Cp4.1LG10g06240 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG10g06240
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionDEAD-box ATP-dependent RNA helicase 1
LocationCp4.1LG10: 531595 .. 534738 (+)
RNA-Seq ExpressionCp4.1LG10g06240
SyntenyCp4.1LG10g06240
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TTGGATTTCCCTCCATTTTGGGTGCGAGTTCTGCCTAAAACCCTAGCGCTGCGGGGTTTTGTCTCTGAAGCAGTGTTTGTTAGACAATGGCGGAGAAGCAGAGGCGAAGAGCATCGCCGTTCTACCATGGATGCGAAGCCCTGTCGACGTCTCTTTGTTCGAGGAATGCGTCCTTGAGATCCTCCCCTTGCTCGACCCCCCGCCAATTTCATATTTATTGTGAATCATTTGAATGGTTAATGCCTTCCTATCATCGAGCTTTTCTTTTGTTTATGCATCAAATTGATTTCTGTATCTTTCTATTTGATATTCGTCATTTATTGCACTCCGTTGGAAACAAGTGAATCCATGGTGGATATCTCATTGAAGATTTAACAAGCTGCAAAATGTGTTCATATTTAGAAGAGCATTGAGCTGTGATATATCTGTTAATTGTATCACAAGTAATTGAAAGTTTGGTTATGCACCATATGGCTCCAGATTTGCTGAATTGCATGAAATATGCTCACGGCTATTTTCAATCAGGTTAAAGAGGTTCTTACTGCGGTTGCGCCTGCTGTTGGCTTATCTTTAGGTCTGCCTGTTGGTCAATCCTCCATAGCAGATGAAATTCTGAGCTCATCAAGGGACCTAAGCTCAAGGCAGGCATCTGTTACGATCCCGAAGATTTTTTGGTTGAGCTACCGAGTTCTGTGGACATATTGGTGGCAACATCTGGAAGACTGATGGACAATATTAACTTCACACAAAGGAATTGCAAGTTCTACTTCTTGTAACTATGGTTATACTGTTGAAGTATTGTTCACCATTGTTATAATTAATCCTCATAATTTTTTTTTACTGGCATGTTCCTTTTGGTTTACTTCAAAATTATAGTGCTGACTGCATATACTGTTTGGATTCATGCAGTGGTGTTGATGGGGGTTTTAAGGGTCAACCTTACCGAAGGCTTGCAAAGATGGTTCTCTCTGCAACGCCTAACAGGCTCCAGGCAAGCTCGCTCAGCTTGATTTGCATCACGCTCTATTCTTAATCACTGGGAAAAGAAGATATAAACTTCCGGAGTAATTAGAATCATACATGATGGTAAATTGGCCTGTCTCTTAATTAGTGTGCCATCAAATCATATCTTAGGTGTAGAAACCTTTAAACCTCTCCCGGAGTAGAAACCTCTCCCTAGTAGACACGCTTTAAAAATTTGAGGGAAAGTTCAGAAGAGAAAAATCAAAGAAGACAATATCTGCTAGTGATAGATTTTGGGCCGTTACAGTTTGTTTCTGGTTAAAATAAGTTAGAGATGAATAATTGAGCAATATGTCGTGGTTCAACTCGCTTACTCTTAGATTCTTATGTTTCAGGTTAGGCGTTTCAAGAGATCGCTACACGGATTGATAATGATTCTTGCCCAATACATTCCCTGCCTTCCAGTTCAATTGAGTTGCTCCAGCCTACTTATGTCTCTGGTAACACCTCGTCCCTTTTGATGACTGTACGGAAAAACTGCCCTAACTAGCCTAAATAATTTAAAATTTTCGGCTTCATATATATATTTATATATTTAAATAGAGGGATTAGGTTAAACTTTAAAAACCAGTTGTGGTAAATTCCTTTGATCCGTGCATCAAATCGGCTCTGCTCTTTCCTCGTTATCCAAAAGTAAATAAGGTTGCTGGGTTAATTTGTTGGGAAGGATTGTTGTTTTCAGCGAAGCTGTTGCATAAATAAATAAATAAATAATCCTCTATTATTTTTGTTCATATAGATGTTTTCCAAACATTTTTCTTATTTTGATTTGTAATGATTAACAGCCCTAGAGAAACTGAAGGAAAAGGTTGAATCAGAAAGAAAGCACATTCATGTCTTCCGGAGTGCGCAAACGAAAAGATATGAACTCCTCCAAAGAAAAAGGTTGGTGTTGGTACTAACAAACAAGTCCCTCTGAGAGTTTAATGTCCCATTTCGTAACATATGAAAAACTCGTTTAGGCCGTGTAGGGAAAGATTAAATGGCAGGCATGATTTGAATATTTAATCTTGCATGTTCTGTTGACTAATCTGCGTTGAAACTGTTGGATTGAATGACAGTATTCTTATGCATTTTAACATTACAAATTCCTCATTTCAAACTCGACAAACTATACATAAGATTGTATTACAGTCTTTTAGCAAGTTCACTGGAAACTGTGCGAGCACAAATTTCAGGAACTCATCCCACAACGAAATGAAAATTGAACTACCGGATATGGTGATGAAGCCTTTAAGGCCTAATTTTCACTCCAGACAACAAATTATTCAATCATTGAATTTGGAGAAAGATCTATTTATGTTTCTGACGAAGTACACAGAATTGGCACTAACAACCATAGACGCAGGGGTTGTTGATGATGGTAGGCTTCTTGGAGAAGCAGGATACTCATTCTTGCTGCCATCTCTCTCCTCTTCACTGATGGTATCCAACACTTTTGACGTTCGGCGTCTCATGACACTGATAATCTGTGGTGGCGCGACCTCGGTAACGAACCTTGCTATACGGGAATTCGCCATTACTTTTGAAGGATGATGGTTGAGAAAACAGATGCTCTAGGAGGTCAGATTGGTTGGGTTGAGCGTGAATGCAAGCCTTTGGGTGATATTTATGAGAATCTGCGTAGACTAAGAATTGAATGAAAGTCCTGTGCCGAGGGGGGATACTTGAAATCAATATTTTTGGCTATGTTGGTGCTGCTTAGTACACATCTTCTATTGATATTTATTGCAGTTTTCAAATGTCTGATCTCTTTCCCCGACCTTTCTAGGAGATTAACATGTGGTGTTTAGAGGTATATCCCAAAATCTGCTGGGACCAATAGCTTTTGCATTTGCCCTCTTCAAAATTTAACCATGATTGGCAAATCCATATGCCACGTTTCTTAATTTTCTGGTATGTTAATGTTGACAAAATTTTCTATTCAGTTTCTAACATTTGTGTTAATTTTTCTGACAAGTGTCACAGGCTTCAAGGAACAGAATTGCTGTCCTAATTGAACAACAAAATTTATGGAGGTTTGGAAGATCCCAATAGAATATAAAATATCTATATTGAATTATTGGTTGGCCTTTAATTTTGATTTCTTTTTTCCAGAAAAGGAAAACGTGCAGCTTATGA

