Cp4.1LG10g07400 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG10g07400
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUbiquitin-conjugating enzyme E2 28
LocationCp4.1LG10: 5787787 .. 5791000 (-)
RNA-Seq ExpressionCp4.1LG10g07400
SyntenyCp4.1LG10g07400
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGGAGGATTTGGGATCGCTATAAATATTTAAAGTCTTCTTTCATTGCTTAGCGATTGGCAAAGTTCTTCGGTCTCTAAAGTTTGTCAAATTCCACAAAAAATCAGAGGGTAAAGAGACCGACGAACAAGCAGCAGCGGTTTCTGGGGGCCGCCATCGATCTGATTCGGAGCTTATTTCCCTTTCCATAGCTCTTTCCCGCCGATCCCGATCTTCATCGCCTTGTCGATCGCAAACCCTTTTGTTTTCTCAAGGTATTTCTCTCATTTCCATCCGATTTTGTTGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTGTTTGCTCTGTTCTTCGCTTGATGGATTCTTTGAATCATCTCGTTTTCTAATCGATTTTATGTGTAGATCATGGCTTCGAAGCGTATCTTGAAGGAACTGAAGGATTTACAGAAGGATCCGCCCACATCTTGCAGCGCTGGTATGGTTCTAAGCCTTGATCTCTTTATTTGATGATCTATATTGACTGTTTTCTTCCGATTTTATTGCTTTTTGTTGTGTTGATGTATCTGGTGATATCAGATATGGTTCTCTTTAGACTTTCCCTTTCATGCTTTCCCTCGAGGTTTTTAGATCGTGTATGCTAGTGAGAGGTTTGGAGGTTTCCACACCCTTATGAAAGGTATTTCGTTCTCCTTCCCGAGCGATGTGGGATCTCACAATCCACCTTTCAGGCCCAGCGTCCTCGCTGATACTCGTTCTTTTCTCTAATCGATGTGAGACCCCACCAAATCCACCCCCTTTGGGGAACAACCTCCTCACTGGCACATCATCCGGTGTTTGGCTCTGATACCGTTTGTAACGGCTCAAGCCCACCGCTAGCAGATATTGTCCTCTTTGGGTTTTTCCTTTCGGACTTCTCCTCAAGGTTTTTAAAAAGCGTTTGCTAGGGAGAGGTTTCCACACCCTTATGAAGAGTGTTTCATTCTCCTCCCCAAACGATATCGGATGTTTAAGTTGATTTCAATGAAGGAATGAATGAATTGGTTTAGATCCTGTCTTGATGTGAACGTGTTTTTTCTTTCCTAGTTTTGAGCTTGGGATGTTTTGTTTTTTTGTTCTTTTTTTGTTTGTCTTTGCTTTTGAGGATAGGTCCTGTAGCTGAAGACATGTTCCATTGGCAAGCAACCATTATGGGACCATCTGATAGTCCTTATTCAGGAGGTGTTTTTCTAGTCAATATTCATTTCCCTCCAGATTATCCTTTCAAGCCTCCAAAGGTGAATGATGTTTGTCTTCTGTTTGTTGCTTTTAATGATCTGTGTAATATGATTATATGTTTCTTGTCTTGTTTTCGAGTAAATAGGATCGCGAGGTTTAATGATTGTGTTTTGTTGTTCAGGTTGCTTTTAGGACCAAAGTGTTTCATCCAAATATCAATAGCAATGGAAGCATTTGTCTCGACATCCTTAAAGAACAGTGGAGCCCCGCGCTTACGATTTCTAAGGTTCGTTTGGCGTTTTCTTGAAATCACCCTTGGCTTTTCGTTTGGTTTCTAAATCTGGATTGAGATTGTGTTGTTTGCATAGACATAGCTGTTTAATGTCGTGTTTGAGATCTATATGCTTCTGCCATTAGTGAAGTTATGTGTATCATCGATGCCTACTCGTCTGAAGTTCCCTATTCGTATGGCTTAAAATTTACGACCTCGGTTGTATGACTCGGATGGACAGCGTATTTCAATTTGTTCTTTTCGTTTTATTGGGTGTCTGTTGTTTGATCACATAAACAATATGAAGATTTCTTTGAGCCATGGTTTCTCCATGCAATTGGGAGGTCTTTTTTTGTTTGTTGGTATGTTGGGTCTCTGAGTCCTACCTATTGCATTGTACTTATGGTCTACACCCTACTAATTCGAGGTAGTCGAGAACCGTTGTTAACTTGTGTTTCTACCCCAATAAGCGTTAAGGAAGTATTGTGTTGTTAACCGCTCAAGCCTATTGTTAGTAGATATTATGCTCTTTAAGTTTTCTTTCTGCGCTCCCCCTCAAGGTTTTAAAACGCGTCTGCGAGGGAGAGACTTTCACATCTTTATAAGGAAGGTTTCGTTCCCCTCTCTTGACCGATGTGAGATCTCACAATCCAACCCCTCGGGGGCCAGCGTCCTCGCTGGCACACCGCCTAGTGTTTGGTTTTGATACCATTTGTAACAGCCCAAGCCTACCGCTAGTAGATATTGTCTTCTGGGCTTCCTCTCAAGGTTTTAAATTGAGTCTACTTGGGAGAGGCTTCCACACCCTTCTAAGAGATGTTTCGTTCCTCTCTTCAACCAATGTGAGATCTCACAATCCATCCCCTTGGGGGGCCCAACGTTCTCGTTGGCACACCGCCCGGTTTCTGACTCTGATACCATTTGTAACAGCCCAGCCCACCGCTAGTAGATATTATCCTCTTTAAGCTTCTCCTCAAGGTTTTAAAATGCGTCTACTAGGGAGAGATTTCCACACCCTTATAAGGAATGCTATCAAAGTGTCGAAGCCCTCGTTCTACCCACAATTCTAATAAAGAACAAGTTAAATAGTTGAGCTTTATACCTTCACTATAACCATTTGATCATTCAACAAAACCCCATTTCAGCAACGAACCCGCACTCATATCAACTTCAAACCAAATTCTAAACATAATGGTGTTCATGAAACAGGTCCTGCTCTCCATATGCTCATTGCTGACCGATCCAAACCCAGACGACCCTCTTGTACCGGAGATTGCACACATGTACAAGACCGACCGAGCCAAGTATGAAGCGAGCGCACGGAGCTGGACTCAGAAGTACGCAATGGGTTGAGACGGTATCGTAGCTTGGTGTCGGTGATGGATGACGCTGGTGGCGGTATCTTCGACCTGCCATCCTTCTGTATTTCGTGGTTTCTCCAGTTATTTGGGCTGTGTAGGTAACTTAAAACCAAAGAAACAAACAAGTCTTGTGGTTTTCTTCTCTTTGCCACTGGAATTTATGAATGAAAGATTCAAGCACTTTGTCAAATTAACTGGATTCAACATTCCTCTTCGTTGGAATTTCATTCAAGCAGTTATTTATCCCTTACAACAATTATTGTCCATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNGTCGTTCTTCGTTCTTGAGTTTGATCTTCATTTGGTCTTTAAAGTTTTTAATTATTACATTTATTATTGTATT

mRNA sequence

TGGAGGATTTGGGATCGCTATAAATATTTAAAGTCTTCTTTCATTGCTTAGCGATTGGCAAAGTTCTTCGGTCTCTAAAGTTTGTCAAATTCCACAAAAAATCAGAGGGTAAAGAGACCGACGAACAAGCAGCAGCGGTTTCTGGGGGCCGCCATCGATCTGATTCGGAGCTTATTTCCCTTTCCATAGCTCTTTCCCGCCGATCCCGATCTTCATCGCCTTGTCGATCGCAAACCCTTTTGTTTTCTCAAGATCATGGCTTCGAAGCGTATCTTGAAGGAACTGAAGGATTTACAGAAGGATCCGCCCACATCTTGCAGCGCTGGTATGGTCCTGTAGCTGAAGACATGTTCCATTGGCAAGCAACCATTATGGGACCATCTGATAGTCCTTATTCAGGAGGTGTTTTTCTAGTCAATATTCATTTCCCTCCAGATTATCCTTTCAAGCCTCCAAAGGTTGCTTTTAGGACCAAAGTGTTTCATCCAAATATCAATAGCAATGGAAGCATTTGTCTCGACATCCTTAAAGAACAGTGGAGCCCCGCGCTTACGATTTCTAAGGTCCTGCTCTCCATATGCTCATTGCTGACCGATCCAAACCCAGACGACCCTCTTGTACCGGAGATTGCACACATGTACAAGACCGACCGAGCCAAGTATGAAGCGAGCGCACGGAGCTGGACTCAGAAGTACGCAATGGGTTGAGACGGTATCGTAGCTTGGTGTCGGTGATGGATGACGCTGGTGGCGGTATCTTCGACCTGCCATCCTTCTGTATTTCGTGGTTTCTCCAGTTATTTGGGCTGTGTAGGTAACTTAAAACCAAAGAAACAAACAAGTCTTGTGGTTTTCTTCTCTTTGCCACTGGAATTTATGAATGAAAGATTCAAGCACTTTGTCAAATTAACTGGATTCAACATTCCTCTTCGTTGGAATTTCATTCAAGCAGTTATTTATCCCTTACAACAATTATTGTCCATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNGTCGTTCTTCGTTCTTGAGTTTGATCTTCATTTGGTCTTTAAAGTTTTTAATTATTACATTTATTATTGTATT

Coding sequence (CDS)

ATGTTCCATTGGCAAGCAACCATTATGGGACCATCTGATAGTCCTTATTCAGGAGGTGTTTTTCTAGTCAATATTCATTTCCCTCCAGATTATCCTTTCAAGCCTCCAAAGGTTGCTTTTAGGACCAAAGTGTTTCATCCAAATATCAATAGCAATGGAAGCATTTGTCTCGACATCCTTAAAGAACAGTGGAGCCCCGCGCTTACGATTTCTAAGGTCCTGCTCTCCATATGCTCATTGCTGACCGATCCAAACCCAGACGACCCTCTTGTACCGGAGATTGCACACATGTACAAGACCGACCGAGCCAAGTATGAAGCGAGCGCACGGAGCTGGACTCAGAAGTACGCAATGGGTTGA

Protein sequence

MFHWQATIMGPSDSPYSGGVFLVNIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEASARSWTQKYAMG
Homology
[Close]
BLAST of Cp4.1LG10g07400 vs. ExPASy Swiss-Prot
Match: Q94F47 (Ubiquitin-conjugating enzyme E2 28 OS=Arabidopsis thaliana OX=3702 GN=UBC28 PE=1 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 8.0e-66
Identity = 115/119 (96.64%), Postives = 118/119 (99.16%), Query Frame = 0 

Query: 1   MFHWQATIMGPSDSPYSGGVFLVNIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL 60
           MFHWQATIMGPSDSPYSGGVFLV IHFPPDYPFKPPKVAFRTKVFHPN+NSNGSICLDIL
Sbjct: 30  MFHWQATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNVNSNGSICLDIL 89

Query: 61  KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEASARSWTQKYAMG 120
           KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYE++ARSWTQKYAMG
Sbjct: 90  KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYESTARSWTQKYAMG 148

[Close]
BLAST of Cp4.1LG10g07400 vs. ExPASy Swiss-Prot
Match: P35135 (Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum lycopersicum OX=4081 PE=2 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 3.0e-65
Identity = 114/119 (95.80%), Postives = 118/119 (99.16%), Query Frame = 0 

Query: 1   MFHWQATIMGPSDSPYSGGVFLVNIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL 60
           MFHWQATIMGP+DSPY+GGVFLV+IHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL
Sbjct: 30  MFHWQATIMGPTDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL 89

Query: 61  KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEASARSWTQKYAMG 120
           KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYE +ARSWTQKYAMG
Sbjct: 90  KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAMG 148

[Close]
BLAST of Cp4.1LG10g07400 vs. ExPASy Swiss-Prot
Match: P35131 (Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis thaliana OX=3702 GN=UBC8 PE=1 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 4.0e-65
Identity = 114/119 (95.80%), Postives = 118/119 (99.16%), Query Frame = 0 

Query: 1   MFHWQATIMGPSDSPYSGGVFLVNIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL 60
           MFHWQATIMGP++SPYSGGVFLV IHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL
Sbjct: 30  MFHWQATIMGPAESPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL 89

Query: 61  KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEASARSWTQKYAMG 120
           KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEA+AR+WTQKYAMG
Sbjct: 90  KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEATARNWTQKYAMG 148

[Close]
BLAST of Cp4.1LG10g07400 vs. ExPASy Swiss-Prot
Match: P35132 (SUMO-conjugating enzyme UBC9 OS=Arabidopsis thaliana OX=3702 GN=UBC9 PE=1 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 1.5e-64
Identity = 113/119 (94.96%), Postives = 117/119 (98.32%), Query Frame = 0 

Query: 1   MFHWQATIMGPSDSPYSGGVFLVNIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL 60
           MFHWQATIMGPSDSPYSGGVFLV IHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL
Sbjct: 30  MFHWQATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL 89

Query: 61  KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEASARSWTQKYAMG 120
           KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTD+ KYE++AR+WTQKYAMG
Sbjct: 90  KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKNKYESTARTWTQKYAMG 148

[Close]
BLAST of Cp4.1LG10g07400 vs. ExPASy Swiss-Prot
Match: Q8S919 (Ubiquitin-conjugating enzyme E2 5B OS=Oryza sativa subsp. japonica OX=39947 GN=UBC5B PE=2 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 2.6e-64
Identity = 112/119 (94.12%), Postives = 117/119 (98.32%), Query Frame = 0 

Query: 1   MFHWQATIMGPSDSPYSGGVFLVNIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL 60
           MFHWQAT+MGPSDSPY+GGVFLV IHFPPDYPFKPPKVA +TKVFHPNINSNGSICLDIL
Sbjct: 30  MFHWQATLMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVALKTKVFHPNINSNGSICLDIL 89

Query: 61  KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEASARSWTQKYAMG 120
           KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYE++ARSWTQKYAMG
Sbjct: 90  KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYESTARSWTQKYAMG 148

[Close]
BLAST of Cp4.1LG10g07400 vs. NCBI nr
Match: XP_004142676.1 (ubiquitin-conjugating enzyme E2 28 [Cucumis sativus] >XP_008463276.1 PREDICTED: ubiquitin-conjugating enzyme E2 28 [Cucumis melo] >XP_022144084.1 ubiquitin-conjugating enzyme E2 28-like [Momordica charantia] >XP_022924950.1 ubiquitin-conjugating enzyme E2 28-like [Cucurbita moschata] >XP_022950142.1 ubiquitin-conjugating enzyme E2 28-like [Cucurbita moschata] >XP_022966476.1 ubiquitin-conjugating enzyme E2 28-like [Cucurbita maxima] >XP_022978308.1 ubiquitin-conjugating enzyme E2 28-like [Cucurbita maxima] >XP_023517728.1 ubiquitin-conjugating enzyme E2 28-like [Cucurbita pepo subsp. pepo] >XP_023517729.1 ubiquitin-conjugating enzyme E2 28-like [Cucurbita pepo subsp. pepo] >XP_023543247.1 ubiquitin-conjugating enzyme E2 28-like [Cucurbita pepo subsp. pepo] >XP_038882512.1 ubiquitin-conjugating enzyme E2 28-like [Benincasa hispida] >KAG6595637.1 Ubiquitin-conjugating enzyme E2 28, partial [Cucurbita argyrosperma subsp. sororia] >KGN54461.1 hypothetical protein Csa_012070 [Cucumis sativus])

HSP 1 Score: 256 bits (653), Expect = 1.16e-85
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0 

Query: 1   MFHWQATIMGPSDSPYSGGVFLVNIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL 60
           MFHWQATIMGPSDSPYSGGVFLVNIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL
Sbjct: 30  MFHWQATIMGPSDSPYSGGVFLVNIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL 89

Query: 61  KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEASARSWTQKYAMG 119
           KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEASARSWTQKYAMG
Sbjct: 90  KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEASARSWTQKYAMG 148

[Close]
BLAST of Cp4.1LG10g07400 vs. NCBI nr
Match: KAG7033710.1 (Ubiquitin-conjugating enzyme E2 28 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 256 bits (653), Expect = 3.00e-85
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0 

Query: 1   MFHWQATIMGPSDSPYSGGVFLVNIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL 60
           MFHWQATIMGPSDSPYSGGVFLVNIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL
Sbjct: 58  MFHWQATIMGPSDSPYSGGVFLVNIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL 117

Query: 61  KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEASARSWTQKYAMG 119
           KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEASARSWTQKYAMG
Sbjct: 118 KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEASARSWTQKYAMG 176

[Close]
BLAST of Cp4.1LG10g07400 vs. NCBI nr
Match: TYK09753.1 (ubiquitin-conjugating enzyme E2-17 kDa [Cucumis melo var. makuwa])

HSP 1 Score: 256 bits (653), Expect = 4.49e-85
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0 

Query: 1   MFHWQATIMGPSDSPYSGGVFLVNIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL 60
           MFHWQATIMGPSDSPYSGGVFLVNIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL
Sbjct: 70  MFHWQATIMGPSDSPYSGGVFLVNIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL 129

Query: 61  KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEASARSWTQKYAMG 119
           KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEASARSWTQKYAMG
Sbjct: 130 KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEASARSWTQKYAMG 188

[Close]
BLAST of Cp4.1LG10g07400 vs. NCBI nr
Match: MBA0801269.1 (hypothetical protein [Gossypium harknessii])

HSP 1 Score: 253 bits (646), Expect = 5.14e-85
Identity = 117/119 (98.32%), Postives = 119/119 (100.00%), Query Frame = 0 

Query: 1   MFHWQATIMGPSDSPYSGGVFLVNIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL 60
           MFHWQATIMGPSDSP++GGVFLVNIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL
Sbjct: 1   MFHWQATIMGPSDSPFAGGVFLVNIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL 60

Query: 61  KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEASARSWTQKYAMG 119
           KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEASARSWTQKYAMG
Sbjct: 61  KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEASARSWTQKYAMG 119

[Close]
BLAST of Cp4.1LG10g07400 vs. NCBI nr
Match: MBA0558972.1 (hypothetical protein [Gossypium lobatum] >MBA0588591.1 hypothetical protein [Gossypium raimondii] >MBA0830788.1 hypothetical protein [Gossypium armourianum])

HSP 1 Score: 252 bits (643), Expect = 1.47e-84
Identity = 116/119 (97.48%), Postives = 119/119 (100.00%), Query Frame = 0 

Query: 1   MFHWQATIMGPSDSPYSGGVFLVNIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL 60
           MFHWQATIMGPSDSP++GGVFLVNIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL
Sbjct: 1   MFHWQATIMGPSDSPFAGGVFLVNIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL 60

Query: 61  KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEASARSWTQKYAMG 119
           KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEA+ARSWTQKYAMG
Sbjct: 61  KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEATARSWTQKYAMG 119

[Close]
BLAST of Cp4.1LG10g07400 vs. ExPASy TrEMBL
Match: A0A6J1ISN6 (ubiquitin-conjugating enzyme E2 28-like OS=Cucurbita maxima OX=3661 GN=LOC111478335 PE=3 SV=1)

HSP 1 Score: 256 bits (653), Expect = 5.63e-86
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0 

Query: 1   MFHWQATIMGPSDSPYSGGVFLVNIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL 60
           MFHWQATIMGPSDSPYSGGVFLVNIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL
Sbjct: 30  MFHWQATIMGPSDSPYSGGVFLVNIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL 89

Query: 61  KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEASARSWTQKYAMG 119
           KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEASARSWTQKYAMG
Sbjct: 90  KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEASARSWTQKYAMG 148

[Close]
BLAST of Cp4.1LG10g07400 vs. ExPASy TrEMBL
Match: A0A6J1EGH9 (ubiquitin-conjugating enzyme E2 28-like OS=Cucurbita moschata OX=3662 GN=LOC111432341 PE=3 SV=1)

HSP 1 Score: 256 bits (653), Expect = 5.63e-86
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0 

Query: 1   MFHWQATIMGPSDSPYSGGVFLVNIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL 60
           MFHWQATIMGPSDSPYSGGVFLVNIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL
Sbjct: 30  MFHWQATIMGPSDSPYSGGVFLVNIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL 89

Query: 61  KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEASARSWTQKYAMG 119
           KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEASARSWTQKYAMG
Sbjct: 90  KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEASARSWTQKYAMG 148

[Close]
BLAST of Cp4.1LG10g07400 vs. ExPASy TrEMBL
Match: A0A0A0L2X5 (UBC core domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G334720 PE=3 SV=1)

HSP 1 Score: 256 bits (653), Expect = 5.63e-86
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0 

Query: 1   MFHWQATIMGPSDSPYSGGVFLVNIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL 60
           MFHWQATIMGPSDSPYSGGVFLVNIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL
Sbjct: 30  MFHWQATIMGPSDSPYSGGVFLVNIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL 89

Query: 61  KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEASARSWTQKYAMG 119
           KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEASARSWTQKYAMG
Sbjct: 90  KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEASARSWTQKYAMG 148

[Close]
BLAST of Cp4.1LG10g07400 vs. ExPASy TrEMBL
Match: A0A6J1CR94 (ubiquitin-conjugating enzyme E2 28-like OS=Momordica charantia OX=3673 GN=LOC111013862 PE=3 SV=1)

HSP 1 Score: 256 bits (653), Expect = 5.63e-86
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0 

Query: 1   MFHWQATIMGPSDSPYSGGVFLVNIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL 60
           MFHWQATIMGPSDSPYSGGVFLVNIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL
Sbjct: 30  MFHWQATIMGPSDSPYSGGVFLVNIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL 89

Query: 61  KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEASARSWTQKYAMG 119
           KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEASARSWTQKYAMG
Sbjct: 90  KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEASARSWTQKYAMG 148

[Close]
BLAST of Cp4.1LG10g07400 vs. ExPASy TrEMBL
Match: A0A1S3CIW1 (ubiquitin-conjugating enzyme E2 28 OS=Cucumis melo OX=3656 GN=LOC103501476 PE=3 SV=1)

HSP 1 Score: 256 bits (653), Expect = 5.63e-86
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0 

Query: 1   MFHWQATIMGPSDSPYSGGVFLVNIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL 60
           MFHWQATIMGPSDSPYSGGVFLVNIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL
Sbjct: 30  MFHWQATIMGPSDSPYSGGVFLVNIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL 89

Query: 61  KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEASARSWTQKYAMG 119
           KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEASARSWTQKYAMG
Sbjct: 90  KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEASARSWTQKYAMG 148

[Close]
BLAST of Cp4.1LG10g07400 vs. TAIR 10
Match: AT1G64230.1 (ubiquitin-conjugating enzyme 28 )

HSP 1 Score: 250.8 bits (639), Expect = 5.7e-67
Identity = 115/119 (96.64%), Postives = 118/119 (99.16%), Query Frame = 0 

Query: 1   MFHWQATIMGPSDSPYSGGVFLVNIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL 60
           MFHWQATIMGPSDSPYSGGVFLV IHFPPDYPFKPPKVAFRTKVFHPN+NSNGSICLDIL
Sbjct: 30  MFHWQATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNVNSNGSICLDIL 89

Query: 61  KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEASARSWTQKYAMG 120
           KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYE++ARSWTQKYAMG
Sbjct: 90  KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYESTARSWTQKYAMG 148

[Close]
BLAST of Cp4.1LG10g07400 vs. TAIR 10
Match: AT1G64230.2 (ubiquitin-conjugating enzyme 28 )

HSP 1 Score: 250.8 bits (639), Expect = 5.7e-67
Identity = 115/119 (96.64%), Postives = 118/119 (99.16%), Query Frame = 0 

Query: 1   MFHWQATIMGPSDSPYSGGVFLVNIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL 60
           MFHWQATIMGPSDSPYSGGVFLV IHFPPDYPFKPPKVAFRTKVFHPN+NSNGSICLDIL
Sbjct: 30  MFHWQATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNVNSNGSICLDIL 89

Query: 61  KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEASARSWTQKYAMG 120
           KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYE++ARSWTQKYAMG
Sbjct: 90  KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYESTARSWTQKYAMG 148

[Close]
BLAST of Cp4.1LG10g07400 vs. TAIR 10
Match: AT1G64230.3 (ubiquitin-conjugating enzyme 28 )

HSP 1 Score: 250.8 bits (639), Expect = 5.7e-67
Identity = 115/119 (96.64%), Postives = 118/119 (99.16%), Query Frame = 0 

Query: 1   MFHWQATIMGPSDSPYSGGVFLVNIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL 60
           MFHWQATIMGPSDSPYSGGVFLV IHFPPDYPFKPPKVAFRTKVFHPN+NSNGSICLDIL
Sbjct: 39  MFHWQATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNVNSNGSICLDIL 98

Query: 61  KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEASARSWTQKYAMG 120
           KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYE++ARSWTQKYAMG
Sbjct: 99  KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYESTARSWTQKYAMG 157

[Close]
BLAST of Cp4.1LG10g07400 vs. TAIR 10
Match: AT1G64230.4 (ubiquitin-conjugating enzyme 28 )

HSP 1 Score: 250.8 bits (639), Expect = 5.7e-67
Identity = 115/119 (96.64%), Postives = 118/119 (99.16%), Query Frame = 0 

Query: 1   MFHWQATIMGPSDSPYSGGVFLVNIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL 60
           MFHWQATIMGPSDSPYSGGVFLV IHFPPDYPFKPPKVAFRTKVFHPN+NSNGSICLDIL
Sbjct: 72  MFHWQATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNVNSNGSICLDIL 131

Query: 61  KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEASARSWTQKYAMG 120
           KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYE++ARSWTQKYAMG
Sbjct: 132 KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYESTARSWTQKYAMG 190

[Close]
BLAST of Cp4.1LG10g07400 vs. TAIR 10
Match: AT1G64230.5 (ubiquitin-conjugating enzyme 28 )

HSP 1 Score: 250.8 bits (639), Expect = 5.7e-67
Identity = 115/119 (96.64%), Postives = 118/119 (99.16%), Query Frame = 0 

Query: 1   MFHWQATIMGPSDSPYSGGVFLVNIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL 60
           MFHWQATIMGPSDSPYSGGVFLV IHFPPDYPFKPPKVAFRTKVFHPN+NSNGSICLDIL
Sbjct: 72  MFHWQATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNVNSNGSICLDIL 131

Query: 61  KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEASARSWTQKYAMG 120
           KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYE++ARSWTQKYAMG
Sbjct: 132 KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYESTARSWTQKYAMG 190

The following BLAST results are available for this feature:
BLAST of Cp4.1LG10g07400 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q94F478.0e-6696.64Ubiquitin-conjugating enzyme E2 28 OS=Arabidopsis thaliana OX=3702 GN=UBC28 PE=1... [more]
P351353.0e-6595.80Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum lycopersicum OX=4081 PE=2 SV=1[more]
P351314.0e-6595.80Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis thaliana OX=3702 GN=UBC8 PE=1 S... [more]
P351321.5e-6494.96SUMO-conjugating enzyme UBC9 OS=Arabidopsis thaliana OX=3702 GN=UBC9 PE=1 SV=1[more]
Q8S9192.6e-6494.12Ubiquitin-conjugating enzyme E2 5B OS=Oryza sativa subsp. japonica OX=39947 GN=U... [more]
BLAST of Cp4.1LG10g07400 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004142676.11.16e-85100.00ubiquitin-conjugating enzyme E2 28 [Cucumis sativus] >XP_008463276.1 PREDICTED: ... [more]
KAG7033710.13.00e-85100.00Ubiquitin-conjugating enzyme E2 28 [Cucurbita argyrosperma subsp. argyrosperma][more]
TYK09753.14.49e-85100.00ubiquitin-conjugating enzyme E2-17 kDa [Cucumis melo var. makuwa][more]
MBA0801269.15.14e-8598.32hypothetical protein [Gossypium harknessii][more]
MBA0558972.11.47e-8497.48hypothetical protein [Gossypium lobatum] >MBA0588591.1 hypothetical protein [Gos... [more]
BLAST of Cp4.1LG10g07400 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1ISN65.63e-86100.00ubiquitin-conjugating enzyme E2 28-like OS=Cucurbita maxima OX=3661 GN=LOC111478... [more]
A0A6J1EGH95.63e-86100.00ubiquitin-conjugating enzyme E2 28-like OS=Cucurbita moschata OX=3662 GN=LOC1114... [more]
A0A0A0L2X55.63e-86100.00UBC core domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G334720 PE... [more]
A0A6J1CR945.63e-86100.00ubiquitin-conjugating enzyme E2 28-like OS=Momordica charantia OX=3673 GN=LOC111... [more]
A0A1S3CIW15.63e-86100.00ubiquitin-conjugating enzyme E2 28 OS=Cucumis melo OX=3656 GN=LOC103501476 PE=3 ... [more]
BLAST of Cp4.1LG10g07400 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G64230.15.7e-6796.64ubiquitin-conjugating enzyme 28 [more]
AT1G64230.25.7e-6796.64ubiquitin-conjugating enzyme 28 [more]
AT1G64230.35.7e-6796.64ubiquitin-conjugating enzyme 28 [more]
AT1G64230.45.7e-6796.64ubiquitin-conjugating enzyme 28 [more]
AT1G64230.55.7e-6796.64ubiquitin-conjugating enzyme 28 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSMARTSM00212ubc_7coord: 1..118
e-value: 3.1E-54
score: 196.2
NoneNo IPR availablePANTHERPTHR24068UBIQUITIN-CONJUGATING ENZYME E2coord: 1..116
NoneNo IPR availablePANTHERPTHR24068:SF346BNAA01G32320D PROTEINcoord: 1..116
IPR000608Ubiquitin-conjugating enzyme E2PFAMPF00179UQ_concoord: 1..112
e-value: 5.0E-47
score: 159.1
IPR000608Ubiquitin-conjugating enzyme E2PROSITEPS50127UBC_2coord: 1..118
score: 50.539623
IPR000608Ubiquitin-conjugating enzyme E2CDDcd00195UBCccoord: 1..113
e-value: 1.61403E-60
score: 180.091
IPR016135Ubiquitin-conjugating enzyme/RWD-likeGENE3D3.10.110.10Ubiquitin Conjugating Enzymecoord: 1..119
e-value: 1.9E-63
score: 214.9
IPR016135Ubiquitin-conjugating enzyme/RWD-likeSUPERFAMILY54495UBC-likecoord: 1..118
IPR023313Ubiquitin-conjugating enzyme, active sitePROSITEPS00183UBC_1coord: 45..60

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG10g07400.1Cp4.1LG10g07400.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000209 protein polyubiquitination
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
cellular_component GO:0005634 nucleus
molecular_function GO:0005524 ATP binding
molecular_function GO:0061631 ubiquitin conjugating enzyme activity