Cp4.1LG10g02520 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG10g02520
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	precursor of CEP7-like
Location	Cp4.1LG10: 2504450 .. 2504716 (-)
RNA-Seq Expression	Cp4.1LG10g02520
Synteny	Cp4.1LG10g02520

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCACTCACTTCTTAACCTACTTCTTTGCGTTCCTCATTTTGTCCCACCAACTTGTTCTCATTGAAGCAAGGAGTCTGAAAGTAAACAGCATCAATCCAGACACTCCCAAAACCATAACCAATTCAGAACCCCAAAACAGCATTAACAACGATGCTAAAAACACCAAGAAGCTGCACCATAGAATTGCCGATGGCTTTGTGGATGCCTTTCGCCCCACCACGCCCGGCCATAGTCCTGGCGTTGGTCACTCCATTCAAAACTGA

mRNA sequence

ATGGCCACTCACTTCTTAACCTACTTCTTTGCGTTCCTCATTTTGTCCCACCAACTTGTTCTCATTGAAGCAAGGAGTCTGAAAGTAAACAGCATCAATCCAGACACTCCCAAAACCATAACCAATTCAGAACCCCAAAACAGCATTAACAACGATGCTAAAAACACCAAGAAGCTGCACCATAGAATTGCCGATGGCTTTGTGGATGCCTTTCGCCCCACCACGCCCGGCCATAGTCCTGGCGTTGGTCACTCCATTCAAAACTGA

Coding sequence (CDS)

ATGGCCACTCACTTCTTAACCTACTTCTTTGCGTTCCTCATTTTGTCCCACCAACTTGTTCTCATTGAAGCAAGGAGTCTGAAAGTAAACAGCATCAATCCAGACACTCCCAAAACCATAACCAATTCAGAACCCCAAAACAGCATTAACAACGATGCTAAAAACACCAAGAAGCTGCACCATAGAATTGCCGATGGCTTTGTGGATGCCTTTCGCCCCACCACGCCCGGCCATAGTCCTGGCGTTGGTCACTCCATTCAAAACTGA

Protein sequence

MATHFLTYFFAFLILSHQLVLIEARSLKVNSINPDTPKTITNSEPQNSINNDAKNTKKLHHRIADGFVDAFRPTTPGHSPGVGHSIQN

Homology

[Close]

BLAST of Cp4.1LG10g02520 vs. ExPASy Swiss-Prot
Match: B3H5A9 (Precursor of CEP6 OS=Arabidopsis thaliana OX=3702 GN=CEP6 PE=1 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 4.9e-04
Identity = 17/25 (68.00%), Postives = 21/25 (84.00%), Query Frame = 0


Query: 64 ADGFVDAFRPTTPGHSPGVGHSIQN 89
          A G+ D F PTTPGHSPGVGH+++N
Sbjct: 72 AGGYKDDFEPTTPGHSPGVGHAVKN 96

[Close]

BLAST of Cp4.1LG10g02520 vs. ExPASy Swiss-Prot
Match: O80460 (Precursor of CEP3 OS=Arabidopsis thaliana OX=3702 GN=CEP3 PE=1 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 6.4e-04
Identity = 34/85 (40.00%), Postives = 46/85 (54.12%), Query Frame = 0


Query: 8  YFFAFL-ILSHQLVLIEARSLKVNSINPDTPKTITNSE---PQNSINNDAKNTKKLHHRI 67
          Y FAF+ +L+  +  IE R L        T  T+T SE      S+ + +  T+ L    
Sbjct: 7  YVFAFIFLLTISVGSIEGRKL--------TKFTVTTSEEIRAGGSVLSSSPPTEPLESPP 66

Query: 68 ADGFVDAFRPTTPGHSPGVGHSIQN 89
          + G VD FRPT PGHSPG+GHS+ N
Sbjct: 67 SHG-VDTFRPTEPGHSPGIGHSVHN 82

[Close]

BLAST of Cp4.1LG10g02520 vs. NCBI nr
Match: KAG6604188.1 (Precursor of CEP3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 177 bits (448), Expect = 8.60e-56
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MATHFLTYFFAFLILSHQLVLIEARSLKVNSINPDTPKTITNSEPQNSINNDAKNTKKLH 60
          MATHFLTYFFAFLILSHQLVLIEARSLKVNSINPDTPKTITNSEPQNSINNDAKNTKKLH
Sbjct: 1  MATHFLTYFFAFLILSHQLVLIEARSLKVNSINPDTPKTITNSEPQNSINNDAKNTKKLH 60

Query: 61 HRIADGFVDAFRPTTPGHSPGVGHSIQN 88
          HRIADGFVDAFRPTTPGHSPGVGHSIQN
Sbjct: 61 HRIADGFVDAFRPTTPGHSPGVGHSIQN 88

[Close]

BLAST of Cp4.1LG10g02520 vs. NCBI nr
Match: TYK12898.1 (hypothetical protein E5676_scaffold255G004920 [Cucumis melo var. makuwa])

HSP 1 Score: 114 bits (284), Expect = 1.06e-30
Identity = 65/97 (67.01%), Postives = 69/97 (71.13%), Query Frame = 0


Query: 2  ATHFLTYFFAFLILSHQLVLIEARSLKVNS--------INPDTPKTITNS--EPQNSINN 61
          AT  LTYFF F+ILSH LV+IE R LKVN         + P TPKTIT S  E Q SIN 
Sbjct: 3  ATRVLTYFFLFIILSHHLVVIEGRRLKVNKKGLRCGTCMTPTTPKTITKSGEEAQKSIN- 62

Query: 62 DAKNTKKLHHRIADGFVDAFRPTTPGHSPGVGHSIQN 88
               KKLHHRIADG+VDAFRPTTPGHSPGVGHSIQN
Sbjct: 63 -----KKLHHRIADGYVDAFRPTTPGHSPGVGHSIQN 93

[Close]

BLAST of Cp4.1LG10g02520 vs. NCBI nr
Match: KGN48514.1 (hypothetical protein Csa_002922 [Cucumis sativus])

HSP 1 Score: 109 bits (273), Expect = 5.01e-29
Identity = 63/97 (64.95%), Postives = 67/97 (69.07%), Query Frame = 0


Query: 2  ATHFLTYFFAFLILSHQLVLIEARSLKVNS--------INPDTPKTITNSEP--QNSINN 61
          AT  LTYFF F+ILSH LV+IE R LKV          + P TPKTIT SE   Q S NN
Sbjct: 3  ATRVLTYFFLFIILSHHLVVIEGRRLKVKKNGLRCGTCMTPTTPKTITKSEEEAQKSTNN 62

Query: 62 DAKNTKKLHHRIADGFVDAFRPTTPGHSPGVGHSIQN 88
                KLHHRIADG+VDAFRPTTPGHSPGVGHSIQN
Sbjct: 63 ------KLHHRIADGYVDAFRPTTPGHSPGVGHSIQN 93

[Close]

BLAST of Cp4.1LG10g02520 vs. NCBI nr
Match: KAF3438931.1 (hypothetical protein FNV43_RR17206 [Rhamnella rubrinervis])

HSP 1 Score: 68.9 bits (167), Expect = 7.39e-13
Identity = 42/100 (42.00%), Postives = 56/100 (56.00%), Query Frame = 0


Query: 2  ATHFLTYFFAFLILSHQLVLIEARSLKVNS-----------INPDTPKTITNSEPQNSIN 61
          A+H    FF  +ILS++ V IEAR+LK              ++P+ PKTI          
Sbjct: 4  ASHICLVFFVLMILSNEFVSIEARNLKQRKERKDSTFVKVQMSPNAPKTIAREAMVRRF- 63

Query: 62 NDAKNTKKLHHRIAD--GFVDAFRPTTPGHSPGVGHSIQN 88
              +T +LH+ + +  G+V AFRPTTPGHSPGVGHSI N
Sbjct: 64 ---ASTSQLHNSVKELEGYVGAFRPTTPGHSPGVGHSIHN 99

[Close]

BLAST of Cp4.1LG10g02520 vs. NCBI nr
Match: PIA46381.1 (hypothetical protein AQUCO_01500130v1 [Aquilegia coerulea])

HSP 1 Score: 66.6 bits (161), Expect = 5.02e-12
Identity = 34/78 (43.59%), Postives = 50/78 (64.10%), Query Frame = 0


Query: 13 LILSHQLVLIEARSLKVNSINPDTPKTITNSEPQNSINNDAKNTKKLHHRIAD--GFVDA 72
          L+LSH+++  E R LK+        K  +++  +    +D + T  +HH+I    GFV+A
Sbjct: 16 LVLSHEMIHTEGRHLKIKK-RTACVKCSSSNTVRGKKESDGQKTSDVHHKITPMAGFVEA 75

Query: 73 FRPTTPGHSPGVGHSIQN 88
          FRPTTPGHSPG+GHSIQ+
Sbjct: 76 FRPTTPGHSPGIGHSIQH 92

[Close]

BLAST of Cp4.1LG10g02520 vs. ExPASy TrEMBL
Match: A0A5D3CP07 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G004920 PE=3 SV=1)

HSP 1 Score: 114 bits (284), Expect = 5.12e-31
Identity = 65/97 (67.01%), Postives = 69/97 (71.13%), Query Frame = 0


Query: 2  ATHFLTYFFAFLILSHQLVLIEARSLKVNS--------INPDTPKTITNS--EPQNSINN 61
          AT  LTYFF F+ILSH LV+IE R LKVN         + P TPKTIT S  E Q SIN 
Sbjct: 3  ATRVLTYFFLFIILSHHLVVIEGRRLKVNKKGLRCGTCMTPTTPKTITKSGEEAQKSIN- 62

Query: 62 DAKNTKKLHHRIADGFVDAFRPTTPGHSPGVGHSIQN 88
               KKLHHRIADG+VDAFRPTTPGHSPGVGHSIQN
Sbjct: 63 -----KKLHHRIADGYVDAFRPTTPGHSPGVGHSIQN 93

[Close]

BLAST of Cp4.1LG10g02520 vs. ExPASy TrEMBL
Match: A0A0A0KIB5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G490780 PE=3 SV=1)

HSP 1 Score: 109 bits (273), Expect = 2.43e-29
Identity = 63/97 (64.95%), Postives = 67/97 (69.07%), Query Frame = 0


Query: 2  ATHFLTYFFAFLILSHQLVLIEARSLKVNS--------INPDTPKTITNSEP--QNSINN 61
          AT  LTYFF F+ILSH LV+IE R LKV          + P TPKTIT SE   Q S NN
Sbjct: 3  ATRVLTYFFLFIILSHHLVVIEGRRLKVKKNGLRCGTCMTPTTPKTITKSEEEAQKSTNN 62

Query: 62 DAKNTKKLHHRIADGFVDAFRPTTPGHSPGVGHSIQN 88
                KLHHRIADG+VDAFRPTTPGHSPGVGHSIQN
Sbjct: 63 ------KLHHRIADGYVDAFRPTTPGHSPGVGHSIQN 93

[Close]

BLAST of Cp4.1LG10g02520 vs. ExPASy TrEMBL
Match: A0A2G5DS81 (Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_01500130v1 PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.43e-12
Identity = 34/78 (43.59%), Postives = 50/78 (64.10%), Query Frame = 0


Query: 13 LILSHQLVLIEARSLKVNSINPDTPKTITNSEPQNSINNDAKNTKKLHHRIAD--GFVDA 72
          L+LSH+++  E R LK+        K  +++  +    +D + T  +HH+I    GFV+A
Sbjct: 16 LVLSHEMIHTEGRHLKIKK-RTACVKCSSSNTVRGKKESDGQKTSDVHHKITPMAGFVEA 75

Query: 73 FRPTTPGHSPGVGHSIQN 88
          FRPTTPGHSPG+GHSIQ+
Sbjct: 76 FRPTTPGHSPGIGHSIQH 92

[Close]

BLAST of Cp4.1LG10g02520 vs. ExPASy TrEMBL
Match: U5G8B4 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_007G041500 PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.49e-12
Identity = 34/84 (40.48%), Postives = 52/84 (61.90%), Query Frame = 0


Query: 9  FFAFLILSHQLVLIEARSLKVNSINPDTPKTITNSEP--QNSINNDAKNTKKLHHRI--A 68
          FF  ++LS+ ++ +E RSL++        +     +   +N++ N A  +  LHH +  +
Sbjct: 10 FFLLMLLSYNILCVEGRSLELKKALKHAKRCNPGGKSIERNTLLNSASPSNHLHHTVKTS 69

Query: 69 DGFVDAFRPTTPGHSPGVGHSIQN 88
          DGFV+AFRPT PGHSPGVGHS+ N
Sbjct: 70 DGFVEAFRPTNPGHSPGVGHSVHN 93

[Close]

BLAST of Cp4.1LG10g02520 vs. ExPASy TrEMBL
Match: A0A6N2L5F9 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS143332 PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.46e-11
Identity = 38/87 (43.68%), Postives = 55/87 (63.22%), Query Frame = 0


Query: 13 LILSHQLVLIEARSLKVNSINPDTPKTITNSEPQNSINND-AKNTK--------KLHH-- 72
          ++LS+ ++ +E RSL++        K + +++P N+     A+NTK        +LHH  
Sbjct: 1  MLLSYNILCVEGRSLELK-------KGLKHAKPCNAEGKSIARNTKLNIASPDYQLHHTT 60

Query: 73 RIADGFVDAFRPTTPGHSPGVGHSIQN 88
          +  DGFV+AFRPTTPGHSPGVGHSI N
Sbjct: 61 KTGDGFVEAFRPTTPGHSPGVGHSIHN 80

[Close]

BLAST of Cp4.1LG10g02520 vs. TAIR 10
Match: AT5G66816.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G50610.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 45.1 bits (105), Expect = 3.5e-05
Identity = 17/25 (68.00%), Postives = 21/25 (84.00%), Query Frame = 0


Query: 64 ADGFVDAFRPTTPGHSPGVGHSIQN 89
          A G+ D F PTTPGHSPGVGH+++N
Sbjct: 72 AGGYKDDFEPTTPGHSPGVGHAVKN 96

[Close]

BLAST of Cp4.1LG10g02520 vs. TAIR 10
Match: AT2G23440.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; Has 25 Blast hits to 25 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 44.7 bits (104), Expect = 4.6e-05
Identity = 34/85 (40.00%), Postives = 46/85 (54.12%), Query Frame = 0


Query: 8  YFFAFL-ILSHQLVLIEARSLKVNSINPDTPKTITNSE---PQNSINNDAKNTKKLHHRI 67
          Y FAF+ +L+  +  IE R L        T  T+T SE      S+ + +  T+ L    
Sbjct: 7  YVFAFIFLLTISVGSIEGRKL--------TKFTVTTSEEIRAGGSVLSSSPPTEPLESPP 66

Query: 68 ADGFVDAFRPTTPGHSPGVGHSIQN 89
          + G VD FRPT PGHSPG+GHS+ N
Sbjct: 67 SHG-VDTFRPTEPGHSPGIGHSVHN 82

[Close]

BLAST of Cp4.1LG10g02520 vs. TAIR 10
Match: AT3G50610.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G66816.1); Has 125 Blast hits to 60 proteins in 16 species: Archae - 0; Bacteria - 2; Metazoa - 10; Fungi - 4; Plants - 97; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). )

HSP 1 Score: 41.6 bits (96), Expect = 3.9e-04
Identity = 15/20 (75.00%), Postives = 19/20 (95.00%), Query Frame = 0


Query: 69  DAFRPTTPGHSPGVGHSIQN 89
           D F+PTTPGHSPGVGH+++N
Sbjct: 205 DDFKPTTPGHSPGVGHAVKN 224

The following BLAST results are available for this feature:

BLAST of Cp4.1LG10g02520 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B3H5A9	4.9e-04	68.00	Precursor of CEP6 OS=Arabidopsis thaliana OX=3702 GN=CEP6 PE=1 SV=1	[more]
O80460	6.4e-04	40.00	Precursor of CEP3 OS=Arabidopsis thaliana OX=3702 GN=CEP3 PE=1 SV=1	[more]

BLAST of Cp4.1LG10g02520 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6604188.1	8.60e-56	100.00	Precursor of CEP3, partial [Cucurbita argyrosperma subsp. sororia]	[more]
TYK12898.1	1.06e-30	67.01	hypothetical protein E5676_scaffold255G004920 [Cucumis melo var. makuwa]	[more]
KGN48514.1	5.01e-29	64.95	hypothetical protein Csa_002922 [Cucumis sativus]	[more]
KAF3438931.1	7.39e-13	42.00	hypothetical protein FNV43_RR17206 [Rhamnella rubrinervis]	[more]
PIA46381.1	5.02e-12	43.59	hypothetical protein AQUCO_01500130v1 [Aquilegia coerulea]	[more]

BLAST of Cp4.1LG10g02520 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CP07	5.12e-31	67.01	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KIB5	2.43e-29	64.95	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G490780 PE=3 SV=1	[more]
A0A2G5DS81	2.43e-12	43.59	Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_01500130v1 PE=3...	[more]
U5G8B4	2.49e-12	40.48	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_007G041500 PE=3 ...	[more]
A0A6N2L5F9	1.46e-11	43.68	Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS143332 PE=3 SV=...	[more]

BLAST of Cp4.1LG10g02520 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G66816.1	3.5e-05	68.00	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G23440.1	4.6e-05	40.00	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G50610.1	3.9e-04	75.00	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 32..52
None	No IPR available	PANTHER	PTHR33348:SF28	PRECURSOR OF CEP7	coord: 4..88
IPR033250	C-terminally encoded peptide	PANTHER	PTHR33348	PRECURSOR OF CEP5	coord: 4..88

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG10g02520.1	Cp4.1LG10g02520.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1902025	nitrate import
biological_process	GO:1901371	regulation of leaf morphogenesis
biological_process	GO:2000280	regulation of root development
biological_process	GO:0048364	root development
cellular_component	GO:0005576	extracellular region
molecular_function	GO:0005179	hormone activity