Cp4.1LG10g03770 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG10g03770
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	RING-H2 finger protein ATL70-like
Location	Cp4.1LG10: 1843894 .. 1844409 (+)
RNA-Seq Expression	Cp4.1LG10g03770
Synteny	Cp4.1LG10g03770

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACAACGGCACGGCGGACAGCGGCGGATTTCTGTCCTCAAACAACATCGGCGGTTTCGGCTACGGAATCGGCGTCTCGTTAGGGCTTTTGATTCTCATCACTACGATCCTCTTAGCTTCCTATTACTGCACCAGAAACGGCTTATCGTCGACGTCCGTGGTCGAGAGAAACTCCAATCGCTCGCCGCCGCAGGCGGAGGGAGAAGCCGCCGTCGTCGTCGATGTCGGACTCGATCAGGAAACGATTAAGAGTTATCCGAAATTGCTGTATTCGGAGGCGAAGCTTCTGAAGAACGATTCCTCTGCCTCTTGCTGTTCAATCTGTTTGGCCGATTACAAGAACTCGAATGTTCTTAGGGCTTTGCCTGATTGCGGCCATCTCTTTCACCTCAAGTGCATCGATCCGTGGCTCAGGCTTCACCCGACCTGTCCGGTTTGCCGGACCTCGCCGATTCCGACGCCGTTGTCGACTCCTCTGGCAGAGCAAGTTCCATTGGCCAGTCGACGGGATTGA

mRNA sequence

ATGAACAACGGCACGGCGGACAGCGGCGGATTTCTGTCCTCAAACAACATCGGCGGTTTCGGCTACGGAATCGGCGTCTCGTTAGGGCTTTTGATTCTCATCACTACGATCCTCTTAGCTTCCTATTACTGCACCAGAAACGGCTTATCGTCGACGTCCGTGGTCGAGAGAAACTCCAATCGCTCGCCGCCGCAGGCGGAGGGAGAAGCCGCCGTCGTCGTCGATGTCGGACTCGATCAGGAAACGATTAAGAGTTATCCGAAATTGCTGTATTCGGAGGCGAAGCTTCTGAAGAACGATTCCTCTGCCTCTTGCTGTTCAATCTGTTTGGCCGATTACAAGAACTCGAATGTTCTTAGGGCTTTGCCTGATTGCGGCCATCTCTTTCACCTCAAGTGCATCGATCCGTGGCTCAGGCTTCACCCGACCTGTCCGGTTTGCCGGACCTCGCCGATTCCGACGCCGTTGTCGACTCCTCTGGCAGAGCAAGTTCCATTGGCCAGTCGACGGGATTGA

Coding sequence (CDS)

ATGAACAACGGCACGGCGGACAGCGGCGGATTTCTGTCCTCAAACAACATCGGCGGTTTCGGCTACGGAATCGGCGTCTCGTTAGGGCTTTTGATTCTCATCACTACGATCCTCTTAGCTTCCTATTACTGCACCAGAAACGGCTTATCGTCGACGTCCGTGGTCGAGAGAAACTCCAATCGCTCGCCGCCGCAGGCGGAGGGAGAAGCCGCCGTCGTCGTCGATGTCGGACTCGATCAGGAAACGATTAAGAGTTATCCGAAATTGCTGTATTCGGAGGCGAAGCTTCTGAAGAACGATTCCTCTGCCTCTTGCTGTTCAATCTGTTTGGCCGATTACAAGAACTCGAATGTTCTTAGGGCTTTGCCTGATTGCGGCCATCTCTTTCACCTCAAGTGCATCGATCCGTGGCTCAGGCTTCACCCGACCTGTCCGGTTTGCCGGACCTCGCCGATTCCGACGCCGTTGTCGACTCCTCTGGCAGAGCAAGTTCCATTGGCCAGTCGACGGGATTGA

Protein sequence

MNNGTADSGGFLSSNNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVVERNSNRSPPQAEGEAAVVVDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVLRALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD

Homology

[Close]

BLAST of Cp4.1LG10g03770 vs. ExPASy Swiss-Prot
Match: Q8RX29 (RING-H2 finger protein ATL70 OS=Arabidopsis thaliana OX=3702 GN=ATL70 PE=2 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 3.0e-50
Identity = 106/165 (64.24%), Postives = 128/165 (77.58%), Query Frame = 0


Query: 7   DSGGFLSSNNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSST-SVVERNSNRSPPQ 66
           D  G L +++IGGF YGIGVS+G+L+LITTI L SYYCTRN LSS+ S   ++S R    
Sbjct: 51  DYNGLLGTDDIGGFRYGIGVSIGVLLLITTITLTSYYCTRNQLSSSPSQTNQDSTRI--- 110

Query: 67  AEGEAAVVVDV--GLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVLRALP 126
                 V++DV  GLD++TI+SYPK+LYSEA   K  ++ASCC+ICL DYK  ++LR LP
Sbjct: 111 HHHHHHVIIDVVPGLDEDTIQSYPKILYSEA---KGPTTASCCAICLGDYKGKHLLRQLP 170

Query: 127 DCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLAS 169
           DC HLFHLKCID WLRL+PTCPVCRTSP+PTPLSTPLAE VPLAS
Sbjct: 171 DCNHLFHLKCIDTWLRLNPTCPVCRTSPLPTPLSTPLAEVVPLAS 209

[Close]

BLAST of Cp4.1LG10g03770 vs. ExPASy Swiss-Prot
Match: Q9FG21 (Putative RING-H2 finger protein ATL71 OS=Arabidopsis thaliana OX=3702 GN=ATL71 PE=3 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 6.1e-43
Identity = 93/183 (50.82%), Postives = 122/183 (66.67%), Query Frame = 0


Query: 8   SGGFL-SSNNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVV-------ERNS 67
           SG +L +++ +GG  YGIGVS+G+L+LITTI L SYYCTR+ +S++          +R S
Sbjct: 10  SGHWLTNTDRMGGLAYGIGVSIGILMLITTITLTSYYCTRSHISASPTTTPRTRRRQRES 69

Query: 68  NRSPPQA---------EGEAAVVVDVGLDQETIKSYPKLLYSEAK----LLKNDSSASCC 127
           N + P           E +  VV  +GL +E IK +PKL Y EA+    L K  S+ SCC
Sbjct: 70  NGTLPPGQERFDFEDDESDTVVVEVLGLTEEVIKGFPKLPYEEARVSYSLQKESSTTSCC 129

Query: 128 SICLADYKNSNVLRALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPL 170
           SICLADYK  +++R LPDC HLFH  C+DPWLRLHPTCPVCRTSP+P+P  TP+A+ VP 
Sbjct: 130 SICLADYKKMDMIRVLPDCNHLFHDNCVDPWLRLHPTCPVCRTSPLPSPAMTPVADVVPF 189

[Close]

BLAST of Cp4.1LG10g03770 vs. ExPASy Swiss-Prot
Match: O82353 (RING-H2 finger protein ATL67 OS=Arabidopsis thaliana OX=3702 GN=ATL67 PE=2 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.0e-29
Identity = 77/175 (44.00%), Postives = 103/175 (58.86%), Query Frame = 0


Query: 19  GFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVVERNSNR------------SPPQA 78
           GFGY I ++LG L+L++T+LL+SY C R+    T+ VE   +R            +    
Sbjct: 34  GFGYSIAIALGFLVLLSTVLLSSYICCRDSRRRTTAVESTGDRGGSVILPRIIFVAEEDN 93

Query: 79  EGEAAVVVDVGLDQETIKSYPKLLYSEAKLLKNDSSAS----------CCSICLADYKNS 138
           E   A  V VGLDQ  I SYPK  +S     K+ S+AS           CSICL +YK +
Sbjct: 94  EDLEAGDVVVGLDQAVINSYPKFHFS-----KDTSAASSDGFGGGGDTTCSICLCEYKEA 153

