Cp4.1LG10g00150 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG10g00150
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	WD_REPEATS_REGION domain-containing protein
Location	Cp4.1LG10: 3790318 .. 3790683 (-)
RNA-Seq Expression	Cp4.1LG10g00150
Synteny	Cp4.1LG10g00150

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGAGAAAACCAGAAGAGTGGCCGGAAAGGCGAAGCTCAGAGGCGACGACATGAAGAACAGCAAGGCCCCACCGGCGATGACTCTGTTCGAGCGCCTCCGTGAGGCCGTTTTTCGCTTCATAATGCTATGTGCTCTTTCAAAGGCTACAAATCATCATTCTGCTGGAGCCGTCTTCCAAGACGACGTCGTTAGACGGCGGCAGTCATATCAAAACGGCGACCACCACCACAGTGAAGCTGTCGCTGATTGCATTGAATTCATCAAGAAGAAGGCGTATTCCGACGACCAGAGAATTCTCGACCGTGGATCAGTGGACGCCGATGATGATATGGCTGTGTCGCTGCCGTTGCCGGTCAGGTAA

mRNA sequence

ATGGCGGAGAAAACCAGAAGAGTGGCCGGAAAGGCGAAGCTCAGAGGCGACGACATGAAGAACAGCAAGGCCCCACCGGCGATGACTCTGTTCGAGCGCCTCCGTGAGGCCGTTTTTCGCTTCATAATGCTATGTGCTCTTTCAAAGGCTACAAATCATCATTCTGCTGGAGCCGTCTTCCAAGACGACGTCGTTAGACGGCGGCAGTCATATCAAAACGGCGACCACCACCACAGTGAAGCTGTCGCTGATTGCATTGAATTCATCAAGAAGAAGGCGTATTCCGACGACCAGAGAATTCTCGACCGTGGATCAGTGGACGCCGATGATGATATGGCTGTGTCGCTGCCGTTGCCGGTCAGGTAA

Coding sequence (CDS)

ATGGCGGAGAAAACCAGAAGAGTGGCCGGAAAGGCGAAGCTCAGAGGCGACGACATGAAGAACAGCAAGGCCCCACCGGCGATGACTCTGTTCGAGCGCCTCCGTGAGGCCGTTTTTCGCTTCATAATGCTATGTGCTCTTTCAAAGGCTACAAATCATCATTCTGCTGGAGCCGTCTTCCAAGACGACGTCGTTAGACGGCGGCAGTCATATCAAAACGGCGACCACCACCACAGTGAAGCTGTCGCTGATTGCATTGAATTCATCAAGAAGAAGGCGTATTCCGACGACCAGAGAATTCTCGACCGTGGATCAGTGGACGCCGATGATGATATGGCTGTGTCGCTGCCGTTGCCGGTCAGGTAA

Protein sequence

MAEKTRRVAGKAKLRGDDMKNSKAPPAMTLFERLREAVFRFIMLCALSKATNHHSAGAVFQDDVVRRRQSYQNGDHHHSEAVADCIEFIKKKAYSDDQRILDRGSVDADDDMAVSLPLPVR

Homology

[Close]

BLAST of Cp4.1LG10g00150 vs. NCBI nr
Match: KAG6603914.1 (hypothetical protein SDJN03_04523, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 233 bits (593), Expect = 1.31e-75
Identity = 118/121 (97.52%), Postives = 119/121 (98.35%), Query Frame = 0


Query: 1   MAEKTRRVAGKAKLRGDDMKNSKAPPAMTLFERLREAVFRFIMLCALSKATNHHSAGAVF 60
           MAEKTRRV GKAKLRGDDMKNSKAPPAMTLFERLREAVFRFIMLCALSKATNHHSAGAVF
Sbjct: 1   MAEKTRRVPGKAKLRGDDMKNSKAPPAMTLFERLREAVFRFIMLCALSKATNHHSAGAVF 60

Query: 61  QDDVVRRRQSYQNGDHHHSEAVADCIEFIKKKAYSDDQRILDRGSVDADDDMAVSLPLPV 120
           QDDVVRRRQSYQNGDHHHSEAVADCIEFIKKKAYSDDQ ILDRGSVDADDDMAVS+PLPV
Sbjct: 61  QDDVVRRRQSYQNGDHHHSEAVADCIEFIKKKAYSDDQIILDRGSVDADDDMAVSVPLPV 120

[Close]

BLAST of Cp4.1LG10g00150 vs. NCBI nr
Match: KGN49339.2 (hypothetical protein Csa_003207 [Cucumis sativus])

HSP 1 Score: 167 bits (424), Expect = 1.16e-50
Identity = 99/134 (73.88%), Postives = 105/134 (78.36%), Query Frame = 0


Query: 1   MAEKTRRVAGKAK------LR----GDDMKNSKAPPAMTLFERLREAVFRFIMLCALSKA 60
           MAEK+RRV  K K      LR    GD  K +K P  MTLFERLREAVFRFIMLCALSKA
Sbjct: 1   MAEKSRRVPRKIKPPPNLCLRKPRSGDAKKTTKPPSPMTLFERLREAVFRFIMLCALSKA 60

Query: 61  TNHH-SAGAVFQDDVV-RRRQSYQNGDHHHSEAVADCIEFIKKKAYSDDQRILDRGSVD- 120
           TNHH +AGA FQDDVV RRR SY N DHHHSEAVADCIEFIK KAYSDD+ ILDRGSVD 
Sbjct: 61  TNHHPAAGATFQDDVVVRRRHSYPNVDHHHSEAVADCIEFIKMKAYSDDEVILDRGSVDD 120

[Close]

BLAST of Cp4.1LG10g00150 vs. NCBI nr
Match: KAA0025678.1 (Transducin/WD40 repeat-like superfamily protein [Cucumis melo var. makuwa] >TYK12553.1 Transducin/WD40 repeat-like superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 140 bits (353), Expect = 2.56e-40
Identity = 81/113 (71.68%), Postives = 86/113 (76.11%), Query Frame = 0


Query: 1   MAEKTRRVAGKAKL---------RGDDMK-NSKAPPAMTLFERLREAVFRFIMLCALSKA 60
           MAEK+RRV  K K          R DD K N+K P AMTLFERLREAVFRFIMLCALSKA
Sbjct: 1   MAEKSRRVPRKIKPPANLCLRKPRSDDAKKNNKPPSAMTLFERLREAVFRFIMLCALSKA 60

Query: 61  TNHH-SAGAVFQDDVV-RRRQSYQNGDHHHSEAVADCIEFIKKKAYSDDQRIL 101
           TNHH +AGA FQDDVV RRR SY N DHHHSEAVADCIEFIK KAYSDD  ++
Sbjct: 61  TNHHPTAGAAFQDDVVVRRRHSYPNVDHHHSEAVADCIEFIKMKAYSDDHEVI 113

[Close]

BLAST of Cp4.1LG10g00150 vs. NCBI nr
Match: TKS00259.1 (hypothetical protein D5086_0000184720 [Populus alba])

HSP 1 Score: 87.4 bits (215), Expect = 3.00e-19
Identity = 52/104 (50.00%), Postives = 69/104 (66.35%), Query Frame = 0


Query: 19  MKNSKAPPAMTLFERLREAVFRFIMLCALSKATNHHSAGAVFQDDVVRRRQSYQNGDHHH 78
           +KN +  P MTL ER R+AVFR +ML ALSKAT H++AG+     V+++R SY   D HH
Sbjct: 28  IKNHRLSP-MTLLERFRQAVFRLMMLSALSKAT-HNAAGSSPDHHVMKKRSSYYPADPHH 87

Query: 79  SEAVADCIEFIKKKAYSDDQRI----LDRGSVDADDDMAVSLPL 118
           SEAVADCIEFIKK + +D + I        S DA  +MA+ +P+
Sbjct: 88  SEAVADCIEFIKKSSLTDQEEINRDSTASSSFDATGEMAMPVPV 129

[Close]

BLAST of Cp4.1LG10g00150 vs. NCBI nr
Match: PNT36221.1 (hypothetical protein POPTR_005G114500 [Populus trichocarpa])

HSP 1 Score: 87.8 bits (216), Expect = 3.38e-19
Identity = 52/104 (50.00%), Postives = 69/104 (66.35%), Query Frame = 0


Query: 19  MKNSKAPPAMTLFERLREAVFRFIMLCALSKATNHHSAGAVFQDDVVRRRQSYQNGDHHH 78
           +KN +  P MTL ER R+AVFR +ML ALSKAT H++AG+     V+++R SY   D HH
Sbjct: 46  IKNHRLSP-MTLLERFRQAVFRLMMLSALSKAT-HNAAGSSPDHHVMKKRSSYYPADPHH 105

Query: 79  SEAVADCIEFIKKKAYSDDQRIL--DRGSVDADDDMAVSLPLPV 120
           SEAVADCIEFIKK + +D + I      S   DD   +++P+PV
Sbjct: 106 SEAVADCIEFIKKSSLTDQEEINRDSTASSSFDDTGEMAMPVPV 147

[Close]

BLAST of Cp4.1LG10g00150 vs. ExPASy TrEMBL
Match: A0A0A0KGN3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G505880 PE=4 SV=1)

HSP 1 Score: 167 bits (424), Expect = 3.09e-51
Identity = 99/134 (73.88%), Postives = 105/134 (78.36%), Query Frame = 0


Query: 1   MAEKTRRVAGKAK------LR----GDDMKNSKAPPAMTLFERLREAVFRFIMLCALSKA 60
           MAEK+RRV  K K      LR    GD  K +K P  MTLFERLREAVFRFIMLCALSKA
Sbjct: 1   MAEKSRRVPRKIKPPPNLCLRKPRSGDAKKTTKPPSPMTLFERLREAVFRFIMLCALSKA 60

Query: 61  TNHH-SAGAVFQDDVV-RRRQSYQNGDHHHSEAVADCIEFIKKKAYSDDQRILDRGSVD- 120
           TNHH +AGA FQDDVV RRR SY N DHHHSEAVADCIEFIK KAYSDD+ ILDRGSVD 
Sbjct: 61  TNHHPAAGATFQDDVVVRRRHSYPNVDHHHSEAVADCIEFIKMKAYSDDEVILDRGSVDD 120

[Close]

BLAST of Cp4.1LG10g00150 vs. ExPASy TrEMBL
Match: A0A5A7SHP0 (Transducin/WD40 repeat-like superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G001350 PE=4 SV=1)

HSP 1 Score: 140 bits (353), Expect = 1.24e-40
Identity = 81/113 (71.68%), Postives = 86/113 (76.11%), Query Frame = 0


Query: 1   MAEKTRRVAGKAKL---------RGDDMK-NSKAPPAMTLFERLREAVFRFIMLCALSKA 60
           MAEK+RRV  K K          R DD K N+K P AMTLFERLREAVFRFIMLCALSKA
Sbjct: 1   MAEKSRRVPRKIKPPANLCLRKPRSDDAKKNNKPPSAMTLFERLREAVFRFIMLCALSKA 60

Query: 61  TNHH-SAGAVFQDDVV-RRRQSYQNGDHHHSEAVADCIEFIKKKAYSDDQRIL 101
           TNHH +AGA FQDDVV RRR SY N DHHHSEAVADCIEFIK KAYSDD  ++
Sbjct: 61  TNHHPTAGAAFQDDVVVRRRHSYPNVDHHHSEAVADCIEFIKMKAYSDDHEVI 113

[Close]

BLAST of Cp4.1LG10g00150 vs. ExPASy TrEMBL
Match: A0A4U5PT50 (Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000184720 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.45e-19
Identity = 52/104 (50.00%), Postives = 69/104 (66.35%), Query Frame = 0


Query: 19  MKNSKAPPAMTLFERLREAVFRFIMLCALSKATNHHSAGAVFQDDVVRRRQSYQNGDHHH 78
           +KN +  P MTL ER R+AVFR +ML ALSKAT H++AG+     V+++R SY   D HH
Sbjct: 28  IKNHRLSP-MTLLERFRQAVFRLMMLSALSKAT-HNAAGSSPDHHVMKKRSSYYPADPHH 87

Query: 79  SEAVADCIEFIKKKAYSDDQRI----LDRGSVDADDDMAVSLPL 118
           SEAVADCIEFIKK + +D + I        S DA  +MA+ +P+
Sbjct: 88  SEAVADCIEFIKKSSLTDQEEINRDSTASSSFDATGEMAMPVPV 129

[Close]

BLAST of Cp4.1LG10g00150 vs. ExPASy TrEMBL
Match: B9MXG5 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_005G114500 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.64e-19
Identity = 52/104 (50.00%), Postives = 69/104 (66.35%), Query Frame = 0


Query: 19  MKNSKAPPAMTLFERLREAVFRFIMLCALSKATNHHSAGAVFQDDVVRRRQSYQNGDHHH 78
           +KN +  P MTL ER R+AVFR +ML ALSKAT H++AG+     V+++R SY   D HH
Sbjct: 46  IKNHRLSP-MTLLERFRQAVFRLMMLSALSKAT-HNAAGSSPDHHVMKKRSSYYPADPHH 105

Query: 79  SEAVADCIEFIKKKAYSDDQRIL--DRGSVDADDDMAVSLPLPV 120
           SEAVADCIEFIKK + +D + I      S   DD   +++P+PV
Sbjct: 106 SEAVADCIEFIKKSSLTDQEEINRDSTASSSFDDTGEMAMPVPV 147

[Close]

BLAST of Cp4.1LG10g00150 vs. ExPASy TrEMBL
Match: A0A5N5MNX3 (Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_007703 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.28e-18
Identity = 46/102 (45.10%), Postives = 65/102 (63.73%), Query Frame = 0


Query: 19  MKNSKAPPAMTLFERLREAVFRFIMLCALSKATNHHSAGAVFQDDVVRRRQSYQNGDHHH 78
           +KN +  P MTL ER R+AVFR +M  ALSKAT++ +AG+     V+++R SY   D HH
Sbjct: 28  IKNHRLSP-MTLLERFRQAVFRLMMFSALSKATHNAAAGSSPDHLVMKKRSSYYPADPHH 87

Query: 79  SEAVADCIEFIKKKAYSDDQRILDRGSVDADDDMAVSLPLPV 120
           SEAVADCIEFIK+ + +D   I    +  +      ++P+PV
Sbjct: 88  SEAVADCIEFIKRSSLTDHDEINRDSTASSSSSEMAAMPVPV 128

The following BLAST results are available for this feature:

BLAST of Cp4.1LG10g00150 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG10g00150 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6603914.1	1.31e-75	97.52	hypothetical protein SDJN03_04523, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN49339.2	1.16e-50	73.88	hypothetical protein Csa_003207 [Cucumis sativus]	[more]
KAA0025678.1	2.56e-40	71.68	Transducin/WD40 repeat-like superfamily protein [Cucumis melo var. makuwa] >TYK1...	[more]
TKS00259.1	3.00e-19	50.00	hypothetical protein D5086_0000184720 [Populus alba]	[more]
PNT36221.1	3.38e-19	50.00	hypothetical protein POPTR_005G114500 [Populus trichocarpa]	[more]

BLAST of Cp4.1LG10g00150 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KGN3	3.09e-51	73.88	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G505880 PE=4 SV=1	[more]
A0A5A7SHP0	1.24e-40	71.68	Transducin/WD40 repeat-like superfamily protein OS=Cucumis melo var. makuwa OX=1...	[more]
A0A4U5PT50	1.45e-19	50.00	Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000184720 PE=4 SV=1	[more]
B9MXG5	1.64e-19	50.00	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_005G114500 PE=4 ...	[more]
A0A5N5MNX3	2.28e-18	45.10	Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_007703 PE=4 SV=1	[more]

BLAST of Cp4.1LG10g00150 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	PANTHER	PTHR35111	F10A5.9-RELATED	coord: 19..119
None	No IPR available	PANTHER	PTHR35111:SF1	EXPRESSED PROTEIN	coord: 19..119

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG10g00150.1	Cp4.1LG10g00150.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009626	plant-type hypersensitive response
biological_process	GO:0050794	regulation of cellular process