Cp4.1LG10g08540 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG10g08540
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionDNA polymerase, beta-like region
LocationCp4.1LG10: 5073283 .. 5073894 (+)
RNA-Seq ExpressionCp4.1LG10g08540
SyntenyCp4.1LG10g08540
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGCTTCTCCGCCGTCGACGGCGGTGGAGCATGTGGTATCCCACGTGTCCCGCTGCTCTTCTTTGGACCGTACGACTTCCGAAGACATTTGATATGTACGTTGACTCTACAACCATCGCATCCGTACACCCACAAAGAACAACAATCAATTCCACAAACCCCACAATTCCCAAACGACGATTTCTGGAGCCTCAAGCTATGGTAGTCGTCGATGACGTGGCGAACCTTCTCCGGCAGCTGAGTACAAAGTGGGTGAACATCAAAGTCGCAGTGGCTGCAACGGTAGGACACGCCGTCGATGGATTCACGGCAAATGTCACAGATGGTCGTCGTCCGGTGATGGGTTTGGGGTTTAGAGAGAATGAGAGAGAGTGGGTGGCTGTGGAAGGAGGAGGAGAGTTGGTGGGGGCAATTAGCGCAGTACACGTGGATTTCGGCGATGCAGACGTGGCATTGGAATCTGTCGCCGAAACCGGTGGTTTTGCAGGCGTGGCAGATGTAATTGGCTTGGTCGGTTGTGTTGTGAATGAGATGGTGGTTTGGATGGACATGGGAGAAGTGGGGGTTGAGATTCTTGGTCAATGCAGCCATTTCTGTGTCTATTTGTGA

mRNA sequence

ATGAGGCTTCTCCGCCGTCGACGGCGGTGGAGCATGTGGTATCCCACGTGTCCCGCTGCTCTTCTTTGGACCGTACGACTTCCGAAGACATTTGATATGTACGTTGACTCTACAACCATCGCATCCGTACACCCACAAAGAACAACAATCAATTCCACAAACCCCACAATTCCCAAACGACGATTTCTGGAGCCTCAAGCTATGGTAGTCGTCGATGACGTGGCGAACCTTCTCCGGCAGCTGAGTACAAAGTGGGTGAACATCAAAGTCGCAGTGGCTGCAACGGTAGGACACGCCGTCGATGGATTCACGGCAAATGTCACAGATGGTCGTCGTCCGGTGATGGGTTTGGGGTTTAGAGAGAATGAGAGAGAGTGGGTGGCTGTGGAAGGAGGAGGAGAGTTGGTGGGGGCAATTAGCGCAGTACACGTGGATTTCGGCGATGCAGACGTGGCATTGGAATCTGTCGCCGAAACCGGTGGTTTTGCAGGCGTGGCAGATGTAATTGGCTTGGTCGGTTGTGTTGTGAATGAGATGGTGGTTTGGATGGACATGGGAGAAGTGGGGGTTGAGATTCTTGGTCAATGCAGCCATTTCTGTGTCTATTTGTGA

Coding sequence (CDS)

ATGAGGCTTCTCCGCCGTCGACGGCGGTGGAGCATGTGGTATCCCACGTGTCCCGCTGCTCTTCTTTGGACCGTACGACTTCCGAAGACATTTGATATGTACGTTGACTCTACAACCATCGCATCCGTACACCCACAAAGAACAACAATCAATTCCACAAACCCCACAATTCCCAAACGACGATTTCTGGAGCCTCAAGCTATGGTAGTCGTCGATGACGTGGCGAACCTTCTCCGGCAGCTGAGTACAAAGTGGGTGAACATCAAAGTCGCAGTGGCTGCAACGGTAGGACACGCCGTCGATGGATTCACGGCAAATGTCACAGATGGTCGTCGTCCGGTGATGGGTTTGGGGTTTAGAGAGAATGAGAGAGAGTGGGTGGCTGTGGAAGGAGGAGGAGAGTTGGTGGGGGCAATTAGCGCAGTACACGTGGATTTCGGCGATGCAGACGTGGCATTGGAATCTGTCGCCGAAACCGGTGGTTTTGCAGGCGTGGCAGATGTAATTGGCTTGGTCGGTTGTGTTGTGAATGAGATGGTGGTTTGGATGGACATGGGAGAAGTGGGGGTTGAGATTCTTGGTCAATGCAGCCATTTCTGTGTCTATTTGTGA

Protein sequence

MRLLRRRRRWSMWYPTCPAALLWTVRLPKTFDMYVDSTTIASVHPQRTTINSTNPTIPKRRFLEPQAMVVVDDVANLLRQLSTKWVNIKVAVAATVGHAVDGFTANVTDGRRPVMGLGFRENEREWVAVEGGGELVGAISAVHVDFGDADVALESVAETGGFAGVADVIGLVGCVVNEMVVWMDMGEVGVEILGQCSHFCVYL
Homology
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BLAST of Cp4.1LG10g08540 vs. ExPASy TrEMBL
Match: A0A0A0KXM9 (DNA polymerase, beta-like region OS=Cucumis sativus OX=3659 GN=Csa_4G297430 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 2.75e-16
Identity = 46/100 (46.00%), Postives = 64/100 (64.00%), Query Frame = 0 

Query: 8   RRWSMWYPTCPAALLWTVRLPKTFDMYVDSTTIASVHPQRTTINSTNPTIPKRRFLEPQA 67
           RR ++ YPT   +   TVRL   F M +DST +A+++P+R TI   N    +    E + 
Sbjct: 37  RRLAIRYPT--GSRRRTVRLENAFGMNIDSTNVAAINPERRTILFANRASARGELAEGEF 96

Query: 68  MVVVDDVANLLRQLSTKWVNIKVAVAATVGHAVDGFTANV 107
           M  VD+VA LLR+L  KW++I+VAV A V HAVDGFTA++
Sbjct: 97  MAAVDEVAELLRELGAKWMDIEVAVIAAVEHAVDGFTADI 134

The following BLAST results are available for this feature:
BLAST of Cp4.1LG10g08540 vs.
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG10g08540 vs.
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG10g08540 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KXM92.75e-1646.00DNA polymerase, beta-like region OS=Cucumis sativus OX=3659 GN=Csa_4G297430 PE=4... [more]
BLAST of Cp4.1LG10g08540 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG10g08540.1Cp4.1LG10g08540.1mRNA