Cp4.1LG10g06990 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG10g06990
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionTransmembrane protein 18
LocationCp4.1LG10: 6150237 .. 6152214 (+)
RNA-Seq ExpressionCp4.1LG10g06990
SyntenyCp4.1LG10g06990
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGAGCTGAGATCTGCAATGGAAGAACATATGGATCAAATGGCGGATCTGGTTCAGAAACTTTCCTCCGAACTCCGATCTGGTCTTCGTCCAGCTGTTGATAATTTTATCGGTTTCTTCCACGCTATTGACTGGAAGGTAAAATTCAATCGAAATCGAGAACTCTCATCGGATCTGGTGTGTGAATTTTTATATTATTTTTATGTATTTTTTTGTTTAATTTTGCAGGAACCTTGGTTGATCGGATTATTAGGTTTTCATGGATTGTTGCTGATAATTACCATCTTTACCAGGAAGCACACGAACTTTCAGATGTTCTTGTTTCTTCTTGCACGTATGATTATTGCTTTTATTTCTCGTTATTCATTTATATTTTTCTGAAATGTATTAGCATTGTTCATGGATGTGCAATGTTGAGATGTTTGATTGCTGTTCATATTGCATCCTCTGTACTGTCAAAATAGTGAGTTCTAGTCTAGGAATTTAGGTTTGAAAACTTCACGAGCTTAGAGATGAATTCTGAGGTTCAAATATCCTTTTGCAAATGATTTGCTGCATCAAGGCTGCAATTATAGATAATTACATTTGCAGATTGGAATTAAAGTCGGTGATCGATGTTTATGATTTCCAACCATAAAGCTTTTTTGATGCTTGTATACATGAATGTGGATACAATCCATATTCACATTTTGCATGTTGATGTGTACGTATTCATGTATTTCTTAATTGCTGGTCCTTTCATTCTTGGAGAATACCCTTTTTGCATTTGTAACGGCTCAAGCCCACCACTGGCAAATATTATCCTCTTTGGGTTTTGCCTTTCGGGAATGCGTATGCTAGGGAGAGATTTCCACATCCTTATAAAAAATGCTTCATTCTCCTCCCAACCAATATGGAATCTCACAATCCACCCCCCCTTCGGGGCCCAACGTCCTCGCTACTACTCGTTCCCTCCTCCAATCGATGTGGGACCCCCTAATCCACCCCCCTTCAGGGCCCAACGTCCTTGCCGGTACATCGCCTCGTGTCCACCCCCCTTCGGGGTTTAGCTTCCTCGCTGGCATATCGTTTGGTGTACACCCCCTTTGGAGTTCAACGTCCTTGTTGGCACACCGCCCGATGTTTGGCTTTGATGCCATTTGTAACGGCCCAAACCCATTGCAAGCAGAGATTGTCCTCTTTAGCAAAAAATTGGCATTCCAATCAACAAAAATATTCCTTTTCTTTTTACTGTGAGATCCCACATTGGTTGGGGAGGAGAACGAAACATTATTTATAAGGGTGTGAAAACCTCTCCCTAGCAGACACGTTTTAAAAAACGTTGAGAGGAAGCTCGAAAGGGAAATCCCAAAAATAGTAATATCTGCTAGCGGTGAGTTTAGGCGATTACTGTATTCTACAAAAACCCTTAAAAACCCTTTCATGTTTGTTATACATTTTCCTATGTTCACAATCATATTTTGCAAGTCTATATGCACATTTTTTTTCATGGATTTCTCAACTCCAATTGTTCTTCATTTCAAGTACAAGAAATCCTTATTTGGAGTACTTACATACTTGTATTTGTAATGCAGTAGCTGGTGTATATTTTGCTGAAAGAATCAATAGAATCTTGAGCAAAAACTGGAAGAATTTTGCCACCCAGAACTATTTTGATCCAAATGGAGTTTTCCTTTCAACACTCTGGTCTGGGCCACTGCTCCTAATTTCAATGATAATTCTGGCAAGTACTCGTTATTACTTCTTTTCCTCATGTCCCGGATGAACAACCCCATACTATCCAATTGCCCCATCACATTGAAGGATAATTTCTCTGTCGTTTGTTGTCTAGTTTTCCACGTCAAGAACACTTAACTGAACTCTCATTTCTGTATGGCAGATAAACACACTTTTTACCTTATGCTATCTAGTAGTCAGGTGGAAAAGAGCTGAGCTTCGAAATCGAGCACGACTTTCACAGTCTAAAGAAGACTAA

mRNA sequence

ATGGAGGAGCTGAGATCTGCAATGGAAGAACATATGGATCAAATGGCGGATCTGGTTCAGAAACTTTCCTCCGAACTCCGATCTGGTCTTCGTCCAGCTGTTGATAATTTTATCGGTTTCTTCCACGCTATTGACTGGAAGATAAACACACTTTTTACCTTATGCTATCTAGTAGTCAGGTGGAAAAGAGCTGAGCTTCGAAATCGAGCACGACTTTCACAGTCTAAAGAAGACTAA

Coding sequence (CDS)

ATGGAGGAGCTGAGATCTGCAATGGAAGAACATATGGATCAAATGGCGGATCTGGTTCAGAAACTTTCCTCCGAACTCCGATCTGGTCTTCGTCCAGCTGTTGATAATTTTATCGGTTTCTTCCACGCTATTGACTGGAAGATAAACACACTTTTTACCTTATGCTATCTAGTAGTCAGGTGGAAAAGAGCTGAGCTTCGAAATCGAGCACGACTTTCACAGTCTAAAGAAGACTAA

Protein sequence

MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKINTLFTLCYLVVRWKRAELRNRARLSQSKED
Homology
[Close]
BLAST of Cp4.1LG10g06990 vs. NCBI nr
Match: KAF9661647.1 (hypothetical protein SADUNF_Sadunf19G0090500 [Salix dunnii])

HSP 1 Score: 130 bits (327), Expect = 1.30e-37
Identity = 61/74 (82.43%), Postives = 72/74 (97.30%), Query Frame = 0 

Query: 1  MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKINTLFTLCYLVVR 60
          MEE++SAME H+DQM DLVQKLSSELRSGLRPA+DNFIGFFHAIDWKIN+LF+LCY++VR
Sbjct: 1  MEEVKSAMEAHLDQMTDLVQKLSSELRSGLRPAIDNFIGFFHAIDWKINSLFSLCYMIVR 60

Query: 61 WKRAELRNRARLSQ 74
          WKRAELR+RARL++
Sbjct: 61 WKRAELRHRARLAR 74

[Close]
BLAST of Cp4.1LG10g06990 vs. NCBI nr
Match: KAG7033663.1 (Transmembrane protein 18, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 119 bits (297), Expect = 4.50e-32
Identity = 77/156 (49.36%), Postives = 78/156 (50.00%), Query Frame = 0 

Query: 1   MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWK------------- 60
           MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWK             
Sbjct: 1   MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLMGLLGFHGL 60

Query: 61  ------------------------------------------------------------ 78
                                                                       
Sbjct: 61  LLIITIFTRKHTNFQMFLFLLALAGVYFAERINRILSKNWKNFATQNYFDPNGVFLSTLW 120

[Close]
BLAST of Cp4.1LG10g06990 vs. NCBI nr
Match: XP_023543279.1 (transmembrane protein 18 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 117 bits (293), Expect = 2.22e-31
Identity = 78/163 (47.85%), Postives = 78/163 (47.85%), Query Frame = 0 

Query: 1   MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWK------------- 60
           MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWK             
Sbjct: 1   MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLIGLLGFHGL 60

Query: 61  ------------------------------------------------------------ 78
                                                                       
Sbjct: 61  LLIITIFTRKHTNFQMFLFLLALAGVYFAERINRILSKNWKNFATQNYFDPNGVFLSTLW 120

[Close]
BLAST of Cp4.1LG10g06990 vs. NCBI nr
Match: XP_022949841.1 (transmembrane protein 18 [Cucurbita moschata] >XP_022978303.1 transmembrane protein 18 [Cucurbita maxima] >KAG6603481.1 Transmembrane protein 18, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 116 bits (290), Expect = 6.32e-31
Identity = 77/163 (47.24%), Postives = 78/163 (47.85%), Query Frame = 0 

Query: 1   MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWK------------- 60
           MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWK             
Sbjct: 1   MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLMGLLGFHGL 60

Query: 61  ------------------------------------------------------------ 78
                                                                       
Sbjct: 61  LLIITIFTRKHTNFQMFLFLLALAGVYFAERINRILSKNWKNFATQNYFDPNGVFLSTLW 120

[Close]
BLAST of Cp4.1LG10g06990 vs. NCBI nr
Match: KAG1328043.1 (Transmembrane protein 18 [Cocos nucifera])

HSP 1 Score: 113 bits (283), Expect = 6.33e-31
Identity = 50/78 (64.10%), Postives = 70/78 (89.74%), Query Frame = 0 

Query: 1  MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKINTLFTLCYLVVR 60
          ME+L+ A+  H D +++L +KLS+ELRSG RPAVD+F+GFFHAIDWK+NTLFTLC+L+V+
Sbjct: 1  MEDLKVALNNHADLVSELFEKLSAELRSGFRPAVDDFVGFFHAIDWKVNTLFTLCHLIVK 60

Query: 61 WKRAELRNRARLSQSKED 78
          WK+AELR+RARL++ K++
Sbjct: 61 WKKAELRHRARLARDKQE 78

[Close]
BLAST of Cp4.1LG10g06990 vs. ExPASy TrEMBL
Match: A0A6J1ISM9 (Transmembrane protein 18 OS=Cucurbita maxima OX=3661 GN=LOC111478331 PE=3 SV=1)

HSP 1 Score: 116 bits (290), Expect = 3.06e-31
Identity = 77/163 (47.24%), Postives = 78/163 (47.85%), Query Frame = 0 

Query: 1   MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWK------------- 60
           MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWK             
Sbjct: 1   MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLMGLLGFHGL 60

Query: 61  ------------------------------------------------------------ 78
                                                                       
Sbjct: 61  LLIITIFTRKHTNFQMFLFLLALAGVYFAERINRILSKNWKNFATQNYFDPNGVFLSTLW 120

[Close]
BLAST of Cp4.1LG10g06990 vs. ExPASy TrEMBL
Match: A0A6J1GD63 (Transmembrane protein 18 OS=Cucurbita moschata OX=3662 GN=LOC111453119 PE=3 SV=1)

HSP 1 Score: 116 bits (290), Expect = 3.06e-31
Identity = 77/163 (47.24%), Postives = 78/163 (47.85%), Query Frame = 0 

Query: 1   MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWK------------- 60
           MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWK             
Sbjct: 1   MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLMGLLGFHGL 60

Query: 61  ------------------------------------------------------------ 78
                                                                       
Sbjct: 61  LLIITIFTRKHTNFQMFLFLLALAGVYFAERINRILSKNWKNFATQNYFDPNGVFLSTLW 120

[Close]
BLAST of Cp4.1LG10g06990 vs. ExPASy TrEMBL
Match: A0A5A7VF36 (Transmembrane protein 18 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold602G001270 PE=3 SV=1)

HSP 1 Score: 111 bits (278), Expect = 2.02e-29
Identity = 73/163 (44.79%), Postives = 78/163 (47.85%), Query Frame = 0 

Query: 1   MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWK------------- 60
           M+ELRSAMEEHMDQM+DL+QKLSSELRSGLRPA+DNFIGFFHAIDWK             
Sbjct: 1   MDELRSAMEEHMDQMSDLIQKLSSELRSGLRPALDNFIGFFHAIDWKEPWLMGLLGFHGL 60

Query: 61  ------------------------------------------------------------ 78
                                                                       
Sbjct: 61  LLIITIFTRKRTNFQMFLFLFALAGVYFAEGINKILSKNWKKFATQNYFDPNGVFLSALW 120

[Close]
BLAST of Cp4.1LG10g06990 vs. ExPASy TrEMBL
Match: A0A1S3CHQ8 (Transmembrane protein 18 OS=Cucumis melo OX=3656 GN=LOC103501090 PE=3 SV=1)

HSP 1 Score: 111 bits (278), Expect = 2.02e-29
Identity = 73/163 (44.79%), Postives = 78/163 (47.85%), Query Frame = 0 

Query: 1   MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWK------------- 60
           M+ELRSAMEEHMDQM+DL+QKLSSELRSGLRPA+DNFIGFFHAIDWK             
Sbjct: 1   MDELRSAMEEHMDQMSDLIQKLSSELRSGLRPALDNFIGFFHAIDWKEPWLMGLLGFHGL 60

Query: 61  ------------------------------------------------------------ 78
                                                                       
Sbjct: 61  LLIITIFTRKRTNFQMFLFLFALAGVYFAEGINKILSKNWKKFATQNYFDPNGVFLSALW 120

[Close]
BLAST of Cp4.1LG10g06990 vs. ExPASy TrEMBL
Match: A0A1J7GEM0 (Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_25051 PE=4 SV=1)

HSP 1 Score: 117 bits (294), Expect = 5.63e-29
Identity = 54/78 (69.23%), Postives = 69/78 (88.46%), Query Frame = 0 

Query: 1   MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKINTLFTLCYLVVR 60
           M E++SAMEEH++ M DL+QKLSSELR+ LRPA +NF+GFFHAIDWKINTLF+LCYL+++
Sbjct: 520 MSEMKSAMEEHIELMTDLLQKLSSELRAALRPAYENFMGFFHAIDWKINTLFSLCYLIIK 579

Query: 61  WKRAELRNRARLSQSKED 78
           WK  ELR+RAR + SK+D
Sbjct: 580 WKITELRHRARAASSKQD 597

[Close]
BLAST of Cp4.1LG10g06990 vs. TAIR 10
Match: AT1G34350.1 (unknown protein; Has 192 Blast hits to 192 proteins in 79 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 0; Plants - 60; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink). )

HSP 1 Score: 88.6 bits (218), Expect = 2.4e-18
Identity = 57/163 (34.97%), Postives = 72/163 (44.17%), Query Frame = 0 

Query: 1   MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWK------------- 60
           MEE+RSAME+ +D +ADLV+KLS ELR+G +PA DNF+GFFHAIDWK             
Sbjct: 1   MEEIRSAMEKQVDLVADLVEKLSGELRTGFQPAYDNFLGFFHAIDWKEPWIMGLMAFHAL 60

Query: 61  ------------------------------------------------------------ 79
                                                                       
Sbjct: 61  LLLVTLLSRRHLNFHMFLFLLALAGVYFAENLNRELRKNWKSFSTQNYFDSNGVFLSTLW 120

[Close]
BLAST of Cp4.1LG10g06990 vs. TAIR 10
Match: AT1G34350.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages. )

HSP 1 Score: 79.0 bits (193), Expect = 1.9e-15
Identity = 57/188 (30.32%), Postives = 72/188 (38.30%), Query Frame = 0 

Query: 1   MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWK------------- 60
           MEE+RSAME+ +D +ADLV+KLS ELR+G +PA DNF+GFFHAIDWK             
Sbjct: 1   MEEIRSAMEKQVDLVADLVEKLSGELRTGFQPAYDNFLGFFHAIDWKEPWIMGLMAFHAL 60

Query: 61  ------------------------------------------------------------ 79
                                                                       
Sbjct: 61  LLLVTLLSRRHLNFHMFLFLLACKFPLKLSIYILYKKSLRSNDLTSLVAGVYFAENLNRE 120

The following BLAST results are available for this feature:
BLAST of Cp4.1LG10g06990 vs.
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG10g06990 vs. NCBI nr
Match NameE-valueIdentityDescription
KAF9661647.11.30e-3782.43hypothetical protein SADUNF_Sadunf19G0090500 [Salix dunnii][more]
KAG7033663.14.50e-3249.36Transmembrane protein 18, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_023543279.12.22e-3147.85transmembrane protein 18 [Cucurbita pepo subsp. pepo][more]
XP_022949841.16.32e-3147.24transmembrane protein 18 [Cucurbita moschata] >XP_022978303.1 transmembrane prot... [more]
KAG1328043.16.33e-3164.10Transmembrane protein 18 [Cocos nucifera][more]
BLAST of Cp4.1LG10g06990 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1ISM93.06e-3147.24Transmembrane protein 18 OS=Cucurbita maxima OX=3661 GN=LOC111478331 PE=3 SV=1[more]
A0A6J1GD633.06e-3147.24Transmembrane protein 18 OS=Cucurbita moschata OX=3662 GN=LOC111453119 PE=3 SV=1[more]
A0A5A7VF362.02e-2944.79Transmembrane protein 18 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A1S3CHQ82.02e-2944.79Transmembrane protein 18 OS=Cucumis melo OX=3656 GN=LOC103501090 PE=3 SV=1[more]
A0A1J7GEM05.63e-2969.23Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_25051 PE=4 S... [more]
BLAST of Cp4.1LG10g06990 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G34350.12.4e-1834.97unknown protein; Has 192 Blast hits to 192 proteins in 79 species: Archae - 0; B... [more]
AT1G34350.21.9e-1530.32unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 1..21
NoneNo IPR availablePANTHERPTHR22593:SF2TRANSMEMBRANE PROTEIN 18coord: 48..77
NoneNo IPR availablePANTHERPTHR22593TRANSMEMBRANE PROTEIN 18coord: 48..77
NoneNo IPR availablePANTHERPTHR22593:SF2TRANSMEMBRANE PROTEIN 18coord: 1..47
NoneNo IPR availablePANTHERPTHR22593TRANSMEMBRANE PROTEIN 18coord: 1..47

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG10g06990.1Cp4.1LG10g06990.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009536 plastid