Query: 139 NVLRALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIP----TPLSTPLAEQVPLA 168
            +LR +P+C H FHL C+D WL+L+ +CPVCR SP+P    TPLSTPL+E VPL+
Sbjct: 154 EMLRMMPECKHYFHLCCLDAWLKLNGSCPVCRNSPLPTPTSTPLSTPLSEVVPLS 203

[Close]

BLAST of Cp4.1LG10g03770 vs. ExPASy Swiss-Prot
Match: Q9FL42 (Putative RING-H2 finger protein ATL69 OS=Arabidopsis thaliana OX=3702 GN=ATL69 PE=3 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.8e-26
Identity = 60/149 (40.27%), Postives = 91/149 (61.07%), Query Frame = 0


Query: 19  GFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVVERNSNRSPPQAEGEAAVVVDVGL 78
           G GYGI +++ +L+LI+ I+LASY C R+  +       +     P    E    V +GL
Sbjct: 12  GLGYGIAIAVSILVLISFIMLASYICIRSKSTGRDEATSDVVLDLPSPAAE----VKLGL 71

Query: 79  DQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVLRALPDCGHLFHLKCIDPWL 138
           D+  I+SYP+++  +++ L   ++   CSICL DY+    +R +P+C H FH  C+D WL
Sbjct: 72  DRPVIESYPRIVLGDSRRLPRPNNGP-CSICLCDYEAREPVRCIPECNHCFHTDCVDEWL 131

Query: 139 RLHPTCPVCRTSPIPTPLSTPLAEQVPLA 168
           R   TCP+CR SP P+ L+TPL++ VPLA
Sbjct: 132 RTSATCPLCRNSPAPSRLATPLSDLVPLA 155

[Close]

BLAST of Cp4.1LG10g03770 vs. ExPASy Swiss-Prot
Match: Q9M313 (RING-H2 finger protein ATL68 OS=Arabidopsis thaliana OX=3702 GN=ATL68 PE=2 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 2.9e-24
Identity = 69/177 (38.98%), Postives = 96/177 (54.24%), Query Frame = 0


Query: 19  GFGYGIGVSLGLLILITTILLASYYCTRNG--LSSTSVVERNSNRS-------------- 78
           G GY I ++LG L+LI+TI+L+SY C R      S S    N+N S              
Sbjct: 25  GLGYSIAIALGFLVLISTIILSSYICCRASRLRFSASAANANANASFSDRGVIVPRIIFV 84

Query: 79  PPQAEGEAAVVVDVGLDQETIKSYPKLLYSE--AKLLKND------SSASCCSICLADYK 138
               + E+  VV  GLD   I SYPK  +++    ++  D         + CSICL +Y 
Sbjct: 85  AEDDDLESGNVVVGGLDHSVINSYPKFHFTKDITAVVNGDGFHDGEGRETTCSICLCEYM 144

Query: 139 NSNVLRALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIP----TPLSTPLAEQVPLA 168
              +LR +P+C H FH+ C+D WL+L+ +CPVCR SP+P    TP STPL+E VPL+
Sbjct: 145 EEEMLRMMPECKHYFHVYCLDAWLKLNGSCPVCRNSPLPTPQSTPQSTPLSEVVPLS 201

[Close]

BLAST of Cp4.1LG10g03770 vs. NCBI nr
Match: XP_023544988.1 (RING-H2 finger protein ATL70-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 340 bits (872), Expect = 8.71e-118
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 0


Query: 1   MNNGTADSGGFLSSNNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVVERNSN 60
           MNNGTADSGGFLSSNNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVVERNSN
Sbjct: 1   MNNGTADSGGFLSSNNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVVERNSN 60

Query: 61  RSPPQAEGEAAVVVDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVLR 120
           RSPPQAEGEAAVVVDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVLR
Sbjct: 61  RSPPQAEGEAAVVVDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVLR 120

Query: 121 ALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 171
           ALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD
Sbjct: 121 ALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 171

[Close]

BLAST of Cp4.1LG10g03770 vs. NCBI nr
Match: XP_022977896.1 (RING-H2 finger protein ATL70-like [Cucurbita maxima])

HSP 1 Score: 339 bits (869), Expect = 2.50e-117
Identity = 170/171 (99.42%), Postives = 171/171 (100.00%), Query Frame = 0


Query: 1   MNNGTADSGGFLSSNNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVVERNSN 60
           MNNGTADSGGFLSSNNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVVERN+N
Sbjct: 1   MNNGTADSGGFLSSNNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVVERNTN 60

Query: 61  RSPPQAEGEAAVVVDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVLR 120
           RSPPQAEGEAAVVVDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVLR
Sbjct: 61  RSPPQAEGEAAVVVDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVLR 120

Query: 121 ALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 171
           ALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD
Sbjct: 121 ALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 171

[Close]

BLAST of Cp4.1LG10g03770 vs. NCBI nr
Match: XP_022925965.1 (RING-H2 finger protein ATL70-like [Cucurbita moschata])

HSP 1 Score: 338 bits (868), Expect = 3.55e-117
Identity = 170/171 (99.42%), Postives = 170/171 (99.42%), Query Frame = 0


Query: 1   MNNGTADSGGFLSSNNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVVERNSN 60
           MNNGTADSGGFLSSNNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVVERNSN
Sbjct: 1   MNNGTADSGGFLSSNNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVVERNSN 60

Query: 61  RSPPQAEGEAAVVVDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVLR 120
           RSPPQAEGEAA VVDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVLR
Sbjct: 61  RSPPQAEGEAAAVVDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVLR 120

Query: 121 ALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 171
           ALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD
Sbjct: 121 ALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 171

[Close]

BLAST of Cp4.1LG10g03770 vs. NCBI nr
Match: KAG6604314.1 (RING-H2 finger protein ATL70, partial [Cucurbita argyrosperma subsp. sororia] >KAG7034467.1 RING-H2 finger protein ATL70, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 338 bits (867), Expect = 5.04e-117
Identity = 169/171 (98.83%), Postives = 170/171 (99.42%), Query Frame = 0


Query: 1   MNNGTADSGGFLSSNNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVVERNSN 60
           MNNGTADSGGFLSSNNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVVERNSN
Sbjct: 1   MNNGTADSGGFLSSNNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVVERNSN 60

Query: 61  RSPPQAEGEAAVVVDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVLR 120
           RSPPQAEGEA VV+DVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVLR
Sbjct: 61  RSPPQAEGEAGVVIDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVLR 120

Query: 121 ALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 171
           ALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD
Sbjct: 121 ALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 171

[Close]

BLAST of Cp4.1LG10g03770 vs. NCBI nr
Match: XP_008462625.1 (PREDICTED: RING-H2 finger protein ATL70-like [Cucumis melo] >KAA0025213.1 RING-H2 finger protein ATL70-like [Cucumis melo var. makuwa] >TYK07452.1 RING-H2 finger protein ATL70-like [Cucumis melo var. makuwa])

HSP 1 Score: 301 bits (772), Expect = 1.59e-102
Identity = 150/172 (87.21%), Postives = 163/172 (94.77%), Query Frame = 0


Query: 1   MNNGTADSGGFLSSNNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVVERNSN 60
           MNNGTA++GGFLSS+NIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSV++  ++
Sbjct: 1   MNNGTAETGGFLSSSNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVIQSTAS 60

Query: 61  RSPPQAEGEA-AVVVDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVL 120
           RSPPQA  E  +VVV++GLDQETI SYPKLLYSEAKL KNDS+ASCCSICLADYKNS+VL
Sbjct: 61  RSPPQAVAELDSVVVEIGLDQETITSYPKLLYSEAKLQKNDSTASCCSICLADYKNSDVL 120

Query: 121 RALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 171
           R LPDCGHLFHLKC+DPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD
Sbjct: 121 RLLPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 172

[Close]

BLAST of Cp4.1LG10g03770 vs. ExPASy TrEMBL
Match: A0A6J1IL86 (RING-H2 finger protein ATL70-like OS=Cucurbita maxima OX=3661 GN=LOC111478050 PE=4 SV=1)

HSP 1 Score: 339 bits (869), Expect = 1.21e-117
Identity = 170/171 (99.42%), Postives = 171/171 (100.00%), Query Frame = 0


Query: 1   MNNGTADSGGFLSSNNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVVERNSN 60
           MNNGTADSGGFLSSNNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVVERN+N
Sbjct: 1   MNNGTADSGGFLSSNNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVVERNTN 60

Query: 61  RSPPQAEGEAAVVVDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVLR 120
           RSPPQAEGEAAVVVDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVLR
Sbjct: 61  RSPPQAEGEAAVVVDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVLR 120

Query: 121 ALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 171
           ALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD
Sbjct: 121 ALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 171

[Close]

BLAST of Cp4.1LG10g03770 vs. ExPASy TrEMBL
Match: A0A6J1EJP9 (RING-H2 finger protein ATL70-like OS=Cucurbita moschata OX=3662 GN=LOC111433226 PE=4 SV=1)

HSP 1 Score: 338 bits (868), Expect = 1.72e-117
Identity = 170/171 (99.42%), Postives = 170/171 (99.42%), Query Frame = 0


Query: 1   MNNGTADSGGFLSSNNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVVERNSN 60
           MNNGTADSGGFLSSNNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVVERNSN
Sbjct: 1   MNNGTADSGGFLSSNNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVVERNSN 60

Query: 61  RSPPQAEGEAAVVVDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVLR 120
           RSPPQAEGEAA VVDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVLR
Sbjct: 61  RSPPQAEGEAAAVVDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVLR 120

Query: 121 ALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 171
           ALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD
Sbjct: 121 ALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 171

[Close]

BLAST of Cp4.1LG10g03770 vs. ExPASy TrEMBL
Match: A0A5A7SKL1 (RING-H2 finger protein ATL70-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold202G001830 PE=4 SV=1)

HSP 1 Score: 301 bits (772), Expect = 7.72e-103
Identity = 150/172 (87.21%), Postives = 163/172 (94.77%), Query Frame = 0


Query: 1   MNNGTADSGGFLSSNNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVVERNSN 60
           MNNGTA++GGFLSS+NIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSV++  ++
Sbjct: 1   MNNGTAETGGFLSSSNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVIQSTAS 60

Query: 61  RSPPQAEGEA-AVVVDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVL 120
           RSPPQA  E  +VVV++GLDQETI SYPKLLYSEAKL KNDS+ASCCSICLADYKNS+VL
Sbjct: 61  RSPPQAVAELDSVVVEIGLDQETITSYPKLLYSEAKLQKNDSTASCCSICLADYKNSDVL 120

Query: 121 RALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 171
           R LPDCGHLFHLKC+DPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD
Sbjct: 121 RLLPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 172

[Close]

BLAST of Cp4.1LG10g03770 vs. ExPASy TrEMBL
Match: A0A1S3CHE9 (RING-H2 finger protein ATL70-like OS=Cucumis melo OX=3656 GN=LOC103500941 PE=4 SV=1)

HSP 1 Score: 301 bits (772), Expect = 7.72e-103
Identity = 150/172 (87.21%), Postives = 163/172 (94.77%), Query Frame = 0


Query: 1   MNNGTADSGGFLSSNNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVVERNSN 60
           MNNGTA++GGFLSS+NIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSV++  ++
Sbjct: 1   MNNGTAETGGFLSSSNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVIQSTAS 60

Query: 61  RSPPQAEGEA-AVVVDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVL 120
           RSPPQA  E  +VVV++GLDQETI SYPKLLYSEAKL KNDS+ASCCSICLADYKNS+VL
Sbjct: 61  RSPPQAVAELDSVVVEIGLDQETITSYPKLLYSEAKLQKNDSTASCCSICLADYKNSDVL 120

Query: 121 RALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 171
           R LPDCGHLFHLKC+DPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD
Sbjct: 121 RLLPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 172

[Close]

BLAST of Cp4.1LG10g03770 vs. ExPASy TrEMBL
Match: A0A0A0KIW7 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G476670 PE=4 SV=1)

HSP 1 Score: 299 bits (766), Expect = 6.34e-102
Identity = 151/172 (87.79%), Postives = 160/172 (93.02%), Query Frame = 0


Query: 1   MNNGTADSGGFLSSNNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVVERNSN 60
           MNNGTA++GGFLSS+NIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSS+ V     N
Sbjct: 1   MNNGTAETGGFLSSSNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSSVVQRTPPN 60

Query: 61  RSPPQAEGEA-AVVVDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVL 120
           RSPPQA GE  +VVVD+GLDQETI SYPKLLYSEAKL KNDS+ASCCSICLADYKNS+VL
Sbjct: 61  RSPPQAVGEMDSVVVDIGLDQETITSYPKLLYSEAKLQKNDSTASCCSICLADYKNSDVL 120

Query: 121 RALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 171
           R LPDCGHLFHLKC+DPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD
Sbjct: 121 RLLPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 172

[Close]

BLAST of Cp4.1LG10g03770 vs. TAIR 10
Match: AT2G35910.1 (RING/U-box superfamily protein )

HSP 1 Score: 199.5 bits (506), Expect = 2.2e-51
Identity = 106/165 (64.24%), Postives = 128/165 (77.58%), Query Frame = 0


Query: 7   DSGGFLSSNNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSST-SVVERNSNRSPPQ 66
           D  G L +++IGGF YGIGVS+G+L+LITTI L SYYCTRN LSS+ S   ++S R    
Sbjct: 51  DYNGLLGTDDIGGFRYGIGVSIGVLLLITTITLTSYYCTRNQLSSSPSQTNQDSTRI--- 110

Query: 67  AEGEAAVVVDV--GLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVLRALP 126
                 V++DV  GLD++TI+SYPK+LYSEA   K  ++ASCC+ICL DYK  ++LR LP
Sbjct: 111 HHHHHHVIIDVVPGLDEDTIQSYPKILYSEA---KGPTTASCCAICLGDYKGKHLLRQLP 170

Query: 127 DCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLAS 169
           DC HLFHLKCID WLRL+PTCPVCRTSP+PTPLSTPLAE VPLAS
Sbjct: 171 DCNHLFHLKCIDTWLRLNPTCPVCRTSPLPTPLSTPLAEVVPLAS 209

[Close]

BLAST of Cp4.1LG10g03770 vs. TAIR 10
Match: AT5G06490.1 (RING/U-box superfamily protein )

HSP 1 Score: 175.3 bits (443), Expect = 4.3e-44
Identity = 93/183 (50.82%), Postives = 122/183 (66.67%), Query Frame = 0


Query: 8   SGGFL-SSNNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVV-------ERNS 67
           SG +L +++ +GG  YGIGVS+G+L+LITTI L SYYCTR+ +S++          +R S
Sbjct: 10  SGHWLTNTDRMGGLAYGIGVSIGILMLITTITLTSYYCTRSHISASPTTTPRTRRRQRES 69

Query: 68  NRSPPQA---------EGEAAVVVDVGLDQETIKSYPKLLYSEAK----LLKNDSSASCC 127
           N + P           E +  VV  +GL +E IK +PKL Y EA+    L K  S+ SCC
Sbjct: 70  NGTLPPGQERFDFEDDESDTVVVEVLGLTEEVIKGFPKLPYEEARVSYSLQKESSTTSCC 129

Query: 128 SICLADYKNSNVLRALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPL 170
           SICLADYK  +++R LPDC HLFH  C+DPWLRLHPTCPVCRTSP+P+P  TP+A+ VP 
Sbjct: 130 SICLADYKKMDMIRVLPDCNHLFHDNCVDPWLRLHPTCPVCRTSPLPSPAMTPVADVVPF 189

[Close]

BLAST of Cp4.1LG10g03770 vs. TAIR 10
Match: AT2G46160.1 (RING/U-box superfamily protein )

HSP 1 Score: 131.3 bits (329), Expect = 7.2e-31
Identity = 77/175 (44.00%), Postives = 103/175 (58.86%), Query Frame = 0


Query: 19  GFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVVERNSNR------------SPPQA 78
           GFGY I ++LG L+L++T+LL+SY C R+    T+ VE   +R            +    
Sbjct: 34  GFGYSIAIALGFLVLLSTVLLSSYICCRDSRRRTTAVESTGDRGGSVILPRIIFVAEEDN 93

Query: 79  EGEAAVVVDVGLDQETIKSYPKLLYSEAKLLKNDSSAS----------CCSICLADYKNS 138
           E   A  V VGLDQ  I SYPK  +S     K+ S+AS           CSICL +YK +
Sbjct: 94  EDLEAGDVVVGLDQAVINSYPKFHFS-----KDTSAASSDGFGGGGDTTCSICLCEYKEA 153

Query: 139 NVLRALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIP----TPLSTPLAEQVPLA 168
            +LR +P+C H FHL C+D WL+L+ +CPVCR SP+P    TPLSTPL+E VPL+
Sbjct: 154 EMLRMMPECKHYFHLCCLDAWLKLNGSCPVCRNSPLPTPTSTPLSTPLSEVVPLS 203

[Close]

BLAST of Cp4.1LG10g03770 vs. TAIR 10
Match: AT5G07040.1 (RING/U-box superfamily protein )

HSP 1 Score: 120.6 bits (301), Expect = 1.3e-27
Identity = 60/149 (40.27%), Postives = 91/149 (61.07%), Query Frame = 0


Query: 19  GFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVVERNSNRSPPQAEGEAAVVVDVGL 78
           G GYGI +++ +L+LI+ I+LASY C R+  +       +     P    E    V +GL
Sbjct: 12  GLGYGIAIAVSILVLISFIMLASYICIRSKSTGRDEATSDVVLDLPSPAAE----VKLGL 71

Query: 79  DQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVLRALPDCGHLFHLKCIDPWL 138
           D+  I+SYP+++  +++ L   ++   CSICL DY+    +R +P+C H FH  C+D WL
Sbjct: 72  DRPVIESYPRIVLGDSRRLPRPNNGP-CSICLCDYEAREPVRCIPECNHCFHTDCVDEWL 131

Query: 139 RLHPTCPVCRTSPIPTPLSTPLAEQVPLA 168
           R   TCP+CR SP P+ L+TPL++ VPLA
Sbjct: 132 RTSATCPLCRNSPAPSRLATPLSDLVPLA 155

[Close]

BLAST of Cp4.1LG10g03770 vs. TAIR 10
Match: AT3G61550.1 (RING/U-box superfamily protein )

HSP 1 Score: 113.2 bits (282), Expect = 2.0e-25
Identity = 69/177 (38.98%), Postives = 96/177 (54.24%), Query Frame = 0


Query: 19  GFGYGIGVSLGLLILITTILLASYYCTRNG--LSSTSVVERNSNRS-------------- 78
           G GY I ++LG L+LI+TI+L+SY C R      S S    N+N S              
Sbjct: 25  GLGYSIAIALGFLVLISTIILSSYICCRASRLRFSASAANANANASFSDRGVIVPRIIFV 84

Query: 79  PPQAEGEAAVVVDVGLDQETIKSYPKLLYSE--AKLLKND------SSASCCSICLADYK 138
               + E+  VV  GLD   I SYPK  +++    ++  D         + CSICL +Y 
Sbjct: 85  AEDDDLESGNVVVGGLDHSVINSYPKFHFTKDITAVVNGDGFHDGEGRETTCSICLCEYM 144

Query: 139 NSNVLRALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIP----TPLSTPLAEQVPLA 168
              +LR +P+C H FH+ C+D WL+L+ +CPVCR SP+P    TP STPL+E VPL+
Sbjct: 145 EEEMLRMMPECKHYFHVYCLDAWLKLNGSCPVCRNSPLPTPQSTPQSTPLSEVVPLS 201

The following BLAST results are available for this feature:

BLAST of Cp4.1LG10g03770 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8RX29	3.0e-50	64.24	RING-H2 finger protein ATL70 OS=Arabidopsis thaliana OX=3702 GN=ATL70 PE=2 SV=1	[more]
Q9FG21	6.1e-43	50.82	Putative RING-H2 finger protein ATL71 OS=Arabidopsis thaliana OX=3702 GN=ATL71 P...	[more]
O82353	1.0e-29	44.00	RING-H2 finger protein ATL67 OS=Arabidopsis thaliana OX=3702 GN=ATL67 PE=2 SV=1	[more]
Q9FL42	1.8e-26	40.27	Putative RING-H2 finger protein ATL69 OS=Arabidopsis thaliana OX=3702 GN=ATL69 P...	[more]
Q9M313	2.9e-24	38.98	RING-H2 finger protein ATL68 OS=Arabidopsis thaliana OX=3702 GN=ATL68 PE=2 SV=1	[more]

BLAST of Cp4.1LG10g03770 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023544988.1	8.71e-118	100.00	RING-H2 finger protein ATL70-like [Cucurbita pepo subsp. pepo]	[more]
XP_022977896.1	2.50e-117	99.42	RING-H2 finger protein ATL70-like [Cucurbita maxima]	[more]
XP_022925965.1	3.55e-117	99.42	RING-H2 finger protein ATL70-like [Cucurbita moschata]	[more]
KAG6604314.1	5.04e-117	98.83	RING-H2 finger protein ATL70, partial [Cucurbita argyrosperma subsp. sororia] >K...	[more]
XP_008462625.1	1.59e-102	87.21	PREDICTED: RING-H2 finger protein ATL70-like [Cucumis melo] >KAA0025213.1 RING-H...	[more]

BLAST of Cp4.1LG10g03770 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IL86	1.21e-117	99.42	RING-H2 finger protein ATL70-like OS=Cucurbita maxima OX=3661 GN=LOC111478050 PE...	[more]
A0A6J1EJP9	1.72e-117	99.42	RING-H2 finger protein ATL70-like OS=Cucurbita moschata OX=3662 GN=LOC111433226 ...	[more]
A0A5A7SKL1	7.72e-103	87.21	RING-H2 finger protein ATL70-like OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A1S3CHE9	7.72e-103	87.21	RING-H2 finger protein ATL70-like OS=Cucumis melo OX=3656 GN=LOC103500941 PE=4 S...	[more]
A0A0A0KIW7	6.34e-102	87.79	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G476670 P...	[more]

BLAST of Cp4.1LG10g03770 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G35910.1	2.2e-51	64.24	RING/U-box superfamily protein	[more]
AT5G06490.1	4.3e-44	50.82	RING/U-box superfamily protein	[more]
AT2G46160.1	7.2e-31	44.00	RING/U-box superfamily protein	[more]
AT5G07040.1	1.3e-27	40.27	RING/U-box superfamily protein	[more]
AT3G61550.1	2.0e-25	38.98	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 106..147 e-value: 1.4E-7 score: 41.2
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 106..148 e-value: 1.7E-12 score: 47.4
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 106..148 score: 12.946621
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 66..152 e-value: 1.1E-22 score: 81.5
None	No IPR available	PANTHER	PTHR46719	TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED	coord: 1..170
None	No IPR available	PANTHER	PTHR46719:SF7	RING-H2 FINGER PROTEIN ATL71-RELATED	coord: 1..170
None	No IPR available	CDD	cd16454	RING-H2_PA-TM-RING	coord: 105..148 e-value: 6.14074E-20 score: 76.1865
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 82..153

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG10g03770.1	Cp4.1LG10g03770.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane