Cp4.1LG10g08230 (gene) Cucurbita pepo (MU‐CU‐16) v4.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGCCTCCATTTCTATTCCTTCTCTTCATCTTCGCCAATGCTCTTCTTGGTTCTGTCGCTGTCGGAGCCGCTCCATCACCGACCGCGGCCGAACCACCTTCCGGCAGAAAGCTCGGGAAGCACCACAGTACGGCGGTTGTTTTTTCGAGTCCGTCTGAAGCACCGCGACGTGAAAAGAAAGTCTCGACGGCGAACGACGGTGGTACGGGGAATGAGATTGAATTGGAAAATCATGAGCATCATAAGTCGATAGATAAGTCTGTCGCCGGCGGTGGCGTGATATTGGGCGGACTCGCCACCACGTTTTTGGTGGCGATTGTATGTTACATTAGAGCTACGAGGCGACAGAGTGAAGTTAGCCTCTGA ATGCCTCCATTTCTATTCCTTCTCTTCATCTTCGCCAATGCTCTTCTTGGTTCTGTCGCTGTCGGAGCCGCTCCATCACCGACCGCGGCCGAACCACCTTCCGGCAGAAAGCTCGGGAAGCACCACAGTACGGCGGTTGTTTTTTCGAGTCCGTCTGAAGCACCGCGACGTGAAAAGAAAGTCTCGACGGCGAACGACGGTGGTACGGGGAATGAGATTGAATTGGAAAATCATGAGCATCATAAGTCGATAGATAAGTCTGTCGCCGGCGGTGGCGTGATATTGGGCGGACTCGCCACCACGTTTTTGGTGGCGATTGTATGTTACATTAGAGCTACGAGGCGACAGAGTGAAGTTAGCCTCTGA ATGCCTCCATTTCTATTCCTTCTCTTCATCTTCGCCAATGCTCTTCTTGGTTCTGTCGCTGTCGGAGCCGCTCCATCACCGACCGCGGCCGAACCACCTTCCGGCAGAAAGCTCGGGAAGCACCACAGTACGGCGGTTGTTTTTTCGAGTCCGTCTGAAGCACCGCGACGTGAAAAGAAAGTCTCGACGGCGAACGACGGTGGTACGGGGAATGAGATTGAATTGGAAAATCATGAGCATCATAAGTCGATAGATAAGTCTGTCGCCGGCGGTGGCGTGATATTGGGCGGACTCGCCACCACGTTTTTGGTGGCGATTGTATGTTACATTAGAGCTACGAGGCGACAGAGTGAAGTTAGCCTCTGA MPPFLFLLFIFANALLGSVAVGAAPSPTAAEPPSGRKLGKHHSTAVVFSSPSEAPRREKKVSTANDGGTGNEIELENHEHHKSIDKSVAGGGVILGGLATTFLVAIVCYIRATRRQSEVSL Homology
BLAST of Cp4.1LG10g08230 vs. NCBI nr
Match: KAG6603622.1 (hypothetical protein SDJN03_04231, partial [Cucurbita argyrosperma subsp. sororia] >KAG7033809.1 hypothetical protein SDJN02_03534, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 226 bits (575), Expect = 8.37e-74 Identity = 118/121 (97.52%), Postives = 118/121 (97.52%), Query Frame = 0
BLAST of Cp4.1LG10g08230 vs. NCBI nr
Match: KGN54308.1 (hypothetical protein Csa_017945 [Cucumis sativus]) HSP 1 Score: 165 bits (417), Expect = 5.76e-50 Identity = 86/121 (71.07%), Postives = 98/121 (80.99%), Query Frame = 0
BLAST of Cp4.1LG10g08230 vs. NCBI nr
Match: XP_008448528.1 (PREDICTED: uncharacterized protein LOC103490675 [Cucumis melo] >KAA0045126.1 uncharacterized protein E6C27_scaffold30G001250 [Cucumis melo var. makuwa] >TYK23611.1 uncharacterized protein E5676_scaffold500G001230 [Cucumis melo var. makuwa]) HSP 1 Score: 164 bits (415), Expect = 1.24e-49 Identity = 86/120 (71.67%), Postives = 96/120 (80.00%), Query Frame = 0
BLAST of Cp4.1LG10g08230 vs. NCBI nr
Match: KAG6595353.1 (hypothetical protein SDJN03_11906, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027361.1 hypothetical protein SDJN02_11373, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 128 bits (322), Expect = 7.75e-36 Identity = 76/118 (64.41%), Postives = 82/118 (69.49%), Query Frame = 0
BLAST of Cp4.1LG10g08230 vs. NCBI nr
Match: XP_022151558.1 (uncharacterized protein LOC111019472 [Momordica charantia]) HSP 1 Score: 127 bits (320), Expect = 3.51e-35 Identity = 79/127 (62.20%), Postives = 86/127 (67.72%), Query Frame = 0
BLAST of Cp4.1LG10g08230 vs. ExPASy TrEMBL
Match: A0A0A0KXQ0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G303070 PE=4 SV=1) HSP 1 Score: 165 bits (417), Expect = 2.79e-50 Identity = 86/121 (71.07%), Postives = 98/121 (80.99%), Query Frame = 0
BLAST of Cp4.1LG10g08230 vs. ExPASy TrEMBL
Match: A0A5A7TSM2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold500G001230 PE=4 SV=1) HSP 1 Score: 164 bits (415), Expect = 5.99e-50 Identity = 86/120 (71.67%), Postives = 96/120 (80.00%), Query Frame = 0
BLAST of Cp4.1LG10g08230 vs. ExPASy TrEMBL
Match: A0A1S3BJV8 (uncharacterized protein LOC103490675 OS=Cucumis melo OX=3656 GN=LOC103490675 PE=4 SV=1) HSP 1 Score: 164 bits (415), Expect = 5.99e-50 Identity = 86/120 (71.67%), Postives = 96/120 (80.00%), Query Frame = 0
BLAST of Cp4.1LG10g08230 vs. ExPASy TrEMBL
Match: A0A6J1DCH7 (uncharacterized protein LOC111019472 OS=Momordica charantia OX=3673 GN=LOC111019472 PE=4 SV=1) HSP 1 Score: 127 bits (320), Expect = 1.70e-35 Identity = 79/127 (62.20%), Postives = 86/127 (67.72%), Query Frame = 0
BLAST of Cp4.1LG10g08230 vs. ExPASy TrEMBL
Match: A0A1R3H882 (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_21144 PE=4 SV=1) HSP 1 Score: 94.0 bits (232), Expect = 9.14e-22 Identity = 60/119 (50.42%), Postives = 71/119 (59.66%), Query Frame = 0
BLAST of Cp4.1LG10g08230 vs. TAIR 10
Match: AT3G09280.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; Has 31 Blast hits to 31 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 70.9 bits (172), Expect = 8.2e-13 Identity = 42/92 (45.65%), Postives = 53/92 (57.61%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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