDSGNTTS 95
          +AY+KKRRDVTTR  +GNSS DT  FNLL  G+TTS
Sbjct: 61 QAYEKKRRDVTTRKLEGNSSSDTLGFNLLGLGDTTS 96

[Close]

BLAST of Cp4.1LG10g08770 vs. ExPASy TrEMBL
Match: A0A6J1HDK1 (uncharacterized protein LOC111463185 OS=Cucurbita moschata OX=3662 GN=LOC111463185 PE=4 SV=1)

HSP 1 Score: 156 bits (394), Expect = 1.46e-47
Identity = 80/95 (84.21%), Postives = 87/95 (91.58%), Query Frame = 0


Query: 1  MEDDPSASYIHMVHHLIEQCIIFNMNKEECMEALSKHANIKPVITSTVWNELEKENKEFF 60
          MEDDPSASYIHMVHHLIE  I+FNM+KEECMEALSKHANI+PV+TSTVWNELEKENKEFF
Sbjct: 1  MEDDPSASYIHMVHHLIEISILFNMSKEECMEALSKHANIEPVVTSTVWNELEKENKEFF 60

Query: 61 EAYKKKRRDVTTRAADGNSS-DTSDFNLLDSGNTT 94
          EAY+KKRRDVTTR  +GNSS DTS FNLL  G+TT
Sbjct: 61 EAYEKKRRDVTTRKLEGNSSSDTSAFNLLGLGDTT 95

[Close]

BLAST of Cp4.1LG10g08770 vs. TAIR 10
Match: AT5G02580.1 (Plant protein 1589 of unknown function )

HSP 1 Score: 115.2 bits (287), Expect = 3.0e-26
Identity = 50/66 (75.76%), Postives = 60/66 (90.91%), Query Frame = 0


Query: 7  ASYIHMVHHLIEQCIIFNMNKEECMEALSKHANIKPVITSTVWNELEKENKEFFEAYKKK 66
          ASYIH+VHHLIE+CI+FNM KEECM+AL KHANIKP+ITSTVW EL KENKEFFEAY+++
Sbjct: 9  ASYIHLVHHLIEECIVFNMGKEECMDALFKHANIKPIITSTVWKELAKENKEFFEAYERR 68

Query: 67 RRDVTT 73
          R ++ T
Sbjct: 69 REEIPT 74

[Close]

BLAST of Cp4.1LG10g08770 vs. TAIR 10
Match: AT3G55240.1 (Plant protein 1589 of unknown function )

HSP 1 Score: 110.9 bits (276), Expect = 5.7e-25
Identity = 50/67 (74.63%), Postives = 61/67 (91.04%), Query Frame = 0


Query: 1  MEDDPSASYIHMVHHLIEQCIIFNMNKEECMEALSKHANIKPVITSTVWNELEKENKEFF 60
          M D  SASYIHMV H+IE+C+IF+M+KEEC+EALSKHANI PVITSTVW ELEKENKEFF
Sbjct: 1  MADSSSASYIHMVQHMIEKCLIFHMSKEECVEALSKHANITPVITSTVWKELEKENKEFF 60

Query: 61 EAYKKKR 68
          +AY++++
Sbjct: 61 KAYEERQ 67

[Close]

BLAST of Cp4.1LG10g08770 vs. TAIR 10
Match: AT3G28990.1 (Plant protein 1589 of unknown function )

HSP 1 Score: 97.1 bits (240), Expect = 8.5e-21
Identity = 43/66 (65.15%), Postives = 53/66 (80.30%), Query Frame = 0


Query: 1  MEDDPSASYIHMVHHLIEQCIIFNMNKEECMEALSKHANIKPVITSTVWNELEKENKEFF 60
          M     A YIH+V H+IE C+ FNM+KEECMEALS++ANI P+ITSTVW EL KENK+FF
Sbjct: 1  MRHSSPAVYIHLVQHMIETCLTFNMSKEECMEALSENANINPIITSTVWKELVKENKDFF 60

Query: 61 EAYKKK 67
          E Y++K
Sbjct: 61 ETYEQK 66

[Close]

BLAST of Cp4.1LG10g08770 vs. TAIR 10
Match: AT5G02580.2 (Plant protein 1589 of unknown function )

HSP 1 Score: 79.3 bits (194), Expect = 1.8e-15
Identity = 34/41 (82.93%), Postives = 39/41 (95.12%), Query Frame = 0


Query: 7  ASYIHMVHHLIEQCIIFNMNKEECMEALSKHANIKPVITST 48
          ASYIH+VHHLIE+CI+FNM KEECM+AL KHANIKP+ITST
Sbjct: 9  ASYIHLVHHLIEECIVFNMGKEECMDALFKHANIKPIITST 49

[Close]

BLAST of Cp4.1LG10g08770 vs. TAIR 10
Match: AT1G10657.2 (Plant protein 1589 of unknown function )

HSP 1 Score: 76.3 bits (186), Expect = 1.6e-14
Identity = 31/56 (55.36%), Postives = 44/56 (78.57%), Query Frame = 0


Query: 8  SYIHMVHHLIEQCIIFNMNKEECMEALSKHANIKPVITSTVWNELEKENKEFFEAY 64
          SYI MV H+IE+CI+  M ++EC++AL  HA+I P++T TVW  L++ENK+FFE Y
Sbjct: 22 SYIRMVQHMIERCILLRMTRDECVKALDHHASILPLVTLTVWRGLQRENKDFFETY 77

The following BLAST results are available for this feature:

BLAST of Cp4.1LG10g08770 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG10g08770 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023544368.1	2.24e-62	100.00	uncharacterized protein LOC111803972 [Cucurbita pepo subsp. pepo] >KAG7033856.1 ...	[more]
KAG6603679.1	6.44e-62	98.97	hypothetical protein SDJN03_04288, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022977252.1	1.52e-60	96.91	uncharacterized protein LOC111477620 [Cucurbita maxima]	[more]
XP_022950247.1	4.62e-53	100.00	uncharacterized protein LOC111453395 [Cucurbita moschata]	[more]
XP_038883060.1	6.88e-53	88.42	uncharacterized protein LOC120074114 [Benincasa hispida]	[more]

BLAST of Cp4.1LG10g08770 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IHY2	7.37e-61	96.91	uncharacterized protein LOC111477620 OS=Cucurbita maxima OX=3661 GN=LOC111477620...	[more]
A0A6J1GEA1	2.24e-53	100.00	uncharacterized protein LOC111453395 OS=Cucurbita moschata OX=3662 GN=LOC1114533...	[more]
A0A0A0KZG8	1.18e-48	84.21	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G293290 PE=4 SV=1	[more]
A0A6J1IAZ7	2.21e-48	84.38	uncharacterized protein LOC111471258 OS=Cucurbita maxima OX=3661 GN=LOC111471258...	[more]
A0A6J1HDK1	1.46e-47	84.21	uncharacterized protein LOC111463185 OS=Cucurbita moschata OX=3662 GN=LOC1114631...	[more]

BLAST of Cp4.1LG10g08770 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G02580.1	3.0e-26	75.76	Plant protein 1589 of unknown function	[more]
AT3G55240.1	5.7e-25	74.63	Plant protein 1589 of unknown function	[more]
AT3G28990.1	8.5e-21	65.15	Plant protein 1589 of unknown function	[more]
AT5G02580.2	1.8e-15	82.93	Plant protein 1589 of unknown function	[more]
AT1G10657.2	1.6e-14	55.36	Plant protein 1589 of unknown function	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006476	Conserved hypothetical protein CHP01589, plant	PFAM	PF09713	A_thal_3526	coord: 13..64 e-value: 1.9E-27 score: 95.3
IPR006476	Conserved hypothetical protein CHP01589, plant	TIGRFAM	TIGR01589	TIGR01589	coord: 10..65 e-value: 3.3E-25 score: 85.8
IPR006476	Conserved hypothetical protein CHP01589, plant	PANTHER	PTHR31871	OS02G0137100 PROTEIN	coord: 1..72
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 70..97
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 75..97
None	No IPR available	PANTHER	PTHR31871:SF2	ARGININOSUCCINATE LYASE	coord: 1..72

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG10g08770.1	Cp4.1LG10g08770.1	mRNA