Cp4.1LG10g00350 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG10g00350
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	histone H1
Location	Cp4.1LG10: 3756668 .. 3758229 (-)
RNA-Seq Expression	Cp4.1LG10g00350
Synteny	Cp4.1LG10g00350

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTGGCACTTAAAATTAACACAGAAAACACAACCTCTCTTCATTTTATGTGCATGAAAATGCAAGCAAAAAACAAACCCCGGTTTGTATTTATCCAAATCACCCTCCGATTTCGATCTCGTAATAACGACCCGTTTTCCTCCACGTGTGCGCTCCAGATCAATTTTTCCCTACAACTTGGCTATCCATGTCCACTTGAACTGGCCAATCAGAGTTCGTACTTCCCTCCACATCCAGATTCTTCTTCCCCTATAAATTCCTCAGTGTATTAATTCGTCTCCAGCATATTCGTTAAGCGTTTGGTTCTCGTTCTGTAATTTGTGGAAATTTTGATCATGTCGTCGACTGGGGAGGCTGAAGTGAAAGTTCCGGCGGAGGATTCTCCTTCTGCGGAGGTTCCGTCTGCGGAGGAGCCGAAGGAGTCAGAGAAGCCGGTGGAGGAGAAGAAATCCAGGACTCCGAGGGTGAAGAAGCCTAGGCAGTCTAAGGTGGCTTCACATCCACCGTACTTTCAGGTAATTTAGTCCGTTGATGTTTTGATTATAGCGTGACGAGTTTGATTCTGTTGATGTTTTGATTATAGCGTGACGAGTTTGATTCTGTTGATGCTTTGATTATAGCGTGACGAGTTTGATTCTGTTGATGCTTTGATTGTAGCGTGACGAGTTTGATTCTGTTGATCTTGATTGAATCGAGTCTTTATTCTGATGAATTGCGATGTATTGGTTGTGATTTTGTTGATTTTGCAGATGATCAAGGAAGCAATCACGTCGCTCAACGAGAAGAATGGATCGAGTCCGTACGCCATAGCCAAATACATGGAGGAGAAACACAAGGAAGTTCTTCCAGCAAATTTCAGGAAAATCTTGGCGCTACAATTGAAGAATTCGACGGCTAAAGGAAAGTTAAGGAAGATCAAGGCTTCGTATGAGCTATCCGAAGCGGGAAAGAAAGACAAGAAAGCTTCGAAGGTCGCAAAAGCGAATGCAGAGAAGAAAACAAAACAGGCAAGAACTACTAGAGCTACTGCAGGGAAGAGGAAGGACGAGGCAGCAAGTAAGGCGGCGAAGGCGGTGAAGAAGGTTGTTGCAAAGAAACCGAAAAGAACTACTCCGGCGAAGCCAAAGCAGCCGAAATCAATTAGGTCCCCTGCTGCTAAGAGGGCTAAGAAAGCGGTTGCGTGAACGTAGAATCGAACAACTTGTCTTCGATTTCTCTCTTGTGAATATCTTGCCTCCGAATTACGATCATGTAGTTTGTAAATTCTTGGTTCTATGATCTTGTAGTCTTTGCTTCAACTGCAATGGAAATAAATCCTTTCTTGGTCAGAAATTCAATAAACTGAAATAGAAGAAACAGACATTCGCTTCTGGATGTTTCTCTTACGATTCACACAGATCGCCATTAAAGAACTGGTTGAATCTCAGCCTTTAGATTCAAGACACATGGCTCAGGATTGGTGAAGAATCAGAGAGAAGAATCTCAATGGAAACCCACAGATTTACATCATTATGCGTCGCCTCGTTTGATTTGAATCAATCCCATCCATGGCCTATGGTTTTG

mRNA sequence

ATTGGCACTTAAAATTAACACAGAAAACACAACCTCTCTTCATTTTATGTGCATGAAAATGCAAGCAAAAAACAAACCCCGGTTTGTATTTATCCAAATCACCCTCCGATTTCGATCTCGTAATAACGACCCGTTTTCCTCCACGTGTGCGCTCCAGATCAATTTTTCCCTACAACTTGGCTATCCATGTCCACTTGAACTGGCCAATCAGAGTTCGTACTTCCCTCCACATCCAGATTCTTCTTCCCCTATAAATTCCTCAGTGTATTAATTCGTCTCCAGCATATTCGTTAAGCGTTTGGTTCTCGTTCTGTAATTTGTGGAAATTTTGATCATGTCGTCGACTGGGGAGGCTGAAGTGAAAGTTCCGGCGGAGGATTCTCCTTCTGCGGAGGTTCCGTCTGCGGAGGAGCCGAAGGAGTCAGAGAAGCCGGTGGAGGAGAAGAAATCCAGGACTCCGAGGGTGAAGAAGCCTAGGCAGTCTAAGGTGGCTTCACATCCACCGTACTTTCAGATGATCAAGGAAGCAATCACGTCGCTCAACGAGAAGAATGGATCGAGTCCGTACGCCATAGCCAAATACATGGAGGAGAAACACAAGGAAGTTCTTCCAGCAAATTTCAGGAAAATCTTGGCGCTACAATTGAAGAATTCGACGGCTAAAGGAAAGTTAAGGAAGATCAAGGCTTCGTATGAGCTATCCGAAGCGGGAAAGAAAGACAAGAAAGCTTCGAAGGTCGCAAAAGCGAATGCAGAGAAGAAAACAAAACAGGCAAGAACTACTAGAGCTACTGCAGGGAAGAGGAAGGACGAGGCAGCAAGTAAGGCGGCGAAGGCGGTGAAGAAGGTTGTTGCAAAGAAACCGAAAAGAACTACTCCGGCGAAGCCAAAGCAGCCGAAATCAATTAGGTCCCCTGCTGCTAAGAGGGCTAAGAAAGCGGTTGCGTGAACGTAGAATCGAACAACTTGTCTTCGATTTCTCTCTTGTGAATATCTTGCCTCCGAATTACGATCATGTAGTTTGTAAATTCTTGGTTCTATGATCTTGTAGTCTTTGCTTCAACTGCAATGGAAATAAATCCTTTCTTGGTCAGAAATTCAATAAACTGAAATAGAAGAAACAGACATTCGCTTCTGGATGTTTCTCTTACGATTCACACAGATCGCCATTAAAGAACTGGTTGAATCTCAGCCTTTAGATTCAAGACACATGGCTCAGGATTGGTGAAGAATCAGAGAGAAGAATCTCAATGGAAACCCACAGATTTACATCATTATGCGTCGCCTCGTTTGATTTGAATCAATCCCATCCATGGCCTATGGTTTTG

