Cp4.1LG10g08230 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG10g08230
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG10: 5128988 .. 5129353 (+)
RNA-Seq ExpressionCp4.1LG10g08230
SyntenyCp4.1LG10g08230
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTCCATTTCTATTCCTTCTCTTCATCTTCGCCAATGCTCTTCTTGGTTCTGTCGCTGTCGGAGCCGCTCCATCACCGACCGCGGCCGAACCACCTTCCGGCAGAAAGCTCGGGAAGCACCACAGTACGGCGGTTGTTTTTTCGAGTCCGTCTGAAGCACCGCGACGTGAAAAGAAAGTCTCGACGGCGAACGACGGTGGTACGGGGAATGAGATTGAATTGGAAAATCATGAGCATCATAAGTCGATAGATAAGTCTGTCGCCGGCGGTGGCGTGATATTGGGCGGACTCGCCACCACGTTTTTGGTGGCGATTGTATGTTACATTAGAGCTACGAGGCGACAGAGTGAAGTTAGCCTCTGA

mRNA sequence

ATGCCTCCATTTCTATTCCTTCTCTTCATCTTCGCCAATGCTCTTCTTGGTTCTGTCGCTGTCGGAGCCGCTCCATCACCGACCGCGGCCGAACCACCTTCCGGCAGAAAGCTCGGGAAGCACCACAGTACGGCGGTTGTTTTTTCGAGTCCGTCTGAAGCACCGCGACGTGAAAAGAAAGTCTCGACGGCGAACGACGGTGGTACGGGGAATGAGATTGAATTGGAAAATCATGAGCATCATAAGTCGATAGATAAGTCTGTCGCCGGCGGTGGCGTGATATTGGGCGGACTCGCCACCACGTTTTTGGTGGCGATTGTATGTTACATTAGAGCTACGAGGCGACAGAGTGAAGTTAGCCTCTGA

Coding sequence (CDS)

ATGCCTCCATTTCTATTCCTTCTCTTCATCTTCGCCAATGCTCTTCTTGGTTCTGTCGCTGTCGGAGCCGCTCCATCACCGACCGCGGCCGAACCACCTTCCGGCAGAAAGCTCGGGAAGCACCACAGTACGGCGGTTGTTTTTTCGAGTCCGTCTGAAGCACCGCGACGTGAAAAGAAAGTCTCGACGGCGAACGACGGTGGTACGGGGAATGAGATTGAATTGGAAAATCATGAGCATCATAAGTCGATAGATAAGTCTGTCGCCGGCGGTGGCGTGATATTGGGCGGACTCGCCACCACGTTTTTGGTGGCGATTGTATGTTACATTAGAGCTACGAGGCGACAGAGTGAAGTTAGCCTCTGA

Protein sequence

MPPFLFLLFIFANALLGSVAVGAAPSPTAAEPPSGRKLGKHHSTAVVFSSPSEAPRREKKVSTANDGGTGNEIELENHEHHKSIDKSVAGGGVILGGLATTFLVAIVCYIRATRRQSEVSL
Homology
BLAST of Cp4.1LG10g08230 vs. NCBI nr
Match: KAG6603622.1 (hypothetical protein SDJN03_04231, partial [Cucurbita argyrosperma subsp. sororia] >KAG7033809.1 hypothetical protein SDJN02_03534, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 226 bits (575), Expect = 8.37e-74
Identity = 118/121 (97.52%), Postives = 118/121 (97.52%), Query Frame = 0

Query: 1   MPPFLFLLFIFANALLGSVAVGAAPSPTAAEPPSGRKLGKHHSTAVVFSSPSEAPRREKK 60
           M PFLFLLFIFANALLGSVAVGAAP PTAAEPPSGRKLGKHHSTAVVFSSPSEAPR EKK
Sbjct: 23  MAPFLFLLFIFANALLGSVAVGAAPPPTAAEPPSGRKLGKHHSTAVVFSSPSEAPRSEKK 82

Query: 61  VSTANDGGTGNEIELENHEHHKSIDKSVAGGGVILGGLATTFLVAIVCYIRATRRQSEVS 120
           VSTANDGGTGNEIELENHEHHKSIDKSVAGGGVILGGLATTFLVAIVCYIRATRRQSEVS
Sbjct: 83  VSTANDGGTGNEIELENHEHHKSIDKSVAGGGVILGGLATTFLVAIVCYIRATRRQSEVS 142

BLAST of Cp4.1LG10g08230 vs. NCBI nr
Match: KGN54308.1 (hypothetical protein Csa_017945 [Cucumis sativus])

