Cp4.1LG10g07660 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG10g07660
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG10: 5596001 .. 5596219 (+)
RNA-Seq ExpressionCp4.1LG10g07660
SyntenyCp4.1LG10g07660
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGTCCTCCAGATTTGGGGATTCCATCACGATATTGATGTGCGTTGCTCTCAGAAAAACCTCGCTAATCTTCCGTCACGTTTCGATCTTAATCACCGATCTCATCGCCGTCGCCGCCTCCGCCATCAGATTCTCCCGCTGGTTTCTCCGCCCAACCGTACAGCTTTCCGAAAGGTACTCTACAATGTCGTTGATGATTATTCGCAACGATCGTTGA

mRNA sequence

ATGTCGTCCTCCAGATTTGGGGATTCCATCACGATATTGATGTGCGTTGCTCTCAGAAAAACCTCGCTAATCTTCCGTCACGTTTCGATCTTAATCACCGATCTCATCGCCGTCGCCGCCTCCGCCATCAGATTCTCCCGCTGGTTTCTCCGCCCAACCGTACAGCTTTCCGAAAGGTACTCTACAATGTCGTTGATGATTATTCGCAACGATCGTTGA

Coding sequence (CDS)

ATGTCGTCCTCCAGATTTGGGGATTCCATCACGATATTGATGTGCGTTGCTCTCAGAAAAACCTCGCTAATCTTCCGTCACGTTTCGATCTTAATCACCGATCTCATCGCCGTCGCCGCCTCCGCCATCAGATTCTCCCGCTGGTTTCTCCGCCCAACCGTACAGCTTTCCGAAAGGTACTCTACAATGTCGTTGATGATTATTCGCAACGATCGTTGA

Protein sequence

MSSSRFGDSITILMCVALRKTSLIFRHVSILITDLIAVAASAIRFSRWFLRPTVQLSERYSTMSLMIIRNDR
Homology
BLAST of Cp4.1LG10g07660 vs. NCBI nr
Match: KAG6603548.1 (hypothetical protein SDJN03_04157, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 135 bits (340), Expect = 8.36e-40
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0

Query: 1  MSSSRFGDSITILMCVALRKTSLIFRHVSILITDLIAVAASAIRFSRWFLRPTVQLSERY 60
          MSSSRFGDSITILMCVALRKTSLIFRHVSILITDLIAVAASAIRFSRWFLRPTVQLSERY
Sbjct: 1  MSSSRFGDSITILMCVALRKTSLIFRHVSILITDLIAVAASAIRFSRWFLRPTVQLSERY 60

Query: 61 STMSLMIIRNDR 72
          STMSLMIIRNDR
Sbjct: 61 STMSLMIIRNDR 72

BLAST of Cp4.1LG10g07660 vs. NCBI nr
Match: KAG6595568.1 (hypothetical protein SDJN03_12121, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 70.1 bits (170), Expect = 7.41e-14
Identity = 41/57 (71.93%), Postives = 47/57 (82.46%), Query Frame = 0

Query: 1  MSSSRFGDSITILMCVALRKTSLIFRHVSILITDLIAVAASAIRFSRWFLRPTVQLS 57
          MSSSRFG++I ILMCVALRK SL+FR VS+ I DLIA+AASAIRFSR  L P V +S
Sbjct: 1  MSSSRFGNTIPILMCVALRKPSLVFRDVSLFIIDLIALAASAIRFSR-SLSPEVSVS 56

BLAST of Cp4.1LG10g07660 vs. NCBI nr
Match: KGN54430.1 (hypothetical protein Csa_012790 [Cucumis sativus])

HSP 1 Score: 64.7 bits (156), Expect = 1.13e-11
Identity = 41/75 (54.67%), Postives = 51/75 (68.00%), Query Frame = 0

Query: 5  RFGDSITILMC-VALRKTSLIFRHVSILITDLIAVAASAIRFSRWFLRPTVQL------S 64
          RFG++I ILM  V LRKT L+FR  S  ITDLIA+A+SAIRF RW  R ++Q+       
Sbjct: 5  RFGNTIPILMMRVPLRKTFLLFRCASTFITDLIALASSAIRFIRWHFRSSLQVISSSADD 64