mRNA sequence

TTGGATTTCCCTCCATTTTGGGTGCGAGTTCTGCCTAAAACCCTAGCGCTGCGGGGTTTTGTCTCTGAAGCAGTGTTTGTTAGACAATGGCGGAGAAGCAGAGGCGAAGAGCATCGCCGTTCTACCATGGATGCGAAGCCCTGTCGACGTCTCTTTGTTAAAGAGGTTCTTACTGCGGTTGCGCCTGCTGTTGGCTTATCTTTAGGTCTGCCTGTTGGTCAATCCTCCATAGCAGATGAAATTCTGAGCTCATCAAGGGACCTAAGCTCAAGGCAGGCATCTGTTACGATCCCGAAGATTTTTTGGTTGAGCTACCGAGTTCTTGGTGTTGATGGGGGTTTTAAGGGTCAACCTTACCGAAGGCTTGCAAAGATGGCGTTTCAAGAGATCGCTACACGGATTGATAATGATTCTTGCCCAATACATTCCCTGCCTTCCAGTTCAATTGAGTTGCTCCAGCCTACTTATGTCTCTGCCCTAGAGAAACTGAAGGAAAAGGTTGAATCAGAAAGAAAGCACATTCATGTCTTCCGGAGTGCGCAAACGAAAAGATATGAACTCCTCCAAAGAAAAAGCAAGTTCACTGGAAACTGTGCGAGCACAAATTTCAGGAACTCATCCCACAACGAAATGAAAATTGAACTACCGGATATGGTGATGAAGCCTTTAAGGCCTAATTTTCACTCCAGACAACAAATTATTCAATCATTGAATTTGGAGAAAGATCTATTTATGTTTCTGACGAAGTACACAGAATTGGCACTAACAACCATAGACGCAGGGGTTGTTGATGATGGTAGGCTTCTTGGAGAAGCAGGATACTCATTCTTGCTGCCATCTCTCTCCTCTTCACTGATGGTATCCAACACTTTTGACGTTCGGCGTCTCATGACACTGATAATCTGTGGTGGCGCGACCTCGAAAAGGAAAACGTGCAGCTTATGA

Coding sequence (CDS)

TTGGATTTCCCTCCATTTTGGGTGCGAGTTCTGCCTAAAACCCTAGCGCTGCGGGGTTTTGTCTCTGAAGCAGTGTTTGTTAGACAATGGCGGAGAAGCAGAGGCGAAGAGCATCGCCGTTCTACCATGGATGCGAAGCCCTGTCGACGTCTCTTTGTTAAAGAGGTTCTTACTGCGGTTGCGCCTGCTGTTGGCTTATCTTTAGGTCTGCCTGTTGGTCAATCCTCCATAGCAGATGAAATTCTGAGCTCATCAAGGGACCTAAGCTCAAGGCAGGCATCTGTTACGATCCCGAAGATTTTTTGGTTGAGCTACCGAGTTCTTGGTGTTGATGGGGGTTTTAAGGGTCAACCTTACCGAAGGCTTGCAAAGATGGCGTTTCAAGAGATCGCTACACGGATTGATAATGATTCTTGCCCAATACATTCCCTGCCTTCCAGTTCAATTGAGTTGCTCCAGCCTACTTATGTCTCTGCCCTAGAGAAACTGAAGGAAAAGGTTGAATCAGAAAGAAAGCACATTCATGTCTTCCGGAGTGCGCAAACGAAAAGATATGAACTCCTCCAAAGAAAAAGCAAGTTCACTGGAAACTGTGCGAGCACAAATTTCAGGAACTCATCCCACAACGAAATGAAAATTGAACTACCGGATATGGTGATGAAGCCTTTAAGGCCTAATTTTCACTCCAGACAACAAATTATTCAATCATTGAATTTGGAGAAAGATCTATTTATGTTTCTGACGAAGTACACAGAATTGGCACTAACAACCATAGACGCAGGGGTTGTTGATGATGGTAGGCTTCTTGGAGAAGCAGGATACTCATTCTTGCTGCCATCTCTCTCCTCTTCACTGATGGTATCCAACACTTTTGACGTTCGGCGTCTCATGACACTGATAATCTGTGGTGGCGCGACCTCGAAAAGGAAAACGTGCAGCTTATGA

Protein sequence

LDFPPFWVRVLPKTLALRGFVSEAVFVRQWRRSRGEEHRRSTMDAKPCRRLFVKEVLTAVAPAVGLSLGLPVGQSSIADEILSSSRDLSSRQASVTIPKIFWLSYRVLGVDGGFKGQPYRRLAKMAFQEIATRIDNDSCPIHSLPSSSIELLQPTYVSALEKLKEKVESERKHIHVFRSAQTKRYELLQRKSKFTGNCASTNFRNSSHNEMKIELPDMVMKPLRPNFHSRQQIIQSLNLEKDLFMFLTKYTELALTTIDAGVVDDGRLLGEAGYSFLLPSLSSSLMVSNTFDVRRLMTLIICGGATSKRKTCSL
Homology
[Close]
BLAST of Cp4.1LG10g06240 vs. ExPASy Swiss-Prot
Match: Q0DWT8 (DEAD-box ATP-dependent RNA helicase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0795900 PE=2 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 8.4e-06
Identity = 23/45 (51.11%), Postives = 33/45 (73.33%), Query Frame = 0 

Query: 126 AFQEIATRIDNDSCPIHSLPSSSIELLQPTYVSALEKLKEKVESE 171
           AF ++  + DN SC +HSLP  S+E L+P + SAL+KL+E +ESE
Sbjct: 454 AFDKMLKKADNSSCSLHSLPEESVETLRPVFSSALKKLEESLESE 498


HSP 2 Score: 43.1 bits (100), Expect = 6.7e-03
Identity = 22/31 (70.97%), Postives = 25/31 (80.65%), Query Frame = 0 

Query: 51  LFVKEVLTAVAPAVGLSLGLPVGQSSIADEI 82
           L VKEV  A+AP VGLS+G  VGQSSIADE+
Sbjct: 124 LQVKEVFDAIAPVVGLSVGSAVGQSSIADEV 154

[Close]
BLAST of Cp4.1LG10g06240 vs. ExPASy Swiss-Prot
Match: Q7FGZ2 (DEAD-box ATP-dependent RNA helicase 1 OS=Arabidopsis thaliana OX=3702 GN=RH1 PE=2 SV=3)

HSP 1 Score: 49.7 bits (117), Expect = 7.1e-05
Identity = 21/44 (47.73%), Postives = 33/44 (75.00%), Query Frame = 0 

Query: 127 FQEIATRIDNDSCPIHSLPSSSIELLQPTYVSALEKLKEKVESE 171
           F ++  ++ +DSCPI+ +P +S++ ++ TY  ALEKLKE VESE
Sbjct: 450 FSKLLEKVGSDSCPIYPIPPTSLDSIRATYTPALEKLKELVESE 493


HSP 2 Score: 41.2 bits (95), Expect = 2.5e-02
Identity = 22/31 (70.97%), Postives = 25/31 (80.65%), Query Frame = 0 

Query: 51  LFVKEVLTAVAPAVGLSLGLPVGQSSIADEI 82
           L VK+V  A+APAVGLS+G  VGQSSIA EI
Sbjct: 118 LQVKDVFDAIAPAVGLSVGSAVGQSSIAGEI 148

[Close]
BLAST of Cp4.1LG10g06240 vs. NCBI nr
Match: KAG6581446.1 (DEAD-box ATP-dependent RNA helicase 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 378 bits (970), Expect = 1.12e-128
Identity = 211/262 (80.53%), Postives = 219/262 (83.59%), Query Frame = 0 

Query: 54  KEVLTAVAPAVGLSLGLPVGQSSIADEILSSSRDLSSRQASVTIPKIFWLSYRVLGVDGG 113
           +EVLTAVAPAVGLS+GLPVGQSSIADEILSSSRDLSSR ASV IP IFWLS  +L    G
Sbjct: 11  EEVLTAVAPAVGLSVGLPVGQSSIADEILSSSRDLSSRPASVMIPNIFWLSVDILVATPG 70

Query: 114 --------FKGQPYRRLAKMAFQEIATRIDNDSCPIHSLPSSSIELLQPTYVSALEKLKE 173
                    K      L  MAFQEIATRIDNDSCPIHSLPSSSI+LLQPTYVS LEKLKE
Sbjct: 71  RLMDNINFTKELQVLLLVAMAFQEIATRIDNDSCPIHSLPSSSIKLLQPTYVSVLEKLKE 130

Query: 174 KVESERKHIHVFRSAQTKRYELLQRKSKFTGNCASTNFRNSSHNEMKIELPDMVMKPLRP 233
           KVESERKHIHVF+SAQTKRYELLQRK            RNSSHN+MKI+L DMVMKP RP
Sbjct: 131 KVESERKHIHVFQSAQTKRYELLQRK------------RNSSHNDMKIQLQDMVMKPQRP 190

Query: 234 NFHSRQQIIQSLNLEKDLFMFLTKYTELALTTIDAGVVDDGRLLGEAGYSFLLPSLSSSL 293
           NFHSRQQIIQSL+LEKDLFMFLTKY ELALTTI AGVVDDGRLLGEAGYSFLLPSLSSSL
Sbjct: 191 NFHSRQQIIQSLSLEKDLFMFLTKYIELALTTIGAGVVDDGRLLGEAGYSFLLPSLSSSL 250

Query: 294 MVSNTFDVRRLMTLIICGGATS 307
           MVSNTFDVRRLMTLIICGGATS
Sbjct: 251 MVSNTFDVRRLMTLIICGGATS 260

[Close]
BLAST of Cp4.1LG10g06240 vs. NCBI nr
Match: KAG6594446.1 (DEAD-box ATP-dependent RNA helicase 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 78.2 bits (191), Expect = 6.33e-12
Identity = 41/62 (66.13%), Postives = 49/62 (79.03%), Query Frame = 0 

Query: 113 GFKGQPYRRLAK---MAFQEIATRIDNDSCPIHSLPSSSIELLQPTYVSALEKLKEKVES 171
           G  G+ +  L+K     F+++  + DNDSCP+HSLPSSSIELLQPTYVSALEKLKEKVES
Sbjct: 431 GQSGRCFTLLSKDEVRRFKKLLQKADNDSCPVHSLPSSSIELLQPTYVSALEKLKEKVES 490

[Close]
BLAST of Cp4.1LG10g06240 vs. NCBI nr
Match: XP_023517664.1 (DEAD-box ATP-dependent RNA helicase 1 [Cucurbita pepo subsp. pepo] >XP_023517665.1 DEAD-box ATP-dependent RNA helicase 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 78.2 bits (191), Expect = 6.33e-12
Identity = 41/62 (66.13%), Postives = 49/62 (79.03%), Query Frame = 0 

Query: 113 GFKGQPYRRLAK---MAFQEIATRIDNDSCPIHSLPSSSIELLQPTYVSALEKLKEKVES 171
           G  G+ +  L+K     F+++  + DNDSCP+HSLPSSSIELLQPTYVSALEKLKEKVES
Sbjct: 431 GQSGRCFTLLSKDEVRRFKKLLQKADNDSCPVHSLPSSSIELLQPTYVSALEKLKEKVES 490

[Close]
BLAST of Cp4.1LG10g06240 vs. NCBI nr
Match: KAG7026449.1 (DEAD-box ATP-dependent RNA helicase 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 78.2 bits (191), Expect = 6.43e-12
Identity = 41/62 (66.13%), Postives = 49/62 (79.03%), Query Frame = 0 

Query: 113 GFKGQPYRRLAK---MAFQEIATRIDNDSCPIHSLPSSSIELLQPTYVSALEKLKEKVES 171
           G  G+ +  L+K     F+++  + DNDSCP+HSLPSSSIELLQPTYVSALEKLKEKVES
Sbjct: 432 GQSGRCFTLLSKDEVRRFKKLLQKADNDSCPVHSLPSSSIELLQPTYVSALEKLKEKVES 491

[Close]
BLAST of Cp4.1LG10g06240 vs. NCBI nr
Match: XP_022926614.1 (DEAD-box ATP-dependent RNA helicase 1 [Cucurbita moschata] >XP_022926615.1 DEAD-box ATP-dependent RNA helicase 1 [Cucurbita moschata])

HSP 1 Score: 77.8 bits (190), Expect = 8.51e-12
Identity = 37/45 (82.22%), Postives = 42/45 (93.33%), Query Frame = 0 

Query: 127 FQEIATRIDNDSCPIHSLPSSSIELLQPTYVSALEKLKEKVESER 171
           F+++  + DNDSCP+HSLPSSSIELLQPTYVSALEKLKEKVESER
Sbjct: 448 FKKLLQKADNDSCPVHSLPSSSIELLQPTYVSALEKLKEKVESER 492

[Close]
BLAST of Cp4.1LG10g06240 vs. ExPASy TrEMBL
Match: A0A6J1EFN8 (DEAD-box ATP-dependent RNA helicase 1 OS=Cucurbita moschata OX=3662 GN=LOC111433692 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 4.12e-12
Identity = 37/45 (82.22%), Postives = 42/45 (93.33%), Query Frame = 0 

Query: 127 FQEIATRIDNDSCPIHSLPSSSIELLQPTYVSALEKLKEKVESER 171
           F+++  + DNDSCP+HSLPSSSIELLQPTYVSALEKLKEKVESER
Sbjct: 448 FKKLLQKADNDSCPVHSLPSSSIELLQPTYVSALEKLKEKVESER 492

[Close]
BLAST of Cp4.1LG10g06240 vs. ExPASy TrEMBL
Match: A0A5D3CPK1 (DEAD-box ATP-dependent RNA helicase 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G009230 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.71e-11
Identity = 42/69 (60.87%), Postives = 50/69 (72.46%), Query Frame = 0 

Query: 127 FQEIATRIDNDSCPIHSLPSSSIELLQPTYVSALEKLKEKVESE--RKHIHVFRSAQTKR 186
           F+++  + DNDSCP+HSLPSSSIE LQPTYVSALEKLKEKVESE  RK    + S   KR
Sbjct: 402 FKKLLQKADNDSCPVHSLPSSSIEFLQPTYVSALEKLKEKVESETSRKSTITYSSRAGKR 461

Query: 187 YELLQRKSK 193
            +    K+K
Sbjct: 462 KDRNSSKAK 470

[Close]
BLAST of Cp4.1LG10g06240 vs. ExPASy TrEMBL
Match: A0A6J1KPB8 (DEAD-box ATP-dependent RNA helicase 1 OS=Cucurbita maxima OX=3661 GN=LOC111497067 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.80e-11
Identity = 41/62 (66.13%), Postives = 48/62 (77.42%), Query Frame = 0 

Query: 113 GFKGQPYRRLAK---MAFQEIATRIDNDSCPIHSLPSSSIELLQPTYVSALEKLKEKVES 171
           G  G+ +  L+K     F+++  + DNDSCP HSLPSSSIELLQPTYVSALEKLKEKVES
Sbjct: 431 GQSGRCFTLLSKDGVRRFKKLLQKADNDSCPEHSLPSSSIELLQPTYVSALEKLKEKVES 490

[Close]
BLAST of Cp4.1LG10g06240 vs. ExPASy TrEMBL
Match: A0A1S3AZ50 (DEAD-box ATP-dependent RNA helicase 1 OS=Cucumis melo OX=3656 GN=LOC103484346 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.81e-11
Identity = 42/69 (60.87%), Postives = 50/69 (72.46%), Query Frame = 0 

Query: 127 FQEIATRIDNDSCPIHSLPSSSIELLQPTYVSALEKLKEKVESE--RKHIHVFRSAQTKR 186
           F+++  + DNDSCP+HSLPSSSIE LQPTYVSALEKLKEKVESE  RK    + S   KR
Sbjct: 448 FKKLLQKADNDSCPVHSLPSSSIEFLQPTYVSALEKLKEKVESETSRKSTITYSSRAGKR 507

Query: 187 YELLQRKSK 193
            +    K+K
Sbjct: 508 KDRNSSKAK 516

[Close]
BLAST of Cp4.1LG10g06240 vs. ExPASy TrEMBL
Match: A0A0A0KNZ7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G524090 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.06e-10
Identity = 34/44 (77.27%), Postives = 40/44 (90.91%), Query Frame = 0 

Query: 127 FQEIATRIDNDSCPIHSLPSSSIELLQPTYVSALEKLKEKVESE 170
           F+++  + DNDSCP+H+LPSSSIE LQPTYVSALEKLKEKVESE
Sbjct: 448 FKKLLQKADNDSCPVHNLPSSSIEFLQPTYVSALEKLKEKVESE 491

[Close]
BLAST of Cp4.1LG10g06240 vs. TAIR 10
Match: AT4G15850.1 (RNA helicase 1 )

HSP 1 Score: 49.7 bits (117), Expect = 5.1e-06
Identity = 21/44 (47.73%), Postives = 33/44 (75.00%), Query Frame = 0 

Query: 127 FQEIATRIDNDSCPIHSLPSSSIELLQPTYVSALEKLKEKVESE 171
           F ++  ++ +DSCPI+ +P +S++ ++ TY  ALEKLKE VESE
Sbjct: 450 FSKLLEKVGSDSCPIYPIPPTSLDSIRATYTPALEKLKELVESE 493


HSP 2 Score: 41.2 bits (95), Expect = 1.8e-03
Identity = 22/31 (70.97%), Postives = 25/31 (80.65%), Query Frame = 0 

Query: 51  LFVKEVLTAVAPAVGLSLGLPVGQSSIADEI 82
           L VK+V  A+APAVGLS+G  VGQSSIA EI
Sbjct: 118 LQVKDVFDAIAPAVGLSVGSAVGQSSIAGEI 148

The following BLAST results are available for this feature:
BLAST of Cp4.1LG10g06240 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q0DWT88.4e-0651.11DEAD-box ATP-dependent RNA helicase 1 OS=Oryza sativa subsp. japonica OX=39947 G... [more]
Q7FGZ27.1e-0547.73DEAD-box ATP-dependent RNA helicase 1 OS=Arabidopsis thaliana OX=3702 GN=RH1 PE=... [more]
BLAST of Cp4.1LG10g06240 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6581446.11.12e-12880.53DEAD-box ATP-dependent RNA helicase 1, partial [Cucurbita argyrosperma subsp. so... [more]
KAG6594446.16.33e-1266.13DEAD-box ATP-dependent RNA helicase 1, partial [Cucurbita argyrosperma subsp. so... [more]
XP_023517664.16.33e-1266.13DEAD-box ATP-dependent RNA helicase 1 [Cucurbita pepo subsp. pepo] >XP_023517665... [more]
KAG7026449.16.43e-1266.13DEAD-box ATP-dependent RNA helicase 1 [Cucurbita argyrosperma subsp. argyrosperm... [more]
XP_022926614.18.51e-1282.22DEAD-box ATP-dependent RNA helicase 1 [Cucurbita moschata] >XP_022926615.1 DEAD-... [more]
BLAST of Cp4.1LG10g06240 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1EFN84.12e-1282.22DEAD-box ATP-dependent RNA helicase 1 OS=Cucurbita moschata OX=3662 GN=LOC111433... [more]
A0A5D3CPK11.71e-1160.87DEAD-box ATP-dependent RNA helicase 1 OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
A0A6J1KPB81.80e-1166.13DEAD-box ATP-dependent RNA helicase 1 OS=Cucurbita maxima OX=3661 GN=LOC11149706... [more]
A0A1S3AZ501.81e-1160.87DEAD-box ATP-dependent RNA helicase 1 OS=Cucumis melo OX=3656 GN=LOC103484346 PE... [more]
A0A0A0KNZ71.06e-1077.27Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G524090 PE=4 SV=1[more]
BLAST of Cp4.1LG10g06240 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G15850.15.1e-0647.73RNA helicase 1 [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG10g06240.1Cp4.1LG10g06240.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005730 nucleolus
molecular_function GO:0005524 ATP binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0003724 RNA helicase activity