HSP 1 Score: 165 bits (417), Expect = 5.76e-50
Identity = 86/121 (71.07%), Postives = 98/121 (80.99%), Query Frame = 0

Query: 1   MPPFLFLLFIFANALLGSVAVGAAPSPTAAEPPSGRKLGKHHSTAVVFSSPSEAPRREKK 60
           +PPFLFLLFIFANAL  S+A  AAP PT+AE PS RKLGKH STA+ FSSP+EAPR   K
Sbjct: 2   LPPFLFLLFIFANALFSSLAAAAAPPPTSAESPSVRKLGKHQSTAIAFSSPTEAPRSVMK 61

Query: 61  V---STANDGGTGNEIELENHEHHKSIDKSVAGGGVILGGLATTFLVAIVCYIRATRRQS 118
           V   S A+ G +GN +EL NH+HHKS DKS+AGGGVILGGLATTFLVA++CYIRATRRQ 
Sbjct: 62  VQGTSGASGGESGNAVELGNHDHHKSRDKSIAGGGVILGGLATTFLVAVICYIRATRRQK 121

BLAST of Cp4.1LG10g08230 vs. NCBI nr
Match: XP_008448528.1 (PREDICTED: uncharacterized protein LOC103490675 [Cucumis melo] >KAA0045126.1 uncharacterized protein E6C27_scaffold30G001250 [Cucumis melo var. makuwa] >TYK23611.1 uncharacterized protein E5676_scaffold500G001230 [Cucumis melo var. makuwa])

HSP 1 Score: 164 bits (415), Expect = 1.24e-49
Identity = 86/120 (71.67%), Postives = 96/120 (80.00%), Query Frame = 0

Query: 2   PPFLFLLFIFANALLGSVAVGAAPSPTAAEPPSGRKLGKHHSTAVVFSSPSEAPRREKKV 61
           PPFLFLLFIFANA   S+A  AAP PT+AE PS RKLGKH STA+ FSSP EAPR E KV
Sbjct: 5   PPFLFLLFIFANAFFSSLAAAAAPPPTSAESPSLRKLGKHQSTAIAFSSPIEAPRSEMKV 64

Query: 62  ---STANDGGTGNEIELENHEHHKSIDKSVAGGGVILGGLATTFLVAIVCYIRATRRQSE 118
              S A+ G +GN ++L NH+HHKS DKS+AGGGVILGGLATTFLVAI+CYIRATRRQ  
Sbjct: 65  QGTSAASGGESGNAVQLGNHDHHKSRDKSIAGGGVILGGLATTFLVAIICYIRATRRQKS 124

BLAST of Cp4.1LG10g08230 vs. NCBI nr
Match: KAG6595353.1 (hypothetical protein SDJN03_11906, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027361.1 hypothetical protein SDJN02_11373, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 128 bits (322), Expect = 7.75e-36
Identity = 76/118 (64.41%), Postives = 82/118 (69.49%), Query Frame = 0

Query: 1   MPPFLFLLFIFANALLGSVAVGAAPSPTAAEPPSGRKLGKHHSTAVVFSSPSEAPRREKK 60
           M PFLFLLFIFA+ALL S AV       AAEPPS RKLG H S A V SSPSEAP+ E K
Sbjct: 1   MAPFLFLLFIFASALLDSAAV-------AAEPPSARKLGNHWSAAAVSSSPSEAPQSEIK 60

Query: 61  VSTANDGGTGNEIELENHEHHKSIDKSVAGGGVILGGLATTFLVAIVCYIRATRRQSE 118
           V             LEN EHHKS D S+AGGGVILGGLATTF VAI+CYIRAT+RQ+ 
Sbjct: 61  V-------------LENREHHKSRDMSIAGGGVILGGLATTFFVAIICYIRATKRQNS 98

BLAST of Cp4.1LG10g08230 vs. NCBI nr
Match: XP_022151558.1 (uncharacterized protein LOC111019472 [Momordica charantia])

HSP 1 Score: 127 bits (320), Expect = 3.51e-35
Identity = 79/127 (62.20%), Postives = 86/127 (67.72%), Query Frame = 0

Query: 1   MPPFLFLLFIFANALLGSVAV-----GAAPSP--TAAEPPSGRKLGKHHSTAVVFS--SP 60
           M  FLF+LFIFANA L SV V     GAAPSP  T AE PS RKLGKH S A V S  SP
Sbjct: 1   MARFLFILFIFANAFLNSVVVVGAEFGAAPSPISTGAETPSARKLGKHRSAAAVSSGSSP 60

Query: 61  SEAPRREKKVSTANDGGTGNEIELENHEHHKSIDKSVAGGGVILGGLATTFLVAIVCYIR 118
           SEAPR E KV   +   T        H +HK+ DKS+AGGGVILGGLATTFLVAI+CYIR
Sbjct: 61  SEAPRSEMKVQATSAAATNGGDHQ--HHNHKASDKSIAGGGVILGGLATTFLVAIICYIR 120

BLAST of Cp4.1LG10g08230 vs. ExPASy TrEMBL
Match: A0A0A0KXQ0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G303070 PE=4 SV=1)

HSP 1 Score: 165 bits (417), Expect = 2.79e-50
Identity = 86/121 (71.07%), Postives = 98/121 (80.99%), Query Frame = 0

Query: 1   MPPFLFLLFIFANALLGSVAVGAAPSPTAAEPPSGRKLGKHHSTAVVFSSPSEAPRREKK 60
           +PPFLFLLFIFANAL  S+A  AAP PT+AE PS RKLGKH STA+ FSSP+EAPR   K
Sbjct: 2   LPPFLFLLFIFANALFSSLAAAAAPPPTSAESPSVRKLGKHQSTAIAFSSPTEAPRSVMK 61

Query: 61  V---STANDGGTGNEIELENHEHHKSIDKSVAGGGVILGGLATTFLVAIVCYIRATRRQS 118
           V   S A+ G +GN +EL NH+HHKS DKS+AGGGVILGGLATTFLVA++CYIRATRRQ 
Sbjct: 62  VQGTSGASGGESGNAVELGNHDHHKSRDKSIAGGGVILGGLATTFLVAVICYIRATRRQK 121

BLAST of Cp4.1LG10g08230 vs. ExPASy TrEMBL
Match: A0A5A7TSM2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold500G001230 PE=4 SV=1)

HSP 1 Score: 164 bits (415), Expect = 5.99e-50
Identity = 86/120 (71.67%), Postives = 96/120 (80.00%), Query Frame = 0

Query: 2   PPFLFLLFIFANALLGSVAVGAAPSPTAAEPPSGRKLGKHHSTAVVFSSPSEAPRREKKV 61
           PPFLFLLFIFANA   S+A  AAP PT+AE PS RKLGKH STA+ FSSP EAPR E KV
Sbjct: 5   PPFLFLLFIFANAFFSSLAAAAAPPPTSAESPSLRKLGKHQSTAIAFSSPIEAPRSEMKV 64

Query: 62  ---STANDGGTGNEIELENHEHHKSIDKSVAGGGVILGGLATTFLVAIVCYIRATRRQSE 118
              S A+ G +GN ++L NH+HHKS DKS+AGGGVILGGLATTFLVAI+CYIRATRRQ  
Sbjct: 65  QGTSAASGGESGNAVQLGNHDHHKSRDKSIAGGGVILGGLATTFLVAIICYIRATRRQKS 124

BLAST of Cp4.1LG10g08230 vs. ExPASy TrEMBL
Match: A0A1S3BJV8 (uncharacterized protein LOC103490675 OS=Cucumis melo OX=3656 GN=LOC103490675 PE=4 SV=1)

HSP 1 Score: 164 bits (415), Expect = 5.99e-50
Identity = 86/120 (71.67%), Postives = 96/120 (80.00%), Query Frame = 0

Query: 2   PPFLFLLFIFANALLGSVAVGAAPSPTAAEPPSGRKLGKHHSTAVVFSSPSEAPRREKKV 61
           PPFLFLLFIFANA   S+A  AAP PT+AE PS RKLGKH STA+ FSSP EAPR E KV
Sbjct: 5   PPFLFLLFIFANAFFSSLAAAAAPPPTSAESPSLRKLGKHQSTAIAFSSPIEAPRSEMKV 64

Query: 62  ---STANDGGTGNEIELENHEHHKSIDKSVAGGGVILGGLATTFLVAIVCYIRATRRQSE 118
              S A+ G +GN ++L NH+HHKS DKS+AGGGVILGGLATTFLVAI+CYIRATRRQ  
Sbjct: 65  QGTSAASGGESGNAVQLGNHDHHKSRDKSIAGGGVILGGLATTFLVAIICYIRATRRQKS 124

BLAST of Cp4.1LG10g08230 vs. ExPASy TrEMBL
Match: A0A6J1DCH7 (uncharacterized protein LOC111019472 OS=Momordica charantia OX=3673 GN=LOC111019472 PE=4 SV=1)

HSP 1 Score: 127 bits (320), Expect = 1.70e-35
Identity = 79/127 (62.20%), Postives = 86/127 (67.72%), Query Frame = 0

Query: 1   MPPFLFLLFIFANALLGSVAV-----GAAPSP--TAAEPPSGRKLGKHHSTAVVFS--SP 60
           M  FLF+LFIFANA L SV V     GAAPSP  T AE PS RKLGKH S A V S  SP
Sbjct: 1   MARFLFILFIFANAFLNSVVVVGAEFGAAPSPISTGAETPSARKLGKHRSAAAVSSGSSP 60

Query: 61  SEAPRREKKVSTANDGGTGNEIELENHEHHKSIDKSVAGGGVILGGLATTFLVAIVCYIR 118
           SEAPR E KV   +   T        H +HK+ DKS+AGGGVILGGLATTFLVAI+CYIR
Sbjct: 61  SEAPRSEMKVQATSAAATNGGDHQ--HHNHKASDKSIAGGGVILGGLATTFLVAIICYIR 120

BLAST of Cp4.1LG10g08230 vs. ExPASy TrEMBL
Match: A0A1R3H882 (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_21144 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 9.14e-22
Identity = 60/119 (50.42%), Postives = 71/119 (59.66%), Query Frame = 0

Query: 24  APSPTAAE-PPSGRKLGKHHSTAVV-------FSSPSEAPRREKK----------VSTAN 83
           AP+P  AE PPS RKLGKHH+  V         +SPSEAP+ EK+           +  N
Sbjct: 31  APAPYKAEAPPSIRKLGKHHAKVVKNIGGEPPATSPSEAPQAEKENHPKDHFEAIAAEPN 90

Query: 84  DGG----TGNEIELENHEHHKSIDKSVAGGGVILGGLATTFLVAIVCYIRATRRQSEVS 120
           +G      G  + LE H H+ S DKS+AGGGVILGGLATTFLVA+ CYIRAT R    S
Sbjct: 91  NGEHVNVKGQAVHLEKHHHNNSFDKSMAGGGVILGGLATTFLVAVFCYIRATGRHKSSS 149

BLAST of Cp4.1LG10g08230 vs. TAIR 10
Match: AT3G09280.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; Has 31 Blast hits to 31 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 70.9 bits (172), Expect = 8.2e-13
Identity = 42/92 (45.65%), Postives = 53/92 (57.61%), Query Frame = 0

Query: 24  APSPTAAEPPSGRKLGKHHSTAVVFSSPSEAPRREKKVSTANDGGTGNEIELENHEHHKS 83
           A + + AEPP+ RKLG+H          +EAP       T   G            HH +
Sbjct: 19  AAASSEAEPPATRKLGRHEWP----GEEAEAPEVSHLEETVRRG-----------HHHST 78

Query: 84  IDKSVAGGGVILGGLATTFLVAIVCYIRATRR 116
           +++SVAGGGVILGGLATTFLV + CYIRATR+
Sbjct: 79  VERSVAGGGVILGGLATTFLVVVFCYIRATRK 95

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6603622.18.37e-7497.52hypothetical protein SDJN03_04231, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN54308.15.76e-5071.07hypothetical protein Csa_017945 [Cucumis sativus][more]
XP_008448528.11.24e-4971.67PREDICTED: uncharacterized protein LOC103490675 [Cucumis melo] >KAA0045126.1 unc... [more]
KAG6595353.17.75e-3664.41hypothetical protein SDJN03_11906, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022151558.13.51e-3562.20uncharacterized protein LOC111019472 [Momordica charantia][more]
Match NameE-valueIdentityDescription
A0A0A0KXQ02.79e-5071.07Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G303070 PE=4 SV=1[more]
A0A5A7TSM25.99e-5071.67Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3BJV85.99e-5071.67uncharacterized protein LOC103490675 OS=Cucumis melo OX=3656 GN=LOC103490675 PE=... [more]
A0A6J1DCH71.70e-3562.20uncharacterized protein LOC111019472 OS=Momordica charantia OX=3673 GN=LOC111019... [more]
A0A1R3H8829.14e-2250.42Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_21144 PE=4 ... [more]
Match NameE-valueIdentityDescription
AT3G09280.18.2e-1345.65unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 25..80
NoneNo IPR availablePANTHERPTHR34558EXPRESSED PROTEINcoord: 1..117
NoneNo IPR availablePANTHERPTHR34558:SF9F3L24.15 PROTEINcoord: 1..117

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG10g08230.1Cp4.1LG10g08230.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane