Cp4.1LG10g08470 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG10g08470
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Cyclin-dependent protein kinase inhibitor SMR4
Location	Cp4.1LG10: 5035772 .. 5035996 (+)
RNA-Seq Expression	Cp4.1LG10g08470
Synteny	Cp4.1LG10g08470

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAAGACCGATGCGAGATCCGCTACGAATGGCAACGAATGTCTGACGCCGAGGAACTGCGCTTTTAGAATTCCGGCGGCATCCAAATGCCCGCCACCGCCGAAGAAGAAAGCGGTCACTGGTCGGAAGCAGCCTCCACCGACGAGCGGGTATTTCCACCCTCCCGATCTCGATGCTTTGTTTTCCATGCCGCCTTCATCACGATGGGAAGCTTGTGTTTAG

mRNA sequence

ATGGAGAAGACCGATGCGAGATCCGCTACGAATGGCAACGAATGTCTGACGCCGAGGAACTGCGCTTTTAGAATTCCGGCGGCATCCAAATGCCCGCCACCGCCGAAGAAGAAAGCGGTCACTGGTCGGAAGCAGCCTCCACCGACGAGCGGGTATTTCCACCCTCCCGATCTCGATGCTTTGTTTTCCATGCCGCCTTCATCACGATGGGAAGCTTGTGTTTAG

Coding sequence (CDS)

ATGGAGAAGACCGATGCGAGATCCGCTACGAATGGCAACGAATGTCTGACGCCGAGGAACTGCGCTTTTAGAATTCCGGCGGCATCCAAATGCCCGCCACCGCCGAAGAAGAAAGCGGTCACTGGTCGGAAGCAGCCTCCACCGACGAGCGGGTATTTCCACCCTCCCGATCTCGATGCTTTGTTTTCCATGCCGCCTTCATCACGATGGGAAGCTTGTGTTTAG

Protein sequence

MEKTDARSATNGNECLTPRNCAFRIPAASKCPPPPKKKAVTGRKQPPPTSGYFHPPDLDALFSMPPSSRWEACV

Homology

[Close]

BLAST of Cp4.1LG10g08470 vs. ExPASy Swiss-Prot
Match: Q1JPP8 (Cyclin-dependent protein kinase inhibitor SMR4 OS=Arabidopsis thaliana OX=3702 GN=SMR4 PE=1 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.8e-12
Identity = 36/73 (49.32%), Postives = 46/73 (63.01%), Query Frame = 0


Query: 1  MEKTDARSATNGNECLTPRNCAFRIPAASKCPPPPKKKAVTGRKQPPPTSGYFHPPDLDA 60
          ME  + ++      C TPR+  +RIP AS CPPPP+KK +  RK+ PP +GYF PPDL+ 
Sbjct: 1  MEVVERKTEMAEEGCTTPRSTMYRIPVASVCPPPPRKKLMVVRKRDPPRNGYFQPPDLET 60

Query: 61 LFSMPPSSRWEAC 74
          LF   P  R EAC
Sbjct: 61 LFYAQP--RREAC 71

[Close]

BLAST of Cp4.1LG10g08470 vs. ExPASy Swiss-Prot
Match: Q9LNX4 (Cyclin-dependent protein kinase inhibitor SMR5 OS=Arabidopsis thaliana OX=3702 GN=SMR5 PE=1 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 2.6e-06
Identity = 27/58 (46.55%), Postives = 34/58 (58.62%), Query Frame = 0


Query: 15 CLTPRNCAFRIPAASKCPPPPKKKAVT---GRKQPPPTSGYFHPPDLDALFSMPPSSR 70
          C TP     RIPA   CPPP ++K      G+K+ PP  GYF PPDLD  FS+  +S+
Sbjct: 22 CTTPTRDDCRIPAYPPCPPPVRRKRSLLGFGKKREPPKKGYFQPPDLDLFFSVVAASQ 79

[Close]

BLAST of Cp4.1LG10g08470 vs. NCBI nr
Match: KAG6603646.1 (Cyclin-dependent protein kinase inhibitor SMR4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7033830.1 Cyclin-dependent protein kinase inhibitor SMR4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 162 bits (410), Expect = 1.99e-50
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 1  MEKTDARSATNGNECLTPRNCAFRIPAASKCPPPPKKKAVTGRKQPPPTSGYFHPPDLDA 60
          MEKTDARSATNGNECLTPRNCAFRIPAASKCPPPPKKKAVTGRKQPPPTSGYFHPPDLDA
Sbjct: 1  MEKTDARSATNGNECLTPRNCAFRIPAASKCPPPPKKKAVTGRKQPPPTSGYFHPPDLDA 60

Query: 61 LFSMPPSSRWEACV 74
          LFSMPPSSRWEACV
Sbjct: 61 LFSMPPSSRWEACV 74

[Close]

BLAST of Cp4.1LG10g08470 vs. NCBI nr
Match: KAA0032664.1 (cyclin-dependent protein kinase inhibitor SMR2 [Cucumis melo var. makuwa] >TYK23544.1 cyclin-dependent protein kinase inhibitor SMR2 [Cucumis melo var. makuwa])

HSP 1 Score: 119 bits (299), Expect = 1.79e-33
Identity = 57/74 (77.03%), Postives = 61/74 (82.43%), Query Frame = 0


Query: 1  MEKTDARSATNGNECLTPRNCAFRIPAASKCPPPPKKKAVTGRKQPPPTSGYFHPPDLDA 60
          MEKTD     NG+ECLTP++ A RIP  SKCPPPPKKKAVTGRK  PPTSGYF PPDLDA
Sbjct: 6  MEKTDK----NGDECLTPKSYACRIPTFSKCPPPPKKKAVTGRKLAPPTSGYFQPPDLDA 65

Query: 61 LFSMPPSSRWEACV 74
          LFS+PPSSRWEAC 
Sbjct: 66 LFSIPPSSRWEACA 75

[Close]

BLAST of Cp4.1LG10g08470 vs. NCBI nr
Match: KGN54563.2 (hypothetical protein Csa_017876 [Cucumis sativus])

HSP 1 Score: 113 bits (282), Expect = 8.54e-31
Identity = 53/72 (73.61%), Postives = 57/72 (79.17%), Query Frame = 0


Query: 1  MEKTDARSATNGNECLTPRNCAFRIPAASKCPPPPKKKAVTGRKQPPPTSGYFHPPDLDA 60
          MEKTD     NG+ECLTP++CA RIP   KCPPPPKKK+ TGRK  PPT GYF PPDLD 
Sbjct: 6  MEKTDK----NGDECLTPKSCACRIPKVFKCPPPPKKKSFTGRKLAPPTRGYFQPPDLDT 65

Query: 61 LFSMPPSSRWEA 72
          LFSMPPSSRWEA
Sbjct: 66 LFSMPPSSRWEA 73

[Close]

BLAST of Cp4.1LG10g08470 vs. NCBI nr
Match: KAG7012399.1 (Cyclin-dependent protein kinase inhibitor SMR4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 106 bits (264), Expect = 1.33e-27
Identity = 50/60 (83.33%), Postives = 53/60 (88.33%), Query Frame = 0


Query: 13 NECLTPRNCAFRIPAASKCPPPPKKKAVTGRKQPPPTSGYFHPPDLDALFSMPPSSRWEA 72
          NEC+TPRN AFRIPAASKCPP  ++KAV   KQP PTSGYFHPPDLDALFSMPPSSRWEA
Sbjct: 9  NECVTPRNGAFRIPAASKCPPTAEEKAVHWPKQPLPTSGYFHPPDLDALFSMPPSSRWEA 68

[Close]

BLAST of Cp4.1LG10g08470 vs. NCBI nr
Match: KAF4373031.1 (hypothetical protein F8388_011058 [Cannabis sativa] >KAF4377526.1 hypothetical protein F8388_025017 [Cannabis sativa] >KAF4388576.1 hypothetical protein G4B88_021487 [Cannabis sativa])

HSP 1 Score: 82.0 bits (201), Expect = 1.45e-18
Identity = 37/74 (50.00%), Postives = 49/74 (66.22%), Query Frame = 0