Coding sequence (CDS)

ATGTCGTCGACTGGGGAGGCTGAAGTGAAAGTTCCGGCGGAGGATTCTCCTTCTGCGGAGGTTCCGTCTGCGGAGGAGCCGAAGGAGTCAGAGAAGCCGGTGGAGGAGAAGAAATCCAGGACTCCGAGGGTGAAGAAGCCTAGGCAGTCTAAGGTGGCTTCACATCCACCGTACTTTCAGATGATCAAGGAAGCAATCACGTCGCTCAACGAGAAGAATGGATCGAGTCCGTACGCCATAGCCAAATACATGGAGGAGAAACACAAGGAAGTTCTTCCAGCAAATTTCAGGAAAATCTTGGCGCTACAATTGAAGAATTCGACGGCTAAAGGAAAGTTAAGGAAGATCAAGGCTTCGTATGAGCTATCCGAAGCGGGAAAGAAAGACAAGAAAGCTTCGAAGGTCGCAAAAGCGAATGCAGAGAAGAAAACAAAACAGGCAAGAACTACTAGAGCTACTGCAGGGAAGAGGAAGGACGAGGCAGCAAGTAAGGCGGCGAAGGCGGTGAAGAAGGTTGTTGCAAAGAAACCGAAAAGAACTACTCCGGCGAAGCCAAAGCAGCCGAAATCAATTAGGTCCCCTGCTGCTAAGAGGGCTAAGAAAGCGGTTGCGTGA

Protein sequence

MSSTGEAEVKVPAEDSPSAEVPSAEEPKESEKPVEEKKSRTPRVKKPRQSKVASHPPYFQMIKEAITSLNEKNGSSPYAIAKYMEEKHKEVLPANFRKILALQLKNSTAKGKLRKIKASYELSEAGKKDKKASKVAKANAEKKTKQARTTRATAGKRKDEAASKAAKAVKKVVAKKPKRTTPAKPKQPKSIRSPAAKRAKKAVA

Homology

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BLAST of Cp4.1LG10g00350 vs. ExPASy Swiss-Prot
Match: P40267 (Histone H1 OS=Solanum pennellii OX=28526 PE=2 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 3.1e-41
Identity = 108/192 (56.25%), Postives = 137/192 (71.35%), Query Frame = 0


Query: 14  EDSPSAEVPSAEEPKESEKPVEEKKSRTPRVKKPRQSKVASHPPYFQMIKEAITSLNEKN 73
           E+    + P+     + + P  +KK R P+ KKP+ +K  +HPPYFQMIKEA+ +LNEK 
Sbjct: 8   ENPTVVQRPTEASKVKEQAPATDKKPRAPKEKKPKSAKAVTHPPYFQMIKEALLALNEKG 67

Query: 74  GSSPYAIAKYMEEKHKEVLPANFRKILALQLKNSTAKGKLRKIKASYELSEAGKKD---- 133
           GSSPYA+AKYME+KHK+ LPANFRKIL LQLKNS AKGKL KIKASY+LSEAGKK+    
Sbjct: 68  GSSPYAVAKYMEDKHKDELPANFRKILGLQLKNSAAKGKLIKIKASYKLSEAGKKETTTK 127

Query: 134 KKASKVAKANAEKKTKQARTTRATAGKRKDEAASKAAKAVKKVVAKKPKRTTPAKPKQPK 193
               K+ KA+++KK +  R T   A K +    +KA    KKV AK+ +++TPAK KQPK
Sbjct: 128 TSTKKLPKADSKKKPRSTRATATAAKKTEVPKKAKATPKPKKVGAKRTRKSTPAKAKQPK 187

Query: 194 SIRSPAAKRAKK 202
           SI+SPAAKRAKK
Sbjct: 188 SIKSPAAKRAKK 199

[Close]

BLAST of Cp4.1LG10g00350 vs. ExPASy Swiss-Prot
Match: P08283 (Histone H1 OS=Pisum sativum OX=3888 PE=2 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 6.6e-20
Identity = 90/186 (48.39%), Postives = 112/186 (60.22%), Query Frame = 0


Query: 20  EVPSAEEPK-ESEKPVEEKKSRTPRVKKPRQSKVASHPPYFQMIKEAITSLNEKNGSSPY 79
           EVP  EEPK E EK  + K S+  +  KPR    ASHP Y +MIK+AI SL EKNGSS Y
Sbjct: 28  EVPEKEEPKAEVEKTKKAKGSKPKKASKPRNP--ASHPTYEEMIKDAIVSLKEKNGSSQY 87

Query: 80  AIAKYMEEKHKEVLPANFRKILALQLKNSTAKGKLRKIKASYELSEAGKKDKKASKVAKA 139
           AIAK++EEK K+ LPANF+K+L   LK + A GKL K+K S++LS A KK   A   AK 
Sbjct: 88  AIAKFIEEKQKQ-LPANFKKLLLQNLKKNVASGKLIKVKGSFKLSAAAKKPAVAKPKAKT 147

Query: 140 NAEKKTKQARTTRATAGKRKDEAASKAAKAVK-KVVAKKPKRTTPAKPKQPKSIRSPAAK 199
            A+ K+ +A+     A K K +A  K   A K K VA KPK+   AKPK   +   P A 
Sbjct: 148 AAKAKSVKAK----PAAKPKAKAVVKPKVASKAKAVAAKPKKAA-AKPKTVAAKTKPTAA 205

Query: 200 RAKKAV 204
           + K  V
Sbjct: 208 KPKAVV 205

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BLAST of Cp4.1LG10g00350 vs. ExPASy Swiss-Prot
Match: Q08864 (Histone H1-I OS=Volvox carteri OX=3067 GN=H1-I PE=2 SV=3)

HSP 1 Score: 89.0 bits (219), Expect = 6.9e-17
Identity = 75/191 (39.27%), Postives = 111/191 (58.12%), Query Frame = 0


Query: 12  PAEDSPSAEVPSAEEPKESEKPVEEKKSRTPRVKKPRQSKVASHPPYFQMIKEAITSLNE 71
           PA ++P A+ P A+ PK+ + P   K+ + P+ KKP+ +   +HPPY +M+K+AIT+L E
Sbjct: 18  PAAEAPKAKAPKAKAPKQPKAPKAPKEPKAPKEKKPKAA--PTHPPYIEMVKDAITTLKE 77

Query: 72  KNGSSPYAIAKYMEEKH-KEVLPANFRKILALQLKNSTAKGKLRKIKASYELSEAGKKDK 131
           +NGSS  A+ K++E K+ K++   NF K L+  +K     GKL K+K S++LSEA K   
Sbjct: 78  RNGSSLPALKKFIENKYGKDIHDKNFAKTLSQVVKTFVKGGKLVKVKGSFKLSEALKAKA 137

Query: 132 KASKVAKANAEKKTKQARTTRATAGKRKDEAASKAAKAVKKVVAKKPKRTTPAKPKQPKS 191
           K S   KA A+ + K           +K EA  K A+AVKK  A K K   P K K+ K 
Sbjct: 138 KKSTPKKAKADGEAK----------PKKSEAKPKKAEAVKKTKAPKEKVERPKKEKKEKV 196

Query: 192 IRSPAAKRAKK 202
            +  A  +A+K
Sbjct: 198 EKKKATPKAEK 196

[Close]

BLAST of Cp4.1LG10g00350 vs. ExPASy Swiss-Prot
Match: P27806 (Histone H1 OS=Triticum aestivum OX=4565 PE=2 SV=2)

HSP 1 Score: 87.0 bits (214), Expect = 2.6e-16
Identity = 87/201 (43.28%), Postives = 113/201 (56.22%), Query Frame = 0


Query: 7   AEVKVP-AEDSPSAEVPS-AEEPKESEKPVEEKKSRTPRVKKPRQSKVASHPPYFQMIKE 66
           A++ VP  E +  A V + A +P ++ K  + KKS TP  KKPR +   +HP Y +M+ E
Sbjct: 8   ADIPVPQVEVAADAAVDTPAAKPAKAPKAAKAKKS-TPGPKKPRVT--PAHPSYAEMVSE 67

Query: 67  AITSLNEKNGSSPYAIAKYMEEKHKEVLPANFRKILALQLKNSTAKGKLRKIKASYELSE 126
           AI +L E++GSS  AI K++E+KHK  LPANFRKIL  Q+K   A GKL K+K SY+L+ 
Sbjct: 68  AIAALKERSGSSTIAIGKFIEDKHKAHLPANFRKILLTQIKKLVAAGKLTKVKGSYKLA- 127

Query: 127 AGKKDKKASKVAKANAEKKTKQARTTRATAGKRKDEAASKAAKAVKKVVAKKP-KRTTPA 186
                 KA    K     K K A   +A A  +K  A S A KA  K  AK P K    A
Sbjct: 128 ------KAPAAVKPKTATKKKPAAKPKAKAPAKKTAAKSPAKKAAAKPKAKAPAKAKAVA 187

Query: 187 KPK---QPKSIRSPAAKRAKK 202
           KPK   +PK+   P AK A K
Sbjct: 188 KPKAAAKPKAAAKPKAKAAAK 198

[Close]

BLAST of Cp4.1LG10g00350 vs. ExPASy Swiss-Prot
Match: P26568 (Histone H1.1 OS=Arabidopsis thaliana OX=3702 GN=At1g06760 PE=1 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 9.9e-16
Identity = 85/203 (41.87%), Postives = 110/203 (54.19%), Query Frame = 0


Query: 5   GEAEVKVPAEDSPSAEVPSAEEPKESEKPVEEKKSRTPRVKKPRQSKVASHPPYFQMIKE 64
           G      P  D+   + P+A+  K   K V+E K +      P++  V+SHP Y +MIK+
Sbjct: 14  GNTAADAPVTDAAVEKKPAAKGRK--TKNVKEVKEKKTVAAAPKKRTVSSHPTYEEMIKD 73

Query: 65  AITSLNEKNGSSPYAIAKYMEEKHKEVLPANFRKILALQLKNSTAKGKLRKIKASYELSE 124
           AI +L E+ GSS YAI K++EEK KE LP  FRK+L L LK   A GKL K+KAS++L  
Sbjct: 74  AIVTLKERTGSSQYAIQKFIEEKRKE-LPPTFRKLLLLNLKRLVASGKLVKVKASFKLPS 133

Query: 125 AGKKDKKASKVAKANAEKKTKQARTTRATAGKRKDEAASKAAKAVKKVVAKKPK----RT 184
           A  K       A+ +A  K K A T   T  KRK  AASKA    KK +A KPK    + 
Sbjct: 134 ASAKASSPKAAAEKSAPAKKKPA-TVAVTKAKRKVAAASKA----KKTIAVKPKTAAAKK 193

Query: 185 TPAKPKQPKSIRSPAAKRAKKAV 204
             AK K     R+ AA   +KAV
Sbjct: 194 VTAKAKAKPVPRATAAATKRKAV 208

[Close]

BLAST of Cp4.1LG10g00350 vs. NCBI nr
Match: XP_023544256.1 (histone H1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 345 bits (886), Expect = 7.77e-119
Identity = 204/204 (100.00%), Postives = 204/204 (100.00%), Query Frame = 0


Query: 1   MSSTGEAEVKVPAEDSPSAEVPSAEEPKESEKPVEEKKSRTPRVKKPRQSKVASHPPYFQ 60
           MSSTGEAEVKVPAEDSPSAEVPSAEEPKESEKPVEEKKSRTPRVKKPRQSKVASHPPYFQ
Sbjct: 1   MSSTGEAEVKVPAEDSPSAEVPSAEEPKESEKPVEEKKSRTPRVKKPRQSKVASHPPYFQ 60

Query: 61  MIKEAITSLNEKNGSSPYAIAKYMEEKHKEVLPANFRKILALQLKNSTAKGKLRKIKASY 120
           MIKEAITSLNEKNGSSPYAIAKYMEEKHKEVLPANFRKILALQLKNSTAKGKLRKIKASY
Sbjct: 61  MIKEAITSLNEKNGSSPYAIAKYMEEKHKEVLPANFRKILALQLKNSTAKGKLRKIKASY 120

Query: 121 ELSEAGKKDKKASKVAKANAEKKTKQARTTRATAGKRKDEAASKAAKAVKKVVAKKPKRT 180
           ELSEAGKKDKKASKVAKANAEKKTKQARTTRATAGKRKDEAASKAAKAVKKVVAKKPKRT
Sbjct: 121 ELSEAGKKDKKASKVAKANAEKKTKQARTTRATAGKRKDEAASKAAKAVKKVVAKKPKRT 180

Query: 181 TPAKPKQPKSIRSPAAKRAKKAVA 204
           TPAKPKQPKSIRSPAAKRAKKAVA
Sbjct: 181 TPAKPKQPKSIRSPAAKRAKKAVA 204

[Close]

BLAST of Cp4.1LG10g00350 vs. NCBI nr
Match: XP_022979052.1 (histone H1 [Cucurbita maxima])

HSP 1 Score: 336 bits (861), Expect = 5.01e-115
Identity = 198/204 (97.06%), Postives = 200/204 (98.04%), Query Frame = 0


Query: 1   MSSTGEAEVKVPAEDSPSAEVPSAEEPKESEKPVEEKKSRTPRVKKPRQSKVASHPPYFQ 60
           MSSTGE EVKVPAED+PSAEVPSAEEPKE+EKPVEEKKSRTPR KKPRQSKVASHPPYFQ
Sbjct: 1   MSSTGETEVKVPAEDAPSAEVPSAEEPKEAEKPVEEKKSRTPREKKPRQSKVASHPPYFQ 60

Query: 61  MIKEAITSLNEKNGSSPYAIAKYMEEKHKEVLPANFRKILALQLKNSTAKGKLRKIKASY 120
           MIKEAITSLNEKNGSSPYAIAKYMEEKHKEVLPANFRKILALQLKNSTAKGKLRKIKASY
Sbjct: 61  MIKEAITSLNEKNGSSPYAIAKYMEEKHKEVLPANFRKILALQLKNSTAKGKLRKIKASY 120

Query: 121 ELSEAGKKDKKASKVAKANAEKKTKQARTTRATAGKRKDEAASKAAKAVKKVVAKKPKRT 180
           ELSEAGKKDKKASKVAKANAEK TKQARTTRATAGKRKDEAASK AKAVKKVVAKKPKRT
Sbjct: 121 ELSEAGKKDKKASKVAKANAEKNTKQARTTRATAGKRKDEAASKTAKAVKKVVAKKPKRT 180

Query: 181 TPAKPKQPKSIRSPAAKRAKKAVA 204
           TPAKPKQPKSIRSPAAKRAKKAVA
Sbjct: 181 TPAKPKQPKSIRSPAAKRAKKAVA 204

[Close]

BLAST of Cp4.1LG10g00350 vs. NCBI nr
Match: XP_022950733.1 (histone H1 [Cucurbita moschata])

HSP 1 Score: 333 bits (853), Expect = 8.29e-114
Identity = 197/204 (96.57%), Postives = 200/204 (98.04%), Query Frame = 0


Query: 1   MSSTGEAEVKVPAEDSPSAEVPSAEEPKESEKPVEEKKSRTPRVKKPRQSKVASHPPYFQ 60
           MSSTGEAEVKVPAED+PS EVPSAEE KE+EKPVEEKKSRTPR KKPRQSKVASHPPYFQ
Sbjct: 1   MSSTGEAEVKVPAEDAPSVEVPSAEETKEAEKPVEEKKSRTPREKKPRQSKVASHPPYFQ 60

Query: 61  MIKEAITSLNEKNGSSPYAIAKYMEEKHKEVLPANFRKILALQLKNSTAKGKLRKIKASY 120
           MI EAITSLNEKNGSSPYAIAKYMEEKHKEVLPANFRKILALQLKNSTAKGKLRKIKASY
Sbjct: 61  MIMEAITSLNEKNGSSPYAIAKYMEEKHKEVLPANFRKILALQLKNSTAKGKLRKIKASY 120

Query: 121 ELSEAGKKDKKASKVAKANAEKKTKQARTTRATAGKRKDEAASKAAKAVKKVVAKKPKRT 180
           ELSEAGKKDKKASKVAKANAEKKTKQARTTRATAGKRKDEAASKAAKA+KKVVAKKPKRT
Sbjct: 121 ELSEAGKKDKKASKVAKANAEKKTKQARTTRATAGKRKDEAASKAAKAMKKVVAKKPKRT 180

Query: 181 TPAKPKQPKSIRSPAAKRAKKAVA 204
           TPAKPKQPKSIRSPAAKRAKKAVA
Sbjct: 181 TPAKPKQPKSIRSPAAKRAKKAVA 204

[Close]

BLAST of Cp4.1LG10g00350 vs. NCBI nr
Match: KAG7034103.1 (hypothetical protein SDJN02_03830 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 331 bits (849), Expect = 3.37e-113
Identity = 196/204 (96.08%), Postives = 199/204 (97.55%), Query Frame = 0


Query: 1   MSSTGEAEVKVPAEDSPSAEVPSAEEPKESEKPVEEKKSRTPRVKKPRQSKVASHPPYFQ 60
           MSSTGEAEVKVP ED+PS EVPSAEE KE+EKPVEEKKSRT R KKPRQSKVASHPPYFQ
Sbjct: 1   MSSTGEAEVKVPVEDAPSVEVPSAEETKEAEKPVEEKKSRTSREKKPRQSKVASHPPYFQ 60

Query: 61  MIKEAITSLNEKNGSSPYAIAKYMEEKHKEVLPANFRKILALQLKNSTAKGKLRKIKASY 120
           MIKEAITSLNEKNGSSPYAIAKYMEEKHKEVLPANFRKILALQLKNSTAKGKLRK+KASY
Sbjct: 61  MIKEAITSLNEKNGSSPYAIAKYMEEKHKEVLPANFRKILALQLKNSTAKGKLRKVKASY 120

Query: 121 ELSEAGKKDKKASKVAKANAEKKTKQARTTRATAGKRKDEAASKAAKAVKKVVAKKPKRT 180
           ELSEAGKKDKKASKVAKANAEKKTKQARTTRATAGKRKDEAASKAAKAVKKVVAKKPKRT
Sbjct: 121 ELSEAGKKDKKASKVAKANAEKKTKQARTTRATAGKRKDEAASKAAKAVKKVVAKKPKRT 180

Query: 181 TPAKPKQPKSIRSPAAKRAKKAVA 204
           TPAKPKQPKSIRSPAAKRAKKAVA
Sbjct: 181 TPAKPKQPKSIRSPAAKRAKKAVA 204

[Close]

BLAST of Cp4.1LG10g00350 vs. NCBI nr
Match: KAG6603923.1 (hypothetical protein SDJN03_04532, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 331 bits (848), Expect = 4.79e-113
Identity = 197/204 (96.57%), Postives = 199/204 (97.55%), Query Frame = 0


Query: 1   MSSTGEAEVKVPAEDSPSAEVPSAEEPKESEKPVEEKKSRTPRVKKPRQSKVASHPPYFQ 60
           MSSTGEAEVKVP ED+PS EVPSAEE KE+EK VEEKKSRTPR KKPRQSKVASHPPYFQ
Sbjct: 1   MSSTGEAEVKVPVEDAPSVEVPSAEETKEAEKLVEEKKSRTPREKKPRQSKVASHPPYFQ 60

Query: 61  MIKEAITSLNEKNGSSPYAIAKYMEEKHKEVLPANFRKILALQLKNSTAKGKLRKIKASY 120
           MIKEAITSLNEKNGSSPYAIAKYMEEKHKEVLPANFRKILALQLKNSTAKGKLRKIKASY
Sbjct: 61  MIKEAITSLNEKNGSSPYAIAKYMEEKHKEVLPANFRKILALQLKNSTAKGKLRKIKASY 120

Query: 121 ELSEAGKKDKKASKVAKANAEKKTKQARTTRATAGKRKDEAASKAAKAVKKVVAKKPKRT 180
           ELSEAGKKDKKASKVAKANAEKKTKQARTTRATAGKRKDEAASKAAKAVKKVVAKKPKRT
Sbjct: 121 ELSEAGKKDKKASKVAKANAEKKTKQARTTRATAGKRKDEAASKAAKAVKKVVAKKPKRT 180

Query: 181 TPAKPKQPKSIRSPAAKRAKKAVA 204
           TPAKPKQPKSIRSPAAKRAKKAVA
Sbjct: 181 TPAKPKQPKSIRSPAAKRAKKAVA 204

[Close]

BLAST of Cp4.1LG10g00350 vs. ExPASy TrEMBL
Match: A0A6J1IMR2 (histone H1 OS=Cucurbita maxima OX=3661 GN=LOC111478808 PE=3 SV=1)

HSP 1 Score: 336 bits (861), Expect = 2.43e-115
Identity = 198/204 (97.06%), Postives = 200/204 (98.04%), Query Frame = 0


Query: 1   MSSTGEAEVKVPAEDSPSAEVPSAEEPKESEKPVEEKKSRTPRVKKPRQSKVASHPPYFQ 60
           MSSTGE EVKVPAED+PSAEVPSAEEPKE+EKPVEEKKSRTPR KKPRQSKVASHPPYFQ
Sbjct: 1   MSSTGETEVKVPAEDAPSAEVPSAEEPKEAEKPVEEKKSRTPREKKPRQSKVASHPPYFQ 60

Query: 61  MIKEAITSLNEKNGSSPYAIAKYMEEKHKEVLPANFRKILALQLKNSTAKGKLRKIKASY 120
           MIKEAITSLNEKNGSSPYAIAKYMEEKHKEVLPANFRKILALQLKNSTAKGKLRKIKASY
Sbjct: 61  MIKEAITSLNEKNGSSPYAIAKYMEEKHKEVLPANFRKILALQLKNSTAKGKLRKIKASY 120

Query: 121 ELSEAGKKDKKASKVAKANAEKKTKQARTTRATAGKRKDEAASKAAKAVKKVVAKKPKRT 180
           ELSEAGKKDKKASKVAKANAEK TKQARTTRATAGKRKDEAASK AKAVKKVVAKKPKRT
Sbjct: 121 ELSEAGKKDKKASKVAKANAEKNTKQARTTRATAGKRKDEAASKTAKAVKKVVAKKPKRT 180

Query: 181 TPAKPKQPKSIRSPAAKRAKKAVA 204
           TPAKPKQPKSIRSPAAKRAKKAVA
Sbjct: 181 TPAKPKQPKSIRSPAAKRAKKAVA 204

[Close]

BLAST of Cp4.1LG10g00350 vs. ExPASy TrEMBL
Match: A0A6J1GFQ2 (histone H1 OS=Cucurbita moschata OX=3662 GN=LOC111453744 PE=3 SV=1)

HSP 1 Score: 333 bits (853), Expect = 4.01e-114
Identity = 197/204 (96.57%), Postives = 200/204 (98.04%), Query Frame = 0


Query: 1   MSSTGEAEVKVPAEDSPSAEVPSAEEPKESEKPVEEKKSRTPRVKKPRQSKVASHPPYFQ 60
           MSSTGEAEVKVPAED+PS EVPSAEE KE+EKPVEEKKSRTPR KKPRQSKVASHPPYFQ
Sbjct: 1   MSSTGEAEVKVPAEDAPSVEVPSAEETKEAEKPVEEKKSRTPREKKPRQSKVASHPPYFQ 60

Query: 61  MIKEAITSLNEKNGSSPYAIAKYMEEKHKEVLPANFRKILALQLKNSTAKGKLRKIKASY 120
           MI EAITSLNEKNGSSPYAIAKYMEEKHKEVLPANFRKILALQLKNSTAKGKLRKIKASY
Sbjct: 61  MIMEAITSLNEKNGSSPYAIAKYMEEKHKEVLPANFRKILALQLKNSTAKGKLRKIKASY 120

Query: 121 ELSEAGKKDKKASKVAKANAEKKTKQARTTRATAGKRKDEAASKAAKAVKKVVAKKPKRT 180
           ELSEAGKKDKKASKVAKANAEKKTKQARTTRATAGKRKDEAASKAAKA+KKVVAKKPKRT
Sbjct: 121 ELSEAGKKDKKASKVAKANAEKKTKQARTTRATAGKRKDEAASKAAKAMKKVVAKKPKRT 180

Query: 181 TPAKPKQPKSIRSPAAKRAKKAVA 204
           TPAKPKQPKSIRSPAAKRAKKAVA
Sbjct: 181 TPAKPKQPKSIRSPAAKRAKKAVA 204

[Close]

BLAST of Cp4.1LG10g00350 vs. ExPASy TrEMBL
Match: A0A0A0KJB6 (Histone H1 OS=Cucumis sativus OX=3659 GN=Csa_6G505280 PE=3 SV=1)

HSP 1 Score: 267 bits (683), Expect = 3.39e-88
Identity = 172/209 (82.30%), Postives = 180/209 (86.12%), Query Frame = 0


Query: 1   MSSTGEA-EVKVPAEDSPSAEVPSAEEPKESEKPVEEKKSRTPRVKKPRQSKVASHPPYF 60
           MSSTGEA EVKVPAED    EVP+ EEPKE EKPV+EKK R  R KKPRQSKVASHPPYF
Sbjct: 1   MSSTGEAAEVKVPAEDVAPVEVPATEEPKEVEKPVKEKKPRATREKKPRQSKVASHPPYF 60

Query: 61  QMIKEAITSLNEKNGSSPYAIAKYMEEKHKEVLPANFRKILALQLKNSTAKGKLRKIKAS 120
           QMI EAI+SLNEKNGSSPYAIAKYMEEKHK VLPANFRKILALQLKNSTAKGKL KIKAS
Sbjct: 61  QMINEAISSLNEKNGSSPYAIAKYMEEKHKAVLPANFRKILALQLKNSTAKGKLTKIKAS 120

Query: 121 YELSEAGKK-DKKASKVAKANAEKKTKQARTTRATAGKRK----DEAASKAAKAVKKVVA 180
           Y+LSE GKK D  A+KVAKANAEKKTKQARTTR T  KRK    +EA SKA   VKKVVA
Sbjct: 121 YKLSETGKKKDMNATKVAKANAEKKTKQARTTRTTGRKRKAVKTEEAVSKA---VKKVVA 180

Query: 181 KKPKRTTPAKPKQPKSIRSPAAKRAKKAV 203
           KKPKR+TPAKPKQPKSI+SPAAKRAKKAV
Sbjct: 181 KKPKRSTPAKPKQPKSIKSPAAKRAKKAV 206

[Close]

BLAST of Cp4.1LG10g00350 vs. ExPASy TrEMBL
Match: A0A5A7SK97 (Histone H1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G001460 PE=3 SV=1)

HSP 1 Score: 264 bits (675), Expect = 5.78e-87
Identity = 172/210 (81.90%), Postives = 182/210 (86.67%), Query Frame = 0


Query: 1   MSSTGEA-EVKVPAED-SPSAEVPSAEEPKESEKPVEEKKSRTPRVKKPRQSKVASHPPY 60
           M+STGEA EVKVPAED +P   VP+ EEPKE EKPV+EKK R PR KKPRQSKVASHPPY
Sbjct: 1   MTSTGEAAEVKVPAEDVAPVEVVPATEEPKEVEKPVKEKKPRAPREKKPRQSKVASHPPY 60

Query: 61  FQMIKEAITSLNEKNGSSPYAIAKYMEEKHKEVLPANFRKILALQLKNSTAKGKLRKIKA 120
           FQMI EAI+SLNEKNGSSPYAIAKYMEEKHK VLPANFRKILALQLKNSTAKGKL KIKA
Sbjct: 61  FQMINEAISSLNEKNGSSPYAIAKYMEEKHKAVLPANFRKILALQLKNSTAKGKLTKIKA 120

Query: 121 SYELSEAGKK-DKKASKVAKANAEKKTKQARTTRATAGKRK----DEAASKAAKAVKKVV 180
           SY+LSE GKK DK A+KVAKANAEK TKQARTTR T  KRK    +EA SKA   VKKVV
Sbjct: 121 SYKLSEIGKKKDKNATKVAKANAEKITKQARTTRTTGRKRKAVKKEEAVSKA---VKKVV 180

Query: 181 AKKPKRTTPAKPKQPKSIRSPAAKRAKKAV 203
           AKKPKR+TPAKPKQPKSI+SPAAKRAKKAV
Sbjct: 181 AKKPKRSTPAKPKQPKSIKSPAAKRAKKAV 207

[Close]

BLAST of Cp4.1LG10g00350 vs. ExPASy TrEMBL
Match: A0A1S3B1Z2 (histone H1 OS=Cucumis melo OX=3656 GN=LOC103485111 PE=3 SV=1)

HSP 1 Score: 264 bits (675), Expect = 5.78e-87
Identity = 172/210 (81.90%), Postives = 182/210 (86.67%), Query Frame = 0


Query: 1   MSSTGEA-EVKVPAED-SPSAEVPSAEEPKESEKPVEEKKSRTPRVKKPRQSKVASHPPY 60
           M+STGEA EVKVPAED +P   VP+ EEPKE EKPV+EKK R PR KKPRQSKVASHPPY
Sbjct: 1   MTSTGEAAEVKVPAEDVAPVEVVPATEEPKEVEKPVKEKKPRAPREKKPRQSKVASHPPY 60

Query: 61  FQMIKEAITSLNEKNGSSPYAIAKYMEEKHKEVLPANFRKILALQLKNSTAKGKLRKIKA 120
           FQMI EAI+SLNEKNGSSPYAIAKYMEEKHK VLPANFRKILALQLKNSTAKGKL KIKA
Sbjct: 61  FQMINEAISSLNEKNGSSPYAIAKYMEEKHKAVLPANFRKILALQLKNSTAKGKLTKIKA 120

Query: 121 SYELSEAGKK-DKKASKVAKANAEKKTKQARTTRATAGKRK----DEAASKAAKAVKKVV 180
           SY+LSE GKK DK A+KVAKANAEK TKQARTTR T  KRK    +EA SKA   VKKVV
Sbjct: 121 SYKLSEIGKKKDKNATKVAKANAEKITKQARTTRTTGRKRKAVKKEEAVSKA---VKKVV 180

Query: 181 AKKPKRTTPAKPKQPKSIRSPAAKRAKKAV 203
           AKKPKR+TPAKPKQPKSI+SPAAKRAKKAV
Sbjct: 181 AKKPKRSTPAKPKQPKSIKSPAAKRAKKAV 207

[Close]

BLAST of Cp4.1LG10g00350 vs. TAIR 10
Match: AT2G18050.1 (histone H1-3 )