Query: 65 ERYSTMSLMIIRNDR 72
           RYS +SLMI+R  R
Sbjct: 65 NRYSPVSLMILRPHR 79

BLAST of Cp4.1LG10g07660 vs. NCBI nr
Match: DAD26394.1 (TPA_asm: hypothetical protein HUJ06_027862 [Nelumbo nucifera])

HSP 1 Score: 52.8 bits (125), Expect = 6.47e-07
Identity = 32/68 (47.06%), Postives = 41/68 (60.29%), Query Frame = 0

Query: 5  RFGDSITILMCVALRKTSLIFRHVSILITDLIAVAASAIRFSRWFLRPTVQLSERYSTMS 64
          RF D I+IL+ V LRK+    + +  L+ DLI+V  S IRFS    R +   S RYS MS
Sbjct: 3  RFEDGISILLGVILRKSICRLQDLGYLVMDLISVIVSTIRFSELVFRRSTATSGRYSPMS 62

Query: 65 LMIIRNDR 72
           MI R+DR
Sbjct: 63 SMIARHDR 70

BLAST of Cp4.1LG10g07660 vs. NCBI nr
Match: KAG2691069.1 (hypothetical protein I3760_09G218300 [Carya illinoinensis] >KAG6643519.1 hypothetical protein CIPAW_09G217300 [Carya illinoinensis] >KAG6697850.1 hypothetical protein I3842_09G221200 [Carya illinoinensis] >KAG6697851.1 hypothetical protein I3842_09G221200 [Carya illinoinensis] >KAG7965254.1 hypothetical protein I3843_09G213500 [Carya illinoinensis])

HSP 1 Score: 49.7 bits (117), Expect = 8.17e-06
Identity = 30/67 (44.78%), Postives = 42/67 (62.69%), Query Frame = 0

Query: 8  DSITILMCVALRKTSLIFRHVSILITDLIAVAASAIRFSRW-FLRPT-VQLSERYSTMSL 67
          D++ IL  VALRK+  +F   ++++ D + V  S IRFSR+ F  PT V    RYS MS 
Sbjct: 7  DAVWILTSVALRKSIYMFEEFAVMLIDFLPVLVSTIRFSRFIFSHPTPVSAGRRYSPMSS 66

Query: 68 MIIRNDR 72
          M+ R+DR
Sbjct: 67 MVARHDR 73

BLAST of Cp4.1LG10g07660 vs. ExPASy TrEMBL
Match: A0A0A0KXR7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G326540 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 5.49e-12
Identity = 41/75 (54.67%), Postives = 51/75 (68.00%), Query Frame = 0

Query: 5  RFGDSITILMC-VALRKTSLIFRHVSILITDLIAVAASAIRFSRWFLRPTVQL------S 64
          RFG++I ILM  V LRKT L+FR  S  ITDLIA+A+SAIRF RW  R ++Q+       
Sbjct: 5  RFGNTIPILMMRVPLRKTFLLFRCASTFITDLIALASSAIRFIRWHFRSSLQVISSSADD 64

Query: 65 ERYSTMSLMIIRNDR 72
           RYS +SLMI+R  R
Sbjct: 65 NRYSPVSLMILRPHR 79

BLAST of Cp4.1LG10g07660 vs. ExPASy TrEMBL
Match: A0A7N2M690 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.12e-10
Identity = 30/65 (46.15%), Postives = 45/65 (69.23%), Query Frame = 0

Query: 8  DSITILMCVALRKTSLIFRHVSILITDLIAVAASAIRFSRWFLRPTVQLSERYSTMSLMI 67
          D I++L+ V LRK+  +++  ++L+ D + V  S IRFSR+F RPT  +S RYS MS M+
Sbjct: 7  DVISVLVNVILRKSIYVYKEFAVLMVDFLPVMVSTIRFSRFFFRPTTVVSARYSPMSSMV 66

Query: 68 IRNDR 72
           R+DR
Sbjct: 67 ARHDR 71

BLAST of Cp4.1LG10g07660 vs. ExPASy TrEMBL
Match: M1BFB8 (Uncharacterized protein OS=Solanum tuberosum OX=4113 PE=4 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 1.56e-05
Identity = 27/70 (38.57%), Postives = 44/70 (62.86%), Query Frame = 0

Query: 5  RFGDSITILMCVALRKTSLIFRHVSILITDLIAVAASAIRFSRWFLRP--TVQLSERYST 64
          RFGD+++I+M V LRK+  I+  ++ ++ D++ +  S +RFS  F+ P      S  YS 
Sbjct: 3  RFGDAMSIVMHVMLRKSISIYEELAYVLGDILWILNSVVRFSGMFVLPRSNSMSSRHYSH 62

Query: 65 MSLMIIRNDR 72
          MS M++R DR
Sbjct: 63 MSSMVVRPDR 72

BLAST of Cp4.1LG10g07660 vs. ExPASy TrEMBL
Match: A0A314L987 (Uncharacterized protein OS=Nicotiana attenuata OX=49451 GN=A4A49_21077 PE=4 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 6.30e-05
Identity = 29/70 (41.43%), Postives = 46/70 (65.71%), Query Frame = 0

Query: 5  RFGDSITILMCVALRKTSLIFRHVSILITDLIAVAASAIRFSRWFL-RPTVQLSER-YST 64
          RFGD++T++M V LRK+  I+  ++ ++ DL+ +  S +RFS  F+ R +  +S R YS 
Sbjct: 3  RFGDAMTVVMHVMLRKSMSIYEELAYVLGDLVWILNSMVRFSGMFVHRRSSSVSARHYSP 62

Query: 65 MSLMIIRNDR 72
          MS M +R DR
Sbjct: 63 MSSMRVRPDR 72

BLAST of Cp4.1LG10g07660 vs. ExPASy TrEMBL
Match: A0A2P6R8L3 (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr3g0461331 PE=4 SV=1)

HSP 1 Score: 43.9 bits (102), Expect = 7.70e-04
Identity = 30/73 (41.10%), Postives = 47/73 (64.38%), Query Frame = 0

Query: 4  SRFGDSITILMCVALRKTSLIFRHVSILITDLIAVAASAIRFSRW-FLRPTVQLS---ER 63
          +RF D+I+IL+CV  RK++ ++R  +  ITDL++V +S I+ S + FL  T  +S    R
Sbjct: 2  ARFKDAISILVCVLFRKSTHLYREFAAFITDLVSVVSSTIQVSGFIFLHSTRDVSAGSSR 61

Query: 64 YSTM-SLMIIRND 71
          +S M S M  R+D
Sbjct: 62 HSPMYSSMFARHD 74

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6603548.18.36e-40100.00hypothetical protein SDJN03_04157, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6595568.17.41e-1471.93hypothetical protein SDJN03_12121, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN54430.11.13e-1154.67hypothetical protein Csa_012790 [Cucumis sativus][more]
DAD26394.16.47e-0747.06TPA_asm: hypothetical protein HUJ06_027862 [Nelumbo nucifera][more]
KAG2691069.18.17e-0644.78hypothetical protein I3760_09G218300 [Carya illinoinensis] >KAG6643519.1 hypothe... [more]
Match NameE-valueIdentityDescription
A0A0A0KXR75.49e-1254.67Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G326540 PE=4 SV=1[more]
A0A7N2M6902.12e-1046.15Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1[more]
M1BFB81.56e-0538.57Uncharacterized protein OS=Solanum tuberosum OX=4113 PE=4 SV=1[more]
A0A314L9876.30e-0541.43Uncharacterized protein OS=Nicotiana attenuata OX=49451 GN=A4A49_21077 PE=4 SV=1[more]
A0A2P6R8L37.70e-0441.10Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr3g0461331 PE=4... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG10g07660.1Cp4.1LG10g07660.1mRNA