Cp4.1LG10g04990 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG10g04990
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionRNA polymerase II transcription factor B subunit 2
LocationCp4.1LG10: 1156602 .. 1163734 (+)
RNA-Seq ExpressionCp4.1LG10g04990
SyntenyCp4.1LG10g04990
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TAATTTAAGATGGAGACGACGTGTCGTTCTTCGTCTTCGGTCTTCGGAATGGACGATACGGGAAGCAGGCAGAGAGTCAATCGTCAAACTACGAAGGTTGATTAGCTGTTAATTATTTGATTGATTGATTTCAGAAGATCCAAGACTTCACCATTGGCTATAAATTCTCACTGCGGTCTCACTCCCGAGCTGGAAGCTGCAATTCTTTATAATTCCTGATTCTGTGTATCCGACACTCGAGGGATTCTCCTTTGATTGCTGGAAGTTTTGCAGAACCCTAAAGGACTAGCTACGGAAAGAAGGAAAGCTCAATCCAGAATGCCTCAAGTAAAGATCATAGCGAAGAATTTTATGGACATGGTGGCCTCCTTGCCCGCCATGAAGCTCGATCAACTCTATGAGAATGCCTTCATCTGCGAAGCCATTCTCAGGTCCTTGCTTGCCACTCTAAATGCTTTTATTTTTTGTTTCGGGTCCTATTAATTACTGAAACGACTAAAACCTTGAGTTTGTATGTGATTGTGTTGGCCATCTGACCATGATTTTCATATCCTGGAAACTTGTTAATTATACGATGTCATTGAAGCTGTTTTTTTATTTATTATTTGATTCATATGTTCTAGTTTTGTTATTGATGCTGAATTTCCATATTTTTTCATTAGTTGTTTGTCATTCTTCCTTCTCGTTCATTGAGTTAGAGGACCGTGGGCAAAGTTCTTGGTATTTGCTAGTGAATTTAACTTAGAAGTAGCTAGTTAATCCTAGTTTCTTGAGTTTTTCATTTATAGTGCCAAACATCTTTTGTAATCAGGTCACTTCCACCCCTGGCCAAGAAGTTTGTTTTACAAATGTTATACATTGATGCTCCAGTAACCGCTAAGTCCATGGAGGAGTGGGTGCTCCCAGATGGAGTCTCGAAGTATAAGGTTGCCGTTGATCGATTGATTCAATTGAGAGTATTTATTGAGACTGCGGATAGGTGTTTATTCTCTTCTCGCATTTTCCATAGAATTTGATATTCTATCACAATGCTTTTCAAATGCATCCTTAGTTTATTAGATCCAAGCAAGCTGACATTCAAGCGTTCAAGAGGAAGGCCAAGTTTTTGGAGTTTTCTTTTTCTTTTTCTTTTTATCTTCATCTTTTTCTCTGATGTTTCTTTCCATCAGTTGATAGATTGCCCACCTGTTCATATCATGATATCATCAGAATTGAGAGGTTCATGCAAGGAGAAATTAAATTTTGAACTTGTGGAGCAATATGTAAATGCTTTTGCATTATTTCTGTTTTGATCTCACTGAAATTGTTTATAATTCTGTCAGCAGTTTTGCATGGTTTGTAGTGCTCAACCCAATCCTTTGTTGTAATGTTTTCTGTGAACCCCCATTTTATTGATAGGAAAAGAGAAACAACCTACAAGCTAAATCCAACGTTCCAAGCTAACCTCCAAAAGCTTTTAATACATGGGTATGTTTTCTCTCACTTGGCTCGGTGAATGCATTTCTAAACCAAATATGCAAGGAGGGATACGTGATTTGTCCCATTTCCATTCTACTCAGCACAAACATTATGATGCATGGATCTTTCTTAATATATGCACATTTTCTTTTTTACTTTCTGCCTTGTTTACATTCGCCAAGTTCAAGTAGATGATTACTCATCTTCTATAAAAGGAAGCTGATCCTGGAGTTTAGACACCTTGATTTTAACATTTAAAAGTGATTTACTCTTGGTTTAAAAAATGACAATGAATTTGGGATCTTGCAGTGAAGTTCTAGCCAGAGAACCAATGCCTTCTAATATTACCGTGAGGCTTCCAAATTTGGAAGAACTTGAGGCTTATGCTCTGGATCAGTGGGAGGTTGGACAATTATCAAAATAATTTTAATTATATGTATCTGGTTGCATCCTCTCTAGTTTATTCTGCGGCTAGTATTGATTCCATCCTCTTGGACTCAATGAAAGGCTACCTGTTTTCTCAGTTGCTTACTTTACAAGTTTTGATCGTGGATATTCTTATGATCTGTTATTGTGTTCGTTCAGTGCTTCTTGCTGCAATTGATAAACTCAGGCCAAGCTGATAAGCCCTCAAATATTAGTTCTTCTGTGATGAAAGTTTTCCAGAAAGGCCTTTTAAGTCAGAGGTTAAAATCTTGTTCAATGTACACTCGCTTATATATTGCAATGACTTATTATGCCTGATAATATGACATGTATGGTATCCAGGGATAAAGAAACTCCACGATTAACTGAGAGCGGTTTCCAGTTCTTGGTATGAATCACATGAACCATAGACTTCTTGAAATCCGCATTGATCTATCTCACCAGGGATTCTTGTGATGTATGTAAACTTCAGTTGATGGAAACAAATGCACAACTTTGGTATATCATCAGAGAATATATATCTAATGCCGAGGTTTGTTTGTGTTTTCCATTTTTTATTGTCATGTCCTGTTGCCTTCCTCTGAGGAAAAACTATATATATTCTGTCATTAATTTGGAACACTTTCTATTTGAATCCCAATGATGGACTATTGTTACTCAAAGTAAAAACCAACTATTGTTAATTTTTAGACTGTTTTCTTTTGATTCATTGGTTTGTGTAATTTTATTATTTATTTTCTCTTATTCCTTTTTTGTAAATGCTTTATCAATATGGTGCAGGAGCGAGATGTTGATCCTGCAGATTTGATTTCTTTTCTGCTGGAGCTTAGTTTTCACGTGACAGGAGAGGTATCAATTCTTTGATCATCTTTTAATTCCTTGTTTTCATCTTTATCTTTTATTGTTGTGTTCTTCTTTTTTATCATTATAGAACTCCTCTTTTAAGTCTTTTTGCTTCATATCATTTTAGTGCCGAACTACTTTGGGTTGATTCAGGAGGATTTTTTTTTCTTAACACAGATTGATTATATGTAGTTTGTTATACGGTGCACTAATTCTAATTTACCTTCGGTTGTTTATGTTCAGGTTGAATTTGATTGGAACTTTATCCATATTCTTTTTCATTTATATAATGATTGTCACTCTTACGTGAAGAGTTTGTTTTAGAAAATAAACAAAGGGCTTTAGGGTTTTGTTTTCCTCCAGCGTAAGAGTGAATAACTGTTAATTATGGAGAATAAAGAACAAGTTGAGGAAAGGCGTCAACCCAGTTAAGAACCACTGGGATGAGTTTCTTTCATCAACGCTTGCTGCATCGTGGTCTTAGCAACATAAAATGATCTGGTTTTGAGTTTCCATATTTCCTGTGCATGTGATACACAAGGAGAGAGGGATCATATGGGTTCTCCTTTGAGAAAGTGTGGCGAGTATTAATCCTCCTCATAGCAAGATACAAAATGAAAAATATACTTTTCTTTGGGTTTCCTCACCTCTACTTCAGGTAACCTTTTAAACAAGTTGCATCTCTGTTAGCAGAAATGGTAATCATTTCAAGTCTAGAGTTTGTCCAAATTCCATGTCAATCTGCAGGTTGTCAATTTGGACTGTGGTTTTTGACAGTGCTTAGCAGCCGAGTGAGACAAGTACTCAGTAGCTTCTCTATCATTTAGTGGCCTATTGAAATCAATCTTTTAGTTCTCCCATTCCAGCAGTCAGCTAACTCTTCATTTTTAAAGCTAGGCAACTGAATTCTACAGATAACTACCCTCTGAGGAATATTCAAAGCCTATTACTTTTGTGGTGGCTATTTGTTGGTTCCGTTAACAAGTTTGAAGGAGAAACTACTAATTCTCACCTCACCACAAACTTCCAAGGGCTGCTGCTTCTCATTTTCCTATGGTGAACTAGTAGATGTAAATCAATTGTCTCTATCAATTCCACTTAGACGCATTTTAAGAGGGCTAAATTACTTCCACAATGTAACTCCAAAACCTTCATCATCCCTCTCTCCCGTCTCTTAATCAAGAACAGCTGCACGCTATTCCTCTGAGAACTATAATAAATACTAATAATCCATATAACTAACTTTTATAAAATTAATTCATTATTTACTGTCTAATAACCAACATGTTTCGTCTTTGTTTTGTAGGCTTATGATATTGATACACTGACAGAAGAACAGAGGTATGCTATCAAGGACCTTGCTGATCTGGGACTAGTTAAGCTTCAGCAGGTTTGTGGCTAGCCTCTGCTGCTTTTTAAATTGAACATGACCTTTGCTCAAGTTCTTACTTTATTTTAACTTCACCTTTTTTCTTTTTCTTTTTCTGTTGTGCTTTTCGCTGTTAATTTGTCCAGGGTAGAAAAGACAGTTGGTTCATACCTACTAAATTAGCCACGAATCTTTCAATGAGTTTGGCAGATTCTTCTTCGAGGAAACAGGTTAGTGTTTCTAAATTATATTTAAATTTGATATATTTCTCAGAAGTTTCATTTTATTACAGTTAGTTTTTTTAGTGGTTTGTGTGTTTTGTGTGATAGCTTTTTTTTTTCCATAATTATCTTTTAGTTATACATATAGAGTATCCTCAGGTATATGTCTTATCCTCGTTACCTTTTCTGTAATTATTATTTGACAGAAACTTGTTTTTGGTATTAAATAACTCAGTTGTCTTTTTTTCTTTGGTCCTAGTTCGGAGGCTTTATAATTTTTTTTTTGTTCTTAATTTTCTTCCTGTTCTTTATCCAGGGATTTGTTGTCGTGGAGACAAATTTCAGGATGTATGCTTATTCTTCTTCCAAACTACATTGTGAAATATTACGTCTTTTTTCGAGGTATATGTTATCAATTAATGTTATATTACATAATATAACCAATGTTCGAGTTAGCTTTAACTACTGTGAGTTGACCTATTGGGTCAATAAGGACCCATGTAAATAAGACATAACTTATATATGCCAACTACACTAGATTAGTATCTTACGAGTTACCTTGACAACCAAATGTAATAGGGTCAATTAGTTGTTCCGTGAGAATCGTGAGAATAGTTGAAAATGTACAAACTGGCTCAAACACTAATATTTACATCTTACTTTTTCTTCTTGAATGCTAAATATATTTGAATTCCCCACCCCTGCTAGACCCTCTTGAAATTCACATATGCTTGGAGGAAGGAGGGGCAAGCTGAGGGGTAACTTAGTCATTAGCATGCTTCTTGAGGTTGCAAGCAACTAGTGATAGATTCTGTAAGGTCAGTAGGGCCAATTAATCATTGGAATACTGTTACATAATATGTTAATAATAATTCAATAGTTATAGTGTTATACTTGTGTAAATTAGAAATGCTGCTGCTCTTCTTAACTAAATATAATTCTCTTTCACCTTTGTGTTAAATTTTTACAACAAATTTATTTGATTATTTTAAGGTCCGTTTTTTTAATTGTATTCTTACCAGTAGCACTTGTAATAGTTGATTAAATAGGGATATGATTCAAGTTCAACATTCTACATTTTACGTACTGCGTGGTGAATGCAGTAATTTCCTTTCCTGTTGAATTGAACCACGTAGTGAAGCCATCTAACCACACTTATCAACTTTCTATTTGGTTCAAGAATGGTACATAAAACGAAACTGTTCTTCTGCAGGATTGAGTATCAACTTCCAAATCTTATTGTTGGAGCAATAACGAAAGAAAGCTTGTATAATGCTTTTAAGAATGGGATTACGGCACAGCAGGCAAGTTTTCTGCTCGTTCACCCTGACACGTTACTGCTAGTCTTATGAAGTATGCGTACCATTATATTATATTCAAGTTGCCAATGGATTGCAGTAGACCAGTTCTCCTTTGCGCTTCATTAGTTCACAACATCTTGCGTTCGTAGCACTGTTAATTCTTCCTAGCAGTGGAGATTTCTTCCCGACTCTAATTATTATTCCGTACAAGTGCCAAACCCATGTTATCGGCCAGCCACGAAGGACTTCAATTAGCATTGGCTCCTAATCCACAAGAAACAATCTTTCTATTTTTCTTGTGTGCATCTAAATTCTCTCATAAACTTAATGTAAACTCTGAATATCTTTTTGAGTTCAAAAAAATATTAAAACAAACGACAAATGTATTCATTCAATTACATTAAGGACATTACTACAGTTTTCTATGCTGGTTTTCTAATCTCAAATTGCTTGATATCTGACTATTGTTTTGCAGATAGTTACTTTTCTACAGCAGAATGCACATCCTCGTGTTGCAGAGAGAATACCATCAGTCCCAGAAAATGTCACGGATCAGGTATGGGTTGGTTTATTAAATTCTTTGATGTTTGGCAAGCGGCAAGCCAATGGTTTCTTGCCTACAAATCAACCCTTGCTTGGCATGGAAACCAAAAACGTCTATATATGTTATCGTCTGACAATTTTATCAAATCTTTGTACTGTTCCTGATGTTTTCCGTTGCTCCTTACTCCATGACAGATTAGGCTTTGGGAATCGGATCTTAATAGAGTTGATATAACTCCCGCACATTTTTACGACGAATTCCCTTCCAGGGTATGAATTTTGAATATTGCTTCTTTTAACTTTGAAGCTTACTTGTACATTCACCTGAAAAATCACCTGAGAAAGAATTGCTTTGGTATTCCAGGAAGTTTTCGAGGCTGCTTGCGACTATGCACGGGAATGGAATGGGTTGCTATGGGAGGACTCGAAAACCTTGCGACTGGTAGTGAAGGCAGACATACACACACATATGCGGGAACATCTTCGCCGTCAAAAGTAGATCGTGGATTAGATGATACAATACTGCTACCAATATCTGTTTATAACCATGGCCGCTGGTACTTCAGTTTTTGTTGCTTCAGTGGCATGTGCTAAAGATTTACTTCATTCAATGAGCAAGGTGAAGAACGCAGTGAGAGTTCTATGGGAGAAAAGAACATTGTGCCAATGATAAAGAGTTTCTTACTGTGTACGTTTATTTTTCAAATTGGTTCTTACGGAAGTTTTGTTAGGTTGATTTTCCTTGGTCGATTGACTTATGGTATATAACCGCTGAGATGGTTGCAAGGAACAGATGTCAAATGTTTCTATAACTAATGGAATATATGTGTAATGGTTGGTGTCAACCTAAAGTGCACTAGACAAGTAATTTTTTTTAATTAGCTCTTAAGTATAAGTATATGTTGGATTGGGCTGGGGACCTTTAATGTGTAAGACTAACATGATAACCACTACACCACAGCAACTTGACAC

mRNA sequence

TAATTTAAGATGGAGACGACGTGTCGTTCTTCGTCTTCGGTCTTCGGAATGGACGATACGGGAAGCAGGCAGAGAGTCAATCGTCAAACTACGAAGGTTGATTAGCTGTTAATTATTTGATTGATTGATTTCAGAAGATCCAAGACTTCACCATTGGCTATAAATTCTCACTGCGGTCTCACTCCCGAGCTGGAAGCTGCAATTCTTTATAATTCCTGATTCTGTGTATCCGACACTCGAGGGATTCTCCTTTGATTGCTGGAAGTTTTGCAGAACCCTAAAGGACTAGCTACGGAAAGAAGGAAAGCTCAATCCAGAATGCCTCAAGTAAAGATCATAGCGAAGAATTTTATGGACATGGTGGCCTCCTTGCCCGCCATGAAGCTCGATCAACTCTATGAGAATGCCTTCATCTGCGAAGCCATTCTCAGGTCACTTCCACCCCTGGCCAAGAAGTTTGTTTTACAAATGTTATACATTGATGCTCCAGTAACCGCTAAGTCCATGGAGGAGTGGGTGCTCCCAGATGGAGTCTCGAAGTATAAGGTTGCCGTTGATCGATTGATTCAATTGAGAGTATTTATTGAGACTGCGGATAGGAAAAGAGAAACAACCTACAAGCTAAATCCAACGTTCCAAGCTAACCTCCAAAAGCTTTTAATACATGGTGAAGTTCTAGCCAGAGAACCAATGCCTTCTAATATTACCGTGAGGCTTCCAAATTTGGAAGAACTTGAGGCTTATGCTCTGGATCAGTGGGAGTGCTTCTTGCTGCAATTGATAAACTCAGGCCAAGCTGATAAGCCCTCAAATATTAGTTCTTCTGTGATGAAAGTTTTCCAGAAAGGCCTTTTAAGTCAGAGGGATAAAGAAACTCCACGATTAACTGAGAGCGGTTTCCAGTTCTTGTTGATGGAAACAAATGCACAACTTTGGTATATCATCAGAGAATATATATCTAATGCCGAGGAGCGAGATGTTGATCCTGCAGATTTGATTTCTTTTCTGCTGGAGCTTAGTTTTCACGTGACAGGAGAGGCTTATGATATTGATACACTGACAGAAGAACAGAGGTATGCTATCAAGGACCTTGCTGATCTGGGACTAGTTAAGCTTCAGCAGGGTAGAAAAGACAGTTGGTTCATACCTACTAAATTAGCCACGAATCTTTCAATGAGTTTGGCAGATTCTTCTTCGAGGAAACAGGGATTTGTTGTCGTGGAGACAAATTTCAGGATGTATGCTTATTCTTCTTCCAAACTACATTGTGAAATATTACGTCTTTTTTCGAGGATTGAGTATCAACTTCCAAATCTTATTGTTGGAGCAATAACGAAAGAAAGCTTGTATAATGCTTTTAAGAATGGGATTACGGCACAGCAGGCAAGTTTTCTGCTCGTTCACCCTGACACGTTACTGCTAATAGTTACTTTTCTACAGCAGAATGCACATCCTCGTGTTGCAGAGAGAATACCATCAGTCCCAGAAAATGTCACGGATCAGATTAGGCTTTGGGAATCGGATCTTAATAGAGTTGATATAACTCCCGCACATTTTTACGACGAATTCCCTTCCAGGGAAGTTTTCGAGGCTGCTTGCGACTATGCACGGGAATGGAATGGGTTGCTATGGGAGGACTCGAAAACCTTGCGACTGGTAGTGAAGGCAGACATACACACACATATGCGGGAACATCTTCGCCGTCAAAAGTAGATCGTGGATTAGATGATACAATACTGCTACCAATATCTGTTTATAACCATGGCCGCTGGTACTTCAGTTTTTGTTGCTTCAGTGGCATGTGCTAAAGATTTACTTCATTCAATGAGCAAGGTGAAGAACGCAGTGAGAGTTCTATGGGAGAAAAGAACATTGTGCCAATGATAAAGAGTTTCTTACTGTGTACGTTTATTTTTCAAATTGGTTCTTACGGAAGTTTTGTTAGGTTGATTTTCCTTGGTCGATTGACTTATGGTATATAACCGCTGAGATGGTTGCAAGGAACAGATGTCAAATGTTTCTATAACTAATGGAATATATGTGTAATGGTTGGTGTCAACCTAAAGTGCACTAGACAAGTAATTTTTTTTAATTAGCTCTTAAGTATAAGTATATGTTGGATTGGGCTGGGGACCTTTAATGTGTAAGACTAACATGATAACCACTACACCACAGCAACTTGACAC

Coding sequence (CDS)

ATGCCTCAAGTAAAGATCATAGCGAAGAATTTTATGGACATGGTGGCCTCCTTGCCCGCCATGAAGCTCGATCAACTCTATGAGAATGCCTTCATCTGCGAAGCCATTCTCAGGTCACTTCCACCCCTGGCCAAGAAGTTTGTTTTACAAATGTTATACATTGATGCTCCAGTAACCGCTAAGTCCATGGAGGAGTGGGTGCTCCCAGATGGAGTCTCGAAGTATAAGGTTGCCGTTGATCGATTGATTCAATTGAGAGTATTTATTGAGACTGCGGATAGGAAAAGAGAAACAACCTACAAGCTAAATCCAACGTTCCAAGCTAACCTCCAAAAGCTTTTAATACATGGTGAAGTTCTAGCCAGAGAACCAATGCCTTCTAATATTACCGTGAGGCTTCCAAATTTGGAAGAACTTGAGGCTTATGCTCTGGATCAGTGGGAGTGCTTCTTGCTGCAATTGATAAACTCAGGCCAAGCTGATAAGCCCTCAAATATTAGTTCTTCTGTGATGAAAGTTTTCCAGAAAGGCCTTTTAAGTCAGAGGGATAAAGAAACTCCACGATTAACTGAGAGCGGTTTCCAGTTCTTGTTGATGGAAACAAATGCACAACTTTGGTATATCATCAGAGAATATATATCTAATGCCGAGGAGCGAGATGTTGATCCTGCAGATTTGATTTCTTTTCTGCTGGAGCTTAGTTTTCACGTGACAGGAGAGGCTTATGATATTGATACACTGACAGAAGAACAGAGGTATGCTATCAAGGACCTTGCTGATCTGGGACTAGTTAAGCTTCAGCAGGGTAGAAAAGACAGTTGGTTCATACCTACTAAATTAGCCACGAATCTTTCAATGAGTTTGGCAGATTCTTCTTCGAGGAAACAGGGATTTGTTGTCGTGGAGACAAATTTCAGGATGTATGCTTATTCTTCTTCCAAACTACATTGTGAAATATTACGTCTTTTTTCGAGGATTGAGTATCAACTTCCAAATCTTATTGTTGGAGCAATAACGAAAGAAAGCTTGTATAATGCTTTTAAGAATGGGATTACGGCACAGCAGGCAAGTTTTCTGCTCGTTCACCCTGACACGTTACTGCTAATAGTTACTTTTCTACAGCAGAATGCACATCCTCGTGTTGCAGAGAGAATACCATCAGTCCCAGAAAATGTCACGGATCAGATTAGGCTTTGGGAATCGGATCTTAATAGAGTTGATATAACTCCCGCACATTTTTACGACGAATTCCCTTCCAGGGAAGTTTTCGAGGCTGCTTGCGACTATGCACGGGAATGGAATGGGTTGCTATGGGAGGACTCGAAAACCTTGCGACTGGTAGTGAAGGCAGACATACACACACATATGCGGGAACATCTTCGCCGTCAAAAGTAG

Protein sequence

MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDAPVTAKSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYKLNPTFQANLQKLLIHGEVLAREPMPSNITVRLPNLEELEAYALDQWECFLLQLINSGQADKPSNISSSVMKVFQKGLLSQRDKETPRLTESGFQFLLMETNAQLWYIIREYISNAEERDVDPADLISFLLELSFHVTGEAYDIDTLTEEQRYAIKDLADLGLVKLQQGRKDSWFIPTKLATNLSMSLADSSSRKQGFVVVETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAQQASFLLVHPDTLLLIVTFLQQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACDYAREWNGLLWEDSKTLRLVVKADIHTHMREHLRRQK
Homology
[Close]
BLAST of Cp4.1LG10g04990 vs. ExPASy Swiss-Prot
Match: Q680U9 (General transcription and DNA repair factor IIH subunit TFB2 OS=Arabidopsis thaliana OX=3702 GN=TFB2 PE=2 SV=1)

HSP 1 Score: 718.0 bits (1852), Expect = 6.9e-206
Identity = 354/463 (76.46%), Postives = 404/463 (87.26%), Query Frame = 0 

Query: 1   MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDAPVTA 60
           MPQVKIIAKNFMDMVASLPA+KLD+LY N FICEAILRSLPPLAKK+VLQMLYID PV A
Sbjct: 1   MPQVKIIAKNFMDMVASLPAIKLDKLYNNVFICEAILRSLPPLAKKYVLQMLYIDVPVPA 60

Query: 61  KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYKLNPTFQANLQKLLIHGEVL 120
             MEEWVL DG SK++VA+DRLIQLR+F E +DRKR T+Y LNPTFQ NLQK +I G VL
Sbjct: 61  TMMEEWVLADGTSKHRVAIDRLIQLRIFSEISDRKRGTSYSLNPTFQNNLQKHIISGGVL 120

Query: 121 AREPMPSNITVRLPNLEELEAYALDQWECFLLQLINSGQADKPSNISSSVMKVFQKGLLS 180
            REPM S+  ++LP+L+ELE YAL QWECFLLQLINSGQ +K + ISSS+MK+FQ+GLLS
Sbjct: 121 PREPMNSDNAIKLPSLQELETYALKQWECFLLQLINSGQGEKLTGISSSMMKIFQRGLLS 180

Query: 181 QRDKETPRLTESGFQFLLMETNAQLWYIIREYISNAEERDVDPADLISFLLELSFHVTGE 240
           QRDK+ PRLTESGFQFLLM+TNAQLWYIIREYI NAEERDVDPADLISFLLELSFHVTG+
Sbjct: 181 QRDKDGPRLTESGFQFLLMDTNAQLWYIIREYILNAEERDVDPADLISFLLELSFHVTGQ 240

Query: 241 AYDIDTLTEEQRYAIKDLADLGLVKLQQGRKDSWFIPTKLATNLSMSLADSSSRKQGFVV 300
           AY+++TLTE Q   +KDLADLGLVKLQQGRKDSWFIPTKLATNLS+SLADSS+RK+GFVV
Sbjct: 241 AYNLNTLTEVQNNTLKDLADLGLVKLQQGRKDSWFIPTKLATNLSVSLADSSARKEGFVV 300

Query: 301 VETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAQQASFLL 360
           +ETNFRMYAYS+SKL CEILRLF+RIEYQLPNLI  AITKESLYNAF NGIT+ Q     
Sbjct: 301 METNFRMYAYSTSKLQCEILRLFARIEYQLPNLIACAITKESLYNAFDNGITSDQ----- 360

Query: 361 VHPDTLLLIVTFLQQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSR 420
                   I+TFLQQN+HPR A+R+PS+PENVTDQIRLWE+DL R+++T AHFYDEFPS+
Sbjct: 361 --------IITFLQQNSHPRCADRVPSIPENVTDQIRLWETDLQRIEMTQAHFYDEFPSK 420

Query: 421 EVFEAACDYAREWNGLLWEDSKTLRLVVKADIHTHMREHLRRQ 464
           +VFEAACD+AREW GLLWEDSK +RLVVK+++H  MRE L  Q
Sbjct: 421 DVFEAACDFAREWRGLLWEDSKRMRLVVKSEVHNQMREFLHTQ 450

[Close]
BLAST of Cp4.1LG10g04990 vs. ExPASy Swiss-Prot
Match: Q92759 (General transcription factor IIH subunit 4 OS=Homo sapiens OX=9606 GN=GTF2H4 PE=1 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 1.1e-65
Identity = 153/466 (32.83%), Postives = 257/466 (55.15%), Query Frame = 0 

Query: 3   QVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDAPVTAKS 62
           +V +  +N  + +  L    LD+LY +   C A+ R LP LAK +V++ML+++ P+   +
Sbjct: 11  RVHLQCRNLQEFLGGLSPGVLDRLYGHPATCLAVFRELPSLAKNWVMRMLFLEQPLPQAA 70

Query: 63  MEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYKLNPTFQANLQ-KLLIHGEVLA 122
           +  WV  +     + +   L  LR++             LNP F+ NL+  LL  G+  +
Sbjct: 71  VALWVKKEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPIFRQNLRIALLGGGKAWS 130

Query: 123 REPMPSNITVRLPNLEELEAYALDQWECFLLQLINSGQADKPSNISSSVMKVFQKGLL-S 182
            +           ++  L+ YA ++WE  L  ++ S  A    +++  +    Q GL+ S
Sbjct: 131 DDTSQLGPDKHARDVPSLDKYAEERWEVVLHFMVGSPSAAVSQDLAQLLS---QAGLMKS 190

Query: 183 QRDKETPRLTESGFQFLLMETNAQLWYIIREYISNAEERDVDPADLISFLLELSFHVTGE 242
               E P +T +GFQFLL++T AQLWY + +Y+  A+ R +D  +++SFL +LSF   G+
Sbjct: 191 TEPGEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQLSFSTLGK 250

Query: 243 AYDIDTLTEEQRYAIKDLADLGLVKLQQGRKDSWFIPTKLATNLS--MSLADSSSRKQGF 302
            Y ++ +++     ++ L + GLV  Q+ RK   + PT+LA NLS  +S A  +  + GF
Sbjct: 251 DYSVEGMSDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTVHQPGF 310

Query: 303 VVVETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAQQASF 362
           +VVETN+R+YAY+ S+L   ++ LFS + Y+ PN++V  +T+ES+  A  +GITAQQ   
Sbjct: 311 IVVETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQ--- 370

Query: 363 LLVHPDTLLLIVTFLQQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFP 422
                     I+ FL+  AHP + ++ P +P  +TDQIRLWE + +R+  T    Y++F 
Sbjct: 371 ----------IIHFLRTRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFL 430

Query: 423 SREVFEAACDYAREWNGLLWEDSKTLRLVVKADIHTHMREHLRRQK 465
           S+  FE    +ARE   L++E+S    +VV    H+ ++   +RQK
Sbjct: 431 SQVDFELLLAHARELGVLVFENSAKRLMVVTPAGHSDVKRFWKRQK 459

[Close]
BLAST of Cp4.1LG10g04990 vs. ExPASy Swiss-Prot
Match: P60027 (General transcription factor IIH subunit 4 OS=Pan troglodytes OX=9598 GN=GTF2H4 PE=3 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 1.1e-65
Identity = 153/466 (32.83%), Postives = 257/466 (55.15%), Query Frame = 0 

Query: 3   QVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDAPVTAKS 62
           +V +  +N  + +  L    LD+LY +   C A+ R LP LAK +V++ML+++ P+   +
Sbjct: 11  RVHLQCRNLQEFLGGLSPGVLDRLYGHPATCLAVFRELPSLAKNWVMRMLFLEQPLPQAA 70

Query: 63  MEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYKLNPTFQANLQ-KLLIHGEVLA 122
           +  WV  +     + +   L  LR++             LNP F+ NL+  LL  G+  +
Sbjct: 71  VALWVKKEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPIFRQNLRIALLGGGKAWS 130

Query: 123 REPMPSNITVRLPNLEELEAYALDQWECFLLQLINSGQADKPSNISSSVMKVFQKGLL-S 182
            +           ++  L+ YA ++WE  L  ++ S  A    +++  +    Q GL+ S
Sbjct: 131 DDTSQLGPDKHARDVPSLDKYAEERWEVVLHFMVGSPSAAVSQDLAQLLS---QAGLMKS 190

Query: 183 QRDKETPRLTESGFQFLLMETNAQLWYIIREYISNAEERDVDPADLISFLLELSFHVTGE 242
               E P +T +GFQFLL++T AQLWY + +Y+  A+ R +D  +++SFL +LSF   G+
Sbjct: 191 TEPGEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQLSFSTLGK 250

Query: 243 AYDIDTLTEEQRYAIKDLADLGLVKLQQGRKDSWFIPTKLATNLS--MSLADSSSRKQGF 302
            Y ++ +++     ++ L + GLV  Q+ RK   + PT+LA NLS  +S A  +  + GF
Sbjct: 251 DYSVEGMSDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTVHQPGF 310

Query: 303 VVVETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAQQASF 362
           +VVETN+R+YAY+ S+L   ++ LFS + Y+ PN++V  +T+ES+  A  +GITAQQ   
Sbjct: 311 IVVETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQ--- 370

Query: 363 LLVHPDTLLLIVTFLQQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFP 422
                     I+ FL+  AHP + ++ P +P  +TDQIRLWE + +R+  T    Y++F 
Sbjct: 371 ----------IIHFLRTRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFL 430

Query: 423 SREVFEAACDYAREWNGLLWEDSKTLRLVVKADIHTHMREHLRRQK 465
           S+  FE    +ARE   L++E+S    +VV    H+ ++   +RQK
Sbjct: 431 SQVDFELLLAHARELGVLVFENSAKRLMVVTPAGHSDVKRFWKRQK 459

[Close]
BLAST of Cp4.1LG10g04990 vs. ExPASy Swiss-Prot
Match: O70422 (General transcription factor IIH subunit 4 OS=Mus musculus OX=10090 GN=Gtf2h4 PE=1 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 2.4e-65
Identity = 152/460 (33.04%), Postives = 254/460 (55.22%), Query Frame = 0 

Query: 9   KNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDAPVTAKSMEEWVL 68
           +N  + +  L    LD+LY +   C A+ R LP LAK +V++ML+++ P+   ++  WV 
Sbjct: 18  RNLQEFLGGLSPGVLDRLYGHPATCLAVFRELPSLAKNWVMRMLFLEQPLPQAAVALWVK 77

Query: 69  PDGVSKYKVAVDRLIQLRVFIETADRKRETTYKLNPTFQANLQ-KLLIHGEVLAREPMPS 128
            +     + +   L  LR++             LNP F+ NL+  LL  G+  + +    
Sbjct: 78  KEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPVFRQNLRIALLGGGKAWSDDTSQL 137

Query: 129 NITVRLPNLEELEAYALDQWECFLLQLINSGQADKPSNISSSVMKVFQKGLL-SQRDKET 188
                  ++  L+ YA ++WE  L  ++ S  A    +++  +    Q GL+ S    E 
Sbjct: 138 GPDKHARDVPSLDKYAEERWEVVLHFMVGSPSAAVSQDLAQLLS---QAGLMKSTEPGEP 197

Query: 189 PRLTESGFQFLLMETNAQLWYIIREYISNAEERDVDPADLISFLLELSFHVTGEAYDIDT 248
           P +T +GFQFLL++T AQLWY + +Y+  A+ R +D  +++SFL +LSF   G+ Y ++ 
Sbjct: 198 PCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQLSFSTLGKDYSVEG 257

Query: 249 LTEEQRYAIKDLADLGLVKLQQGRKDSWFIPTKLATNLS--MSLADSSSRKQGFVVVETN 308
           +++     ++ L + GLV  Q+ RK   + PT+LA NLS  +S A  +  + GF+VVETN
Sbjct: 258 MSDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTVHQPGFIVVETN 317

Query: 309 FRMYAYSSSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAQQASFLLVHPD 368
           +R+YAY+ S+L   ++ LFS + Y+ PN++V  +T+ES+  A  +GITAQQ         
Sbjct: 318 YRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQ--------- 377

Query: 369 TLLLIVTFLQQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFE 428
               I+ FL+  AHP + ++ P +P  +TDQIRLWE + +R+  T    Y++F S+  FE
Sbjct: 378 ----IIHFLRTRAHPVMLKQNPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFE 437

Query: 429 AACDYAREWNGLLWEDSKTLRLVVKADIHTHMREHLRRQK 465
               +ARE   L++E+S    +VV    H+ ++   +RQK
Sbjct: 438 LLLAHARELGVLVFENSAKRLMVVTPAGHSDVKRFWKRQK 460

[Close]
BLAST of Cp4.1LG10g04990 vs. ExPASy Swiss-Prot
Match: Q6CLR2 (General transcription and DNA repair factor IIH subunit TFB2 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 GN=TFB2 PE=3 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 2.3e-60
Identity = 146/500 (29.20%), Postives = 254/500 (50.80%), Query Frame = 0 

Query: 13  DMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDAPVTAKSMEEWVLPDGV 72
           D +  LP     +LYE+   C AI R L P+AK F++ ML+ D  V+ + +++WV PD  
Sbjct: 12  DYLEGLPEQVQSRLYESPATCLAIYRLLSPMAKFFIMSMLFQDHDVSLRDLDKWVKPDAK 71

Query: 73  SKYKVAVDRLIQLRVFIETADRKRETTYKLNPTFQANLQKLLIHGEVLAREPMPSNITVR 132
            + + ++  +  L + IE  + K+    +LNP F+ + + +L  GE+       ++    
Sbjct: 72  YQLQYSIKSMKSLNLIIE-GESKQPLLIRLNPIFKKSFKNVLTGGEINNSFGDVADDDTN 131

Query: 133 LPNLEELEAYALDQWECFLLQLINSGQADKPSNISSSVMKVFQ-KGLLSQRDKETPRLTE 192
             +   L+ Y+ ++WE  L  ++ +   + P      V+ + Q  GL+ + +    ++T 
Sbjct: 132 PVSTATLDQYSAEKWETILHYMVGTPNTNTP---GGKVLDLLQHSGLMEEAEYGELKITN 191

Query: 193 SGFQFLLMETNAQLWYIIREYISNAEERDVDPADLISFLLELSFHVTGEAYDIDTLTEEQ 252
            GFQFLL + NAQ+W ++ +Y+  AE   +DP D+++F+  L     G+AY  D L+  Q
Sbjct: 192 QGFQFLLQDVNAQMWTLLLQYLKMAESLQMDPVDVLNFIFMLGALQLGKAYKCDQLSNTQ 251

Query: 253 RYAIKDLADLGLVKLQQGRKD-SWFIPTKLATNL--------SMSLA------------- 312
           R  ++D+ D GL+   Q + D + F PT+LAT L        S S+A             
Sbjct: 252 RTMLQDMRDYGLI--YQNQSDYAKFYPTRLATLLTSDTKAFRSASVALDSVLNKANETTA 311

Query: 313 --------DSSSRKQ-GFVVVETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIVGAITK 372
                   +++ R Q G +++ETNF++Y+YS+S L   IL LF  ++ +  N++ G +T+
Sbjct: 312 VEGDSGQDETTERTQDGALIIETNFKLYSYSNSPLQIAILSLFVHLKSRFANMVTGQLTR 371

Query: 373 ESLYNAFKNGITAQQASFLLVHPDTLLLIVTFLQQNAHPR------------------VA 432
           ES+ NA  NGITA+Q             I+ +L+ +AHPR                  V 
Sbjct: 372 ESVRNALLNGITAEQ-------------IIAYLETHAHPRMRRLAEENLSKKLELDPTVK 431

Query: 433 ERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACDYAREWNGLLWEDSK 463
           E +  +P  V DQIRLW+ +L+R+     + Y +F S + ++   DYA++   LLW++ K
Sbjct: 432 ETLQVLPPTVVDQIRLWQLELDRIISYDGYLYTDFESYQEYQTVADYAKDIGVLLWQNEK 491

[Close]
BLAST of Cp4.1LG10g04990 vs. NCBI nr
Match: XP_023543805.1 (RNA polymerase II transcription factor B subunit 2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 881 bits (2276), Expect = 0.0
Identity = 451/464 (97.20%), Postives = 451/464 (97.20%), Query Frame = 0 

Query: 1   MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDAPVTA 60
           MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDAPVTA
Sbjct: 1   MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDAPVTA 60

Query: 61  KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYKLNPTFQANLQKLLIHGEVL 120
           KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYKLNPTFQANLQKLLIHGEVL
Sbjct: 61  KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYKLNPTFQANLQKLLIHGEVL 120

Query: 121 AREPMPSNITVRLPNLEELEAYALDQWECFLLQLINSGQADKPSNISSSVMKVFQKGLLS 180
           AREPMPSNITVRLPNLEELEAYALDQWECFLLQLINSGQADKPSNISSSVMKVFQKGLLS
Sbjct: 121 AREPMPSNITVRLPNLEELEAYALDQWECFLLQLINSGQADKPSNISSSVMKVFQKGLLS 180

Query: 181 QRDKETPRLTESGFQFLLMETNAQLWYIIREYISNAEERDVDPADLISFLLELSFHVTGE 240
           QRDKETPRLTESGFQFLLMETNAQLWYIIREYISNAEERDVDPADLISFLLELSFHVTGE
Sbjct: 181 QRDKETPRLTESGFQFLLMETNAQLWYIIREYISNAEERDVDPADLISFLLELSFHVTGE 240

Query: 241 AYDIDTLTEEQRYAIKDLADLGLVKLQQGRKDSWFIPTKLATNLSMSLADSSSRKQGFVV 300
           AYDIDTLTEEQRYAIKDLADLGLVKLQQGRKDSWFIPTKLATNLSMSLADSSSRKQGFVV
Sbjct: 241 AYDIDTLTEEQRYAIKDLADLGLVKLQQGRKDSWFIPTKLATNLSMSLADSSSRKQGFVV 300

Query: 301 VETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAQQASFLL 360
           VETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAQQ     
Sbjct: 301 VETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAQQ----- 360

Query: 361 VHPDTLLLIVTFLQQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSR 420
                   IVTFLQQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSR
Sbjct: 361 --------IVTFLQQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSR 420

Query: 421 EVFEAACDYAREWNGLLWEDSKTLRLVVKADIHTHMREHLRRQK 464
           EVFEAACDYAREWNGLLWEDSKTLRLVVKADIHTHMREHLRRQK
Sbjct: 421 EVFEAACDYAREWNGLLWEDSKTLRLVVKADIHTHMREHLRRQK 451

[Close]
BLAST of Cp4.1LG10g04990 vs. NCBI nr
Match: KAG6604444.1 (General transcription and DNA repair factor IIH subunit TFB2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 881 bits (2276), Expect = 0.0
Identity = 451/464 (97.20%), Postives = 451/464 (97.20%), Query Frame = 0 

Query: 1   MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDAPVTA 60
           MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDAPVTA
Sbjct: 32  MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDAPVTA 91

Query: 61  KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYKLNPTFQANLQKLLIHGEVL 120
           KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYKLNPTFQANLQKLLIHGEVL
Sbjct: 92  KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYKLNPTFQANLQKLLIHGEVL 151

Query: 121 AREPMPSNITVRLPNLEELEAYALDQWECFLLQLINSGQADKPSNISSSVMKVFQKGLLS 180
           AREPMPSNITVRLPNLEELEAYALDQWECFLLQLINSGQADKPSNISSSVMKVFQKGLLS
Sbjct: 152 AREPMPSNITVRLPNLEELEAYALDQWECFLLQLINSGQADKPSNISSSVMKVFQKGLLS 211

Query: 181 QRDKETPRLTESGFQFLLMETNAQLWYIIREYISNAEERDVDPADLISFLLELSFHVTGE 240
           QRDKETPRLTESGFQFLLMETNAQLWYIIREYISNAEERDVDPADLISFLLELSFHVTGE
Sbjct: 212 QRDKETPRLTESGFQFLLMETNAQLWYIIREYISNAEERDVDPADLISFLLELSFHVTGE 271

Query: 241 AYDIDTLTEEQRYAIKDLADLGLVKLQQGRKDSWFIPTKLATNLSMSLADSSSRKQGFVV 300
           AYDIDTLTEEQRYAIKDLADLGLVKLQQGRKDSWFIPTKLATNLSMSLADSSSRKQGFVV
Sbjct: 272 AYDIDTLTEEQRYAIKDLADLGLVKLQQGRKDSWFIPTKLATNLSMSLADSSSRKQGFVV 331

Query: 301 VETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAQQASFLL 360
           VETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAQQ     
Sbjct: 332 VETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAQQ----- 391

Query: 361 VHPDTLLLIVTFLQQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSR 420
                   IVTFLQQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSR
Sbjct: 392 --------IVTFLQQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSR 451

Query: 421 EVFEAACDYAREWNGLLWEDSKTLRLVVKADIHTHMREHLRRQK 464
           EVFEAACDYAREWNGLLWEDSKTLRLVVKADIHTHMREHLRRQK
Sbjct: 452 EVFEAACDYAREWNGLLWEDSKTLRLVVKADIHTHMREHLRRQK 482

[Close]
BLAST of Cp4.1LG10g04990 vs. NCBI nr
Match: XP_022977542.1 (RNA polymerase II transcription factor B subunit 2 [Cucurbita maxima])

HSP 1 Score: 878 bits (2269), Expect = 0.0
Identity = 450/464 (96.98%), Postives = 450/464 (96.98%), Query Frame = 0 

Query: 1   MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDAPVTA 60
           MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDAPVTA
Sbjct: 1   MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDAPVTA 60

Query: 61  KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYKLNPTFQANLQKLLIHGEVL 120
           KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYKLNPTFQANLQKLLIHGEVL
Sbjct: 61  KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYKLNPTFQANLQKLLIHGEVL 120

Query: 121 AREPMPSNITVRLPNLEELEAYALDQWECFLLQLINSGQADKPSNISSSVMKVFQKGLLS 180
           AREPMPSNITVRLPNLEELEAYALDQWECFLLQLINSGQADKPSNISSSVMKVFQKGLLS
Sbjct: 121 AREPMPSNITVRLPNLEELEAYALDQWECFLLQLINSGQADKPSNISSSVMKVFQKGLLS 180

Query: 181 QRDKETPRLTESGFQFLLMETNAQLWYIIREYISNAEERDVDPADLISFLLELSFHVTGE 240
           QRDKETPRLTESGFQFLLMETNAQLWYIIREYISNAEER VDPADLISFLLELSFHVTGE
Sbjct: 181 QRDKETPRLTESGFQFLLMETNAQLWYIIREYISNAEERGVDPADLISFLLELSFHVTGE 240

Query: 241 AYDIDTLTEEQRYAIKDLADLGLVKLQQGRKDSWFIPTKLATNLSMSLADSSSRKQGFVV 300
           AYDIDTLTEEQRYAIKDLADLGLVKLQQGRKDSWFIPTKLATNLSMSLADSSSRKQGFVV
Sbjct: 241 AYDIDTLTEEQRYAIKDLADLGLVKLQQGRKDSWFIPTKLATNLSMSLADSSSRKQGFVV 300

Query: 301 VETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAQQASFLL 360
           VETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAQQ     
Sbjct: 301 VETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAQQ----- 360

Query: 361 VHPDTLLLIVTFLQQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSR 420
                   IVTFLQQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSR
Sbjct: 361 --------IVTFLQQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSR 420

Query: 421 EVFEAACDYAREWNGLLWEDSKTLRLVVKADIHTHMREHLRRQK 464
           EVFEAACDYAREWNGLLWEDSKTLRLVVKADIHTHMREHLRRQK
Sbjct: 421 EVFEAACDYAREWNGLLWEDSKTLRLVVKADIHTHMREHLRRQK 451

[Close]
BLAST of Cp4.1LG10g04990 vs. NCBI nr
Match: XP_022925808.1 (RNA polymerase II transcription factor B subunit 2 [Cucurbita moschata])

HSP 1 Score: 875 bits (2261), Expect = 0.0
Identity = 449/464 (96.77%), Postives = 449/464 (96.77%), Query Frame = 0 

Query: 1   MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDAPVTA 60
           MPQVKIIAKNFMDMVASLPAMKLDQLY NAFICEAILRSLPPLAKKFVLQMLYIDAPVTA
Sbjct: 1   MPQVKIIAKNFMDMVASLPAMKLDQLYGNAFICEAILRSLPPLAKKFVLQMLYIDAPVTA 60

Query: 61  KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYKLNPTFQANLQKLLIHGEVL 120
           KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYKLNPTFQANLQKLLI GEVL
Sbjct: 61  KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYKLNPTFQANLQKLLIQGEVL 120

Query: 121 AREPMPSNITVRLPNLEELEAYALDQWECFLLQLINSGQADKPSNISSSVMKVFQKGLLS 180
           AREPMPSNITVRLPNLEELEAYALDQWECFLLQLINSGQADKPSNISSSVMKVFQKGLLS
Sbjct: 121 AREPMPSNITVRLPNLEELEAYALDQWECFLLQLINSGQADKPSNISSSVMKVFQKGLLS 180

Query: 181 QRDKETPRLTESGFQFLLMETNAQLWYIIREYISNAEERDVDPADLISFLLELSFHVTGE 240
           QRDKETPRLTESGFQFLLMETNAQLWYIIREYISNAEERDVDPADLISFLLELSFHVTGE
Sbjct: 181 QRDKETPRLTESGFQFLLMETNAQLWYIIREYISNAEERDVDPADLISFLLELSFHVTGE 240

Query: 241 AYDIDTLTEEQRYAIKDLADLGLVKLQQGRKDSWFIPTKLATNLSMSLADSSSRKQGFVV 300
           AYDIDTLTEEQRYAIKDLADLGLVKLQQGRKDSWFIPTKLATNLSMSLADSSSRKQGFVV
Sbjct: 241 AYDIDTLTEEQRYAIKDLADLGLVKLQQGRKDSWFIPTKLATNLSMSLADSSSRKQGFVV 300

Query: 301 VETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAQQASFLL 360
           VETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAQQ     
Sbjct: 301 VETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAQQ----- 360

Query: 361 VHPDTLLLIVTFLQQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSR 420
                   IVTFLQQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSR
Sbjct: 361 --------IVTFLQQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSR 420

Query: 421 EVFEAACDYAREWNGLLWEDSKTLRLVVKADIHTHMREHLRRQK 464
           EVFEAACDYAREWNGLLWEDSKTLRLVVKADIHTHMREHLRRQK
Sbjct: 421 EVFEAACDYAREWNGLLWEDSKTLRLVVKADIHTHMREHLRRQK 451

[Close]
BLAST of Cp4.1LG10g04990 vs. NCBI nr
Match: XP_004134713.1 (general transcription and DNA repair factor IIH subunit TFB2 isoform X1 [Cucumis sativus] >KGN49219.1 hypothetical protein Csa_003950 [Cucumis sativus])

HSP 1 Score: 856 bits (2212), Expect = 2.07e-312
Identity = 436/464 (93.97%), Postives = 446/464 (96.12%), Query Frame = 0 

Query: 1   MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDAPVTA 60
           MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYID PV+A
Sbjct: 1   MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDGPVSA 60

Query: 61  KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYKLNPTFQANLQKLLIHGEVL 120
           KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTY+LNPTFQANLQKLLIHGEVL
Sbjct: 61  KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYRLNPTFQANLQKLLIHGEVL 120

Query: 121 AREPMPSNITVRLPNLEELEAYALDQWECFLLQLINSGQADKPSNISSSVMKVFQKGLLS 180
           AREPMPSNITVRLP+LE+LEAYALDQWECFLLQLINSGQA+KPSNISSSVMKVFQKGLLS
Sbjct: 121 AREPMPSNITVRLPSLEDLEAYALDQWECFLLQLINSGQAEKPSNISSSVMKVFQKGLLS 180

Query: 181 QRDKETPRLTESGFQFLLMETNAQLWYIIREYISNAEERDVDPADLISFLLELSFHVTGE 240
           QRDKE PRLTESGFQFLLMETNAQLWYIIREYISNAEER VDPADLISFLLELSFHVTGE
Sbjct: 181 QRDKEAPRLTESGFQFLLMETNAQLWYIIREYISNAEERGVDPADLISFLLELSFHVTGE 240

Query: 241 AYDIDTLTEEQRYAIKDLADLGLVKLQQGRKDSWFIPTKLATNLSMSLADSSSRKQGFVV 300
           AYDIDTL++EQRYAIKDLADLGLVKLQQGRK+SWFIPTKLATNLSMSLADSSSRK GFVV
Sbjct: 241 AYDIDTLSDEQRYAIKDLADLGLVKLQQGRKESWFIPTKLATNLSMSLADSSSRKLGFVV 300

Query: 301 VETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAQQASFLL 360
           VETNFRMYAYS+SKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITA+Q     
Sbjct: 301 VETNFRMYAYSTSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAEQ----- 360

Query: 361 VHPDTLLLIVTFLQQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSR 420
                   IVTFLQQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSR
Sbjct: 361 --------IVTFLQQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSR 420

Query: 421 EVFEAACDYAREWNGLLWEDSKTLRLVVKADIHTHMREHLRRQK 464
           EVFEAACDYAREWNGLLWEDSK LRLVVKADIHTHMREHLRRQK
Sbjct: 421 EVFEAACDYAREWNGLLWEDSKNLRLVVKADIHTHMREHLRRQK 451

[Close]
BLAST of Cp4.1LG10g04990 vs. ExPASy TrEMBL
Match: A0A6J1IIT5 (RNA polymerase II transcription factor B subunit 2 OS=Cucurbita maxima OX=3661 GN=LOC111477843 PE=3 SV=1)

HSP 1 Score: 878 bits (2269), Expect = 0.0
Identity = 450/464 (96.98%), Postives = 450/464 (96.98%), Query Frame = 0 

Query: 1   MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDAPVTA 60
           MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDAPVTA
Sbjct: 1   MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDAPVTA 60

Query: 61  KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYKLNPTFQANLQKLLIHGEVL 120
           KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYKLNPTFQANLQKLLIHGEVL
Sbjct: 61  KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYKLNPTFQANLQKLLIHGEVL 120

Query: 121 AREPMPSNITVRLPNLEELEAYALDQWECFLLQLINSGQADKPSNISSSVMKVFQKGLLS 180
           AREPMPSNITVRLPNLEELEAYALDQWECFLLQLINSGQADKPSNISSSVMKVFQKGLLS
Sbjct: 121 AREPMPSNITVRLPNLEELEAYALDQWECFLLQLINSGQADKPSNISSSVMKVFQKGLLS 180

Query: 181 QRDKETPRLTESGFQFLLMETNAQLWYIIREYISNAEERDVDPADLISFLLELSFHVTGE 240
           QRDKETPRLTESGFQFLLMETNAQLWYIIREYISNAEER VDPADLISFLLELSFHVTGE
Sbjct: 181 QRDKETPRLTESGFQFLLMETNAQLWYIIREYISNAEERGVDPADLISFLLELSFHVTGE 240

Query: 241 AYDIDTLTEEQRYAIKDLADLGLVKLQQGRKDSWFIPTKLATNLSMSLADSSSRKQGFVV 300
           AYDIDTLTEEQRYAIKDLADLGLVKLQQGRKDSWFIPTKLATNLSMSLADSSSRKQGFVV
Sbjct: 241 AYDIDTLTEEQRYAIKDLADLGLVKLQQGRKDSWFIPTKLATNLSMSLADSSSRKQGFVV 300

Query: 301 VETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAQQASFLL 360
           VETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAQQ     
Sbjct: 301 VETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAQQ----- 360

Query: 361 VHPDTLLLIVTFLQQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSR 420
                   IVTFLQQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSR
Sbjct: 361 --------IVTFLQQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSR 420

Query: 421 EVFEAACDYAREWNGLLWEDSKTLRLVVKADIHTHMREHLRRQK 464
           EVFEAACDYAREWNGLLWEDSKTLRLVVKADIHTHMREHLRRQK
Sbjct: 421 EVFEAACDYAREWNGLLWEDSKTLRLVVKADIHTHMREHLRRQK 451

[Close]
BLAST of Cp4.1LG10g04990 vs. ExPASy TrEMBL
Match: A0A6J1EGA7 (RNA polymerase II transcription factor B subunit 2 OS=Cucurbita moschata OX=3662 GN=LOC111433104 PE=3 SV=1)

HSP 1 Score: 875 bits (2261), Expect = 0.0
Identity = 449/464 (96.77%), Postives = 449/464 (96.77%), Query Frame = 0 

Query: 1   MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDAPVTA 60
           MPQVKIIAKNFMDMVASLPAMKLDQLY NAFICEAILRSLPPLAKKFVLQMLYIDAPVTA
Sbjct: 1   MPQVKIIAKNFMDMVASLPAMKLDQLYGNAFICEAILRSLPPLAKKFVLQMLYIDAPVTA 60

Query: 61  KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYKLNPTFQANLQKLLIHGEVL 120
           KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYKLNPTFQANLQKLLI GEVL
Sbjct: 61  KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYKLNPTFQANLQKLLIQGEVL 120

Query: 121 AREPMPSNITVRLPNLEELEAYALDQWECFLLQLINSGQADKPSNISSSVMKVFQKGLLS 180
           AREPMPSNITVRLPNLEELEAYALDQWECFLLQLINSGQADKPSNISSSVMKVFQKGLLS
Sbjct: 121 AREPMPSNITVRLPNLEELEAYALDQWECFLLQLINSGQADKPSNISSSVMKVFQKGLLS 180

Query: 181 QRDKETPRLTESGFQFLLMETNAQLWYIIREYISNAEERDVDPADLISFLLELSFHVTGE 240
           QRDKETPRLTESGFQFLLMETNAQLWYIIREYISNAEERDVDPADLISFLLELSFHVTGE
Sbjct: 181 QRDKETPRLTESGFQFLLMETNAQLWYIIREYISNAEERDVDPADLISFLLELSFHVTGE 240

Query: 241 AYDIDTLTEEQRYAIKDLADLGLVKLQQGRKDSWFIPTKLATNLSMSLADSSSRKQGFVV 300
           AYDIDTLTEEQRYAIKDLADLGLVKLQQGRKDSWFIPTKLATNLSMSLADSSSRKQGFVV
Sbjct: 241 AYDIDTLTEEQRYAIKDLADLGLVKLQQGRKDSWFIPTKLATNLSMSLADSSSRKQGFVV 300

Query: 301 VETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAQQASFLL 360
           VETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAQQ     
Sbjct: 301 VETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAQQ----- 360

Query: 361 VHPDTLLLIVTFLQQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSR 420
                   IVTFLQQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSR
Sbjct: 361 --------IVTFLQQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSR 420

Query: 421 EVFEAACDYAREWNGLLWEDSKTLRLVVKADIHTHMREHLRRQK 464
           EVFEAACDYAREWNGLLWEDSKTLRLVVKADIHTHMREHLRRQK
Sbjct: 421 EVFEAACDYAREWNGLLWEDSKTLRLVVKADIHTHMREHLRRQK 451

[Close]
BLAST of Cp4.1LG10g04990 vs. ExPASy TrEMBL
Match: A0A0A0KK55 (RNA polymerase II transcription factor B subunit 2 OS=Cucumis sativus OX=3659 GN=Csa_6G517270 PE=3 SV=1)

HSP 1 Score: 856 bits (2212), Expect = 1.00e-312
Identity = 436/464 (93.97%), Postives = 446/464 (96.12%), Query Frame = 0 

Query: 1   MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDAPVTA 60
           MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYID PV+A
Sbjct: 1   MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDGPVSA 60

Query: 61  KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYKLNPTFQANLQKLLIHGEVL 120
           KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTY+LNPTFQANLQKLLIHGEVL
Sbjct: 61  KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYRLNPTFQANLQKLLIHGEVL 120

Query: 121 AREPMPSNITVRLPNLEELEAYALDQWECFLLQLINSGQADKPSNISSSVMKVFQKGLLS 180
           AREPMPSNITVRLP+LE+LEAYALDQWECFLLQLINSGQA+KPSNISSSVMKVFQKGLLS
Sbjct: 121 AREPMPSNITVRLPSLEDLEAYALDQWECFLLQLINSGQAEKPSNISSSVMKVFQKGLLS 180

Query: 181 QRDKETPRLTESGFQFLLMETNAQLWYIIREYISNAEERDVDPADLISFLLELSFHVTGE 240
           QRDKE PRLTESGFQFLLMETNAQLWYIIREYISNAEER VDPADLISFLLELSFHVTGE
Sbjct: 181 QRDKEAPRLTESGFQFLLMETNAQLWYIIREYISNAEERGVDPADLISFLLELSFHVTGE 240

Query: 241 AYDIDTLTEEQRYAIKDLADLGLVKLQQGRKDSWFIPTKLATNLSMSLADSSSRKQGFVV 300
           AYDIDTL++EQRYAIKDLADLGLVKLQQGRK+SWFIPTKLATNLSMSLADSSSRK GFVV
Sbjct: 241 AYDIDTLSDEQRYAIKDLADLGLVKLQQGRKESWFIPTKLATNLSMSLADSSSRKLGFVV 300

Query: 301 VETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAQQASFLL 360
           VETNFRMYAYS+SKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITA+Q     
Sbjct: 301 VETNFRMYAYSTSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAEQ----- 360

Query: 361 VHPDTLLLIVTFLQQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSR 420
                   IVTFLQQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSR
Sbjct: 361 --------IVTFLQQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSR 420

Query: 421 EVFEAACDYAREWNGLLWEDSKTLRLVVKADIHTHMREHLRRQK 464
           EVFEAACDYAREWNGLLWEDSK LRLVVKADIHTHMREHLRRQK
Sbjct: 421 EVFEAACDYAREWNGLLWEDSKNLRLVVKADIHTHMREHLRRQK 451

[Close]
BLAST of Cp4.1LG10g04990 vs. ExPASy TrEMBL
Match: A0A6J1CK16 (RNA polymerase II transcription factor B subunit 2 OS=Momordica charantia OX=3673 GN=LOC111012326 PE=3 SV=1)

HSP 1 Score: 832 bits (2150), Expect = 1.27e-302
Identity = 433/504 (85.91%), Postives = 445/504 (88.29%), Query Frame = 0 

Query: 1   MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDAPVTA 60
           MPQVKIIAKNFMDMVASLPAMKLD LYENAFICEAILRSLPPLAKKFVLQMLYI+APV A
Sbjct: 1   MPQVKIIAKNFMDMVASLPAMKLDNLYENAFICEAILRSLPPLAKKFVLQMLYIEAPVAA 60

Query: 61  KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYKLNPTFQANLQKLLIHGEVL 120
           KSMEEWVL DGVSKYKVA+DRLIQLRVFIETADRKRETTY+LNPTFQANLQKLLI+GEVL
Sbjct: 61  KSMEEWVLSDGVSKYKVALDRLIQLRVFIETADRKRETTYRLNPTFQANLQKLLIYGEVL 120

Query: 121 AREPMPSNITVRLPNLEELEAYALDQWECFLLQLINSGQADKPSNISSSVMKVFQKGLLS 180
           AREPMPSNITVRLP+LE+LEAYALDQWECFLLQLINSGQA+KPSNISSSVMKVFQKGLLS
Sbjct: 121 AREPMPSNITVRLPSLEDLEAYALDQWECFLLQLINSGQAEKPSNISSSVMKVFQKGLLS 180

Query: 181 QRDKETPRLTESGFQFLLMETNAQLWYIIREYISNAEERDVDPADLISFLLELSFHVTGE 240
           QRDKE PRLTESGFQFLLMETNAQLWYIIREYISN+EER VDPADLISFLLELSFHVTGE
Sbjct: 181 QRDKEAPRLTESGFQFLLMETNAQLWYIIREYISNSEERGVDPADLISFLLELSFHVTGE 240

Query: 241 ----------------------------------------AYDIDTLTEEQRYAIKDLAD 300
                                                   AYDIDTLTEEQRYAIKDLAD
Sbjct: 241 LQWLFGDADLLLRFVCLFRGALFFIVLSGFLYFWEFISFLAYDIDTLTEEQRYAIKDLAD 300

Query: 301 LGLVKLQQGRKDSWFIPTKLATNLSMSLADSSSRKQGFVVVETNFRMYAYSSSKLHCEIL 360
           LGLVKLQQGRKDSWFIPTKLATNLSMSLADSSSRKQGFVVVETNFRMYAYSSS+LHCEIL
Sbjct: 301 LGLVKLQQGRKDSWFIPTKLATNLSMSLADSSSRKQGFVVVETNFRMYAYSSSRLHCEIL 360

Query: 361 RLFSRIEYQLPNLIVGAITKESLYNAFKNGITAQQASFLLVHPDTLLLIVTFLQQNAHPR 420
           RLFSRIEYQLPNLIVGAITKESLYNAFKNGITA+Q             IVTFLQQNAHPR
Sbjct: 361 RLFSRIEYQLPNLIVGAITKESLYNAFKNGITAEQ-------------IVTFLQQNAHPR 420

Query: 421 VAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACDYAREWNGLLWED 464
           VAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACDYAREWNGLLWED
Sbjct: 421 VAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACDYAREWNGLLWED 480

[Close]
BLAST of Cp4.1LG10g04990 vs. ExPASy TrEMBL
Match: A0A5A7UBE2 (RNA polymerase II transcription factor B subunit 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold120G003070 PE=3 SV=1)

HSP 1 Score: 812 bits (2098), Expect = 4.30e-293
Identity = 421/471 (89.38%), Postives = 430/471 (91.30%), Query Frame = 0 

Query: 1   MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDAPVTA 60
           MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDAPV+A
Sbjct: 1   MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDAPVSA 60

Query: 61  KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYKLNPTFQANLQKLLIHGEVL 120
           KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTY+LNPTFQANLQKLLIHGEVL
Sbjct: 61  KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYRLNPTFQANLQKLLIHGEVL 120

Query: 121 AREPMPSNITVRLPNLEELEAYALDQWECFLLQLINSGQADKPSNISSSVMKVFQKGLLS 180
           AREPMPSNITVRLP+LE+LEAYALDQWECFLLQLINSGQA+KPSNISSSVMKVFQKGLLS
Sbjct: 121 AREPMPSNITVRLPSLEDLEAYALDQWECFLLQLINSGQAEKPSNISSSVMKVFQKGLLS 180

Query: 181 QR-------------------------DKETPRLTESGFQFLLMETNAQLWYIIREYISN 240
           QR                         DKE PRLTESGFQFLLMETNAQLWYIIREYISN
Sbjct: 181 QRLKSCSMYSSLYFARYLIKCYVWYSRDKEAPRLTESGFQFLLMETNAQLWYIIREYISN 240

Query: 241 AEERDVDPADLISFLLELSFHVTGEAYDIDTLTEEQRYAIKDLADLGLVKLQQGRKDSWF 300
           AEER VDPADLISFLLELSFHVTGEAYDIDTL++EQRYAIKDLADLGLVKLQQGRK+SWF
Sbjct: 241 AEERGVDPADLISFLLELSFHVTGEAYDIDTLSDEQRYAIKDLADLGLVKLQQGRKESWF 300

Query: 301 IPTKLATNLSMSLADSSSRKQGFVVVETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIV 360
           IPTKLATNLSMSLADSSSRKQGFVVVETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIV
Sbjct: 301 IPTKLATNLSMSLADSSSRKQGFVVVETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIV 360

Query: 361 GAITKESLYNAFKNGITAQQASFLLVHPDTLLLIVTFLQQNAHPRVAERIPSVPENVTDQ 420
           GAITKESLYNAFKNGITA+Q             IVTFLQQNAHPRVAERIPSVPENVTDQ
Sbjct: 361 GAITKESLYNAFKNGITAEQ-------------IVTFLQQNAHPRVAERIPSVPENVTDQ 420

Query: 421 IRLWESDLNRVDITPAHFYDEFPSREVFEAACDYAREWNGLLWEDSKTLRL 446
           IRLWESDLNRVDITPAHFYDEFPSREVFEAACDYAREWNGLLWEDSK LRL
Sbjct: 421 IRLWESDLNRVDITPAHFYDEFPSREVFEAACDYAREWNGLLWEDSKNLRL 458

[Close]
BLAST of Cp4.1LG10g04990 vs. TAIR 10
Match: AT4G17020.2 (transcription factor-related )

HSP 1 Score: 718.0 bits (1852), Expect = 4.9e-207
Identity = 354/463 (76.46%), Postives = 404/463 (87.26%), Query Frame = 0 

Query: 1   MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDAPVTA 60
           MPQVKIIAKNFMDMVASLPA+KLD+LY N FICEAILRSLPPLAKK+VLQMLYID PV A
Sbjct: 1   MPQVKIIAKNFMDMVASLPAIKLDKLYNNVFICEAILRSLPPLAKKYVLQMLYIDVPVPA 60

Query: 61  KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYKLNPTFQANLQKLLIHGEVL 120
             MEEWVL DG SK++VA+DRLIQLR+F E +DRKR T+Y LNPTFQ NLQK +I G VL
Sbjct: 61  TMMEEWVLADGTSKHRVAIDRLIQLRIFSEISDRKRGTSYSLNPTFQNNLQKHIISGGVL 120

Query: 121 AREPMPSNITVRLPNLEELEAYALDQWECFLLQLINSGQADKPSNISSSVMKVFQKGLLS 180
            REPM S+  ++LP+L+ELE YAL QWECFLLQLINSGQ +K + ISSS+MK+FQ+GLLS
Sbjct: 121 PREPMNSDNAIKLPSLQELETYALKQWECFLLQLINSGQGEKLTGISSSMMKIFQRGLLS 180

Query: 181 QRDKETPRLTESGFQFLLMETNAQLWYIIREYISNAEERDVDPADLISFLLELSFHVTGE 240
           QRDK+ PRLTESGFQFLLM+TNAQLWYIIREYI NAEERDVDPADLISFLLELSFHVTG+
Sbjct: 181 QRDKDGPRLTESGFQFLLMDTNAQLWYIIREYILNAEERDVDPADLISFLLELSFHVTGQ 240

Query: 241 AYDIDTLTEEQRYAIKDLADLGLVKLQQGRKDSWFIPTKLATNLSMSLADSSSRKQGFVV 300
           AY+++TLTE Q   +KDLADLGLVKLQQGRKDSWFIPTKLATNLS+SLADSS+RK+GFVV
Sbjct: 241 AYNLNTLTEVQNNTLKDLADLGLVKLQQGRKDSWFIPTKLATNLSVSLADSSARKEGFVV 300

Query: 301 VETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAQQASFLL 360
           +ETNFRMYAYS+SKL CEILRLF+RIEYQLPNLI  AITKESLYNAF NGIT+ Q     
Sbjct: 301 METNFRMYAYSTSKLQCEILRLFARIEYQLPNLIACAITKESLYNAFDNGITSDQ----- 360

Query: 361 VHPDTLLLIVTFLQQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSR 420
                   I+TFLQQN+HPR A+R+PS+PENVTDQIRLWE+DL R+++T AHFYDEFPS+
Sbjct: 361 --------IITFLQQNSHPRCADRVPSIPENVTDQIRLWETDLQRIEMTQAHFYDEFPSK 420

Query: 421 EVFEAACDYAREWNGLLWEDSKTLRLVVKADIHTHMREHLRRQ 464
           +VFEAACD+AREW GLLWEDSK +RLVVK+++H  MRE L  Q
Sbjct: 421 DVFEAACDFAREWRGLLWEDSKRMRLVVKSEVHNQMREFLHTQ 450

[Close]
BLAST of Cp4.1LG10g04990 vs. TAIR 10
Match: AT4G17020.1 (transcription factor-related )

HSP 1 Score: 718.0 bits (1852), Expect = 4.9e-207
Identity = 354/463 (76.46%), Postives = 404/463 (87.26%), Query Frame = 0 

Query: 1   MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDAPVTA 60
           MPQVKIIAKNFMDMVASLPA+KLD+LY N FICEAILRSLPPLAKK+VLQMLYID PV A
Sbjct: 1   MPQVKIIAKNFMDMVASLPAIKLDKLYNNVFICEAILRSLPPLAKKYVLQMLYIDVPVPA 60

Query: 61  KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYKLNPTFQANLQKLLIHGEVL 120
             MEEWVL DG SK++VA+DRLIQLR+F E +DRKR T+Y LNPTFQ NLQK +I G VL
Sbjct: 61  TMMEEWVLADGTSKHRVAIDRLIQLRIFSEISDRKRGTSYSLNPTFQNNLQKHIISGGVL 120

Query: 121 AREPMPSNITVRLPNLEELEAYALDQWECFLLQLINSGQADKPSNISSSVMKVFQKGLLS 180
            REPM S+  ++LP+L+ELE YAL QWECFLLQLINSGQ +K + ISSS+MK+FQ+GLLS
Sbjct: 121 PREPMNSDNAIKLPSLQELETYALKQWECFLLQLINSGQGEKLTGISSSMMKIFQRGLLS 180

Query: 181 QRDKETPRLTESGFQFLLMETNAQLWYIIREYISNAEERDVDPADLISFLLELSFHVTGE 240
           QRDK+ PRLTESGFQFLLM+TNAQLWYIIREYI NAEERDVDPADLISFLLELSFHVTG+
Sbjct: 181 QRDKDGPRLTESGFQFLLMDTNAQLWYIIREYILNAEERDVDPADLISFLLELSFHVTGQ 240

Query: 241 AYDIDTLTEEQRYAIKDLADLGLVKLQQGRKDSWFIPTKLATNLSMSLADSSSRKQGFVV 300
           AY+++TLTE Q   +KDLADLGLVKLQQGRKDSWFIPTKLATNLS+SLADSS+RK+GFVV
Sbjct: 241 AYNLNTLTEVQNNTLKDLADLGLVKLQQGRKDSWFIPTKLATNLSVSLADSSARKEGFVV 300

Query: 301 VETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAQQASFLL 360
           +ETNFRMYAYS+SKL CEILRLF+RIEYQLPNLI  AITKESLYNAF NGIT+ Q     
Sbjct: 301 METNFRMYAYSTSKLQCEILRLFARIEYQLPNLIACAITKESLYNAFDNGITSDQ----- 360

Query: 361 VHPDTLLLIVTFLQQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSR 420
                   I+TFLQQN+HPR A+R+PS+PENVTDQIRLWE+DL R+++T AHFYDEFPS+
Sbjct: 361 --------IITFLQQNSHPRCADRVPSIPENVTDQIRLWETDLQRIEMTQAHFYDEFPSK 420

Query: 421 EVFEAACDYAREWNGLLWEDSKTLRLVVKADIHTHMREHLRRQ 464
           +VFEAACD+AREW GLLWEDSK +RLVVK+++H  MRE L  Q
Sbjct: 421 DVFEAACDFAREWRGLLWEDSKRMRLVVKSEVHNQMREFLHTQ 450

[Close]
BLAST of Cp4.1LG10g04990 vs. TAIR 10
Match: AT4G17020.3 (transcription factor-related )

HSP 1 Score: 718.0 bits (1852), Expect = 4.9e-207
Identity = 354/463 (76.46%), Postives = 404/463 (87.26%), Query Frame = 0 

Query: 1   MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDAPVTA 60
           MPQVKIIAKNFMDMVASLPA+KLD+LY N FICEAILRSLPPLAKK+VLQMLYID PV A
Sbjct: 1   MPQVKIIAKNFMDMVASLPAIKLDKLYNNVFICEAILRSLPPLAKKYVLQMLYIDVPVPA 60

Query: 61  KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYKLNPTFQANLQKLLIHGEVL 120
             MEEWVL DG SK++VA+DRLIQLR+F E +DRKR T+Y LNPTFQ NLQK +I G VL
Sbjct: 61  TMMEEWVLADGTSKHRVAIDRLIQLRIFSEISDRKRGTSYSLNPTFQNNLQKHIISGGVL 120

Query: 121 AREPMPSNITVRLPNLEELEAYALDQWECFLLQLINSGQADKPSNISSSVMKVFQKGLLS 180
            REPM S+  ++LP+L+ELE YAL QWECFLLQLINSGQ +K + ISSS+MK+FQ+GLLS
Sbjct: 121 PREPMNSDNAIKLPSLQELETYALKQWECFLLQLINSGQGEKLTGISSSMMKIFQRGLLS 180

Query: 181 QRDKETPRLTESGFQFLLMETNAQLWYIIREYISNAEERDVDPADLISFLLELSFHVTGE 240
           QRDK+ PRLTESGFQFLLM+TNAQLWYIIREYI NAEERDVDPADLISFLLELSFHVTG+
Sbjct: 181 QRDKDGPRLTESGFQFLLMDTNAQLWYIIREYILNAEERDVDPADLISFLLELSFHVTGQ 240

Query: 241 AYDIDTLTEEQRYAIKDLADLGLVKLQQGRKDSWFIPTKLATNLSMSLADSSSRKQGFVV 300
           AY+++TLTE Q   +KDLADLGLVKLQQGRKDSWFIPTKLATNLS+SLADSS+RK+GFVV
Sbjct: 241 AYNLNTLTEVQNNTLKDLADLGLVKLQQGRKDSWFIPTKLATNLSVSLADSSARKEGFVV 300

Query: 301 VETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAQQASFLL 360
           +ETNFRMYAYS+SKL CEILRLF+RIEYQLPNLI  AITKESLYNAF NGIT+ Q     
Sbjct: 301 METNFRMYAYSTSKLQCEILRLFARIEYQLPNLIACAITKESLYNAFDNGITSDQ----- 360

Query: 361 VHPDTLLLIVTFLQQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSR 420
                   I+TFLQQN+HPR A+R+PS+PENVTDQIRLWE+DL R+++T AHFYDEFPS+
Sbjct: 361 --------IITFLQQNSHPRCADRVPSIPENVTDQIRLWETDLQRIEMTQAHFYDEFPSK 420

Query: 421 EVFEAACDYAREWNGLLWEDSKTLRLVVKADIHTHMREHLRRQ 464
           +VFEAACD+AREW GLLWEDSK +RLVVK+++H  MRE L  Q
Sbjct: 421 DVFEAACDFAREWRGLLWEDSKRMRLVVKSEVHNQMREFLHTQ 450

The following BLAST results are available for this feature:
BLAST of Cp4.1LG10g04990 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q680U96.9e-20676.46General transcription and DNA repair factor IIH subunit TFB2 OS=Arabidopsis thal... [more]
Q927591.1e-6532.83General transcription factor IIH subunit 4 OS=Homo sapiens OX=9606 GN=GTF2H4 PE=... [more]
P600271.1e-6532.83General transcription factor IIH subunit 4 OS=Pan troglodytes OX=9598 GN=GTF2H4 ... [more]
O704222.4e-6533.04General transcription factor IIH subunit 4 OS=Mus musculus OX=10090 GN=Gtf2h4 PE... [more]
Q6CLR22.3e-6029.20General transcription and DNA repair factor IIH subunit TFB2 OS=Kluyveromyces la... [more]
BLAST of Cp4.1LG10g04990 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023543805.10.097.20RNA polymerase II transcription factor B subunit 2 [Cucurbita pepo subsp. pepo][more]
KAG6604444.10.097.20General transcription and DNA repair factor IIH subunit TFB2, partial [Cucurbita... [more]
XP_022977542.10.096.98RNA polymerase II transcription factor B subunit 2 [Cucurbita maxima][more]
XP_022925808.10.096.77RNA polymerase II transcription factor B subunit 2 [Cucurbita moschata][more]
XP_004134713.12.07e-31293.97general transcription and DNA repair factor IIH subunit TFB2 isoform X1 [Cucumis... [more]
BLAST of Cp4.1LG10g04990 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1IIT50.096.98RNA polymerase II transcription factor B subunit 2 OS=Cucurbita maxima OX=3661 G... [more]
A0A6J1EGA70.096.77RNA polymerase II transcription factor B subunit 2 OS=Cucurbita moschata OX=3662... [more]
A0A0A0KK551.00e-31293.97RNA polymerase II transcription factor B subunit 2 OS=Cucumis sativus OX=3659 GN... [more]
A0A6J1CK161.27e-30285.91RNA polymerase II transcription factor B subunit 2 OS=Momordica charantia OX=367... [more]
A0A5A7UBE24.30e-29389.38RNA polymerase II transcription factor B subunit 2 OS=Cucumis melo var. makuwa O... [more]
BLAST of Cp4.1LG10g04990 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G17020.24.9e-20776.46transcription factor-related [more]
AT4G17020.14.9e-20776.46transcription factor-related [more]
AT4G17020.34.9e-20776.46transcription factor-related [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004598Transcription factor TFIIH subunit p52/Tfb2TIGRFAMTIGR00625TIGR00625coord: 13..464
e-value: 8.0E-100
score: 332.9
IPR004598Transcription factor TFIIH subunit p52/Tfb2PFAMPF03849Tfb2coord: 14..378
e-value: 1.6E-104
score: 349.7
IPR004598Transcription factor TFIIH subunit p52/Tfb2PANTHERPTHR13152TFIIH, POLYPEPTIDE 4coord: 5..462
NoneNo IPR availableGENE3D3.30.70.2610coord: 390..464
e-value: 2.3E-26
score: 93.9
IPR040662Transcription factor Tfb2, C-terminal domainPFAMPF18307Tfb2_Ccoord: 394..461
e-value: 1.7E-22
score: 79.6

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG10g04990.1Cp4.1LG10g04990.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006289 nucleotide-excision repair
biological_process GO:0070816 phosphorylation of RNA polymerase II C-terminal domain
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0000439 transcription factor TFIIH core complex
cellular_component GO:0005675 transcription factor TFIIH holo complex
molecular_function GO:0001671 ATPase activator activity
molecular_function GO:0003690 double-stranded DNA binding