HSP 1 Score: 116.7 bits (291), Expect = 2.2e-26
Identity = 86/171 (50.29%), Postives = 111/171 (64.91%), Query Frame = 0


Query: 40  RTPRVKKPRQSKVASHPPYFQMIKEAITSLNEKNGSSPYAIAKYMEEKHKEVLPANFRKI 99
           +TP  KKPR+ K  +HPPYFQMIKEA+  L EKNGSSPYAIAK +EEKHK +LP +FRK 
Sbjct: 9   KTPAAKKPRKPKTTTHPPYFQMIKEALMVLKEKNGSSPYAIAKKIEEKHKSLLPESFRKT 68

Query: 100 LALQLKNSTAKGKLRKIKASYELSEAGK-----KDKKASKVAKANAEKKTKQARTTRATA 159
           L+LQLKNS AKGKL KI+ASY+LS+  K     +DKK  K  K   ++ TK+ R+     
Sbjct: 69  LSLQLKNSVAKGKLVKIRASYKLSDTTKMITRQQDKKNKKNMKQEDKEITKRTRS----- 128

Query: 160 GKRKDEAASKAAKAVKKVVAKKPKRTTPAKPKQPKSIRSPAA-KRAKKAVA 205
                 ++++  K V   V K+ K+    K +QPKSI+S    K+A KA A
Sbjct: 129 ------SSTRPKKTVS--VNKQEKKRKVKKARQPKSIKSSVGKKKAMKASA 166

[Close]

BLAST of Cp4.1LG10g00350 vs. TAIR 10
Match: AT2G18050.2 (histone H1-3 )

HSP 1 Score: 88.6 bits (218), Expect = 6.4e-18
Identity = 73/150 (48.67%), Postives = 95/150 (63.33%), Query Frame = 0


Query: 61  MIKEAITSLNEKNGSSPYAIAKYMEEKHKEVLPANFRKILALQLKNSTAKGKLRKIKASY 120
           MIKEA+  L EKNGSSPYAIAK +EEKHK +LP +FRK L+LQLKNS AKGKL KI+ASY
Sbjct: 1   MIKEALMVLKEKNGSSPYAIAKKIEEKHKSLLPESFRKTLSLQLKNSVAKGKLVKIRASY 60

Query: 121 ELSEAGK-----KDKKASKVAKANAEKKTKQARTTRATAGKRKDEAASKAAKAVKKVVAK 180
           +LS+  K     +DKK  K  K   ++ TK+ R+           ++++  K V   V K
Sbjct: 61  KLSDTTKMITRQQDKKNKKNMKQEDKEITKRTRS-----------SSTRPKKTVS--VNK 120

Query: 181 KPKRTTPAKPKQPKSIRSPAA-KRAKKAVA 205
           + K+    K +QPKSI+S    K+A KA A
Sbjct: 121 QEKKRKVKKARQPKSIKSSVGKKKAMKASA 137

[Close]

BLAST of Cp4.1LG10g00350 vs. TAIR 10
Match: AT1G06760.1 (winged-helix DNA-binding transcription factor family protein )

HSP 1 Score: 85.1 bits (209), Expect = 7.1e-17
Identity = 85/203 (41.87%), Postives = 110/203 (54.19%), Query Frame = 0


Query: 5   GEAEVKVPAEDSPSAEVPSAEEPKESEKPVEEKKSRTPRVKKPRQSKVASHPPYFQMIKE 64
           G      P  D+   + P+A+  K   K V+E K +      P++  V+SHP Y +MIK+
Sbjct: 14  GNTAADAPVTDAAVEKKPAAKGRK--TKNVKEVKEKKTVAAAPKKRTVSSHPTYEEMIKD 73

Query: 65  AITSLNEKNGSSPYAIAKYMEEKHKEVLPANFRKILALQLKNSTAKGKLRKIKASYELSE 124
           AI +L E+ GSS YAI K++EEK KE LP  FRK+L L LK   A GKL K+KAS++L  
Sbjct: 74  AIVTLKERTGSSQYAIQKFIEEKRKE-LPPTFRKLLLLNLKRLVASGKLVKVKASFKLPS 133

Query: 125 AGKKDKKASKVAKANAEKKTKQARTTRATAGKRKDEAASKAAKAVKKVVAKKPK----RT 184
           A  K       A+ +A  K K A T   T  KRK  AASKA    KK +A KPK    + 
Sbjct: 134 ASAKASSPKAAAEKSAPAKKKPA-TVAVTKAKRKVAAASKA----KKTIAVKPKTAAAKK 193

Query: 185 TPAKPKQPKSIRSPAAKRAKKAV 204
             AK K     R+ AA   +KAV
Sbjct: 194 VTAKAKAKPVPRATAAATKRKAV 208

[Close]

BLAST of Cp4.1LG10g00350 vs. TAIR 10
Match: AT2G30620.2 (winged-helix DNA-binding transcription factor family protein )

HSP 1 Score: 67.4 bits (163), Expect = 1.5e-11
Identity = 72/193 (37.31%), Postives = 101/193 (52.33%), Query Frame = 0


Query: 3   STGEAEVKVPAEDSPSAEVPSAEEPKESEKPVEEKKSRTPR-VKKP-------RQSKVAS 62
           S  E  V    +   +     + E K + K  + KK+ T +  KKP       ++   +S
Sbjct: 2   SIEEENVPTTVDSGAADTTVKSPEKKPAAKGGKSKKTTTAKATKKPVKAAAPTKKKTTSS 61

Query: 63  HPPYFQMIKEAITSLNEKNGSSPYAIAKYMEEKHKEVLPANFRKILALQLKNSTAKGKLR 122
           HP Y +MIK+AI +L E+ GSS YAI K++EEKHK  LP  FRK+L + LK   A  KL 
Sbjct: 62  HPTYEEMIKDAIVTLKERTGSSQYAIQKFIEEKHKS-LPPTFRKLLLVNLKRLVASEKLV 121

Query: 123 KIKASYELSEA--GKKDKKASKV-AKANAEKKTKQARTTRATAGKRKDEAASKAAKAVKK 182
           K+KAS+++  A      K A+ V  KA    K K +RT+  T+  +K  A +K     KK
Sbjct: 122 KVKASFKIPSARSAATPKPAAPVKKKATVVAKPKASRTSTRTSPGKKVAAPAKKVAVTKK 181

Query: 183 VVAKKPKRTTPAK 185
             AK  K  +PAK
Sbjct: 182 APAKSVKVKSPAK 193

[Close]

BLAST of Cp4.1LG10g00350 vs. TAIR 10
Match: AT2G30620.1 (winged-helix DNA-binding transcription factor family protein )

HSP 1 Score: 62.4 bits (150), Expect = 4.9e-10
Identity = 82/220 (37.27%), Postives = 109/220 (49.55%), Query Frame = 0


Query: 3   STGEAEVKVPAEDSPSAEVPSAEEPKESEKPVEEKKSRTPR-VKKP-------RQSKVAS 62
           S  E  V    +   +     + E K + K  + KK+ T +  KKP       ++   +S
Sbjct: 2   SIEEENVPTTVDSGAADTTVKSPEKKPAAKGGKSKKTTTAKATKKPVKAAAPTKKKTTSS 61

Query: 63  HPPYFQMIKEAITSLNEKNGSSPYAIAKYMEEKHKEVLPANFRKILALQLKNSTAKGKLR 122
           HP Y +MIK+AI +L E+ GSS YAI K++EEKHK  LP  FRK+L + LK   A  KL 
Sbjct: 62  HPTYEEMIKDAIVTLKERTGSSQYAIQKFIEEKHKS-LPPTFRKLLLVNLKRLVASEKLV 121

Query: 123 KIKASYEL---------SEAGKKDKKASKVAKANAEKKTKQA-RTTRATAGKRKDEAASK 182
           K+KAS+++           A    KKA+ VAK   +     A    +A A   K  AA  
Sbjct: 122 KVKASFKIPSARSAATPKPAAPVKKKATVVAKPKGKVAAAVAPAKAKAAAKGTKKPAAKV 181

Query: 183 AAKAVKKVVAKKPKRTTPAKPKQPKSIRSPAAKRAKKAVA 205
            AKA  KV AK   + T AKPK     +S AA    KAVA
Sbjct: 182 VAKA--KVTAKPKAKVTAAKPKS----KSVAAVSKTKAVA 214

The following BLAST results are available for this feature:

BLAST of Cp4.1LG10g00350 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P40267	3.1e-41	56.25	Histone H1 OS=Solanum pennellii OX=28526 PE=2 SV=1	[more]
P08283	6.6e-20	48.39	Histone H1 OS=Pisum sativum OX=3888 PE=2 SV=1	[more]
Q08864	6.9e-17	39.27	Histone H1-I OS=Volvox carteri OX=3067 GN=H1-I PE=2 SV=3	[more]
P27806	2.6e-16	43.28	Histone H1 OS=Triticum aestivum OX=4565 PE=2 SV=2	[more]
P26568	9.9e-16	41.87	Histone H1.1 OS=Arabidopsis thaliana OX=3702 GN=At1g06760 PE=1 SV=1	[more]

BLAST of Cp4.1LG10g00350 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023544256.1	7.77e-119	100.00	histone H1 [Cucurbita pepo subsp. pepo]	[more]
XP_022979052.1	5.01e-115	97.06	histone H1 [Cucurbita maxima]	[more]
XP_022950733.1	8.29e-114	96.57	histone H1 [Cucurbita moschata]	[more]
KAG7034103.1	3.37e-113	96.08	hypothetical protein SDJN02_03830 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6603923.1	4.79e-113	96.57	hypothetical protein SDJN03_04532, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Cp4.1LG10g00350 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IMR2	2.43e-115	97.06	histone H1 OS=Cucurbita maxima OX=3661 GN=LOC111478808 PE=3 SV=1	[more]
A0A6J1GFQ2	4.01e-114	96.57	histone H1 OS=Cucurbita moschata OX=3662 GN=LOC111453744 PE=3 SV=1	[more]
A0A0A0KJB6	3.39e-88	82.30	Histone H1 OS=Cucumis sativus OX=3659 GN=Csa_6G505280 PE=3 SV=1	[more]
A0A5A7SK97	5.78e-87	81.90	Histone H1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G001460 PE...	[more]
A0A1S3B1Z2	5.78e-87	81.90	histone H1 OS=Cucumis melo OX=3656 GN=LOC103485111 PE=3 SV=1	[more]

BLAST of Cp4.1LG10g00350 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G18050.1	2.2e-26	50.29	histone H1-3	[more]
AT2G18050.2	6.4e-18	48.67	histone H1-3	[more]
AT1G06760.1	7.1e-17	41.87	winged-helix DNA-binding transcription factor family protein	[more]
AT2G30620.2	1.5e-11	37.31	winged-helix DNA-binding transcription factor family protein	[more]
AT2G30620.1	4.9e-10	37.27	winged-helix DNA-binding transcription factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005819	Linker histone H1/H5	PRINTS	PR00624	HISTONEH5	coord: 145..159 score: 24.44 coord: 68..85 score: 33.33 coord: 41..62 score: 29.8 coord: 177..194 score: 30.86
IPR005818	Linker histone H1/H5, domain H15	SMART	SM00526	h15plus2	coord: 52..119 e-value: 4.5E-30 score: 115.9
IPR005818	Linker histone H1/H5, domain H15	PFAM	PF00538	Linker_histone	coord: 55..117 e-value: 4.0E-17 score: 62.3
IPR005818	Linker histone H1/H5, domain H15	PROSITE	PS51504	H15	coord: 54..124 score: 28.284046
IPR005818	Linker histone H1/H5, domain H15	CDD	cd00073	H15	coord: 53..134 e-value: 3.68603E-19 score: 76.5059
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 49..143 e-value: 3.2E-19 score: 70.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 122..204
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..58
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 169..204
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 122..166
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..42
None	No IPR available	PANTHER	PTHR11467:SF50	HISTONE H1	coord: 3..204
None	No IPR available	PANTHER	PTHR11467	HISTONE H1	coord: 3..204
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 53..133

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG10g00350.1	Cp4.1LG10g00350.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030261	chromosome condensation
biological_process	GO:0045910	negative regulation of DNA recombination
biological_process	GO:0006334	nucleosome assembly
biological_process	GO:0016584	nucleosome positioning
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003690	double-stranded DNA binding
molecular_function	GO:0008168	methyltransferase activity
molecular_function	GO:0031492	nucleosomal DNA binding
molecular_function	GO:0003677	DNA binding