Cp4.1LG10g01110 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG10g01110
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	E3 ubiquitin-protein ligase RHA2B-like
Location	Cp4.1LG10: 3386256 .. 3388389 (+)
RNA-Seq Expression	Cp4.1LG10g01110
Synteny	Cp4.1LG10g01110

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AATGCAGGGACGATTTTTTTCCGAAAGATTATAAAATTAAAAGAATTGAATCAGTGGAAACTATCCGCCAATTTCCATCCCGAAGCCATGGGAGCTCTCTCCGAGTTCTTCTCCCACCTCCACACAATGACCGCAGTCTTCATCACCCTTTTACTTCTCGAATGCGTTACTCTCATTCGCACCATCTTCGGTTTGAGACCTAACGCCGACAAGCGCGTAATTACGACGGCGCAGTTTTTGAAATTGATCGAGGAGAAGAATCCGACCATCCGATTCTCCAAGAAAGTTACCTCGAGTTCGGACGATCAGTGCGCCGTTTGCCTCTCTGAATTTGAGGAAGGGGAGATGGTACGGAAATTGCAATGCAACCATACTTTTCACAAGGATTGCCTCGATAATTGGTTGAAACTCTTTTTTGCTACCTGTCCGCTTTGCCGGTGTAAGGTTTTGCCGGACGATATCGTCGCCGGTTACCGCAGGCTGCGAGACCGTGTAGAGTACGACGGCAGCGACGAGGAGCTCATCTTTTTGTTATCGGCATTACATGGTAACAGTATATATAGGTTTTTCTAGGGCGAAATACCAATTTCATTTTGTTCATCACAGAATAGAATCAAATAGCATAGAATCTTGATTTTCTGTATTAACTAGGAAATATTGTTTTCTCCTTTCACTGACGAACAATAGCGTTAGGGAACAGCTCGTTTCTGGTTCGATTGATCAGGAGCCAGATCGCGATAAATCGTGTATGCTTCTCTTGCAATTACGCAAGCCAACTGTTTGATACTTCGTTTGCATGATTGCTTCCTACTCTTCCTGGTTATTCGTCAACGAATATCATTAATTCTGGGGACAGCCAATTTACTTGATTTTTTTTNGGGGGACCTTTGTTCCCAATAAGACACTGAAATCTGCTCTAGAATCATCCAAAGCATAGCATCTTTTATCCATCCGGAAGTTTACTTGGGCTAATCCGAAGGATCTTTAACAAAATTGAAGATGTTAGTTAGATGATCCCTTAGTGTCATTTGAAGGAGGCTTATTGCCTCGTAGGGCCAGGGGATATTATGCGACTTATAATTATAGTAGATGCGAGTTGGTGGTCTAATTTATGGGGCTTTTAGAGGGTAACTAGAATGGTACTTGACGGCATTTATTAAGAACATAAGTTGAAAGAAAAAGCAAAATTTGTTGGTTTTCCCTTGTGTTTCCATGGGGGTTTAGGTGGAGATGGTAGGAGGAGGACCAAAGGCTCTGTTTGTAGGCTGTAACAAACTGATTTAGCTCATCTTCTCTGTAGTTAAGCCCCAATCTTATGTGTTTCTGTTGCCCATTTTCTTCAATCCTACTCCAACTCTTGAACACCCATCAAAAGATGAGGGAAATTGAGGACATGCTTAATTAGCAGCCTGGTCTGATAAAACAATTTTCAAGAACCATGATTGGGTCAGGTGACTTGTATTATTAAGGTTATATTGCGTAGTTCAAGGAATAACAACTTTAGCATTCTCAGAATCAAGTTTTATATGGTGAACCCAAATACCTTCCCACTGTCTTTAGGACTGTTCCTGAGAATAAGTTCGAAAAATTTCCTCTCCTAAATATTCTGTACGTCGGGCACTTGCAATAAGTTGAAAGGGAGCAGGCTAGACCTGGTGGTGCAGGGAAAGGTAATTGTAAAAGATTTGACATTTAATACCAGATTGTTGAGTAATAGTACCAAACCAAAAGAGCGCATCTGTTCTGGCCGTGAGTTTGGTTAGATGCAACTGATCCCATTTGAAAATTAGCGGTAATCAGGGCTGCTGGACTTTAGCATTATGTTCTTGGTGCTTTGAATTATACTCGTTTATTTTGAGATTAATTTGTGTTAGATTATCTGATGAAGATAGAATTGATTTGATGATTTGATGATTTGATTGATAGCTGTTATATCCGTTGGATTTTAAAATCATAAGGAATCTTTTATAACATGCCTATCATTCTATGTTGTGACAGCTGCCGGCAACAATTATCTGTAAGCTTGGTTTGGGGCCGAAAATAAGGGACATTCTGGATGGTCTAACATTTATATGATTATACAGTTCATGAATATAAAGATTAACCTTTATTTTTTTGTACAGTAAATAACTGA

