Cp4.1LG10g02120 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG10g02120
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description60S ribosomal protein L26
LocationCp4.1LG10: 2839291 .. 2839731 (+)
RNA-Seq ExpressionCp4.1LG10g02120
SyntenyCp4.1LG10g02120
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGTACAATCCTAGGGTTTCCAGTTCCCGCCGCAAGAGCCGTAAGGCTCATTTTTCGGCGCCGTCGAGCGTTCGTCGGGTTATTATGAGTGCTCCTCTCTCGACTGACCTCCGGTCAAAGTACAACGTCCGATCCATGCCGATTCGGAAGGATGATGAGGTCCAAGTTGTCCGTGGAACTTACAAGGGTCGGGAGGGCAAGGTAGTGCAGGTGTATCGTAAAAAGTGGGTTATCCACATCGAGCGCATCACTCGCGAAAAGGTTAACGGTTCCACTGTCAATGTTGGCATCAACCCCTCGAAGGTCGTGATTACGAAGCTCAGGCTGGACAAGGACCGCAAGTCACTTCTGGATCGTAAAGGCAAGGGCCGCGCCGCCTCTGATAAGGACAAGGGTACCAAGTTCACCGCCGAGGATATCATGCAGAGCGTCGACTAA

mRNA sequence

ATGAAGTACAATCCTAGGGTTTCCAGTTCCCGCCGCAAGAGCCGTAAGGCTCATTTTTCGGCGCCGTCGAGCGTTCGTCGGGTTATTATGAGTGCTCCTCTCTCGACTGACCTCCGGTCAAAGTACAACGTCCGATCCATGCCGATTCGGAAGGATGATGAGGTCCAAGTTGTCCGTGGAACTTACAAGGGTCGGGAGGGCAAGGTAGTGCAGGTGTATCGTAAAAAGTGGGTTATCCACATCGAGCGCATCACTCGCGAAAAGGTTAACGGTTCCACTGTCAATGTTGGCATCAACCCCTCGAAGGTCGTGATTACGAAGCTCAGGCTGGACAAGGACCGCAAGTCACTTCTGGATCGTAAAGGCAAGGGCCGCGCCGCCTCTGATAAGGACAAGGGTACCAAGTTCACCGCCGAGGATATCATGCAGAGCGTCGACTAA

Coding sequence (CDS)

ATGAAGTACAATCCTAGGGTTTCCAGTTCCCGCCGCAAGAGCCGTAAGGCTCATTTTTCGGCGCCGTCGAGCGTTCGTCGGGTTATTATGAGTGCTCCTCTCTCGACTGACCTCCGGTCAAAGTACAACGTCCGATCCATGCCGATTCGGAAGGATGATGAGGTCCAAGTTGTCCGTGGAACTTACAAGGGTCGGGAGGGCAAGGTAGTGCAGGTGTATCGTAAAAAGTGGGTTATCCACATCGAGCGCATCACTCGCGAAAAGGTTAACGGTTCCACTGTCAATGTTGGCATCAACCCCTCGAAGGTCGTGATTACGAAGCTCAGGCTGGACAAGGACCGCAAGTCACTTCTGGATCGTAAAGGCAAGGGCCGCGCCGCCTCTGATAAGGACAAGGGTACCAAGTTCACCGCCGAGGATATCATGCAGAGCGTCGACTAA

Protein sequence

MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRGTYKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDRKGKGRAASDKDKGTKFTAEDIMQSVD
Homology
[Close]
BLAST of Cp4.1LG10g02120 vs. ExPASy Swiss-Prot
Match: P51414 (60S ribosomal protein L26-1 OS=Arabidopsis thaliana OX=3702 GN=RPL26A PE=2 SV=2)

HSP 1 Score: 252.7 bits (644), Expect = 2.6e-66
Identity = 128/146 (87.67%), Postives = 141/146 (96.58%), Query Frame = 0 

Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60
           MKYNPRV+SSRRK+RKAHF+A SS RRVIMS+PLSTDLR KYNVRSMPIRKDDEVQ+VRG
Sbjct: 1   MKYNPRVTSSRRKNRKAHFTASSSERRVIMSSPLSTDLRQKYNVRSMPIRKDDEVQIVRG 60

Query: 61  TYKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120
           TYKGREGKVVQVYR+KWVIHIERITREKVNG+TVNVGI PSKVVITKLRLDKDRKSLL+R
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGTTVNVGIQPSKVVITKLRLDKDRKSLLER 120

Query: 121 KGKGRAASDKDKGTKFTAEDIMQSVD 147
           K KGRAA+DK+KGTKFT+ED+MQ+VD
Sbjct: 121 KAKGRAAADKEKGTKFTSEDVMQNVD 146

[Close]
BLAST of Cp4.1LG10g02120 vs. ExPASy Swiss-Prot
Match: Q9FJX2 (60S ribosomal protein L26-2 OS=Arabidopsis thaliana OX=3702 GN=RPL26B PE=2 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 9.2e-64
Identity = 122/146 (83.56%), Postives = 141/146 (96.58%), Query Frame = 0 

Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60
           MK+NPRVSSSRRK+RKAHF+APSSVRRV+MS+PLS DLR+K+NVRSMPIRKDDEVQVVRG
Sbjct: 1   MKFNPRVSSSRRKNRKAHFTAPSSVRRVLMSSPLSKDLRNKHNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120
           T+KGREGKV+QVYR+KWVIHIERITREKVNGSTVNVG+N S V+ITKLRLDKDRKSLL+R
Sbjct: 61  TFKGREGKVMQVYRRKWVIHIERITREKVNGSTVNVGVNASNVMITKLRLDKDRKSLLER 120

Query: 121 KGKGRAASDKDKGTKFTAEDIMQSVD 147
           K  GRAA+DK+KGTKF+AED+M++VD
Sbjct: 121 KANGRAAADKEKGTKFSAEDVMENVD 146

[Close]
BLAST of Cp4.1LG10g02120 vs. ExPASy Swiss-Prot
Match: Q39411 (60S ribosomal protein L26 OS=Brassica campestris OX=3711 GN=RPL26 PE=2 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 1.6e-60
Identity = 118/145 (81.38%), Postives = 134/145 (92.41%), Query Frame = 0 

Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60
           MKYNPRV+SSRR++RK HF+A SS RRV MS+PLSTDLR KYNVRSMPIRKDDE Q+VRG
Sbjct: 1   MKYNPRVTSSRRRNRKPHFTASSSERRVXMSSPLSTDLRQKYNVRSMPIRKDDEXQIVRG 60

Query: 61  TYKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120
           TYKGREGK+ QVYR+K VIHIER+TREKVNG+TVNVG+ P+KVVITKLRLDKDRKSLL+R
Sbjct: 61  TYKGREGKLXQVYRRKXVIHIERLTREKVNGTTVNVGVQPTKVVITKLRLDKDRKSLLER 120

Query: 121 KGKGRAASDKDKGTKFTAEDIMQSV 146
           K KGRAA+DKDKGTKFTA D+MQ+V
Sbjct: 121 KAKGRAAADKDKGTKFTAVDVMQNV 145

[Close]
BLAST of Cp4.1LG10g02120 vs. ExPASy Swiss-Prot
Match: P61257 (60S ribosomal protein L26 OS=Bos taurus OX=9913 GN=RPL26 PE=2 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 1.6e-44
Identity = 98/142 (69.01%), Postives = 119/142 (83.80%), Query Frame = 0 

Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60
           MK+NP V+S R K+RK HF+APS +RR IMS+PLS +LR KYNVRSMPIRKDDEVQVVRG
Sbjct: 1   MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGRE-GKVVQVYRKKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLD 120
            YKG++ GKVVQVYRKK+VI+IER+ REK NG+TV+VGI+PSKVVIT+L+LDKDRK +L+
Sbjct: 61  HYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILE 120

Query: 121 RKGKGRAASDKDKGTKFTAEDI 142
           RK K R    K+KG K+  E I
Sbjct: 121 RKAKSRQVG-KEKG-KYKEETI 140

[Close]
BLAST of Cp4.1LG10g02120 vs. ExPASy Swiss-Prot
Match: P61254 (60S ribosomal protein L26 OS=Homo sapiens OX=9606 GN=RPL26 PE=1 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 1.6e-44
Identity = 98/142 (69.01%), Postives = 119/142 (83.80%), Query Frame = 0 

Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60
           MK+NP V+S R K+RK HF+APS +RR IMS+PLS +LR KYNVRSMPIRKDDEVQVVRG
Sbjct: 1   MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGRE-GKVVQVYRKKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLD 120
            YKG++ GKVVQVYRKK+VI+IER+ REK NG+TV+VGI+PSKVVIT+L+LDKDRK +L+
Sbjct: 61  HYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILE 120

Query: 121 RKGKGRAASDKDKGTKFTAEDI 142
           RK K R    K+KG K+  E I
Sbjct: 121 RKAKSRQVG-KEKG-KYKEETI 140

[Close]
BLAST of Cp4.1LG10g02120 vs. NCBI nr
Match: XP_022950899.1 (60S ribosomal protein L26-1 [Cucurbita moschata] >XP_022978626.1 60S ribosomal protein L26-1 [Cucurbita maxima] >XP_023543127.1 60S ribosomal protein L26-1 [Cucurbita pepo subsp. pepo] >KAG6604126.1 60S ribosomal protein L26-1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7034289.1 60S ribosomal protein L26-1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 276 bits (707), Expect = 1.92e-93
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0 

Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60
           MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG
Sbjct: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120
           TYKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120

Query: 121 KGKGRAASDKDKGTKFTAEDIMQSVD 146
           KGKGRAASDKDKGTKFTAEDIMQSVD
Sbjct: 121 KGKGRAASDKDKGTKFTAEDIMQSVD 146

[Close]
BLAST of Cp4.1LG10g02120 vs. NCBI nr
Match: XP_004141862.1 (60S ribosomal protein L26-1 [Cucumis sativus] >XP_008440392.1 PREDICTED: 60S ribosomal protein L26-1 [Cucumis melo] >KAA0036413.1 Ribosomal protein L26/L24P, eukaryotic/archaeal [Cucumis melo var. makuwa] >KGN48613.1 hypothetical protein Csa_003604 [Cucumis sativus] >TYK12809.1 Ribosomal protein L26/L24P, eukaryotic/archaeal [Cucumis melo var. makuwa])

HSP 1 Score: 271 bits (694), Expect = 1.85e-91
Identity = 142/146 (97.26%), Postives = 145/146 (99.32%), Query Frame = 0 

Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60
           MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG
Sbjct: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120
           TYKGREGKVVQVYR+KW+IHIERITREKVNGSTVNVGI PSKVVITKLRLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVVITKLRLDKDRKSLLDR 120

Query: 121 KGKGRAASDKDKGTKFTAEDIMQSVD 146
           KGKGRAA+DKDKGTKFTAEDIMQSVD
Sbjct: 121 KGKGRAAADKDKGTKFTAEDIMQSVD 146

[Close]
BLAST of Cp4.1LG10g02120 vs. NCBI nr
Match: XP_022963400.1 (60S ribosomal protein L26-1-like [Cucurbita moschata] >XP_023003724.1 60S ribosomal protein L26-1-like [Cucurbita maxima] >XP_023517131.1 60S ribosomal protein L26-1-like [Cucurbita pepo subsp. pepo] >KAG6594976.1 60S ribosomal protein L26-1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7026934.1 60S ribosomal protein L26-1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 271 bits (692), Expect = 3.72e-91
Identity = 142/146 (97.26%), Postives = 145/146 (99.32%), Query Frame = 0 

Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60
           MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLS DLRSKYNVRSMPIRKDDEVQVVRG
Sbjct: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSNDLRSKYNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120
           TYKGREGKVVQVYR+KWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120

Query: 121 KGKGRAASDKDKGTKFTAEDIMQSVD 146
           KGKGRAA+DKDKGTKF+AEDIMQSVD
Sbjct: 121 KGKGRAAADKDKGTKFSAEDIMQSVD 146

[Close]
BLAST of Cp4.1LG10g02120 vs. NCBI nr
Match: XP_022132426.1 (60S ribosomal protein L26-1 [Momordica charantia])

HSP 1 Score: 270 bits (689), Expect = 1.07e-90
Identity = 141/146 (96.58%), Postives = 145/146 (99.32%), Query Frame = 0 

Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60
           MKYNPRVSSSRRK+RKAHFSAPSSVRRVIMS+PLSTDLRSKYNVRSMPIRKDDEVQVVRG
Sbjct: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRVIMSSPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120
           TYKGREGKVVQVYR+KWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120

Query: 121 KGKGRAASDKDKGTKFTAEDIMQSVD 146
           K KGRAA+DKDKGTKFTAEDIMQSVD
Sbjct: 121 KAKGRAAADKDKGTKFTAEDIMQSVD 146

[Close]
BLAST of Cp4.1LG10g02120 vs. NCBI nr
Match: XP_038880918.1 (60S ribosomal protein L26-1 [Benincasa hispida])

HSP 1 Score: 269 bits (688), Expect = 1.52e-90
Identity = 141/146 (96.58%), Postives = 145/146 (99.32%), Query Frame = 0 

Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60
           MKYNPRVSSSRRKSRKAHF+APSSVRRVIMSAPLS+DLRSKYNVRSMPIRKDDEVQVVRG
Sbjct: 1   MKYNPRVSSSRRKSRKAHFTAPSSVRRVIMSAPLSSDLRSKYNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120
           TYKGREGKVVQVYR+KWVIHIERITREKVNGSTVNVGI PSKVVITKLRLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGIKPSKVVITKLRLDKDRKSLLDR 120

Query: 121 KGKGRAASDKDKGTKFTAEDIMQSVD 146
           KGKGRAA+DKDKGTKFTAEDIMQSVD
Sbjct: 121 KGKGRAAADKDKGTKFTAEDIMQSVD 146

[Close]
BLAST of Cp4.1LG10g02120 vs. ExPASy TrEMBL
Match: A0A6J1INB1 (60S ribosomal protein L26-1 OS=Cucurbita maxima OX=3661 GN=LOC111478547 PE=3 SV=1)

HSP 1 Score: 276 bits (707), Expect = 9.30e-94
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0 

Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60
           MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG
Sbjct: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120
           TYKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120

Query: 121 KGKGRAASDKDKGTKFTAEDIMQSVD 146
           KGKGRAASDKDKGTKFTAEDIMQSVD
Sbjct: 121 KGKGRAASDKDKGTKFTAEDIMQSVD 146

[Close]
BLAST of Cp4.1LG10g02120 vs. ExPASy TrEMBL
Match: A0A6J1GH60 (60S ribosomal protein L26-1 OS=Cucurbita moschata OX=3662 GN=LOC111453858 PE=3 SV=1)

HSP 1 Score: 276 bits (707), Expect = 9.30e-94
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0 

Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60
           MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG
Sbjct: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120
           TYKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120

Query: 121 KGKGRAASDKDKGTKFTAEDIMQSVD 146
           KGKGRAASDKDKGTKFTAEDIMQSVD
Sbjct: 121 KGKGRAASDKDKGTKFTAEDIMQSVD 146

[Close]
BLAST of Cp4.1LG10g02120 vs. ExPASy TrEMBL
Match: A0A5D3CR35 (Ribosomal protein L26/L24P, eukaryotic/archaeal OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G004010 PE=3 SV=1)

HSP 1 Score: 271 bits (694), Expect = 8.94e-92
Identity = 142/146 (97.26%), Postives = 145/146 (99.32%), Query Frame = 0 

Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60
           MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG
Sbjct: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120
           TYKGREGKVVQVYR+KW+IHIERITREKVNGSTVNVGI PSKVVITKLRLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVVITKLRLDKDRKSLLDR 120

Query: 121 KGKGRAASDKDKGTKFTAEDIMQSVD 146
           KGKGRAA+DKDKGTKFTAEDIMQSVD
Sbjct: 121 KGKGRAAADKDKGTKFTAEDIMQSVD 146

[Close]
BLAST of Cp4.1LG10g02120 vs. ExPASy TrEMBL
Match: A0A0A0KGI0 (KOW domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G495670 PE=3 SV=1)

HSP 1 Score: 271 bits (694), Expect = 8.94e-92
Identity = 142/146 (97.26%), Postives = 145/146 (99.32%), Query Frame = 0 

Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60
           MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG
Sbjct: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120
           TYKGREGKVVQVYR+KW+IHIERITREKVNGSTVNVGI PSKVVITKLRLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVVITKLRLDKDRKSLLDR 120

Query: 121 KGKGRAASDKDKGTKFTAEDIMQSVD 146
           KGKGRAA+DKDKGTKFTAEDIMQSVD
Sbjct: 121 KGKGRAAADKDKGTKFTAEDIMQSVD 146

[Close]
BLAST of Cp4.1LG10g02120 vs. ExPASy TrEMBL
Match: A0A1S3B106 (60S ribosomal protein L26-1 OS=Cucumis melo OX=3656 GN=LOC103484854 PE=3 SV=1)

HSP 1 Score: 271 bits (694), Expect = 8.94e-92
Identity = 142/146 (97.26%), Postives = 145/146 (99.32%), Query Frame = 0 

Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60
           MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG
Sbjct: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120
           TYKGREGKVVQVYR+KW+IHIERITREKVNGSTVNVGI PSKVVITKLRLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVVITKLRLDKDRKSLLDR 120

Query: 121 KGKGRAASDKDKGTKFTAEDIMQSVD 146
           KGKGRAA+DKDKGTKFTAEDIMQSVD
Sbjct: 121 KGKGRAAADKDKGTKFTAEDIMQSVD 146

[Close]
BLAST of Cp4.1LG10g02120 vs. TAIR 10
Match: AT3G49910.1 (Translation protein SH3-like family protein )

HSP 1 Score: 252.7 bits (644), Expect = 1.8e-67
Identity = 128/146 (87.67%), Postives = 141/146 (96.58%), Query Frame = 0 

Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60
           MKYNPRV+SSRRK+RKAHF+A SS RRVIMS+PLSTDLR KYNVRSMPIRKDDEVQ+VRG
Sbjct: 1   MKYNPRVTSSRRKNRKAHFTASSSERRVIMSSPLSTDLRQKYNVRSMPIRKDDEVQIVRG 60

Query: 61  TYKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120
           TYKGREGKVVQVYR+KWVIHIERITREKVNG+TVNVGI PSKVVITKLRLDKDRKSLL+R
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGTTVNVGIQPSKVVITKLRLDKDRKSLLER 120

Query: 121 KGKGRAASDKDKGTKFTAEDIMQSVD 147
           K KGRAA+DK+KGTKFT+ED+MQ+VD
Sbjct: 121 KAKGRAAADKEKGTKFTSEDVMQNVD 146

[Close]
BLAST of Cp4.1LG10g02120 vs. TAIR 10
Match: AT5G67510.1 (Translation protein SH3-like family protein )

HSP 1 Score: 244.2 bits (622), Expect = 6.5e-65
Identity = 122/146 (83.56%), Postives = 141/146 (96.58%), Query Frame = 0 

Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60
           MK+NPRVSSSRRK+RKAHF+APSSVRRV+MS+PLS DLR+K+NVRSMPIRKDDEVQVVRG
Sbjct: 1   MKFNPRVSSSRRKNRKAHFTAPSSVRRVLMSSPLSKDLRNKHNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120
           T+KGREGKV+QVYR+KWVIHIERITREKVNGSTVNVG+N S V+ITKLRLDKDRKSLL+R
Sbjct: 61  TFKGREGKVMQVYRRKWVIHIERITREKVNGSTVNVGVNASNVMITKLRLDKDRKSLLER 120

Query: 121 KGKGRAASDKDKGTKFTAEDIMQSVD 147
           K  GRAA+DK+KGTKF+AED+M++VD
Sbjct: 121 KANGRAAADKEKGTKFSAEDVMENVD 146

The following BLAST results are available for this feature:
BLAST of Cp4.1LG10g02120 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P514142.6e-6687.6760S ribosomal protein L26-1 OS=Arabidopsis thaliana OX=3702 GN=RPL26A PE=2 SV=2[more]
Q9FJX29.2e-6483.5660S ribosomal protein L26-2 OS=Arabidopsis thaliana OX=3702 GN=RPL26B PE=2 SV=1[more]
Q394111.6e-6081.3860S ribosomal protein L26 OS=Brassica campestris OX=3711 GN=RPL26 PE=2 SV=1[more]
P612571.6e-4469.0160S ribosomal protein L26 OS=Bos taurus OX=9913 GN=RPL26 PE=2 SV=1[more]
P612541.6e-4469.0160S ribosomal protein L26 OS=Homo sapiens OX=9606 GN=RPL26 PE=1 SV=1[more]
BLAST of Cp4.1LG10g02120 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022950899.11.92e-93100.0060S ribosomal protein L26-1 [Cucurbita moschata] >XP_022978626.1 60S ribosomal p... [more]
XP_004141862.11.85e-9197.2660S ribosomal protein L26-1 [Cucumis sativus] >XP_008440392.1 PREDICTED: 60S rib... [more]
XP_022963400.13.72e-9197.2660S ribosomal protein L26-1-like [Cucurbita moschata] >XP_023003724.1 60S riboso... [more]
XP_022132426.11.07e-9096.5860S ribosomal protein L26-1 [Momordica charantia][more]
XP_038880918.11.52e-9096.5860S ribosomal protein L26-1 [Benincasa hispida][more]
BLAST of Cp4.1LG10g02120 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1INB19.30e-94100.0060S ribosomal protein L26-1 OS=Cucurbita maxima OX=3661 GN=LOC111478547 PE=3 SV=... [more]
A0A6J1GH609.30e-94100.0060S ribosomal protein L26-1 OS=Cucurbita moschata OX=3662 GN=LOC111453858 PE=3 S... [more]
A0A5D3CR358.94e-9297.26Ribosomal protein L26/L24P, eukaryotic/archaeal OS=Cucumis melo var. makuwa OX=1... [more]
A0A0A0KGI08.94e-9297.26KOW domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G495670 PE=3 SV... [more]
A0A1S3B1068.94e-9297.2660S ribosomal protein L26-1 OS=Cucumis melo OX=3656 GN=LOC103484854 PE=3 SV=1[more]
BLAST of Cp4.1LG10g02120 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G49910.11.8e-6787.67Translation protein SH3-like family protein [more]
AT5G67510.16.5e-6583.56Translation protein SH3-like family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005824KOWSMARTSM00739kow_9coord: 48..75
e-value: 4.5E-6
score: 36.2
IPR005824KOWPFAMPF00467KOWcoord: 51..82
e-value: 9.6E-10
score: 38.1
IPR014722Ribosomal protein L2, domain 2GENE3D2.30.30.30coord: 1..144
e-value: 7.2E-57
score: 193.4
IPR005756Ribosomal protein L26/L24, eukaryotic/archaealTIGRFAMTIGR01080TIGR01080coord: 8..122
e-value: 1.7E-51
score: 171.4
IPR005756Ribosomal protein L26/L24, eukaryotic/archaealPFAMPF16906Ribosomal_L26coord: 8..121
e-value: 5.2E-38
score: 129.8
IPR005756Ribosomal protein L26/L24, eukaryotic/archaealPANTHERPTHR1114360S RIBOSOMAL PROTEIN L26 FAMILY MEMBERcoord: 1..146
IPR005756Ribosomal protein L26/L24, eukaryotic/archaealHAMAPMF_01326_ARibosomal_L24_Acoord: 9..121
score: 20.585115
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 119..146
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 119..137
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..22
NoneNo IPR availablePANTHERPTHR11143:SF1660S RIBOSOMAL PROTEIN L26-1coord: 1..146
IPR005825Ribosomal protein L24/L26, conserved sitePROSITEPS01108RIBOSOMAL_L24coord: 52..69
IPR041988Ribosomal protein L26/L24, KOW domainCDDcd06089KOW_RPL26coord: 52..105
e-value: 1.92986E-15
score: 64.4582
IPR008991Translation protein SH3-like domain superfamilySUPERFAMILY50104Translation proteins SH3-like domaincoord: 8..125

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG10g02120.1Cp4.1LG10g02120.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0002181 cytoplasmic translation
biological_process GO:0042273 ribosomal large subunit biogenesis
biological_process GO:0006412 translation
cellular_component GO:0022625 cytosolic large ribosomal subunit
cellular_component GO:0015934 large ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome