Cp4.1LG10g06170 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG10g06170
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	E3 ubiquitin-protein ligase arkadia-A, putative
Location	Cp4.1LG10: 544257 .. 544625 (-)
RNA-Seq Expression	Cp4.1LG10g06170
Synteny	Cp4.1LG10g06170

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGACCCTCATAAGCTTCAGAACCTACCCTCTTTCAAACTCTCCCGCTACTCCTCTACCGTCCGAGACTCCGACGCCGGCGATGACCTCCGCTACACCAGCTTGAAGGACATTCTTCTGAACTCCCCGTCCTACAGCGGCGTTAATGAGTTCAACGAGTTCAATTTGTCGAATATTACGATCCGAAACGAGCTCGTGAAAAGGGCCGCGTCGGCGTACCTTCAATCGGCGGCGATCTTGGTCGGCCGAAATGAGAGCTGTTTCGTGGGATTCTGGGAGAGGCTCAGGATCAAACTCGCCGCCCTCCGCTCCCGTTGGTGTGATTGCTTTCCCCGCTTTTTTGGCTTCTTTAGGTTCGCCTTTTAG

mRNA sequence

ATGGACGACCCTCATAAGCTTCAGAACCTACCCTCTTTCAAACTCTCCCGCTACTCCTCTACCGTCCGAGACTCCGACGCCGGCGATGACCTCCGCTACACCAGCTTGAAGGACATTCTTCTGAACTCCCCGTCCTACAGCGGCGTTAATGAGTTCAACGAGTTCAATTTGTCGAATATTACGATCCGAAACGAGCTCGTGAAAAGGGCCGCGTCGGCGTACCTTCAATCGGCGGCGATCTTGGTCGGCCGAAATGAGAGCTGTTTCGTGGGATTCTGGGAGAGGCTCAGGATCAAACTCGCCGCCCTCCGCTCCCGTTGGTGTGATTGCTTTCCCCGCTTTTTTGGCTTCTTTAGGTTCGCCTTTTAG

Coding sequence (CDS)

ATGGACGACCCTCATAAGCTTCAGAACCTACCCTCTTTCAAACTCTCCCGCTACTCCTCTACCGTCCGAGACTCCGACGCCGGCGATGACCTCCGCTACACCAGCTTGAAGGACATTCTTCTGAACTCCCCGTCCTACAGCGGCGTTAATGAGTTCAACGAGTTCAATTTGTCGAATATTACGATCCGAAACGAGCTCGTGAAAAGGGCCGCGTCGGCGTACCTTCAATCGGCGGCGATCTTGGTCGGCCGAAATGAGAGCTGTTTCGTGGGATTCTGGGAGAGGCTCAGGATCAAACTCGCCGCCCTCCGCTCCCGTTGGTGTGATTGCTTTCCCCGCTTTTTTGGCTTCTTTAGGTTCGCCTTTTAG

Protein sequence

MDDPHKLQNLPSFKLSRYSSTVRDSDAGDDLRYTSLKDILLNSPSYSGVNEFNEFNLSNITIRNELVKRAASAYLQSAAILVGRNESCFVGFWERLRIKLAALRSRWCDCFPRFFGFFRFAF

Homology

[Close]

BLAST of Cp4.1LG10g06170 vs. NCBI nr
Match: XP_022977989.1 (uncharacterized protein LOC111478115 [Cucurbita maxima])

HSP 1 Score: 249 bits (636), Expect = 2.91e-83
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0


Query: 1   MDDPHKLQNLPSFKLSRYSSTVRDSDAGDDLRYTSLKDILLNSPSYSGVNEFNEFNLSNI 60
           MDDPHKLQNLPSFKLSRYSSTVRDSDAGDDLRYTSLKDILLNSPSYSGVNEFNEFNLSNI
Sbjct: 10  MDDPHKLQNLPSFKLSRYSSTVRDSDAGDDLRYTSLKDILLNSPSYSGVNEFNEFNLSNI 69

Query: 61  TIRNELVKRAASAYLQSAAILVGRNESCFVGFWERLRIKLAALRSRWCDCFPRFFGFFRF 120
           TIRNELVKRAASAYLQSAAILVGRNESCFVGFWERLRIKLAALRSRWCDCFPRFFGFFRF
Sbjct: 70  TIRNELVKRAASAYLQSAAILVGRNESCFVGFWERLRIKLAALRSRWCDCFPRFFGFFRF 129

Query: 121 AF 122
           AF
Sbjct: 130 AF 131

[Close]

BLAST of Cp4.1LG10g06170 vs. NCBI nr
Match: KAG7034735.1 (hypothetical protein SDJN02_04465, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 248 bits (632), Expect = 8.80e-83
Identity = 121/122 (99.18%), Postives = 121/122 (99.18%), Query Frame = 0


Query: 1   MDDPHKLQNLPSFKLSRYSSTVRDSDAGDDLRYTSLKDILLNSPSYSGVNEFNEFNLSNI 60
           MDDPHKLQNLPSFKLSRYSSTVRDSDAGDDLRYTSLKDILLNSPSYSGVNEFNEFNLSNI
Sbjct: 1   MDDPHKLQNLPSFKLSRYSSTVRDSDAGDDLRYTSLKDILLNSPSYSGVNEFNEFNLSNI 60

Query: 61  TIRNELVKRAASAYLQSAAILVGRNESCFVGFWERLRIKLAALRSRWCDCFPRFFGFFRF 120
           TIRNELVKRAASAYLQSAAILVGRNESCFVGFWERLRIKLAALRSRWCDCFPRFFGFFRF
Sbjct: 61  TIRNELVKRAASAYLQSAAILVGRNESCFVGFWERLRIKLAALRSRWCDCFPRFFGFFRF 120

Query: 121 AF 122
            F
Sbjct: 121 VF 122

[Close]

BLAST of Cp4.1LG10g06170 vs. NCBI nr
Match: XP_022925985.1 (uncharacterized protein LOC111433238 [Cucurbita moschata] >KAG6581442.1 hypothetical protein SDJN03_21444, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 248 bits (632), Expect = 1.19e-82
Identity = 121/122 (99.18%), Postives = 121/122 (99.18%), Query Frame = 0


Query: 1   MDDPHKLQNLPSFKLSRYSSTVRDSDAGDDLRYTSLKDILLNSPSYSGVNEFNEFNLSNI 60
           MDDPHKLQNLPSFKLSRYSSTVRDSDAGDDLRYTSLKDILLNSPSYSGVNEFNEFNLSNI
Sbjct: 10  MDDPHKLQNLPSFKLSRYSSTVRDSDAGDDLRYTSLKDILLNSPSYSGVNEFNEFNLSNI 69

Query: 61  TIRNELVKRAASAYLQSAAILVGRNESCFVGFWERLRIKLAALRSRWCDCFPRFFGFFRF 120
           TIRNELVKRAASAYLQSAAILVGRNESCFVGFWERLRIKLAALRSRWCDCFPRFFGFFRF
Sbjct: 70  TIRNELVKRAASAYLQSAAILVGRNESCFVGFWERLRIKLAALRSRWCDCFPRFFGFFRF 129

Query: 121 AF 122
            F
Sbjct: 130 VF 131

[Close]

BLAST of Cp4.1LG10g06170 vs. NCBI nr
Match: XP_023544918.1 (uncharacterized protein LOC111804374 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 249 bits (636), Expect = 1.85e-82
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0


Query: 1   MDDPHKLQNLPSFKLSRYSSTVRDSDAGDDLRYTSLKDILLNSPSYSGVNEFNEFNLSNI 60
           MDDPHKLQNLPSFKLSRYSSTVRDSDAGDDLRYTSLKDILLNSPSYSGVNEFNEFNLSNI
Sbjct: 65  MDDPHKLQNLPSFKLSRYSSTVRDSDAGDDLRYTSLKDILLNSPSYSGVNEFNEFNLSNI 124

Query: 61  TIRNELVKRAASAYLQSAAILVGRNESCFVGFWERLRIKLAALRSRWCDCFPRFFGFFRF 120
           TIRNELVKRAASAYLQSAAILVGRNESCFVGFWERLRIKLAALRSRWCDCFPRFFGFFRF
Sbjct: 125 TIRNELVKRAASAYLQSAAILVGRNESCFVGFWERLRIKLAALRSRWCDCFPRFFGFFRF 184

Query: 121 AF 122
           AF
Sbjct: 185 AF 186

[Close]

BLAST of Cp4.1LG10g06170 vs. NCBI nr
Match: KAA0052530.1 (putative E3 ubiquitin-protein ligase arkadia-A [Cucumis melo var. makuwa])

HSP 1 Score: 219 bits (558), Expect = 2.15e-71
Identity = 108/121 (89.26%), Postives = 113/121 (93.39%), Query Frame = 0


Query: 1   MDDPHKLQNLPSFKLSRYSSTVRDSDAGDDLRYTSLKDILLNSPSYSGVNEFNEFNLSNI 60
           M+D HKLQN+PSFKLSRYSS+ RDSDAGDDLRYTSLKDILLNSPSYSGVN+FNEFN SNI
Sbjct: 7   MEDSHKLQNIPSFKLSRYSSSARDSDAGDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNI 66

Query: 61  TIRNELVKRAASAYLQSAAILVGRNESCFVGFWERLRIKLAALRSRWCDCFPRFFGFFRF 120
           +IRNELVKRAASAYLQSAAILV RNES FVGFWERLRIKLAALRSRWCDCF R FGFF F
Sbjct: 67  SIRNELVKRAASAYLQSAAILVSRNESGFVGFWERLRIKLAALRSRWCDCFHRIFGFFSF 126

[Close]

BLAST of Cp4.1LG10g06170 vs. ExPASy TrEMBL
Match: A0A6J1ISV4 (uncharacterized protein LOC111478115 OS=Cucurbita maxima OX=3661 GN=LOC111478115 PE=4 SV=1)

HSP 1 Score: 249 bits (636), Expect = 1.41e-83
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0


Query: 1   MDDPHKLQNLPSFKLSRYSSTVRDSDAGDDLRYTSLKDILLNSPSYSGVNEFNEFNLSNI 60
           MDDPHKLQNLPSFKLSRYSSTVRDSDAGDDLRYTSLKDILLNSPSYSGVNEFNEFNLSNI
Sbjct: 10  MDDPHKLQNLPSFKLSRYSSTVRDSDAGDDLRYTSLKDILLNSPSYSGVNEFNEFNLSNI 69

Query: 61  TIRNELVKRAASAYLQSAAILVGRNESCFVGFWERLRIKLAALRSRWCDCFPRFFGFFRF 120
           TIRNELVKRAASAYLQSAAILVGRNESCFVGFWERLRIKLAALRSRWCDCFPRFFGFFRF
Sbjct: 70  TIRNELVKRAASAYLQSAAILVGRNESCFVGFWERLRIKLAALRSRWCDCFPRFFGFFRF 129

Query: 121 AF 122
           AF
Sbjct: 130 AF 131

[Close]

BLAST of Cp4.1LG10g06170 vs. ExPASy TrEMBL
Match: A0A6J1EJR7 (uncharacterized protein LOC111433238 OS=Cucurbita moschata OX=3662 GN=LOC111433238 PE=4 SV=1)

HSP 1 Score: 248 bits (632), Expect = 5.75e-83
Identity = 121/122 (99.18%), Postives = 121/122 (99.18%), Query Frame = 0


Query: 1   MDDPHKLQNLPSFKLSRYSSTVRDSDAGDDLRYTSLKDILLNSPSYSGVNEFNEFNLSNI 60
           MDDPHKLQNLPSFKLSRYSSTVRDSDAGDDLRYTSLKDILLNSPSYSGVNEFNEFNLSNI
Sbjct: 10  MDDPHKLQNLPSFKLSRYSSTVRDSDAGDDLRYTSLKDILLNSPSYSGVNEFNEFNLSNI 69

Query: 61  TIRNELVKRAASAYLQSAAILVGRNESCFVGFWERLRIKLAALRSRWCDCFPRFFGFFRF 120
           TIRNELVKRAASAYLQSAAILVGRNESCFVGFWERLRIKLAALRSRWCDCFPRFFGFFRF
Sbjct: 70  TIRNELVKRAASAYLQSAAILVGRNESCFVGFWERLRIKLAALRSRWCDCFPRFFGFFRF 129

Query: 121 AF 122
            F
Sbjct: 130 VF 131

[Close]

BLAST of Cp4.1LG10g06170 vs. ExPASy TrEMBL
Match: A0A5A7UBK0 (Putative E3 ubiquitin-protein ligase arkadia-A OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold120G001310 PE=4 SV=1)

HSP 1 Score: 219 bits (558), Expect = 1.04e-71
Identity = 108/121 (89.26%), Postives = 113/121 (93.39%), Query Frame = 0


Query: 1   MDDPHKLQNLPSFKLSRYSSTVRDSDAGDDLRYTSLKDILLNSPSYSGVNEFNEFNLSNI 60
           M+D HKLQN+PSFKLSRYSS+ RDSDAGDDLRYTSLKDILLNSPSYSGVN+FNEFN SNI
Sbjct: 7   MEDSHKLQNIPSFKLSRYSSSARDSDAGDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNI 66

Query: 61  TIRNELVKRAASAYLQSAAILVGRNESCFVGFWERLRIKLAALRSRWCDCFPRFFGFFRF 120
           +IRNELVKRAASAYLQSAAILV RNES FVGFWERLRIKLAALRSRWCDCF R FGFF F
Sbjct: 67  SIRNELVKRAASAYLQSAAILVSRNESGFVGFWERLRIKLAALRSRWCDCFHRIFGFFSF 126

[Close]

BLAST of Cp4.1LG10g06170 vs. ExPASy TrEMBL
Match: A0A0A0KKP9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G524030 PE=4 SV=1)

HSP 1 Score: 219 bits (557), Expect = 1.58e-71
Identity = 107/121 (88.43%), Postives = 113/121 (93.39%), Query Frame = 0


Query: 1   MDDPHKLQNLPSFKLSRYSSTVRDSDAGDDLRYTSLKDILLNSPSYSGVNEFNEFNLSNI 60
           M+DPH+LQN+PSFKLSRYSS+ RDSDA DDLRYTSLKDILLNSPSYSGVN+FNEFN SNI
Sbjct: 9   MEDPHRLQNIPSFKLSRYSSSARDSDASDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNI 68

Query: 61  TIRNELVKRAASAYLQSAAILVGRNESCFVGFWERLRIKLAALRSRWCDCFPRFFGFFRF 120
           +IRNELVKRAASAYLQSAAILV RNES FVGFWERLRIKLAALRSRWCDCF R FGFF F
Sbjct: 69  SIRNELVKRAASAYLQSAAILVSRNESGFVGFWERLRIKLAALRSRWCDCFHRIFGFFSF 128

[Close]

BLAST of Cp4.1LG10g06170 vs. ExPASy TrEMBL
Match: A0A6J1CYB8 (uncharacterized protein LOC111015712 OS=Momordica charantia OX=3673 GN=LOC111015712 PE=4 SV=1)

HSP 1 Score: 183 bits (464), Expect = 3.36e-57
Identity = 91/106 (85.85%), Postives = 97/106 (91.51%), Query Frame = 0


Query: 1   MDDPHKLQNLPSFKLSRYSSTVRDSDAGDDLRYTSLKDILLNSPSYSGVNEFNEFNLSNI 60
           + + HKLQN+PSFKLSRYSS  RDSDAGDDLRY SLKDILLNSPSYSGVN+FN+FN SNI
Sbjct: 4   ISESHKLQNIPSFKLSRYSSGARDSDAGDDLRYISLKDILLNSPSYSGVNDFNDFNSSNI 63

Query: 61  TIRNELVKRAASAYLQSAAILVGRNESCFVGFWERLRIKLAALRSR 106
           +IRNELVKRAASAYLQSAAILV RNESCFV FWERLR KLAALRSR
Sbjct: 64  SIRNELVKRAASAYLQSAAILVSRNESCFVSFWERLRNKLAALRSR 109

[Close]

BLAST of Cp4.1LG10g06170 vs. TAIR 10
Match: AT4G18395.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 52.4 bits (124), Expect = 3.0e-07
Identity = 32/84 (38.10%), Postives = 50/84 (59.52%), Query Frame = 0


Query: 22 VRDSDAGDDLRYTSLKDILLNS---------PSYSGVNE----FNEFNLSNITIRNELVK 81
          + D +  ++L+YTSLKD++ +S         P YS  ++     +E + SNI I NELVK
Sbjct: 10 ISDDNDQNNLQYTSLKDVISSSDGFGSLFCHPQYSVPSQDGFLLSEMDSSNIAISNELVK 69

Query: 82 RAASAYLQSAAILVGRNESCFVGF 93
          RAAS Y+QS+ I++  + + F  F
Sbjct: 70 RAASMYVQSSMIVIAPDTNWFQRF 93

The following BLAST results are available for this feature:

BLAST of Cp4.1LG10g06170 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG10g06170 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022977989.1	2.91e-83	100.00	uncharacterized protein LOC111478115 [Cucurbita maxima]	[more]
KAG7034735.1	8.80e-83	99.18	hypothetical protein SDJN02_04465, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022925985.1	1.19e-82	99.18	uncharacterized protein LOC111433238 [Cucurbita moschata] >KAG6581442.1 hypothet...	[more]
XP_023544918.1	1.85e-82	100.00	uncharacterized protein LOC111804374 [Cucurbita pepo subsp. pepo]	[more]
KAA0052530.1	2.15e-71	89.26	putative E3 ubiquitin-protein ligase arkadia-A [Cucumis melo var. makuwa]	[more]

BLAST of Cp4.1LG10g06170 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ISV4	1.41e-83	100.00	uncharacterized protein LOC111478115 OS=Cucurbita maxima OX=3661 GN=LOC111478115...	[more]
A0A6J1EJR7	5.75e-83	99.18	uncharacterized protein LOC111433238 OS=Cucurbita moschata OX=3662 GN=LOC1114332...	[more]
A0A5A7UBK0	1.04e-71	89.26	Putative E3 ubiquitin-protein ligase arkadia-A OS=Cucumis melo var. makuwa OX=11...	[more]
A0A0A0KKP9	1.58e-71	88.43	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G524030 PE=4 SV=1	[more]
A0A6J1CYB8	3.36e-57	85.85	uncharacterized protein LOC111015712 OS=Momordica charantia OX=3673 GN=LOC111015...	[more]

BLAST of Cp4.1LG10g06170 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G18395.1	3.0e-07	38.10	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34569:SF15	UBIQUITIN-PROTEIN LIGASE ARKADIA-A, PUTATIVE-RELATED	coord: 2..121
None	No IPR available	PANTHER	PTHR34569	EXPRESSED PROTEIN	coord: 2..121

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG10g06170.1	Cp4.1LG10g06170.1	mRNA