Query: 1  MEKTDARSATNGNECLTPRNCAFRIPAASKCPPPPKKKAVTGRKQPPPTSGYFHPPDLDA 60
          ME+ +      G +C TP+    RIP    CPPPPKKK+++G K+ PP +GYFHPPDLD+
Sbjct: 1  MEEYERSDTMEGEDCTTPKRRECRIPETFVCPPPPKKKSMSGTKRQPPKNGYFHPPDLDS 60

Query: 61 LFSMPPSSRWEACV 74
          LF +P  SR +AC 
Sbjct: 61 LFVIP--SRGQACA 72

[Close]

BLAST of Cp4.1LG10g08470 vs. ExPASy TrEMBL
Match: A0A5A7SNA9 (Cyclin-dependent protein kinase inhibitor SMR2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold500G00480 PE=4 SV=1)

HSP 1 Score: 119 bits (299), Expect = 8.65e-34
Identity = 57/74 (77.03%), Postives = 61/74 (82.43%), Query Frame = 0


Query: 1  MEKTDARSATNGNECLTPRNCAFRIPAASKCPPPPKKKAVTGRKQPPPTSGYFHPPDLDA 60
          MEKTD     NG+ECLTP++ A RIP  SKCPPPPKKKAVTGRK  PPTSGYF PPDLDA
Sbjct: 6  MEKTDK----NGDECLTPKSYACRIPTFSKCPPPPKKKAVTGRKLAPPTSGYFQPPDLDA 65

Query: 61 LFSMPPSSRWEACV 74
          LFS+PPSSRWEAC 
Sbjct: 66 LFSIPPSSRWEACA 75

[Close]

BLAST of Cp4.1LG10g08470 vs. ExPASy TrEMBL
Match: A0A0A0KXI9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G296170 PE=4 SV=1)

HSP 1 Score: 117 bits (292), Expect = 1.01e-32
Identity = 54/74 (72.97%), Postives = 58/74 (78.38%), Query Frame = 0


Query: 1  MEKTDARSATNGNECLTPRNCAFRIPAASKCPPPPKKKAVTGRKQPPPTSGYFHPPDLDA 60
          MEKTD     NG+ECLTP++CA RIP   KCPPPPKKK+ TGRK  PPT GYF PPDLD 
Sbjct: 6  MEKTDK----NGDECLTPKSCACRIPKVFKCPPPPKKKSFTGRKLAPPTRGYFQPPDLDT 65

Query: 61 LFSMPPSSRWEACV 74
          LFSMPPSSRWEAC 
Sbjct: 66 LFSMPPSSRWEACT 75

[Close]

BLAST of Cp4.1LG10g08470 vs. ExPASy TrEMBL
Match: A0A7J6H051 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_011058 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 7.01e-19
Identity = 37/74 (50.00%), Postives = 49/74 (66.22%), Query Frame = 0


Query: 1  MEKTDARSATNGNECLTPRNCAFRIPAASKCPPPPKKKAVTGRKQPPPTSGYFHPPDLDA 60
          ME+ +      G +C TP+    RIP    CPPPPKKK+++G K+ PP +GYFHPPDLD+
Sbjct: 1  MEEYERSDTMEGEDCTTPKRRECRIPETFVCPPPPKKKSMSGTKRQPPKNGYFHPPDLDS 60

Query: 61 LFSMPPSSRWEACV 74
          LF +P  SR +AC 
Sbjct: 61 LFVIP--SRGQACA 72

[Close]

BLAST of Cp4.1LG10g08470 vs. ExPASy TrEMBL
Match: B9SZZ7 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0452270 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.19e-17
Identity = 36/70 (51.43%), Postives = 44/70 (62.86%), Query Frame = 0


Query: 1  MEKTDARSATNGNECLTPRNCAFRIPAASKCPPPPKKKAVTGRKQPPPTSGYFHPPDLDA 60
          +E+    S   G EC TPR+   RIP    CPPPP+KK+ TG K+ PP +GYF PPDLD 
Sbjct: 3  IEERFRDSNGGGEECRTPRSRECRIPLVFVCPPPPRKKSATGTKRDPPKNGYFQPPDLDL 62

Query: 61 LFSMPPSSRW 70
          L S+PP   W
Sbjct: 63 LLSVPPRKAW 72

[Close]

BLAST of Cp4.1LG10g08470 vs. ExPASy TrEMBL
Match: W9RWM9 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_009438 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.93e-17
Identity = 36/64 (56.25%), Postives = 45/64 (70.31%), Query Frame = 0


Query: 11 NGNECLTPRNCAFRIPAASKCPPPPKKKAVTGRKQPPPTSGYFHPPDLDALFSMPPSSRW 70
          +  +C TP+    RIP A  CPPPP+KK+V G K+PPP +GYF PPDLD+LF MP  SR 
Sbjct: 17 DSEDCTTPKRRECRIPEAFVCPPPPRKKSVIGAKRPPPKNGYFQPPDLDSLFLMP--SRR 76

Query: 71 EACV 74
          +AC 
Sbjct: 77 QACA 78

[Close]

BLAST of Cp4.1LG10g08470 vs. TAIR 10
Match: AT5G02220.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 72.8 bits (177), Expect = 1.3e-13
Identity = 36/73 (49.32%), Postives = 46/73 (63.01%), Query Frame = 0


Query: 1  MEKTDARSATNGNECLTPRNCAFRIPAASKCPPPPKKKAVTGRKQPPPTSGYFHPPDLDA 60
          ME  + ++      C TPR+  +RIP AS CPPPP+KK +  RK+ PP +GYF PPDL+ 
Sbjct: 1  MEVVERKTEMAEEGCTTPRSTMYRIPVASVCPPPPRKKLMVVRKRDPPRNGYFQPPDLET 60

Query: 61 LFSMPPSSRWEAC 74
          LF   P  R EAC
Sbjct: 61 LFYAQP--RREAC 71

The following BLAST results are available for this feature:

BLAST of Cp4.1LG10g08470 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1JPP8	1.8e-12	49.32	Cyclin-dependent protein kinase inhibitor SMR4 OS=Arabidopsis thaliana OX=3702 G...	[more]
Q9LNX4	2.6e-06	46.55	Cyclin-dependent protein kinase inhibitor SMR5 OS=Arabidopsis thaliana OX=3702 G...	[more]

BLAST of Cp4.1LG10g08470 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6603646.1	1.99e-50	100.00	Cyclin-dependent protein kinase inhibitor SMR4, partial [Cucurbita argyrosperma ...	[more]
KAA0032664.1	1.79e-33	77.03	cyclin-dependent protein kinase inhibitor SMR2 [Cucumis melo var. makuwa] >TYK23...	[more]
KGN54563.2	8.54e-31	73.61	hypothetical protein Csa_017876 [Cucumis sativus]	[more]
KAG7012399.1	1.33e-27	83.33	Cyclin-dependent protein kinase inhibitor SMR4, partial [Cucurbita argyrosperma ...	[more]
KAF4373031.1	1.45e-18	50.00	hypothetical protein F8388_011058 [Cannabis sativa] >KAF4377526.1 hypothetical p...	[more]

BLAST of Cp4.1LG10g08470 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SNA9	8.65e-34	77.03	Cyclin-dependent protein kinase inhibitor SMR2 OS=Cucumis melo var. makuwa OX=11...	[more]
A0A0A0KXI9	1.01e-32	72.97	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G296170 PE=4 SV=1	[more]
A0A7J6H051	7.01e-19	50.00	Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_011058 PE=4 SV=1	[more]
B9SZZ7	1.19e-17	51.43	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0452270 PE=4 SV=1	[more]
W9RWM9	1.93e-17	56.25	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_009438 PE=4 SV=1	[more]

BLAST of Cp4.1LG10g08470 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G02220.1	1.3e-13	49.32	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..57
None	No IPR available	PANTHER	PTHR33142:SF53	SUBFAMILY NOT NAMED	coord: 5..68
IPR040389	Cyclin-dependent protein kinase inhibitor SMR	PANTHER	PTHR33142	CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR SMR13	coord: 5..68

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG10g08470.1	Cp4.1LG10g08470.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006620	posttranslational protein targeting to endoplasmic reticulum membrane
biological_process	GO:0032875	regulation of DNA endoreduplication
biological_process	GO:0030433	ubiquitin-dependent ERAD pathway
cellular_component	GO:0016020	membrane
cellular_component	GO:0072380	TRC complex
molecular_function	GO:0060090	molecular adaptor activity