Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCATGCTTGTTCCAGTGAAAAAGATTATGGAAGACGCACCGTGGACCGAAAAGCTTGAAGCCCTAACGCATATTCTGGTGTGCCCCACCACCGCTCCGCCGCTTGCGTCTCAGTTCTTCATCGCCACCAAGATCCCCTGCTACCTGAATTGGGACTACCCGCCGCTCCTCTGCTCCAAACCTTCTATTTTCCCCTTCCCCTCTCTTCACCTTCAATGGGGCTTCTCTCTGTTCCTGAAAAGACTCTCCCGATTGGGGCTCCCCATGACCTCTTGGCGATCCAAATGCCCTTATCAACTCCCCCCGCCGTTGCTTCTCGCTCAAGGCGTCGACGCCGCGCAGTGGGACGATGAACAGAGGAGAAAGTACGTGAGAATGAGGCTGAGAAGAAAGCGTCTGGGCAGCGATGTTAATCCCTTAATCCCAATTATGATTCCCAATATGTTGCTGTTTTGTCTTCTGCTATGGAACCCATTGTCTTCCACTCATTATTAA
mRNA sequence
ATGTTCATGCTTGTTCCAGTGAAAAAGATTATGGAAGACGCACCGTGGACCGAAAAGCTTGAAGCCCTAACGCATATTCTGGTGTGCCCCACCACCGCTCCGCCGCTTGCGTCTCAGTTCTTCATCGCCACCAAGATCCCCTGCTACCTGAATTGGGACTACCCGCCGCTCCTCTGCTCCAAACCTTCTATTTTCCCCTTCCCCTCTCTTCACCTTCAATGGGGCTTCTCTCTGTTCCTGAAAAGACTCTCCCGATTGGGGCTCCCCATGACCTCTTGGCGATCCAAATGCCCTTATCAACTCCCCCCGCCGTTGCTTCTCGCTCAAGGCGTCGACGCCGCGCAGTGGGACGATGAACAGAGGAGAAAGTACGTGAGAATGAGGCTGAGAAGAAAGCGTCTGGGCAGCGATGTTAATCCCTTAATCCCAATTATGATTCCCAATATGTTGCTGTTTTGTCTTCTGCTATGGAACCCATTGTCTTCCACTCATTATTAA
Coding sequence (CDS)
ATGTTCATGCTTGTTCCAGTGAAAAAGATTATGGAAGACGCACCGTGGACCGAAAAGCTTGAAGCCCTAACGCATATTCTGGTGTGCCCCACCACCGCTCCGCCGCTTGCGTCTCAGTTCTTCATCGCCACCAAGATCCCCTGCTACCTGAATTGGGACTACCCGCCGCTCCTCTGCTCCAAACCTTCTATTTTCCCCTTCCCCTCTCTTCACCTTCAATGGGGCTTCTCTCTGTTCCTGAAAAGACTCTCCCGATTGGGGCTCCCCATGACCTCTTGGCGATCCAAATGCCCTTATCAACTCCCCCCGCCGTTGCTTCTCGCTCAAGGCGTCGACGCCGCGCAGTGGGACGATGAACAGAGGAGAAAGTACGTGAGAATGAGGCTGAGAAGAAAGCGTCTGGGCAGCGATGTTAATCCCTTAATCCCAATTATGATTCCCAATATGTTGCTGTTTTGTCTTCTGCTATGGAACCCATTGTCTTCCACTCATTATTAA
Protein sequence
MFMLVPVKKIMEDAPWTEKLEALTHILVCPTTAPPLASQFFIATKIPCYLNWDYPPLLCSKPSIFPFPSLHLQWGFSLFLKRLSRLGLPMTSWRSKCPYQLPPPLLLAQGVDAAQWDDEQRRKYVRMRLRRKRLGSDVNPLIPIMIPNMLLFCLLLWNPLSSTHY
Homology
BLAST of Cp4.1LG10g05140 vs. NCBI nr
Match:
XP_022978775.1 (uncharacterized protein LOC111478635 [Cucurbita maxima])
HSP 1 Score: 332 bits (851), Expect = 7.93e-115
Identity = 155/162 (95.68%), Postives = 158/162 (97.53%), Query Frame = 0