mRNA sequence

AATGCAGGGACGATTTTTTTCCGAAAGATTATAAAATTAAAAGAATTGAATCAGTGGAAACTATCCGCCAATTTCCATCCCGAAGCCATGGGAGCTCTCTCCGAGTTCTTCTCCCACCTCCACACAATGACCGCAGTCTTCATCACCCTTTTACTTCTCGAATGCGTTACTCTCATTCGCACCATCTTCGGTTTGAGACCTAACGCCGACAAGCGCGTAATTACGACGGCGCAGTTTTTGAAATTGATCGAGGAGAAGAATCCGACCATCCGATTCTCCAAGAAAGTTACCTCGAGTTCGGACGATCAGTGCGCCGTTTGCCTCTCTGAATTTGAGGAAGGGGAGATGGTACGGAAATTGCAATGCAACCATACTTTTCACAAGGATTGCCTCGATAATTGGTTGAAACTCTTTTTTGCTACCTGTCCGCTTTGCCGGTGTAAGGTTTTGCCGGACGATATCGTCGCCGGTTACCGCAGGCTGCGAGACCGTGTAGAGTACGACGGCAGCGACGAGGAGCTCATCTTTTTGTTATCGGCATTACATGTAAATAACTGA

Coding sequence (CDS)

AATGCAGGGACGATTTTTTTCCGAAAGATTATAAAATTAAAAGAATTGAATCAGTGGAAACTATCCGCCAATTTCCATCCCGAAGCCATGGGAGCTCTCTCCGAGTTCTTCTCCCACCTCCACACAATGACCGCAGTCTTCATCACCCTTTTACTTCTCGAATGCGTTACTCTCATTCGCACCATCTTCGGTTTGAGACCTAACGCCGACAAGCGCGTAATTACGACGGCGCAGTTTTTGAAATTGATCGAGGAGAAGAATCCGACCATCCGATTCTCCAAGAAAGTTACCTCGAGTTCGGACGATCAGTGCGCCGTTTGCCTCTCTGAATTTGAGGAAGGGGAGATGGTACGGAAATTGCAATGCAACCATACTTTTCACAAGGATTGCCTCGATAATTGGTTGAAACTCTTTTTTGCTACCTGTCCGCTTTGCCGGTGTAAGGTTTTGCCGGACGATATCGTCGCCGGTTACCGCAGGCTGCGAGACCGTGTAGAGTACGACGGCAGCGACGAGGAGCTCATCTTTTTGTTATCGGCATTACATGTAAATAACTGA

Protein sequence

NAGTIFFRKIIKLKELNQWKLSANFHPEAMGALSEFFSHLHTMTAVFITLLLLECVTLIRTIFGLRPNADKRVITTAQFLKLIEEKNPTIRFSKKVTSSSDDQCAVCLSEFEEGEMVRKLQCNHTFHKDCLDNWLKLFFATCPLCRCKVLPDDIVAGYRRLRDRVEYDGSDEELIFLLSALHVNN

Homology

[Close]

BLAST of Cp4.1LG10g01110 vs. ExPASy Swiss-Prot
Match: Q9ZT50 (E3 ubiquitin-protein ligase RHA2A OS=Arabidopsis thaliana OX=3702 GN=RHA2A PE=1 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.9e-13
Identity = 32/57 (56.14%), Postives = 40/57 (70.18%), Query Frame = 0


Query: 104 CAVCLSEFEEGEMVRKLQCNHTFHKDCLDNWLKLFFATCPLCRCKVLPDDIVAGYRR 161
           C VCLS+ +EGE VRKL+C H FHK CL+ WL  F  TCPLCR  ++ DD V+  +R
Sbjct: 86  CVVCLSKLKEGEEVRKLECRHVFHKKCLEGWLHQFNFTCPLCRSALVSDDCVSKTQR 142

[Close]

BLAST of Cp4.1LG10g01110 vs. ExPASy Swiss-Prot
Match: Q9SI09 (Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana OX=3702 GN=XERICO PE=1 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 3.2e-13
Identity = 34/88 (38.64%), Postives = 52/88 (59.09%), Query Frame = 0


