Cp4.1LG10g01780 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG10g01780
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	transcription factor bHLH25-like
Location	Cp4.1LG10: 3039860 .. 3040767 (-)
RNA-Seq Expression	Cp4.1LG10g01780
Synteny	Cp4.1LG10g01780

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAATGATGGAATCTGCATATCAACACGAGATCACCAATTATCCCCATGATTACACACTCGATGAGCTCAATTTTCCGACCAATTTTCCGGCGACCGAAAAACTCATCACTTCGGTCCAACTTGATTCTATTTCCTCTTCCCAGTTTATTTCCTTTGGGGATTCACCTGAAATTGAGAAGCTTGATTGTGCGATGGGTAAGGACGAGAGAGGAAAAGATTTGTCGTTCATAATACCCCAAAGTTTGGATGTGAATCAAAATAGGTATGTAATTGGATATGAAGAAGGCCATGAAATTAAGAAGCGTGCAACAATTGGTAGAACTTCAGGAAATGGTCAACAACATGTTATAGCTGAGAGAAGACGAAGAGAGAAGCTAAGCCAAAGCTTTGCTGCTCTTTCAGCTCTAATCCCCGGCCTCAACAAGGTAAAAATTTGCTCATAATATCCAATTGCTAAGAACAAAAAAGGGTTAATCTTAGATTTTGAATTCAATGTGGTTTAACCAAGTTTTAAGGATTTTGAATTGATTTGGTAAGTTCATGTGAAATATGAAAGGGTTAATATTTATGGTGACAGACGGACAAGGCTTCAGTGCTTGGTGGAGCTATCAAGTACGTGAAGGATCTTCAAGAACGTGTCAAATGGGCTGAGGAAGAAGCAGGAGATGAGGAGGGGAGAGTAATTAAATCAGTTCCTAACATAGAAACAAGGGTTTTGGAGAGTGATGTTCTTGTGAGAATTCATTGCAAGAAACAAAAAGGCTGTTTTTCAAACATAATAACCCAAATTCAGATGCTTAAGCTAACCATTGTGAATAGCTGCGTTTTGCCATTTGGTCATTCCAGACTTGATATAACCATTATTGCTCAGGTCAAATTCCTTTCTCTCTATTATCACCAAACATAA

mRNA sequence

GAAATGATGGAATCTGCATATCAACACGAGATCACCAATTATCCCCATGATTACACACTCGATGAGCTCAATTTTCCGACCAATTTTCCGGCGACCGAAAAACTCATCACTTCGGTCCAACTTGATTCTATTTCCTCTTCCCAGTTTATTTCCTTTGGGGATTCACCTGAAATTGAGAAGCTTGATTGTGCGATGGGTAAGGACGAGAGAGGAAAAGATTTGTCGTTCATAATACCCCAAAGTTTGGATGTGAATCAAAATAGGTATGTAATTGGATATGAAGAAGGCCATGAAATTAAGAAGCGTGCAACAATTGGTAGAACTTCAGGAAATGGTCAACAACATGTTATAGCTGAGAGAAGACGAAGAGAGAAGCTAAGCCAAAGCTTTGCTGCTCTTTCAGCTCTAATCCCCGGCCTCAACAAGACGGACAAGGCTTCAGTGCTTGGTGGAGCTATCAAGTACGTGAAGGATCTTCAAGAACGTGTCAAATGGGCTGAGGAAGAAGCAGGAGATGAGGAGGGGAGAGTAATTAAATCAGTTCCTAACATAGAAACAAGGGTTTTGGAGAGTGATGTTCTTGTGAGAATTCATTGCAAGAAACAAAAAGGCTGTTTTTCAAACATAATAACCCAAATTCAGATGCTTAAGCTAACCATTGTGAATAGCTGCGTTTTGCCATTTGGTCATTCCAGACTTGATATAACCATTATTGCTCAGGTCAAATTCCTTTCTCTCTATTATCACCAAACATAA

Coding sequence (CDS)

GAAATGATGGAATCTGCATATCAACACGAGATCACCAATTATCCCCATGATTACACACTCGATGAGCTCAATTTTCCGACCAATTTTCCGGCGACCGAAAAACTCATCACTTCGGTCCAACTTGATTCTATTTCCTCTTCCCAGTTTATTTCCTTTGGGGATTCACCTGAAATTGAGAAGCTTGATTGTGCGATGGGTAAGGACGAGAGAGGAAAAGATTTGTCGTTCATAATACCCCAAAGTTTGGATGTGAATCAAAATAGGTATGTAATTGGATATGAAGAAGGCCATGAAATTAAGAAGCGTGCAACAATTGGTAGAACTTCAGGAAATGGTCAACAACATGTTATAGCTGAGAGAAGACGAAGAGAGAAGCTAAGCCAAAGCTTTGCTGCTCTTTCAGCTCTAATCCCCGGCCTCAACAAGACGGACAAGGCTTCAGTGCTTGGTGGAGCTATCAAGTACGTGAAGGATCTTCAAGAACGTGTCAAATGGGCTGAGGAAGAAGCAGGAGATGAGGAGGGGAGAGTAATTAAATCAGTTCCTAACATAGAAACAAGGGTTTTGGAGAGTGATGTTCTTGTGAGAATTCATTGCAAGAAACAAAAAGGCTGTTTTTCAAACATAATAACCCAAATTCAGATGCTTAAGCTAACCATTGTGAATAGCTGCGTTTTGCCATTTGGTCATTCCAGACTTGATATAACCATTATTGCTCAGGTCAAATTCCTTTCTCTCTATTATCACCAAACATAA

Protein sequence

EMMESAYQHEITNYPHDYTLDELNFPTNFPATEKLITSVQLDSISSSQFISFGDSPEIEKLDCAMGKDERGKDLSFIIPQSLDVNQNRYVIGYEEGHEIKKRATIGRTSGNGQQHVIAERRRREKLSQSFAALSALIPGLNKTDKASVLGGAIKYVKDLQERVKWAEEEAGDEEGRVIKSVPNIETRVLESDVLVRIHCKKQKGCFSNIITQIQMLKLTIVNSCVLPFGHSRLDITIIAQVKFLSLYYHQT

Homology

[Close]

BLAST of Cp4.1LG10g01780 vs. ExPASy Swiss-Prot
Match: Q9T072 (Transcription factor bHLH25 OS=Arabidopsis thaliana OX=3702 GN=BHLH25 PE=2 SV=2)

HSP 1 Score: 120.2 bits (300), Expect = 3.4e-26
Identity = 74/168 (44.05%), Postives = 97/168 (57.74%), Query Frame = 0


Query: 100 KKRATIGRTSGNGQQHVIAERRRREKLSQSFAALSALIPGLNKTDKASVLGGAIKYVKDL 159
           K+     R   N Q H+IAER+RREKL+Q F ALSAL+PGL K DKASVLG A+K++K L
Sbjct: 138 KRAQPFSRNQSNAQDHIIAERKRREKLTQRFVALSALVPGLKKMDKASVLGDALKHIKYL 197

Query: 160 QERVKWAEEEAGD---------------------------EEGRVIKSVPNIETRVLESD 219
           QERV   EE+  +                           E+G     +P IE R  + D
Sbjct: 198 QERVGELEEQKKERRLESMVLVKKSKLILDDNNQSFSSSCEDGFSDLDLPEIEVRFSDED 257

Query: 220 VLVRIHCKKQKGCFSNIITQIQMLKLTIVNSCVLPFGHSRLDITIIAQ 241
           VL++I C+KQKG  + I+ +I+ L + I NS VL FG + LDITIIA+
Sbjct: 258 VLIKILCEKQKGHLAKIMAEIEKLHILITNSSVLNFGPT-LDITIIAK 304

[Close]

BLAST of Cp4.1LG10g01780 vs. ExPASy Swiss-Prot
Match: Q1PF17 (Transcription factor bHLH18 OS=Arabidopsis thaliana OX=3702 GN=BHLH18 PE=1 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 5.8e-26
Identity = 77/171 (45.03%), Postives = 102/171 (59.65%), Query Frame = 0


Query: 100 KKRATIGRTSGNGQQHVIAERRRREKLSQSFAALSALIPGLNKTDKASVLGGAIKYVKDL 159
           K+  ++ R+  N Q H++AER+RREKL+Q F ALSALIPGL K DKASVLG AIK++K L
Sbjct: 112 KRAQSLTRSQSNAQDHILAERKRREKLTQRFVALSALIPGLKKMDKASVLGDAIKHIKYL 171

Query: 160 QERVKWAEEEAGDE--EGRVI----------------------------KSVPNIETRVL 219
           QE VK  EE+  ++  E  V+                             ++P IE RV 
Sbjct: 172 QESVKEYEEQKKEKTMESVVLVKKSSLVLDENHQPSSSSSSDGNRNSSSSNLPEIEVRVS 231

Query: 220 ESDVLVRIHCKKQKGCFSNIITQIQMLKLTIVNSCVLPFGHSRLDITIIAQ 241
             DVL++I C+KQKG    I+ +I+ L L+I NS VLPFG +  DI+IIAQ
Sbjct: 232 GKDVLIKILCEKQKGNVIKIMGEIEKLGLSITNSNVLPFGPT-FDISIIAQ 281

[Close]

BLAST of Cp4.1LG10g01780 vs. ExPASy Swiss-Prot
Match: Q1PF16 (Transcription factor bHLH19 OS=Arabidopsis thaliana OX=3702 GN=BHLH19 PE=1 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.9e-25
Identity = 66/157 (42.04%), Postives = 96/157 (61.15%), Query Frame = 0


Query: 113 QQHVIAERRRREKLSQSFAALSALIPGLNKTDKASVLGGAIKYVKDLQERVKWAEEEAG- 172
           ++HV+AER+RREKLS+ F ALSAL+PGL K DK ++L  AI  +K LQE+++  +EE   
Sbjct: 118 KEHVLAERKRREKLSEKFIALSALLPGLKKADKVTILDDAISRMKQLQEQLRTLKEEKEA 177

Query: 173 -----------------DEEGRVI----------KSVPNIETRVLESDVLVRIHCKKQKG 232
                            DEE  +           +++P IE ++ ++D+L+RI C+K KG
Sbjct: 178 TRQMESMILVKKSKVFFDEEPNLSCSPSVHIEFDQALPEIEAKISQNDILIRILCEKSKG 237

Query: 233 CFSNIITQIQMLKLTIVNSCVLPFGHSRLDITIIAQV 242
           C  NI+  I+  +L I NS VLPFG S LDIT++AQ+
Sbjct: 238 CMINILNTIENFQLRIENSIVLPFGDSTLDITVLAQM 274

[Close]

BLAST of Cp4.1LG10g01780 vs. ExPASy Swiss-Prot
Match: Q8S3F1 (Transcription factor NAI1 OS=Arabidopsis thaliana OX=3702 GN=NAI1 PE=2 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.9e-25
Identity = 67/169 (39.64%), Postives = 97/169 (57.40%), Query Frame = 0


Query: 113 QQHVIAERRRREKLSQSFAALSALIPGLNKTDKASVLGGAIKYVKDLQERVKWAEEE--- 172
           ++HV+AER+RR+KL++   ALSAL+PGL KTDKA+VL  AIK++K LQERVK  EEE   
Sbjct: 131 KEHVLAERKRRQKLNERLIALSALLPGLKKTDKATVLEDAIKHLKQLQERVKKLEEERVV 190

Query: 173 -------------------------------------AGDEEGRVIKSVPNIETRVLESD 232
                                                + DE     +++P IE RV + D
Sbjct: 191 TKKMDQSIILVKRSQVYLDDDSSSYSSTCSAASPLSSSSDEVSIFKQTMPMIEARVSDRD 250

Query: 233 VLVRIHCKKQKGCFSNIITQIQMLKLTIVNSCVLPFGHSRLDITIIAQV 242
           +L+R+HC+K KGC   I++ ++  +L +VNS  LPFG+S L ITI+ ++
Sbjct: 251 LLIRVHCEKNKGCMIKILSSLEKFRLEVVNSFTLPFGNSTLVITILTKM 299

[Close]

BLAST of Cp4.1LG10g01780 vs. ExPASy Swiss-Prot
Match: Q9ZPY8 (Transcription factor ABA-INDUCIBLE bHLH-TYPE OS=Arabidopsis thaliana OX=3702 GN=AIB PE=2 SV=2)

HSP 1 Score: 75.1 bits (183), Expect = 1.3e-12
Identity = 41/103 (39.81%), Postives = 65/103 (63.11%), Query Frame = 0


Query: 106 GRTSGNGQQ----HVIAERRRREKLSQSFAALSALIPGLNKTDKASVLGGAIKYVKDLQE 165
           GR   NG++    HV AER+RREKL+Q F AL +++P ++K DKAS+LG AI Y+K+LQE
Sbjct: 383 GRKPANGREEPLNHVEAERQRREKLNQRFYALRSVVPNISKMDKASLLGDAISYIKELQE 442

Query: 166 RVKWAEEE-------AGDEEGRVIKSVPNIETRVLESDVLVRI 198
           +VK  E+E         +     ++  P ++ + +  +V+VR+
Sbjct: 443 KVKIMEDERVGTDKSLSESNTITVEESPEVDIQAMNEEVVVRV 485

[Close]

BLAST of Cp4.1LG10g01780 vs. NCBI nr
Match: XP_022950748.1 (transcription factor bHLH25-like [Cucurbita moschata])

HSP 1 Score: 451 bits (1161), Expect = 8.41e-159
Identity = 229/242 (94.63%), Postives = 236/242 (97.52%), Query Frame = 0


Query: 1   EMMESAYQHEITNYPHDYTLDELNFPTNFPATEKLITSVQLDSISSSQFISFGDSPEIEK 60
           EMM+ AYQHEITNYPHDYTLDELNFPTNFPATEKL+TSVQLDSISSSQFISFGDSPEIEK
Sbjct: 13  EMMDCAYQHEITNYPHDYTLDELNFPTNFPATEKLLTSVQLDSISSSQFISFGDSPEIEK 72

Query: 61  LDCAMGKDERGKDLSFIIPQSLDVNQNRYVIGYEEGHEIKKRATIGRTSGNGQQHVIAER 120
           LDCAMGKDERGKDLSFIIPQSLDVNQNRY IGYEEGH+I KRATIGRTSGNGQQHVIAER
Sbjct: 73  LDCAMGKDERGKDLSFIIPQSLDVNQNRYAIGYEEGHDITKRATIGRTSGNGQQHVIAER 132

Query: 121 RRREKLSQSFAALSALIPGLNKTDKASVLGGAIKYVKDLQERVKWAEEEAGDEEGRVIKS 180
           RRREKLSQSFAALSALIPGLNKTDKASVLGGAIKYVK+LQERVKWAEEEAGDEEGRVIKS
Sbjct: 133 RRREKLSQSFAALSALIPGLNKTDKASVLGGAIKYVKELQERVKWAEEEAGDEEGRVIKS 192

Query: 181 VPNIETRVLESDVLVRIHCKKQKGCFSNIITQIQMLKLTIVNSCVLPFGHSRLDITIIAQ 240
           VP IETRVLE DVLVRIHCKKQKGCFSNI+TQIQMLKLTIVNS VLPFGHSRLDITIIAQ
Sbjct: 193 VPKIETRVLERDVLVRIHCKKQKGCFSNILTQIQMLKLTIVNSSVLPFGHSRLDITIIAQ 252

Query: 241 VK 242
           ++
Sbjct: 253 ME 254

[Close]

BLAST of Cp4.1LG10g01780 vs. NCBI nr
Match: KAG6604086.1 (Transcription factor basic helix-loop-helix 25, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 451 bits (1160), Expect = 1.19e-158
Identity = 229/242 (94.63%), Postives = 236/242 (97.52%), Query Frame = 0


Query: 1   EMMESAYQHEITNYPHDYTLDELNFPTNFPATEKLITSVQLDSISSSQFISFGDSPEIEK 60
           EMM+ AYQHEITNYPHDYTLDELNFPTN PATEKLITSVQLDSISSSQFISFGDSPEIEK
Sbjct: 13  EMMDCAYQHEITNYPHDYTLDELNFPTNLPATEKLITSVQLDSISSSQFISFGDSPEIEK 72

Query: 61  LDCAMGKDERGKDLSFIIPQSLDVNQNRYVIGYEEGHEIKKRATIGRTSGNGQQHVIAER 120
           LDCAMGKDERGKDLSFIIPQS DVNQNRYVIGYEEGH+IKKRATIGRTSGNGQQHVIAER
Sbjct: 73  LDCAMGKDERGKDLSFIIPQSFDVNQNRYVIGYEEGHDIKKRATIGRTSGNGQQHVIAER 132

Query: 121 RRREKLSQSFAALSALIPGLNKTDKASVLGGAIKYVKDLQERVKWAEEEAGDEEGRVIKS 180
           RRREKLSQSFAALSALIPGLNKTDKASVLGGAIKYVK+LQERVKWAEEEAGDEEGRVIKS
Sbjct: 133 RRREKLSQSFAALSALIPGLNKTDKASVLGGAIKYVKELQERVKWAEEEAGDEEGRVIKS 192

Query: 181 VPNIETRVLESDVLVRIHCKKQKGCFSNIITQIQMLKLTIVNSCVLPFGHSRLDITIIAQ 240
           VP IETRVLE DVLVRIHCKKQKGCFSNI+TQIQMLKLTIVN+ VLPFGHSRLDITIIAQ
Sbjct: 193 VPKIETRVLERDVLVRIHCKKQKGCFSNILTQIQMLKLTIVNTSVLPFGHSRLDITIIAQ 252

Query: 241 VK 242
           ++
Sbjct: 253 ME 254

[Close]

BLAST of Cp4.1LG10g01780 vs. NCBI nr
Match: XP_022977221.1 (transcription factor bHLH25-like [Cucurbita maxima])

HSP 1 Score: 446 bits (1147), Expect = 1.14e-156
Identity = 227/242 (93.80%), Postives = 235/242 (97.11%), Query Frame = 0


Query: 1   EMMESAYQHEITNYPHDYTLDELNFPTNFPATEKLITSVQLDSISSSQFISFGDSPEIEK 60
           EMM+ AYQ+EITNYPHDYTLDELNFPTNFPATEKLITSVQLDSISSSQFISFGDSPEIEK
Sbjct: 13  EMMDCAYQYEITNYPHDYTLDELNFPTNFPATEKLITSVQLDSISSSQFISFGDSPEIEK 72

Query: 61  LDCAMGKDERGKDLSFIIPQSLDVNQNRYVIGYEEGHEIKKRATIGRTSGNGQQHVIAER 120
           LDCAMGK ERGKDLSFIIPQSL VNQNRYVIGYEEGH+IKKRATIGR SGNGQQHVIAER
Sbjct: 73  LDCAMGKVERGKDLSFIIPQSLGVNQNRYVIGYEEGHDIKKRATIGRNSGNGQQHVIAER 132

Query: 121 RRREKLSQSFAALSALIPGLNKTDKASVLGGAIKYVKDLQERVKWAEEEAGDEEGRVIKS 180
           RRREKLSQSFAALSALIPGLNKTDKASVLGGAIKYVK+LQERVKWAEEEAGDEEGRVIKS
Sbjct: 133 RRREKLSQSFAALSALIPGLNKTDKASVLGGAIKYVKELQERVKWAEEEAGDEEGRVIKS 192

Query: 181 VPNIETRVLESDVLVRIHCKKQKGCFSNIITQIQMLKLTIVNSCVLPFGHSRLDITIIAQ 240
           VP IETRVLE DVLV+IHCKKQKGCFSNI+TQIQ LKLTIVNSCVLPFGHSRLDITIIAQ
Sbjct: 193 VPKIETRVLERDVLVKIHCKKQKGCFSNILTQIQKLKLTIVNSCVLPFGHSRLDITIIAQ 252

Query: 241 VK 242
           ++
Sbjct: 253 ME 254

[Close]

BLAST of Cp4.1LG10g01780 vs. NCBI nr
Match: KAG7034250.1 (Transcription factor bHLH25, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 450 bits (1157), Expect = 8.30e-154
Identity = 229/240 (95.42%), Postives = 234/240 (97.50%), Query Frame = 0


Query: 1   EMMESAYQHEITNYPHDYTLDELNFPTNFPATEKLITSVQLDSISSSQFISFGDSPEIEK 60
           EMM+ AYQHEITNYPHDYTLDELNFPTN PATEKLITSVQLDSISSSQFISFGDSPEIEK
Sbjct: 38  EMMDCAYQHEITNYPHDYTLDELNFPTNLPATEKLITSVQLDSISSSQFISFGDSPEIEK 97

Query: 61  LDCAMGKDERGKDLSFIIPQSLDVNQNRYVIGYEEGHEIKKRATIGRTSGNGQQHVIAER 120
           LDCAMGKDERGKDLSFIIPQS DVNQNRYVIGYEEGH+IKKRATIGRTSGNGQQHVIAER
Sbjct: 98  LDCAMGKDERGKDLSFIIPQSFDVNQNRYVIGYEEGHDIKKRATIGRTSGNGQQHVIAER 157

Query: 121 RRREKLSQSFAALSALIPGLNKTDKASVLGGAIKYVKDLQERVKWAEEEAGDEEGRVIKS 180
           RRREKLSQSFAALSALIPGLNKTDKASVLGGAIKYVK+LQERVKWAEEEAGDEEGRVIKS
Sbjct: 158 RRREKLSQSFAALSALIPGLNKTDKASVLGGAIKYVKELQERVKWAEEEAGDEEGRVIKS 217

Query: 181 VPNIETRVLESDVLVRIHCKKQKGCFSNIITQIQMLKLTIVNSCVLPFGHSRLDITIIAQ 240
           VP IETRVLE DVLVRIHCKKQKGCFSNI+TQIQMLKLTIVN+ VLPFGHSRLDITIIAQ
Sbjct: 218 VPKIETRVLERDVLVRIHCKKQKGCFSNILTQIQMLKLTIVNTSVLPFGHSRLDITIIAQ 277

[Close]

BLAST of Cp4.1LG10g01780 vs. NCBI nr
Match: XP_023543370.1 (transcription factor bHLH25-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 415 bits (1067), Expect = 8.26e-145
Identity = 218/242 (90.08%), Postives = 221/242 (91.32%), Query Frame = 0


Query: 1   EMMESAYQHEITNYPHDYTLDELNFPTNFPATEKLITSVQLDSISSSQFISFGDSPEIEK 60
           EMMESAYQHEITNYPHDYTLDELNFPTNFPATEKLITSVQLDSISSSQFISFGDSPEIE 
Sbjct: 13  EMMESAYQHEITNYPHDYTLDELNFPTNFPATEKLITSVQLDSISSSQFISFGDSPEIE- 72

Query: 61  LDCAMGKDERGKDLSFIIPQSLDVNQNRYVIGYEEGHEIKKRATIGRTSGNGQQHVIAER 120
                               +LDVNQNRYVIGYEEGHEIKKRATIGRTSGNGQQHVIAER
Sbjct: 73  --------------------NLDVNQNRYVIGYEEGHEIKKRATIGRTSGNGQQHVIAER 132

Query: 121 RRREKLSQSFAALSALIPGLNKTDKASVLGGAIKYVKDLQERVKWAEEEAGDEEGRVIKS 180
           RRREKLSQSFAALSALIPGLNKTDKASVLGGAIKYVKDLQERVKWAEEEAGDEEGRVIKS
Sbjct: 133 RRREKLSQSFAALSALIPGLNKTDKASVLGGAIKYVKDLQERVKWAEEEAGDEEGRVIKS 192

Query: 181 VPNIETRVLESDVLVRIHCKKQKGCFSNIITQIQMLKLTIVNSCVLPFGHSRLDITIIAQ 240
           VPNIETRVLESDVLVRIHCKKQKGCFSNIITQIQMLKLTIVNSCVLPFGHSRLDITIIAQ
Sbjct: 193 VPNIETRVLESDVLVRIHCKKQKGCFSNIITQIQMLKLTIVNSCVLPFGHSRLDITIIAQ 233

Query: 241 VK 242
           ++
Sbjct: 253 ME 233

[Close]

BLAST of Cp4.1LG10g01780 vs. ExPASy TrEMBL
Match: A0A6J1GFR7 (transcription factor bHLH25-like OS=Cucurbita moschata OX=3662 GN=LOC111453758 PE=4 SV=1)

HSP 1 Score: 451 bits (1161), Expect = 4.07e-159
Identity = 229/242 (94.63%), Postives = 236/242 (97.52%), Query Frame = 0


Query: 1   EMMESAYQHEITNYPHDYTLDELNFPTNFPATEKLITSVQLDSISSSQFISFGDSPEIEK 60
           EMM+ AYQHEITNYPHDYTLDELNFPTNFPATEKL+TSVQLDSISSSQFISFGDSPEIEK
Sbjct: 13  EMMDCAYQHEITNYPHDYTLDELNFPTNFPATEKLLTSVQLDSISSSQFISFGDSPEIEK 72

Query: 61  LDCAMGKDERGKDLSFIIPQSLDVNQNRYVIGYEEGHEIKKRATIGRTSGNGQQHVIAER 120
           LDCAMGKDERGKDLSFIIPQSLDVNQNRY IGYEEGH+I KRATIGRTSGNGQQHVIAER
Sbjct: 73  LDCAMGKDERGKDLSFIIPQSLDVNQNRYAIGYEEGHDITKRATIGRTSGNGQQHVIAER 132

Query: 121 RRREKLSQSFAALSALIPGLNKTDKASVLGGAIKYVKDLQERVKWAEEEAGDEEGRVIKS 180
           RRREKLSQSFAALSALIPGLNKTDKASVLGGAIKYVK+LQERVKWAEEEAGDEEGRVIKS
Sbjct: 133 RRREKLSQSFAALSALIPGLNKTDKASVLGGAIKYVKELQERVKWAEEEAGDEEGRVIKS 192

Query: 181 VPNIETRVLESDVLVRIHCKKQKGCFSNIITQIQMLKLTIVNSCVLPFGHSRLDITIIAQ 240
           VP IETRVLE DVLVRIHCKKQKGCFSNI+TQIQMLKLTIVNS VLPFGHSRLDITIIAQ
Sbjct: 193 VPKIETRVLERDVLVRIHCKKQKGCFSNILTQIQMLKLTIVNSSVLPFGHSRLDITIIAQ 252

Query: 241 VK 242
           ++
Sbjct: 253 ME 254

[Close]

BLAST of Cp4.1LG10g01780 vs. ExPASy TrEMBL
Match: A0A6J1IJA5 (transcription factor bHLH25-like OS=Cucurbita maxima OX=3661 GN=LOC111477596 PE=4 SV=1)

HSP 1 Score: 446 bits (1147), Expect = 5.53e-157
Identity = 227/242 (93.80%), Postives = 235/242 (97.11%), Query Frame = 0


Query: 1   EMMESAYQHEITNYPHDYTLDELNFPTNFPATEKLITSVQLDSISSSQFISFGDSPEIEK 60
           EMM+ AYQ+EITNYPHDYTLDELNFPTNFPATEKLITSVQLDSISSSQFISFGDSPEIEK
Sbjct: 13  EMMDCAYQYEITNYPHDYTLDELNFPTNFPATEKLITSVQLDSISSSQFISFGDSPEIEK 72

Query: 61  LDCAMGKDERGKDLSFIIPQSLDVNQNRYVIGYEEGHEIKKRATIGRTSGNGQQHVIAER 120
           LDCAMGK ERGKDLSFIIPQSL VNQNRYVIGYEEGH+IKKRATIGR SGNGQQHVIAER
Sbjct: 73  LDCAMGKVERGKDLSFIIPQSLGVNQNRYVIGYEEGHDIKKRATIGRNSGNGQQHVIAER 132

Query: 121 RRREKLSQSFAALSALIPGLNKTDKASVLGGAIKYVKDLQERVKWAEEEAGDEEGRVIKS 180
           RRREKLSQSFAALSALIPGLNKTDKASVLGGAIKYVK+LQERVKWAEEEAGDEEGRVIKS
Sbjct: 133 RRREKLSQSFAALSALIPGLNKTDKASVLGGAIKYVKELQERVKWAEEEAGDEEGRVIKS 192

Query: 181 VPNIETRVLESDVLVRIHCKKQKGCFSNIITQIQMLKLTIVNSCVLPFGHSRLDITIIAQ 240
           VP IETRVLE DVLV+IHCKKQKGCFSNI+TQIQ LKLTIVNSCVLPFGHSRLDITIIAQ
Sbjct: 193 VPKIETRVLERDVLVKIHCKKQKGCFSNILTQIQKLKLTIVNSCVLPFGHSRLDITIIAQ 252

Query: 241 VK 242
           ++
Sbjct: 253 ME 254

[Close]

BLAST of Cp4.1LG10g01780 vs. ExPASy TrEMBL
Match: A0A1S3B1X4 (transcription factor bHLH25-like OS=Cucumis melo OX=3656 GN=LOC103484897 PE=4 SV=1)

HSP 1 Score: 205 bits (521), Expect = 9.37e-62
Identity = 138/284 (48.59%), Postives = 173/284 (60.92%), Query Frame = 0


Query: 1   EMMESAYQHE-ITNYPHDYTLDELNFPTNFPATEKLITSVQLDSISSSQFISFGD-SPEI 60
           EMME +Y++E +   PHDYTLDELNFP    A EK + +++    SSSQ +SFGD S EI
Sbjct: 13  EMMECSYEYERMKKCPHDYTLDELNFP----AKEK-VNNLR----SSSQLVSFGDYSGEI 72

Query: 61  EKLDCAMGKDERGKDLSFIIPQSLDVNQNRYVIGYEEGHEIKKR--ATI-------GRTS 120
           E                       D N    +   E+GHEIKK   +TI          +
Sbjct: 73  ENY-------------------KFD-NYGNLIGSGEKGHEIKKDYCSTIIMGQLPNRNRN 132

Query: 121 GNGQQHVIAERRRREKLSQSFAALSALIPGLNKTDKASVLGGAIKYVKDLQERVKWAEEE 180
            N  +HVIAERRRREK+ Q+F ALSALIPGL K DKASVLGGAI+YVK+LQER+KWAEEE
Sbjct: 133 HNNSEHVIAERRRREKIRQNFIALSALIPGLIKRDKASVLGGAIEYVKELQERLKWAEEE 192

Query: 181 AG-----------------------------DEEG--RVIKSVPNIETRVLESDVLVRIH 240
           A                              DE G    ++SVP IE RVLE DV+VRIH
Sbjct: 193 AEKQKSVIKSVVFVKRINLDSDDSENETFSLDENGDRSSVRSVPTIEIRVLEKDVMVRIH 252

Query: 241 CKKQKGCFSNIITQIQMLKLTIVNSCVLPFGHSRLDITIIAQVK 242
           CKK++GC+++I++QI+ LKLTI+NSCV PFG SRLDITI+A+++
Sbjct: 253 CKKRQGCYTSILSQIEKLKLTILNSCVSPFGESRLDITIVAEME 267

[Close]

BLAST of Cp4.1LG10g01780 vs. ExPASy TrEMBL
Match: A0A0A0KLM8 (BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G497120 PE=4 SV=1)

HSP 1 Score: 200 bits (508), Expect = 9.56e-60
Identity = 143/301 (47.51%), Postives = 172/301 (57.14%), Query Frame = 0


Query: 2   MMESAYQHE-ITNYPHDYTLDELNFPTNFPATEKLITSVQLDSISSSQFISFGD-SPEIE 61
           MME +Y++E +  YPHDYTLDELNFP    A EK+      +S SS Q ISFGD S EIE
Sbjct: 1   MMECSYEYERMKKYPHDYTLDELNFP----AMEKVN-----NSRSSGQLISFGDYSGEIE 60

Query: 62  KLDCAMGKDERGKDLSFIIPQSLDVNQNRYVIGYEEGHEIKK----RATIGRT-----SG 121
                   D+ G  + F                 EE HEIKK       +G+      + 
Sbjct: 61  NYKF----DDYGNLIGF----------------EEEEHEIKKDYCSTIIMGQLPNHNHNN 120

Query: 122 NGQQHVIAERRRREKLSQSFAALSALIPGLNK------------------TDKASVLGGA 181
           N  +HVIAERRRREK+ Q+F ALSALIPGL K                   DKASVLGGA
Sbjct: 121 NNSEHVIAERRRREKIRQNFIALSALIPGLIKDHDGHTVLQVEVSVEGLKADKASVLGGA 180

Query: 182 IKYVKDLQERVKWAEEEAGDEEGRVIKSV------------------------------- 241
           IK+VK+LQER+KWAEE+   E+ RVIKSV                               
Sbjct: 181 IKFVKELQERLKWAEEKE-KEQKRVIKSVVFVKTINLDSDFDNETFSLDENGGRFSVRSV 240

[Close]

BLAST of Cp4.1LG10g01780 vs. ExPASy TrEMBL
Match: A0A6J1BTD7 (transcription factor bHLH18-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111005390 PE=4 SV=1)

HSP 1 Score: 161 bits (407), Expect = 4.99e-44
Identity = 120/302 (39.74%), Postives = 158/302 (52.32%), Query Frame = 0


Query: 3   MESAYQHEITNYPHDYTLDELNFPT-------------------------NFPATEKLIT 62
           +ESA+  +    P + TL+EL+F T                            A  + I 
Sbjct: 14  LESAFMDDFQMNPFECTLEELSFQTFSDESYTSHADLDNSSVKTPPAKQPKTAANNRQIA 73

Query: 63  SVQLDSISSSQFISFGDSPEIEKLDCAMG------KDERGK----DLSFIIPQSLDVNQN 122
           S+   S SSS  ISFG+S   +  D  +       K E G     DLS +I Q    N+N
Sbjct: 74  SMAASS-SSSHIISFGNSHSAKVNDNGVNYSNVKPKFEMGCEGNIDLSSVIAQGGS-NEN 133

Query: 123 RYVIGYEEGHEIKKRA-TIGRTSGNGQQHVIAERRRREKLSQSFAALSALIPGLNKTDKA 182
           +     + G  IK+ A  + R+    Q HV+AER+RREKLSQ F ALSALIP L K DKA
Sbjct: 134 QNYCSQKYGQGIKRGAGCLNRSPLVAQDHVLAERKRREKLSQRFVALSALIPHLKKMDKA 193

Query: 183 SVLGGAIKYVKDLQERVKWAEEE---------------------------AGDEEGRVIK 241
           S+LG AI Y+KDLQER++ A+E+                           + DE     +
Sbjct: 194 SILGDAITYIKDLQERLRVADEQLAAKATVESVVFANRSSDDLSSGGSDVSSDENSSPDR 253

[Close]

BLAST of Cp4.1LG10g01780 vs. TAIR 10
Match: AT4G37850.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 120.2 bits (300), Expect = 2.4e-27
Identity = 74/168 (44.05%), Postives = 97/168 (57.74%), Query Frame = 0


Query: 100 KKRATIGRTSGNGQQHVIAERRRREKLSQSFAALSALIPGLNKTDKASVLGGAIKYVKDL 159
           K+     R   N Q H+IAER+RREKL+Q F ALSAL+PGL K DKASVLG A+K++K L
Sbjct: 138 KRAQPFSRNQSNAQDHIIAERKRREKLTQRFVALSALVPGLKKMDKASVLGDALKHIKYL 197

Query: 160 QERVKWAEEEAGD---------------------------EEGRVIKSVPNIETRVLESD 219
           QERV   EE+  +                           E+G     +P IE R  + D
Sbjct: 198 QERVGELEEQKKERRLESMVLVKKSKLILDDNNQSFSSSCEDGFSDLDLPEIEVRFSDED 257

Query: 220 VLVRIHCKKQKGCFSNIITQIQMLKLTIVNSCVLPFGHSRLDITIIAQ 241
           VL++I C+KQKG  + I+ +I+ L + I NS VL FG + LDITIIA+
Sbjct: 258 VLIKILCEKQKGHLAKIMAEIEKLHILITNSSVLNFGPT-LDITIIAK 304

[Close]

BLAST of Cp4.1LG10g01780 vs. TAIR 10
Match: AT2G22750.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 119.4 bits (298), Expect = 4.2e-27
Identity = 77/171 (45.03%), Postives = 102/171 (59.65%), Query Frame = 0


Query: 100 KKRATIGRTSGNGQQHVIAERRRREKLSQSFAALSALIPGLNKTDKASVLGGAIKYVKDL 159
           K+  ++ R+  N Q H++AER+RREKL+Q F ALSALIPGL K DKASVLG AIK++K L
Sbjct: 112 KRAQSLTRSQSNAQDHILAERKRREKLTQRFVALSALIPGLKKMDKASVLGDAIKHIKYL 171

Query: 160 QERVKWAEEEAGDE--EGRVI----------------------------KSVPNIETRVL 219
           QE VK  EE+  ++  E  V+                             ++P IE RV 
Sbjct: 172 QESVKEYEEQKKEKTMESVVLVKKSSLVLDENHQPSSSSSSDGNRNSSSSNLPEIEVRVS 231

Query: 220 ESDVLVRIHCKKQKGCFSNIITQIQMLKLTIVNSCVLPFGHSRLDITIIAQ 241
             DVL++I C+KQKG    I+ +I+ L L+I NS VLPFG +  DI+IIAQ
Sbjct: 232 GKDVLIKILCEKQKGNVIKIMGEIEKLGLSITNSNVLPFGPT-FDISIIAQ 281

[Close]

BLAST of Cp4.1LG10g01780 vs. TAIR 10
Match: AT2G22750.2 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 119.4 bits (298), Expect = 4.2e-27
Identity = 77/171 (45.03%), Postives = 102/171 (59.65%), Query Frame = 0


Query: 100 KKRATIGRTSGNGQQHVIAERRRREKLSQSFAALSALIPGLNKTDKASVLGGAIKYVKDL 159
           K+  ++ R+  N Q H++AER+RREKL+Q F ALSALIPGL K DKASVLG AIK++K L
Sbjct: 112 KRAQSLTRSQSNAQDHILAERKRREKLTQRFVALSALIPGLKKMDKASVLGDAIKHIKYL 171

Query: 160 QERVKWAEEEAGDE--EGRVI----------------------------KSVPNIETRVL 219
           QE VK  EE+  ++  E  V+                             ++P IE RV 
Sbjct: 172 QESVKEYEEQKKEKTMESVVLVKKSSLVLDENHQPSSSSSSDGNRNSSSSNLPEIEVRVS 231

Query: 220 ESDVLVRIHCKKQKGCFSNIITQIQMLKLTIVNSCVLPFGHSRLDITIIAQ 241
             DVL++I C+KQKG    I+ +I+ L L+I NS VLPFG +  DI+IIAQ
Sbjct: 232 GKDVLIKILCEKQKGNVIKIMGEIEKLGLSITNSNVLPFGPT-FDISIIAQ 281

[Close]

BLAST of Cp4.1LG10g01780 vs. TAIR 10
Match: AT2G22760.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 117.1 bits (292), Expect = 2.1e-26
Identity = 66/157 (42.04%), Postives = 96/157 (61.15%), Query Frame = 0


Query: 113 QQHVIAERRRREKLSQSFAALSALIPGLNKTDKASVLGGAIKYVKDLQERVKWAEEEAG- 172
           ++HV+AER+RREKLS+ F ALSAL+PGL K DK ++L  AI  +K LQE+++  +EE   
Sbjct: 118 KEHVLAERKRREKLSEKFIALSALLPGLKKADKVTILDDAISRMKQLQEQLRTLKEEKEA 177

Query: 173 -----------------DEEGRVI----------KSVPNIETRVLESDVLVRIHCKKQKG 232
                            DEE  +           +++P IE ++ ++D+L+RI C+K KG
Sbjct: 178 TRQMESMILVKKSKVFFDEEPNLSCSPSVHIEFDQALPEIEAKISQNDILIRILCEKSKG 237

Query: 233 CFSNIITQIQMLKLTIVNSCVLPFGHSRLDITIIAQV 242
           C  NI+  I+  +L I NS VLPFG S LDIT++AQ+
Sbjct: 238 CMINILNTIENFQLRIENSIVLPFGDSTLDITVLAQM 274

[Close]

BLAST of Cp4.1LG10g01780 vs. TAIR 10
Match: AT2G22770.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 117.1 bits (292), Expect = 2.1e-26
Identity = 67/169 (39.64%), Postives = 97/169 (57.40%), Query Frame = 0


Query: 113 QQHVIAERRRREKLSQSFAALSALIPGLNKTDKASVLGGAIKYVKDLQERVKWAEEE--- 172
           ++HV+AER+RR+KL++   ALSAL+PGL KTDKA+VL  AIK++K LQERVK  EEE   
Sbjct: 131 KEHVLAERKRRQKLNERLIALSALLPGLKKTDKATVLEDAIKHLKQLQERVKKLEEERVV 190

Query: 173 -------------------------------------AGDEEGRVIKSVPNIETRVLESD 232
                                                + DE     +++P IE RV + D
Sbjct: 191 TKKMDQSIILVKRSQVYLDDDSSSYSSTCSAASPLSSSSDEVSIFKQTMPMIEARVSDRD 250

Query: 233 VLVRIHCKKQKGCFSNIITQIQMLKLTIVNSCVLPFGHSRLDITIIAQV 242
           +L+R+HC+K KGC   I++ ++  +L +VNS  LPFG+S L ITI+ ++
Sbjct: 251 LLIRVHCEKNKGCMIKILSSLEKFRLEVVNSFTLPFGNSTLVITILTKM 299

The following BLAST results are available for this feature:

BLAST of Cp4.1LG10g01780 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9T072	3.4e-26	44.05	Transcription factor bHLH25 OS=Arabidopsis thaliana OX=3702 GN=BHLH25 PE=2 SV=2	[more]
Q1PF17	5.8e-26	45.03	Transcription factor bHLH18 OS=Arabidopsis thaliana OX=3702 GN=BHLH18 PE=1 SV=1	[more]
Q1PF16	2.9e-25	42.04	Transcription factor bHLH19 OS=Arabidopsis thaliana OX=3702 GN=BHLH19 PE=1 SV=1	[more]
Q8S3F1	2.9e-25	39.64	Transcription factor NAI1 OS=Arabidopsis thaliana OX=3702 GN=NAI1 PE=2 SV=1	[more]
Q9ZPY8	1.3e-12	39.81	Transcription factor ABA-INDUCIBLE bHLH-TYPE OS=Arabidopsis thaliana OX=3702 GN=...	[more]

BLAST of Cp4.1LG10g01780 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022950748.1	8.41e-159	94.63	transcription factor bHLH25-like [Cucurbita moschata]	[more]
KAG6604086.1	1.19e-158	94.63	Transcription factor basic helix-loop-helix 25, partial [Cucurbita argyrosperma ...	[more]
XP_022977221.1	1.14e-156	93.80	transcription factor bHLH25-like [Cucurbita maxima]	[more]
KAG7034250.1	8.30e-154	95.42	Transcription factor bHLH25, partial [Cucurbita argyrosperma subsp. argyrosperma...	[more]
XP_023543370.1	8.26e-145	90.08	transcription factor bHLH25-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Cp4.1LG10g01780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GFR7	4.07e-159	94.63	transcription factor bHLH25-like OS=Cucurbita moschata OX=3662 GN=LOC111453758 P...	[more]
A0A6J1IJA5	5.53e-157	93.80	transcription factor bHLH25-like OS=Cucurbita maxima OX=3661 GN=LOC111477596 PE=...	[more]
A0A1S3B1X4	9.37e-62	48.59	transcription factor bHLH25-like OS=Cucumis melo OX=3656 GN=LOC103484897 PE=4 SV...	[more]
A0A0A0KLM8	9.56e-60	47.51	BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G497120 PE=4 S...	[more]
A0A6J1BTD7	4.99e-44	39.74	transcription factor bHLH18-like isoform X1 OS=Momordica charantia OX=3673 GN=LO...	[more]

BLAST of Cp4.1LG10g01780 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G37850.1	2.4e-27	44.05	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT2G22750.1	4.2e-27	45.03	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT2G22750.2	4.2e-27	45.03	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT2G22760.1	2.1e-26	42.04	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT2G22770.1	2.1e-26	39.64	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 156..176
None	No IPR available	PANTHER	PTHR45959:SF36	TRANSCRIPTION FACTOR NAI1	coord: 176..241 coord: 28..171
None	No IPR available	PANTHER	PTHR45959	BHLH TRANSCRIPTION FACTOR	coord: 176..241 coord: 28..171
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	SMART	SM00353	finulus	coord: 116..165 e-value: 1.7E-14 score: 64.2
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 114..160 e-value: 1.7E-10 score: 40.8
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROSITE	PS50888	BHLH	coord: 110..159 score: 15.084582
IPR036638	Helix-loop-helix DNA-binding domain superfamily	GENE3D	4.10.280.10		coord: 106..169 e-value: 1.5E-14 score: 55.6
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 112..171

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG10g01780.1	Cp4.1LG10g01780.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046983	protein dimerization activity