Query: 3 MLVPVKKIMEDAPWTEKLEALTHILVCPTTAPPLASQFFIATKIPCYLNWDYPPLLCSKP 62
M VPVKKIMEDAPWT+KLEALTHIL+CPTTAPPLASQFFIATKIPCYLNWDYPPLLCSKP
Sbjct: 1 MFVPVKKIMEDAPWTQKLEALTHILLCPTTAPPLASQFFIATKIPCYLNWDYPPLLCSKP 60
Query: 63 SIFPFPSLHLQWGFSLFLKRLSRLGLPMTSWRSKCPYQLPPPLLLAQGVDAAQWDDEQRR 122
SIFPFPSLHLQWGFSLFLKRLSRLGLPMTSWRSKCPYQLPPPLLLA+GVD AQWDDEQRR
Sbjct: 61 SIFPFPSLHLQWGFSLFLKRLSRLGLPMTSWRSKCPYQLPPPLLLARGVDGAQWDDEQRR 120
Query: 123 KYVRMRLRRKRLGSDVNPLIPIMIPNMLLFCLLLWNPLSSTH 164
YVRMRLRRKRLGSDVNPLIPIMIPNMLLFCLLLW PLSSTH
Sbjct: 121 NYVRMRLRRKRLGSDVNPLIPIMIPNMLLFCLLLWKPLSSTH 162
BLAST of Cp4.1LG10g05140 vs. NCBI nr
Match:
KAG6604466.1 (hypothetical protein SDJN03_05075, partial [Cucurbita argyrosperma subsp. sororia] >KAG7034610.1 hypothetical protein SDJN02_04340, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 323 bits (829), Expect = 1.36e-111
Identity = 150/154 (97.40%), Postives = 153/154 (99.35%), Query Frame = 0
Query: 11 MEDAPWTEKLEALTHILVCPTTAPPLASQFFIATKIPCYLNWDYPPLLCSKPSIFPFPSL 70
MEDAPWTEKLEALTHIL+CPTTAPPLASQFFIATKIPCYLNWDYPPLLCSKPSIFPFPSL
Sbjct: 1 MEDAPWTEKLEALTHILLCPTTAPPLASQFFIATKIPCYLNWDYPPLLCSKPSIFPFPSL 60
Query: 71 HLQWGFSLFLKRLSRLGLPMTSWRSKCPYQLPPPLLLAQGVDAAQWDDEQRRKYVRMRLR 130
HLQWGFSLFLKRLSRLGLP+TSWRSKCPYQLPPPLLLAQGVDAAQWDDEQRRKYVR+RLR
Sbjct: 61 HLQWGFSLFLKRLSRLGLPVTSWRSKCPYQLPPPLLLAQGVDAAQWDDEQRRKYVRIRLR 120
Query: 131 RKRLGSDVNPLIPIMIPNMLLFCLLLWNPLSSTH 164
RKRLGSDVNPLIPIMIPNMLLFCLLLW PLSSTH
Sbjct: 121 RKRLGSDVNPLIPIMIPNMLLFCLLLWKPLSSTH 154
BLAST of Cp4.1LG10g05140 vs. NCBI nr
Match:
XP_004134687.2 (uncharacterized protein LOC101221431 [Cucumis sativus])
HSP 1 Score: 290 bits (743), Expect = 2.59e-98
Identity = 135/160 (84.38%), Postives = 146/160 (91.25%), Query Frame = 0
Query: 4 LVPVKKIMEDAPWTEKLEALTHILVCPTTAPPLASQFFIATKIPCYLNWDYPPLLCSKPS 63
L+P+K+ ME+APW +KL+ALTHIL+CPTTAPPLASQFFIATKIPCYLNWDYPPLLC K S
Sbjct: 5 LLPMKETMEEAPWPQKLQALTHILLCPTTAPPLASQFFIATKIPCYLNWDYPPLLCPKSS 64
Query: 64 IFPFPSLHLQWGFSLFLKRLSRLGLPMTSWRSKCPYQLPPPLLLAQGVDAAQWDDEQRRK 123
IFPF SLHLQWGFSLFLK+LSR GLP TSWRSKCPYQLPPPL+LA+GV AQWDDEQR
Sbjct: 65 IFPFLSLHLQWGFSLFLKKLSRFGLPKTSWRSKCPYQLPPPLILAKGVHPAQWDDEQRIN 124
Query: 124 YVRMRLRRKRLGSDVNPLIPIMIPNMLLFCLLLWNPLSST 163
Y RMRLRRKRLGSDV+PLIPIMIPNMLLF LLLWNP SST
Sbjct: 125 YARMRLRRKRLGSDVHPLIPIMIPNMLLFTLLLWNPFSST 164
BLAST of Cp4.1LG10g05140 vs. NCBI nr
Match:
XP_022926954.1 (uncharacterized protein LOC111433914 [Cucurbita moschata])
HSP 1 Score: 286 bits (732), Expect = 8.43e-97
Identity = 130/153 (84.97%), Postives = 142/153 (92.81%), Query Frame = 0
Query: 11 MEDAPWTEKLEALTHILVCPTTAPPLASQFFIATKIPCYLNWDYPPLLCSKPSIFPFPSL 70
ME++PW +KL+ LTHIL+CPTTAPPLASQ+F+ATKIPCYLNWDYPPLLC KPSIFPFPSL
Sbjct: 1 MEESPWPQKLQVLTHILLCPTTAPPLASQYFVATKIPCYLNWDYPPLLCPKPSIFPFPSL 60
Query: 71 HLQWGFSLFLKRLSRLGLPMTSWRSKCPYQLPPPLLLAQGVDAAQWDDEQRRKYVRMRLR 130
HLQWGFSLFLKRLSR LP TSWRSKCP+Q PPPL+LA+GVD AQW DEQRR YVRMRLR
Sbjct: 61 HLQWGFSLFLKRLSRFALPKTSWRSKCPFQHPPPLILAKGVDPAQWGDEQRRTYVRMRLR 120
Query: 131 RKRLGSDVNPLIPIMIPNMLLFCLLLWNPLSST 163
RKRLGSDV+PLIPI+IPNMLLF LLLWNPLSST
Sbjct: 121 RKRLGSDVHPLIPIIIPNMLLFSLLLWNPLSST 153
BLAST of Cp4.1LG10g05140 vs. NCBI nr
Match:
XP_008439813.1 (PREDICTED: uncharacterized protein LOC103484499 [Cucumis melo])
HSP 1 Score: 286 bits (731), Expect = 1.75e-96
Identity = 133/160 (83.12%), Postives = 144/160 (90.00%), Query Frame = 0
Query: 4 LVPVKKIMEDAPWTEKLEALTHILVCPTTAPPLASQFFIATKIPCYLNWDYPPLLCSKPS 63
L+ +KK ME+ PW++KL+ALTHIL+CP TAPPLASQFFIATKIPCYLNWDYPPLLC K S
Sbjct: 5 LLSMKKTMEETPWSQKLQALTHILLCPDTAPPLASQFFIATKIPCYLNWDYPPLLCPKSS 64
Query: 64 IFPFPSLHLQWGFSLFLKRLSRLGLPMTSWRSKCPYQLPPPLLLAQGVDAAQWDDEQRRK 123
IFPF SLHLQWGFSLFLK+LSR GLP TSWRSKCPYQLPPPL+LA+GV AQWDDEQR
Sbjct: 65 IFPFLSLHLQWGFSLFLKKLSRFGLPKTSWRSKCPYQLPPPLILAKGVHPAQWDDEQRIN 124
Query: 124 YVRMRLRRKRLGSDVNPLIPIMIPNMLLFCLLLWNPLSST 163
Y RMRLRRKRLGSDV+PLIPIMIPNMLLF LLLWNP SST
Sbjct: 125 YARMRLRRKRLGSDVHPLIPIMIPNMLLFTLLLWNPFSST 164
BLAST of Cp4.1LG10g05140 vs. ExPASy TrEMBL
Match:
A0A6J1IR68 (uncharacterized protein LOC111478635 OS=Cucurbita maxima OX=3661 GN=LOC111478635 PE=4 SV=1)
HSP 1 Score: 332 bits (851), Expect = 3.84e-115
Identity = 155/162 (95.68%), Postives = 158/162 (97.53%), Query Frame = 0
Query: 3 MLVPVKKIMEDAPWTEKLEALTHILVCPTTAPPLASQFFIATKIPCYLNWDYPPLLCSKP 62
M VPVKKIMEDAPWT+KLEALTHIL+CPTTAPPLASQFFIATKIPCYLNWDYPPLLCSKP
Sbjct: 1 MFVPVKKIMEDAPWTQKLEALTHILLCPTTAPPLASQFFIATKIPCYLNWDYPPLLCSKP 60
Query: 63 SIFPFPSLHLQWGFSLFLKRLSRLGLPMTSWRSKCPYQLPPPLLLAQGVDAAQWDDEQRR 122
SIFPFPSLHLQWGFSLFLKRLSRLGLPMTSWRSKCPYQLPPPLLLA+GVD AQWDDEQRR
Sbjct: 61 SIFPFPSLHLQWGFSLFLKRLSRLGLPMTSWRSKCPYQLPPPLLLARGVDGAQWDDEQRR 120
Query: 123 KYVRMRLRRKRLGSDVNPLIPIMIPNMLLFCLLLWNPLSSTH 164
YVRMRLRRKRLGSDVNPLIPIMIPNMLLFCLLLW PLSSTH
Sbjct: 121 NYVRMRLRRKRLGSDVNPLIPIMIPNMLLFCLLLWKPLSSTH 162
BLAST of Cp4.1LG10g05140 vs. ExPASy TrEMBL
Match:
A0A0A0KK88 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G518100 PE=4 SV=1)
HSP 1 Score: 290 bits (743), Expect = 1.25e-98
Identity = 135/160 (84.38%), Postives = 146/160 (91.25%), Query Frame = 0
Query: 4 LVPVKKIMEDAPWTEKLEALTHILVCPTTAPPLASQFFIATKIPCYLNWDYPPLLCSKPS 63
L+P+K+ ME+APW +KL+ALTHIL+CPTTAPPLASQFFIATKIPCYLNWDYPPLLC K S
Sbjct: 5 LLPMKETMEEAPWPQKLQALTHILLCPTTAPPLASQFFIATKIPCYLNWDYPPLLCPKSS 64
Query: 64 IFPFPSLHLQWGFSLFLKRLSRLGLPMTSWRSKCPYQLPPPLLLAQGVDAAQWDDEQRRK 123
IFPF SLHLQWGFSLFLK+LSR GLP TSWRSKCPYQLPPPL+LA+GV AQWDDEQR
Sbjct: 65 IFPFLSLHLQWGFSLFLKKLSRFGLPKTSWRSKCPYQLPPPLILAKGVHPAQWDDEQRIN 124
Query: 124 YVRMRLRRKRLGSDVNPLIPIMIPNMLLFCLLLWNPLSST 163
Y RMRLRRKRLGSDV+PLIPIMIPNMLLF LLLWNP SST
Sbjct: 125 YARMRLRRKRLGSDVHPLIPIMIPNMLLFTLLLWNPFSST 164
BLAST of Cp4.1LG10g05140 vs. ExPASy TrEMBL
Match:
A0A6J1EGM1 (uncharacterized protein LOC111433914 OS=Cucurbita moschata OX=3662 GN=LOC111433914 PE=4 SV=1)
HSP 1 Score: 286 bits (732), Expect = 4.08e-97
Identity = 130/153 (84.97%), Postives = 142/153 (92.81%), Query Frame = 0
Query: 11 MEDAPWTEKLEALTHILVCPTTAPPLASQFFIATKIPCYLNWDYPPLLCSKPSIFPFPSL 70
ME++PW +KL+ LTHIL+CPTTAPPLASQ+F+ATKIPCYLNWDYPPLLC KPSIFPFPSL
Sbjct: 1 MEESPWPQKLQVLTHILLCPTTAPPLASQYFVATKIPCYLNWDYPPLLCPKPSIFPFPSL 60
Query: 71 HLQWGFSLFLKRLSRLGLPMTSWRSKCPYQLPPPLLLAQGVDAAQWDDEQRRKYVRMRLR 130
HLQWGFSLFLKRLSR LP TSWRSKCP+Q PPPL+LA+GVD AQW DEQRR YVRMRLR
Sbjct: 61 HLQWGFSLFLKRLSRFALPKTSWRSKCPFQHPPPLILAKGVDPAQWGDEQRRTYVRMRLR 120
Query: 131 RKRLGSDVNPLIPIMIPNMLLFCLLLWNPLSST 163
RKRLGSDV+PLIPI+IPNMLLF LLLWNPLSST
Sbjct: 121 RKRLGSDVHPLIPIIIPNMLLFSLLLWNPLSST 153
BLAST of Cp4.1LG10g05140 vs. ExPASy TrEMBL
Match:
A0A1S3B097 (uncharacterized protein LOC103484499 OS=Cucumis melo OX=3656 GN=LOC103484499 PE=4 SV=1)
HSP 1 Score: 286 bits (731), Expect = 8.46e-97
Identity = 133/160 (83.12%), Postives = 144/160 (90.00%), Query Frame = 0
Query: 4 LVPVKKIMEDAPWTEKLEALTHILVCPTTAPPLASQFFIATKIPCYLNWDYPPLLCSKPS 63
L+ +KK ME+ PW++KL+ALTHIL+CP TAPPLASQFFIATKIPCYLNWDYPPLLC K S
Sbjct: 5 LLSMKKTMEETPWSQKLQALTHILLCPDTAPPLASQFFIATKIPCYLNWDYPPLLCPKSS 64
Query: 64 IFPFPSLHLQWGFSLFLKRLSRLGLPMTSWRSKCPYQLPPPLLLAQGVDAAQWDDEQRRK 123
IFPF SLHLQWGFSLFLK+LSR GLP TSWRSKCPYQLPPPL+LA+GV AQWDDEQR
Sbjct: 65 IFPFLSLHLQWGFSLFLKKLSRFGLPKTSWRSKCPYQLPPPLILAKGVHPAQWDDEQRIN 124
Query: 124 YVRMRLRRKRLGSDVNPLIPIMIPNMLLFCLLLWNPLSST 163
Y RMRLRRKRLGSDV+PLIPIMIPNMLLF LLLWNP SST
Sbjct: 125 YARMRLRRKRLGSDVHPLIPIMIPNMLLFTLLLWNPFSST 164
BLAST of Cp4.1LG10g05140 vs. ExPASy TrEMBL
Match:
A0A5A7UDV0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G007700 PE=4 SV=1)
HSP 1 Score: 281 bits (720), Expect = 2.76e-95
Identity = 130/153 (84.97%), Postives = 139/153 (90.85%), Query Frame = 0
Query: 11 MEDAPWTEKLEALTHILVCPTTAPPLASQFFIATKIPCYLNWDYPPLLCSKPSIFPFPSL 70
ME+ PW++KL+ALTHIL+CP TAPPLASQFFIATKIPCYLNWDYPPLLC K SIFPF SL
Sbjct: 1 MEETPWSQKLQALTHILLCPDTAPPLASQFFIATKIPCYLNWDYPPLLCPKSSIFPFLSL 60
Query: 71 HLQWGFSLFLKRLSRLGLPMTSWRSKCPYQLPPPLLLAQGVDAAQWDDEQRRKYVRMRLR 130
HLQWGFSLFLK+LSR GLP TSWRSKCPYQLPPPL+LA+GV AQWDDEQR Y RMRLR
Sbjct: 61 HLQWGFSLFLKKLSRFGLPKTSWRSKCPYQLPPPLILAKGVHPAQWDDEQRINYARMRLR 120
Query: 131 RKRLGSDVNPLIPIMIPNMLLFCLLLWNPLSST 163
RKRLGSDV+PLIPIMIPNMLLF LLLWNP SST
Sbjct: 121 RKRLGSDVHPLIPIMIPNMLLFTLLLWNPFSST 153
BLAST of Cp4.1LG10g05140 vs. TAIR 10
Match:
AT2G33855.1 (unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )
HSP 1 Score: 165.6 bits (418), Expect = 3.3e-41
Identity = 80/151 (52.98%), Postives = 104/151 (68.87%), Query Frame = 0
Query: 11 MEDAPWTEKLEALTHILVCPTTAPPLASQFFIATKIPCYLNWDYPPLLCSKPSIFPFPSL 70
ME+ W ++++A+THIL PTT P L SQFFI IP Y++WDYPP+ +
Sbjct: 1 MEETTWGQRIQAVTHILTNPTTKPSLYSQFFIGAIIPNYVSWDYPPV---------YSPT 60
Query: 71 HL-QWGFSLFLKRLSRLGLPMTSWRSKCPYQLPPPLLLAQGVDAAQWDDEQRRKYVRMRL 130
HL QW S F KR+SR GLP TSWRS PY PP ++A GV+ +W E+RR+Y R RL
Sbjct: 61 HLRQWWVSQFFKRVSRFGLPDTSWRSNSPYYQPPAAVMAVGVEEGKWGKEERREYARKRL 120
Query: 131 RRKRLGSDVNPLIPIMIPNMLLFCLLLWNPL 161
RRKRL ++VNP IP+++PN+LLF LLLW+PL
Sbjct: 121 RRKRLVNEVNPYIPLLVPNLLLFTLLLWDPL 142
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
XP_022978775.1 | 7.93e-115 | 95.68 | uncharacterized protein LOC111478635 [Cucurbita maxima] | [more] |
KAG6604466.1 | 1.36e-111 | 97.40 | hypothetical protein SDJN03_05075, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
XP_004134687.2 | 2.59e-98 | 84.38 | uncharacterized protein LOC101221431 [Cucumis sativus] | [more] |
XP_022926954.1 | 8.43e-97 | 84.97 | uncharacterized protein LOC111433914 [Cucurbita moschata] | [more] |
XP_008439813.1 | 1.75e-96 | 83.13 | PREDICTED: uncharacterized protein LOC103484499 [Cucumis melo] | [more] |
Match Name | E-value | Identity | Description | |
A0A6J1IR68 | 3.84e-115 | 95.68 | uncharacterized protein LOC111478635 OS=Cucurbita maxima OX=3661 GN=LOC111478635... | [more] |
A0A0A0KK88 | 1.25e-98 | 84.38 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G518100 PE=4 SV=1 | [more] |
A0A6J1EGM1 | 4.08e-97 | 84.97 | uncharacterized protein LOC111433914 OS=Cucurbita moschata OX=3662 GN=LOC1114339... | [more] |
A0A1S3B097 | 8.46e-97 | 83.13 | uncharacterized protein LOC103484499 OS=Cucumis melo OX=3656 GN=LOC103484499 PE=... | [more] |
A0A5A7UDV0 | 2.76e-95 | 84.97 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
Match Name | E-value | Identity | Description | |
AT2G33855.1 | 3.3e-41 | 52.98 | unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae ... | [more] |