Query: 70  DKRVITTAQFLKLIEEKNPTIRFSK--KVTSSSDDQCAVCLSEFEEGEMVRKLQCNHTFH 129
           D RV     +L+    + PT+RF    +    +D++C+VCLS+F+    + KL+C H FH
Sbjct: 67  DFRVCQPESYLEEFRNRTPTLRFESLCRCKKQADNECSVCLSKFQGDSEINKLKCGHLFH 126

Query: 130 KDCLDNWLKLFFATCPLCRCK--VLPDD 154
           K CL+ W+  +  TCPLCR    V+P+D
Sbjct: 127 KTCLEKWIDYWNITCPLCRTPLVVVPED 154

[Close]

BLAST of Cp4.1LG10g01110 vs. ExPASy Swiss-Prot
Match: Q9ZU51 (E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana OX=3702 GN=RHA2B PE=1 SV=2)

HSP 1 Score: 75.1 bits (183), Expect = 9.3e-13
Identity = 39/104 (37.50%), Postives = 56/104 (53.85%), Query Frame = 0


Query: 50  LLLLECVTLIRTIFGLR--PNADKRVITTAQFLKLIEEKNPTIRFSKKVTSSSDDQCAVC 109
           +LL    T  R +  L   P++   V+ T+    L ++ N    FS + + ++   C VC
Sbjct: 18  MLLALLATFFRHVRSLLLFPSSAPVVVVTSNLSVLADQLNLNRLFSYRYSDNAASDCIVC 77

Query: 110 LSEFEEGEMVRKLQCNHTFHKDCLDNWLKLFFATCPLCRCKVLP 152
           LS+ + GE VRKL C H FHK CL+ WL+     CPLCR  +LP
Sbjct: 78  LSKLKTGEEVRKLDCRHVFHKQCLEGWLQHLNFNCPLCRSPLLP 121

[Close]

BLAST of Cp4.1LG10g01110 vs. ExPASy Swiss-Prot
Match: Q8LPN7 (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19950 PE=1 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 6.0e-12
Identity = 30/66 (45.45%), Postives = 46/66 (69.70%), Query Frame = 0


Query: 88  PTIRFSKKVTSSSDDQCAVCLSEFEEGEMVRKLQCNHTFHKDCLDNWLKLFFATCPLCRC 147
           PT++ +K +  S  +QCAVC+ EFE+G  V+++ C H FH+DCL  WL+L   +CP+CR 
Sbjct: 200 PTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLEL-HNSCPVCRF 259

Query: 148 KVLPDD 154
           ++  DD
Sbjct: 260 ELPTDD 264

[Close]

BLAST of Cp4.1LG10g01110 vs. ExPASy Swiss-Prot
Match: Q9XF92 (Brassinosteroid-responsive RING protein 1 OS=Arabidopsis thaliana OX=3702 GN=BRH1 PE=2 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 5.1e-11
Identity = 34/76 (44.74%), Postives = 45/76 (59.21%), Query Frame = 0


Query: 82  LIEEKNPTIRFSKKVTSSSD--DQCAVCLSEFEEGEMVRKLQ-CNHTFHKDCLDNWLKLF 141
           LI E  P I+F +   S  D  + CAVCL EFE  + +R L+ C H FH+ CLD W+   
Sbjct: 70  LIREILPVIKFEELTNSGEDLPENCAVCLYEFEGEQEIRWLRNCRHIFHRSCLDRWMDHD 129

Query: 142 FATCPLCRCKVLPDDI 155
             TCPLCR   +PD++
Sbjct: 130 QKTCPLCRTPFVPDEM 145

[Close]

BLAST of Cp4.1LG10g01110 vs. NCBI nr
Match: XP_022950774.1 (E3 ubiquitin-protein ligase RHA2B-like [Cucurbita moschata] >XP_023543925.1 E3 ubiquitin-protein ligase RHA2B-like [Cucurbita pepo subsp. pepo] >KAG6604013.1 E3 ubiquitin-protein ligase RHA2B, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 310 bits (793), Expect = 1.16e-105
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0


Query: 30  MGALSEFFSHLHTMTAVFITLLLLECVTLIRTIFGLRPNADKRVITTAQFLKLIEEKNPT 89
           MGALSEFFSHLHTMTAVFITLLLLECVTLIRTIFGLRPNADKRVITTAQFLKLIEEKNPT
Sbjct: 1   MGALSEFFSHLHTMTAVFITLLLLECVTLIRTIFGLRPNADKRVITTAQFLKLIEEKNPT 60

Query: 90  IRFSKKVTSSSDDQCAVCLSEFEEGEMVRKLQCNHTFHKDCLDNWLKLFFATCPLCRCKV 149
           IRFSKKVTSSSDDQCAVCLSEFEEGEMVRKLQCNHTFHKDCLDNWLKLFFATCPLCRCKV
Sbjct: 61  IRFSKKVTSSSDDQCAVCLSEFEEGEMVRKLQCNHTFHKDCLDNWLKLFFATCPLCRCKV 120

Query: 150 LPDDIVAGYRRLRDRVEYDGSDEELIFLLSALH 182
           LPDDIVAGYRRLRDRVEYDGSDEELIFLLSALH
Sbjct: 121 LPDDIVAGYRRLRDRVEYDGSDEELIFLLSALH 153

[Close]

BLAST of Cp4.1LG10g01110 vs. NCBI nr
Match: KAG7034177.1 (E3 ubiquitin-protein ligase RHA2B [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 310 bits (793), Expect = 1.54e-105
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0


Query: 30  MGALSEFFSHLHTMTAVFITLLLLECVTLIRTIFGLRPNADKRVITTAQFLKLIEEKNPT 89
           MGALSEFFSHLHTMTAVFITLLLLECVTLIRTIFGLRPNADKRVITTAQFLKLIEEKNPT
Sbjct: 1   MGALSEFFSHLHTMTAVFITLLLLECVTLIRTIFGLRPNADKRVITTAQFLKLIEEKNPT 60

Query: 90  IRFSKKVTSSSDDQCAVCLSEFEEGEMVRKLQCNHTFHKDCLDNWLKLFFATCPLCRCKV 149
           IRFSKKVTSSSDDQCAVCLSEFEEGEMVRKLQCNHTFHKDCLDNWLKLFFATCPLCRCKV
Sbjct: 61  IRFSKKVTSSSDDQCAVCLSEFEEGEMVRKLQCNHTFHKDCLDNWLKLFFATCPLCRCKV 120

Query: 150 LPDDIVAGYRRLRDRVEYDGSDEELIFLLSALH 182
           LPDDIVAGYRRLRDRVEYDGSDEELIFLLSALH
Sbjct: 121 LPDDIVAGYRRLRDRVEYDGSDEELIFLLSALH 153

[Close]

BLAST of Cp4.1LG10g01110 vs. NCBI nr
Match: XP_022978570.1 (E3 ubiquitin-protein ligase RHA2B-like [Cucurbita maxima])

HSP 1 Score: 309 bits (792), Expect = 1.65e-105
Identity = 152/153 (99.35%), Postives = 153/153 (100.00%), Query Frame = 0


Query: 30  MGALSEFFSHLHTMTAVFITLLLLECVTLIRTIFGLRPNADKRVITTAQFLKLIEEKNPT 89
           MGALSEFFSHLHTMTAVF+TLLLLECVTLIRTIFGLRPNADKRVITTAQFLKLIEEKNPT
Sbjct: 1   MGALSEFFSHLHTMTAVFVTLLLLECVTLIRTIFGLRPNADKRVITTAQFLKLIEEKNPT 60

Query: 90  IRFSKKVTSSSDDQCAVCLSEFEEGEMVRKLQCNHTFHKDCLDNWLKLFFATCPLCRCKV 149
           IRFSKKVTSSSDDQCAVCLSEFEEGEMVRKLQCNHTFHKDCLDNWLKLFFATCPLCRCKV
Sbjct: 61  IRFSKKVTSSSDDQCAVCLSEFEEGEMVRKLQCNHTFHKDCLDNWLKLFFATCPLCRCKV 120

Query: 150 LPDDIVAGYRRLRDRVEYDGSDEELIFLLSALH 182
           LPDDIVAGYRRLRDRVEYDGSDEELIFLLSALH
Sbjct: 121 LPDDIVAGYRRLRDRVEYDGSDEELIFLLSALH 153

[Close]

BLAST of Cp4.1LG10g01110 vs. NCBI nr
Match: KAA0036272.1 (putative E3 ubiquitin-protein ligase RHA2B [Cucumis melo var. makuwa] >TYK12666.1 putative E3 ubiquitin-protein ligase RHA2B [Cucumis melo var. makuwa])

HSP 1 Score: 281 bits (720), Expect = 1.61e-94
Identity = 142/156 (91.03%), Postives = 144/156 (92.31%), Query Frame = 0


Query: 30  MGALSEFFSHLHTMTAVFITLLLLECVTLIRTIFGLRPNADKRVITTAQFLKLIEEKNPT 89
           MGALSEFFSHLHTMTAVF TLLLLE V LIRTIFGLRPNADKRVITTAQFLKLIE+KNPT
Sbjct: 1   MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKRVITTAQFLKLIEDKNPT 60

Query: 90  IRFSKKVTSSSDDQCAVCLSEFEEGEMVRKLQCNHTFHKDCLDNWLKLFFATCPLCRCKV 149
           IRFS KVT S  DQCAVCLSEFEEGE VRKLQCNHTFHKDCLDNWLKL FATCPLCR KV
Sbjct: 61  IRFSNKVTPSIADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKV 120

Query: 150 LPDDIVAGYRRLRDRVEYDGSDEELIFLLSALHVNN 185
           LPDDIVAGY RLRDRVEYDGSDEELIFLLSALH N+
Sbjct: 121 LPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHGNS 156

[Close]

BLAST of Cp4.1LG10g01110 vs. NCBI nr
Match: XP_038883588.1 (E3 ubiquitin-protein ligase RHA2B-like [Benincasa hispida])

HSP 1 Score: 281 bits (720), Expect = 1.85e-94
Identity = 141/153 (92.16%), Postives = 143/153 (93.46%), Query Frame = 0


Query: 30  MGALSEFFSHLHTMTAVFITLLLLECVTLIRTIFGLRPNADKRVITTAQFLKLIEEKNPT 89
           MGALSEFFSHLHTMTAVF TLLLLE V LIRTIFGLRPNADKRV+TTAQFLKLIEEKNPT
Sbjct: 1   MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKRVVTTAQFLKLIEEKNPT 60

Query: 90  IRFSKKVTSSSDDQCAVCLSEFEEGEMVRKLQCNHTFHKDCLDNWLKLFFATCPLCRCKV 149
           IRFS K+TSS  DQCAVCLSEFEEGE VRKLQCNHTFHKDCLDNWLKL FATCPLCR KV
Sbjct: 61  IRFSNKLTSSIADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKV 120

Query: 150 LPDDIVAGYRRLRDRVEYDGSDEELIFLLSALH 182
           LPDDIVAGY RLRDRVEYDGSDEELIFLLSALH
Sbjct: 121 LPDDIVAGYHRLRDRVEYDGSDEELIFLLSALH 153

[Close]

BLAST of Cp4.1LG10g01110 vs. ExPASy TrEMBL
Match: A0A6J1GGU0 (E3 ubiquitin-protein ligase RHA2B-like OS=Cucurbita moschata OX=3662 GN=LOC111453778 PE=4 SV=1)

HSP 1 Score: 310 bits (793), Expect = 5.63e-106
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0


Query: 30  MGALSEFFSHLHTMTAVFITLLLLECVTLIRTIFGLRPNADKRVITTAQFLKLIEEKNPT 89
           MGALSEFFSHLHTMTAVFITLLLLECVTLIRTIFGLRPNADKRVITTAQFLKLIEEKNPT
Sbjct: 1   MGALSEFFSHLHTMTAVFITLLLLECVTLIRTIFGLRPNADKRVITTAQFLKLIEEKNPT 60

Query: 90  IRFSKKVTSSSDDQCAVCLSEFEEGEMVRKLQCNHTFHKDCLDNWLKLFFATCPLCRCKV 149
           IRFSKKVTSSSDDQCAVCLSEFEEGEMVRKLQCNHTFHKDCLDNWLKLFFATCPLCRCKV
Sbjct: 61  IRFSKKVTSSSDDQCAVCLSEFEEGEMVRKLQCNHTFHKDCLDNWLKLFFATCPLCRCKV 120

Query: 150 LPDDIVAGYRRLRDRVEYDGSDEELIFLLSALH 182
           LPDDIVAGYRRLRDRVEYDGSDEELIFLLSALH
Sbjct: 121 LPDDIVAGYRRLRDRVEYDGSDEELIFLLSALH 153

[Close]

BLAST of Cp4.1LG10g01110 vs. ExPASy TrEMBL
Match: A0A6J1IQI4 (E3 ubiquitin-protein ligase RHA2B-like OS=Cucurbita maxima OX=3661 GN=LOC111478510 PE=4 SV=1)

HSP 1 Score: 309 bits (792), Expect = 8.00e-106
Identity = 152/153 (99.35%), Postives = 153/153 (100.00%), Query Frame = 0


Query: 30  MGALSEFFSHLHTMTAVFITLLLLECVTLIRTIFGLRPNADKRVITTAQFLKLIEEKNPT 89
           MGALSEFFSHLHTMTAVF+TLLLLECVTLIRTIFGLRPNADKRVITTAQFLKLIEEKNPT
Sbjct: 1   MGALSEFFSHLHTMTAVFVTLLLLECVTLIRTIFGLRPNADKRVITTAQFLKLIEEKNPT 60

Query: 90  IRFSKKVTSSSDDQCAVCLSEFEEGEMVRKLQCNHTFHKDCLDNWLKLFFATCPLCRCKV 149
           IRFSKKVTSSSDDQCAVCLSEFEEGEMVRKLQCNHTFHKDCLDNWLKLFFATCPLCRCKV
Sbjct: 61  IRFSKKVTSSSDDQCAVCLSEFEEGEMVRKLQCNHTFHKDCLDNWLKLFFATCPLCRCKV 120

Query: 150 LPDDIVAGYRRLRDRVEYDGSDEELIFLLSALH 182
           LPDDIVAGYRRLRDRVEYDGSDEELIFLLSALH
Sbjct: 121 LPDDIVAGYRRLRDRVEYDGSDEELIFLLSALH 153

[Close]

BLAST of Cp4.1LG10g01110 vs. ExPASy TrEMBL
Match: A0A5A7SYH1 (Putative E3 ubiquitin-protein ligase RHA2B OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G002540 PE=4 SV=1)

HSP 1 Score: 281 bits (720), Expect = 7.80e-95
Identity = 142/156 (91.03%), Postives = 144/156 (92.31%), Query Frame = 0


Query: 30  MGALSEFFSHLHTMTAVFITLLLLECVTLIRTIFGLRPNADKRVITTAQFLKLIEEKNPT 89
           MGALSEFFSHLHTMTAVF TLLLLE V LIRTIFGLRPNADKRVITTAQFLKLIE+KNPT
Sbjct: 1   MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKRVITTAQFLKLIEDKNPT 60

Query: 90  IRFSKKVTSSSDDQCAVCLSEFEEGEMVRKLQCNHTFHKDCLDNWLKLFFATCPLCRCKV 149
           IRFS KVT S  DQCAVCLSEFEEGE VRKLQCNHTFHKDCLDNWLKL FATCPLCR KV
Sbjct: 61  IRFSNKVTPSIADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKV 120

Query: 150 LPDDIVAGYRRLRDRVEYDGSDEELIFLLSALHVNN 185
           LPDDIVAGY RLRDRVEYDGSDEELIFLLSALH N+
Sbjct: 121 LPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHGNS 156

[Close]

BLAST of Cp4.1LG10g01110 vs. ExPASy TrEMBL
Match: A0A1S3B160 (probable E3 ubiquitin-protein ligase RHA2B OS=Cucumis melo OX=3656 GN=LOC103485001 PE=4 SV=1)

HSP 1 Score: 281 bits (720), Expect = 1.26e-94
Identity = 142/154 (92.21%), Postives = 143/154 (92.86%), Query Frame = 0


Query: 30  MGALSEFFSHLHTMTAVFITLLLLECVTLIRTIFGLRPNADKRVITTAQFLKLIEEKNPT 89
           MGALSEFFSHLHTMTAVF TLLLLE V LIRTIFGLRPNADKRVITTAQFLKLIE+KNPT
Sbjct: 1   MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKRVITTAQFLKLIEDKNPT 60

Query: 90  IRFSKKVTSSSDDQCAVCLSEFEEGEMVRKLQCNHTFHKDCLDNWLKLFFATCPLCRCKV 149
           IRFS KVT S  DQCAVCLSEFEEGE VRKLQCNHTFHKDCLDNWLKL FATCPLCR KV
Sbjct: 61  IRFSNKVTPSIADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKV 120

Query: 150 LPDDIVAGYRRLRDRVEYDGSDEELIFLLSALHV 183
           LPDDIVAGY RLRDRVEYDGSDEELIFLLSALHV
Sbjct: 121 LPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHV 154

[Close]

BLAST of Cp4.1LG10g01110 vs. ExPASy TrEMBL
Match: A0A6J1HG49 (E3 ubiquitin-protein ligase RHA2B-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111463642 PE=4 SV=1)

HSP 1 Score: 280 bits (716), Expect = 3.17e-94
Identity = 139/156 (89.10%), Postives = 143/156 (91.67%), Query Frame = 0


Query: 30  MGALSEFFSHLHTMTAVFITLLLLECVTLIRTIFGLRPNADKRVITTAQFLKLIEEKNPT 89
           MGALSEFFSHLHTMTAVF TLL+LE V L+RTIFGLRPN DKRVI TAQFLKLIEEKNPT
Sbjct: 1   MGALSEFFSHLHTMTAVFFTLLILELVILVRTIFGLRPNVDKRVIPTAQFLKLIEEKNPT 60

Query: 90  IRFSKKVTSSSDDQCAVCLSEFEEGEMVRKLQCNHTFHKDCLDNWLKLFFATCPLCRCKV 149
           IRFS K+TSS  DQCAVCLSEFEEGE VRKLQCNHTFHKDCLDNWLKL FATCPLCR KV
Sbjct: 61  IRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKV 120

Query: 150 LPDDIVAGYRRLRDRVEYDGSDEELIFLLSALHVNN 185
           LPDDIVAGY RLRDRVEYDGSDEELIFLLSALH N+
Sbjct: 121 LPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHGNS 156

[Close]

BLAST of Cp4.1LG10g01110 vs. TAIR 10
Match: AT1G15100.1 (RING-H2 finger A2A )

HSP 1 Score: 77.4 bits (189), Expect = 1.3e-14
Identity = 32/57 (56.14%), Postives = 40/57 (70.18%), Query Frame = 0


Query: 104 CAVCLSEFEEGEMVRKLQCNHTFHKDCLDNWLKLFFATCPLCRCKVLPDDIVAGYRR 161
           C VCLS+ +EGE VRKL+C H FHK CL+ WL  F  TCPLCR  ++ DD V+  +R
Sbjct: 86  CVVCLSKLKEGEEVRKLECRHVFHKKCLEGWLHQFNFTCPLCRSALVSDDCVSKTQR 142

[Close]

BLAST of Cp4.1LG10g01110 vs. TAIR 10
Match: AT2G04240.1 (RING/U-box superfamily protein )

HSP 1 Score: 76.6 bits (187), Expect = 2.3e-14
Identity = 34/88 (38.64%), Postives = 52/88 (59.09%), Query Frame = 0


Query: 70  DKRVITTAQFLKLIEEKNPTIRFSK--KVTSSSDDQCAVCLSEFEEGEMVRKLQCNHTFH 129
           D RV     +L+    + PT+RF    +    +D++C+VCLS+F+    + KL+C H FH
Sbjct: 67  DFRVCQPESYLEEFRNRTPTLRFESLCRCKKQADNECSVCLSKFQGDSEINKLKCGHLFH 126

Query: 130 KDCLDNWLKLFFATCPLCRCK--VLPDD 154
           K CL+ W+  +  TCPLCR    V+P+D
Sbjct: 127 KTCLEKWIDYWNITCPLCRTPLVVVPED 154

[Close]

BLAST of Cp4.1LG10g01110 vs. TAIR 10
Match: AT2G04240.2 (RING/U-box superfamily protein )

HSP 1 Score: 76.6 bits (187), Expect = 2.3e-14
Identity = 34/88 (38.64%), Postives = 52/88 (59.09%), Query Frame = 0


Query: 70  DKRVITTAQFLKLIEEKNPTIRFSK--KVTSSSDDQCAVCLSEFEEGEMVRKLQCNHTFH 129
           D RV     +L+    + PT+RF    +    +D++C+VCLS+F+    + KL+C H FH
Sbjct: 67  DFRVCQPESYLEEFRNRTPTLRFESLCRCKKQADNECSVCLSKFQGDSEINKLKCGHLFH 126

Query: 130 KDCLDNWLKLFFATCPLCRCK--VLPDD 154
           K CL+ W+  +  TCPLCR    V+P+D
Sbjct: 127 KTCLEKWIDYWNITCPLCRTPLVVVPED 154

[Close]

BLAST of Cp4.1LG10g01110 vs. TAIR 10
Match: AT2G01150.1 (RING-H2 finger protein 2B )

HSP 1 Score: 75.1 bits (183), Expect = 6.6e-14
Identity = 39/104 (37.50%), Postives = 56/104 (53.85%), Query Frame = 0


Query: 50  LLLLECVTLIRTIFGLR--PNADKRVITTAQFLKLIEEKNPTIRFSKKVTSSSDDQCAVC 109
           +LL    T  R +  L   P++   V+ T+    L ++ N    FS + + ++   C VC
Sbjct: 18  MLLALLATFFRHVRSLLLFPSSAPVVVVTSNLSVLADQLNLNRLFSYRYSDNAASDCIVC 77

Query: 110 LSEFEEGEMVRKLQCNHTFHKDCLDNWLKLFFATCPLCRCKVLP 152
           LS+ + GE VRKL C H FHK CL+ WL+     CPLCR  +LP
Sbjct: 78  LSKLKTGEEVRKLDCRHVFHKQCLEGWLQHLNFNCPLCRSPLLP 121

[Close]

BLAST of Cp4.1LG10g01110 vs. TAIR 10
Match: AT3G19950.1 (RING/U-box superfamily protein )

HSP 1 Score: 72.4 bits (176), Expect = 4.3e-13
Identity = 30/66 (45.45%), Postives = 46/66 (69.70%), Query Frame = 0


Query: 88  PTIRFSKKVTSSSDDQCAVCLSEFEEGEMVRKLQCNHTFHKDCLDNWLKLFFATCPLCRC 147
           PT++ +K +  S  +QCAVC+ EFE+G  V+++ C H FH+DCL  WL+L   +CP+CR 
Sbjct: 200 PTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLEL-HNSCPVCRF 259

Query: 148 KVLPDD 154
           ++  DD
Sbjct: 260 ELPTDD 264

The following BLAST results are available for this feature:

BLAST of Cp4.1LG10g01110 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZT50	1.9e-13	56.14	E3 ubiquitin-protein ligase RHA2A OS=Arabidopsis thaliana OX=3702 GN=RHA2A PE=1 ...	[more]
Q9SI09	3.2e-13	38.64	Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana OX=3702 GN=X...	[more]
Q9ZU51	9.3e-13	37.50	E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana OX=3702 GN=RHA2B PE=1 ...	[more]
Q8LPN7	6.0e-12	45.45	E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19...	[more]
Q9XF92	5.1e-11	44.74	Brassinosteroid-responsive RING protein 1 OS=Arabidopsis thaliana OX=3702 GN=BRH...	[more]

BLAST of Cp4.1LG10g01110 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022950774.1	1.16e-105	100.00	E3 ubiquitin-protein ligase RHA2B-like [Cucurbita moschata] >XP_023543925.1 E3 u...	[more]
KAG7034177.1	1.54e-105	100.00	E3 ubiquitin-protein ligase RHA2B [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022978570.1	1.65e-105	99.35	E3 ubiquitin-protein ligase RHA2B-like [Cucurbita maxima]	[more]
KAA0036272.1	1.61e-94	91.03	putative E3 ubiquitin-protein ligase RHA2B [Cucumis melo var. makuwa] >TYK12666....	[more]
XP_038883588.1	1.85e-94	92.16	E3 ubiquitin-protein ligase RHA2B-like [Benincasa hispida]	[more]

BLAST of Cp4.1LG10g01110 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GGU0	5.63e-106	100.00	E3 ubiquitin-protein ligase RHA2B-like OS=Cucurbita moschata OX=3662 GN=LOC11145...	[more]
A0A6J1IQI4	8.00e-106	99.35	E3 ubiquitin-protein ligase RHA2B-like OS=Cucurbita maxima OX=3661 GN=LOC1114785...	[more]
A0A5A7SYH1	7.80e-95	91.03	Putative E3 ubiquitin-protein ligase RHA2B OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A1S3B160	1.26e-94	92.21	probable E3 ubiquitin-protein ligase RHA2B OS=Cucumis melo OX=3656 GN=LOC1034850...	[more]
A0A6J1HG49	3.17e-94	89.10	E3 ubiquitin-protein ligase RHA2B-like isoform X1 OS=Cucurbita moschata OX=3662 ...	[more]

BLAST of Cp4.1LG10g01110 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G15100.1	1.3e-14	56.14	RING-H2 finger A2A	[more]
AT2G04240.1	2.3e-14	38.64	RING/U-box superfamily protein	[more]
AT2G04240.2	2.3e-14	38.64	RING/U-box superfamily protein	[more]
AT2G01150.1	6.6e-14	37.50	RING-H2 finger protein 2B	[more]
AT3G19950.1	4.3e-13	45.45	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 104..145 e-value: 2.4E-7 score: 40.4
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 102..146 e-value: 5.8E-13 score: 49.0
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 104..146 score: 12.799091
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 82..153 e-value: 4.1E-21 score: 76.0
None	No IPR available	PANTHER	PTHR47662:SF1	E3 UBIQUITIN-PROTEIN LIGASE XERICO-RELATED	coord: 30..184
None	No IPR available	PANTHER	PTHR47662	FAMILY NOT NAMED	coord: 30..184
None	No IPR available	CDD	cd16486	mRING-H2-C3H2C2D_ZSWM2	coord: 103..146 e-value: 4.14526E-18 score: 71.8741
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 93..152

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG10g01110.1	Cp4.1LG10g01110.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane