Cp4.1LG09g11700 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG09g11700
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	peptidyl-tRNA hydrolase, chloroplastic-like isoform X1
Location	Cp4.1LG09: 9797199 .. 9798339 (-)
RNA-Seq Expression	Cp4.1LG09g11700
Synteny	Cp4.1LG09g11700

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTTCTTCCATTACTGCGTCCATGTCTACTTCCTCACCTCTGGCCCCCCGATCAGCTTGCTGTGGAGGAGAACAAGCCCGTGCCACTGCCGAAGCCATGGCTGATCGTTGGCCTTGGGAATCCCGGGAAGAAGTATGAACGCACGCGCCATAATGTCCGTATGCTCCTATCTCTGCGTATACGAATTCAACTTGCTCTTTTTTTTGTACCATTTATTATTTATTCCTTTTATATCGAGCGCCAAGGATTTTTCATTTCTCTTTTTCTTTTTCGTTTACCGACTCGACTGACTGTAAAGGATAGGGAATAGGGAATAGAGGTGAATGAAGGTGAAGGCTCAGGATTGAATTCATTTAAGTATTTATGTGAGAAATTAAATTCTGTTTCACTGAAAACTATTATGCCTTATTTTCTATTGGGTTAACTGGGTATGCCGTTTATCGTGTGGAACCCCCTTAGGATAGGTTTGTGGTTATCTCGAGGAAATTATGATTTATGTTGATTTACAAAGCTGTGGAATGATATTTTATTTATTGCTGTTTTTGTTATTAGCCATACCGAGTGTTGTCTGGATGCCCTTTATTAAGACGAATTGAAGCATGGCTGATGCTATGATTAATTTTCCAGGTAGGTTTTGAGATGGTGGATGCTGTTGCTAAGATTGAAGGGATATCCATGAGTAGTGCTTCCTTCAAAGCTCTGATCGGGAAAGGTGTGCAGATTTTAACAATTCTTGATGAAATTAAAATATCTGGTTACAACTTAGAAATACATCTAGCTGCTACTTTTCTTGCCTTGAACGGACTTGCTAATAGATTACTGACTCCTTTCTTCCCTGTTTGAAGATGTGTAAACTTTTCTTCCTTATCCCTGTCATGAGATGGTTTGGCCATGAACTACAACTCGGTAAAATAACAATGGGTGCTGTTGTTTCCTACTATAAAATTCCATTGAAGCAAGTCCTTGTGGTAAATATTTTATTCCCCATGTAAGATTATCAGTTTTCTTGACAAGAGAGGAGGTTGGGCTGTGGGGTGGGTATCTATGTTATTCACTTTCTTTTTCCCCTACATATAAGCCTTGAATTGGGGTCCGTCCTTCAACAAGAGAGGAGGTTGGGCTGAAGCTTTTTCTCATG

mRNA sequence

ATGACTTCTTCCATTACTGCGTCCATGTCTACTTCCTCACCTCTGGCCCCCCGATCAGCTTGCTGTGGAGGAGAACAAGCCCGTGCCACTGCCGAAGCCATGGCTGATCGTTGGCCTTGGGAATCCCGGGAAGAAGTAGGTTTTGAGATGGTGGATGCTGTTGCTAAGATTGAAGGGATATCCATGAGTAGTGCTTCCTTCAAAGCTCTGATCGGGAAAGGTGTGCAGATTTTAACAATTCTTGATGAAATTAAAATATCTGGTTACAACTTAGAAATACATCTAGCTGCTACTTTTCTTGCCTTGAACGGACTTGCTAATAGATTACTGACTCCTTTCTTCCCTGTTTGAAGATGTGTAAACTTTTCTTCCTTATCCCTGTCATGAGATGGTTTGGCCATGAACTACAACTCGGTAAAATAACAATGGGTGCTGTTGTTTCCTACTATAAAATTCCATTGAAGCAAGTCCTTGTGGTAAATATTTTATTCCCCATGTAAGATTATCAGTTTTCTTGACAAGAGAGGAGGTTGGGCTGTGGGGTGGGTATCTATGTTATTCACTTTCTTTTTCCCCTACATATAAGCCTTGAATTGGGGTCCGTCCTTCAACAAGAGAGGAGGTTGGGCTGAAGCTTTTTCTCATG

Coding sequence (CDS)

ATGACTTCTTCCATTACTGCGTCCATGTCTACTTCCTCACCTCTGGCCCCCCGATCAGCTTGCTGTGGAGGAGAACAAGCCCGTGCCACTGCCGAAGCCATGGCTGATCGTTGGCCTTGGGAATCCCGGGAAGAAGTAGGTTTTGAGATGGTGGATGCTGTTGCTAAGATTGAAGGGATATCCATGAGTAGTGCTTCCTTCAAAGCTCTGATCGGGAAAGGTGTGCAGATTTTAACAATTCTTGATGAAATTAAAATATCTGGTTACAACTTAGAAATACATCTAGCTGCTACTTTTCTTGCCTTGAACGGACTTGCTAATAGATTACTGACTCCTTTCTTCCCTGTTTGA

Protein sequence

MTSSITASMSTSSPLAPRSACCGGEQARATAEAMADRWPWESREEVGFEMVDAVAKIEGISMSSASFKALIGKGVQILTILDEIKISGYNLEIHLAATFLALNGLANRLLTPFFPV

Homology

[Close]

BLAST of Cp4.1LG09g11700 vs. ExPASy Swiss-Prot
Match: Q8GW64 (Peptidyl-tRNA hydrolase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g18440 PE=2 SV=2)

HSP 1 Score: 48.1 bits (113), Expect = 7.6e-05
Identity = 29/75 (38.67%), Postives = 42/75 (56.00%), Query Frame = 0


Query: 42  SREEVGFEMVDAVAKIEGISMSSASFKALIGKGVQILTILDEIKISGYNLEIHLAATFLA 101
           +R  VGFEMVDA+A  EGISM++ +FKAL GKGV          I    + +    TF+ 
Sbjct: 110 TRHNVGFEMVDALADAEGISMNTVNFKALFGKGV----------IGNIPIMLAKPQTFMN 169

Query: 102 LNGLANRLLTPFFPV 117
           L+G +   +  F+ +
Sbjct: 170 LSGESVGQIVSFYKI 174

[Close]

BLAST of Cp4.1LG09g11700 vs. ExPASy Swiss-Prot
Match: Q5N9Q7 (Peptidyl-tRNA hydrolase, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0693900 PE=2 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.3e-04
Identity = 20/33 (60.61%), Postives = 27/33 (81.82%), Query Frame = 0


Query: 42  SREEVGFEMVDAVAKIEGISMSSASFKALIGKG 75
           +R  VGFEM+D +A+ EGIS+SS  FKA++GKG
Sbjct: 71  TRHNVGFEMIDVIAEAEGISLSSMQFKAMVGKG 103

[Close]

BLAST of Cp4.1LG09g11700 vs. NCBI nr
Match: KAG6572894.1 (hypothetical protein SDJN03_26781, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 98.6 bits (244), Expect = 7.65e-24
Identity = 50/56 (89.29%), Postives = 52/56 (92.86%), Query Frame = 0


Query: 17  PRSACCGGEQARATAEAMADRWPWESREEVGFEMVDAVAKIEGISMSSASFKALIG 72
           PRSA  GGEQARA A+AMADRWPWESREEVGFEMVDAVA +EGISMSSASFKALIG
Sbjct: 64  PRSARFGGEQARAAAQAMADRWPWESREEVGFEMVDAVAVVEGISMSSASFKALIG 119

[Close]

BLAST of Cp4.1LG09g11700 vs. NCBI nr
Match: XP_022994703.1 (peptidyl-tRNA hydrolase, chloroplastic-like isoform X3 [Cucurbita maxima])

HSP 1 Score: 91.7 bits (226), Expect = 2.10e-21
Identity = 60/101 (59.41%), Postives = 67/101 (66.34%), Query Frame = 0


Query: 1  MTSSITASMSTSSPLAPRSACCGGEQARATAEAMADRWPW-------------ESREEVG 60
          MTSSITASMSTSSPLAP       ++     +      PW              +R  VG
Sbjct: 1  MTSSITASMSTSSPLAPDQLAVEEKKPAPPPK------PWLIVGLGNPGKKYERTRHNVG 60

Query: 61 FEMVDAVAKIEGISMSSASFKALIGKGVQILTILDEIKISG 88
          FEM+DAVA++EGISMSSASFKALIGKGVQILTILDEIKISG
Sbjct: 61 FEMLDAVAEVEGISMSSASFKALIGKGVQILTILDEIKISG 95

[Close]

BLAST of Cp4.1LG09g11700 vs. NCBI nr
Match: XP_022994701.1 (peptidyl-tRNA hydrolase, chloroplastic-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 91.7 bits (226), Expect = 7.35e-21
Identity = 60/101 (59.41%), Postives = 67/101 (66.34%), Query Frame = 0


Query: 1   MTSSITASMSTSSPLAPRSACCGGEQARATAEAMADRWPW-------------ESREEVG 60
           MTSSITASMSTSSPLAP       ++     +      PW              +R  VG
Sbjct: 47  MTSSITASMSTSSPLAPDQLAVEEKKPAPPPK------PWLIVGLGNPGKKYERTRHNVG 106

Query: 61  FEMVDAVAKIEGISMSSASFKALIGKGVQILTILDEIKISG 88
           FEM+DAVA++EGISMSSASFKALIGKGVQILTILDEIKISG
Sbjct: 107 FEMLDAVAEVEGISMSSASFKALIGKGVQILTILDEIKISG 141

[Close]

BLAST of Cp4.1LG09g11700 vs. NCBI nr
Match: XP_022994509.1 (peptidyl-tRNA hydrolase, chloroplastic isoform X3 [Cucurbita maxima])

HSP 1 Score: 67.8 bits (164), Expect = 4.31e-11
Identity = 46/87 (52.87%), Postives = 53/87 (60.92%), Query Frame = 0


Query: 1   MTSSITASMSTSSPLAPRSACCGGEQARATAEAMADRWPW-------------ESREEVG 60
           MTSSITASMSTSSPLAP       ++     +      PW              +R  VG
Sbjct: 47  MTSSITASMSTSSPLAPDQLAVEEKKPAPPPK------PWLIVGLGNPGKKYERTRHNVG 106

Query: 61  FEMVDAVAKIEGISMSSASFKALIGKG 74
           FEM+DAVA++EGISMSSASFKALIGKG
Sbjct: 107 FEMLDAVAEVEGISMSSASFKALIGKG 127

[Close]

BLAST of Cp4.1LG09g11700 vs. NCBI nr
Match: XP_022994508.1 (peptidyl-tRNA hydrolase, chloroplastic isoform X2 [Cucurbita maxima])

HSP 1 Score: 67.8 bits (164), Expect = 6.99e-11
Identity = 46/87 (52.87%), Postives = 53/87 (60.92%), Query Frame = 0


Query: 1  MTSSITASMSTSSPLAPRSACCGGEQARATAEAMADRWPW-------------ESREEVG 60
          MTSSITASMSTSSPLAP       ++     +      PW              +R  VG
Sbjct: 1  MTSSITASMSTSSPLAPDQLAVEEKKPAPPPK------PWLIVGLGNPGKKYERTRHNVG 60

Query: 61 FEMVDAVAKIEGISMSSASFKALIGKG 74
          FEM+DAVA++EGISMSSASFKALIGKG
Sbjct: 61 FEMLDAVAEVEGISMSSASFKALIGKG 81

[Close]

BLAST of Cp4.1LG09g11700 vs. ExPASy TrEMBL
Match: A0A6J1K5W5 (peptidyl-tRNA hydrolase, chloroplastic-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111490352 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.02e-21
Identity = 60/101 (59.41%), Postives = 67/101 (66.34%), Query Frame = 0


Query: 1  MTSSITASMSTSSPLAPRSACCGGEQARATAEAMADRWPW-------------ESREEVG 60
          MTSSITASMSTSSPLAP       ++     +      PW              +R  VG
Sbjct: 1  MTSSITASMSTSSPLAPDQLAVEEKKPAPPPK------PWLIVGLGNPGKKYERTRHNVG 60

Query: 61 FEMVDAVAKIEGISMSSASFKALIGKGVQILTILDEIKISG 88
          FEM+DAVA++EGISMSSASFKALIGKGVQILTILDEIKISG
Sbjct: 61 FEMLDAVAEVEGISMSSASFKALIGKGVQILTILDEIKISG 95

[Close]

BLAST of Cp4.1LG09g11700 vs. ExPASy TrEMBL
Match: A0A6J1JZW9 (peptidyl-tRNA hydrolase, chloroplastic-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111490352 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 3.56e-21
Identity = 60/101 (59.41%), Postives = 67/101 (66.34%), Query Frame = 0


Query: 1   MTSSITASMSTSSPLAPRSACCGGEQARATAEAMADRWPW-------------ESREEVG 60
           MTSSITASMSTSSPLAP       ++     +      PW              +R  VG
Sbjct: 47  MTSSITASMSTSSPLAPDQLAVEEKKPAPPPK------PWLIVGLGNPGKKYERTRHNVG 106

Query: 61  FEMVDAVAKIEGISMSSASFKALIGKGVQILTILDEIKISG 88
           FEM+DAVA++EGISMSSASFKALIGKGVQILTILDEIKISG
Sbjct: 107 FEMLDAVAEVEGISMSSASFKALIGKGVQILTILDEIKISG 141

[Close]

BLAST of Cp4.1LG09g11700 vs. ExPASy TrEMBL
Match: A0A6J1K317 (peptidyl-tRNA hydrolase, chloroplastic isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111490211 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.09e-11
Identity = 46/87 (52.87%), Postives = 53/87 (60.92%), Query Frame = 0


Query: 1   MTSSITASMSTSSPLAPRSACCGGEQARATAEAMADRWPW-------------ESREEVG 60
           MTSSITASMSTSSPLAP       ++     +      PW              +R  VG
Sbjct: 47  MTSSITASMSTSSPLAPDQLAVEEKKPAPPPK------PWLIVGLGNPGKKYERTRHNVG 106

Query: 61  FEMVDAVAKIEGISMSSASFKALIGKG 74
           FEM+DAVA++EGISMSSASFKALIGKG
Sbjct: 107 FEMLDAVAEVEGISMSSASFKALIGKG 127

[Close]

BLAST of Cp4.1LG09g11700 vs. ExPASy TrEMBL
Match: A0A6J1K5D1 (peptidyl-tRNA hydrolase, chloroplastic isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111490211 PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 3.38e-11
Identity = 46/87 (52.87%), Postives = 53/87 (60.92%), Query Frame = 0


Query: 1  MTSSITASMSTSSPLAPRSACCGGEQARATAEAMADRWPW-------------ESREEVG 60
          MTSSITASMSTSSPLAP       ++     +      PW              +R  VG
Sbjct: 1  MTSSITASMSTSSPLAPDQLAVEEKKPAPPPK------PWLIVGLGNPGKKYERTRHNVG 60

Query: 61 FEMVDAVAKIEGISMSSASFKALIGKG 74
          FEM+DAVA++EGISMSSASFKALIGKG
Sbjct: 61 FEMLDAVAEVEGISMSSASFKALIGKG 81

[Close]

BLAST of Cp4.1LG09g11700 vs. ExPASy TrEMBL
Match: A0A6J1JW15 (peptidyl-tRNA hydrolase, mitochondrial isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111490211 PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 5.66e-11
Identity = 46/87 (52.87%), Postives = 53/87 (60.92%), Query Frame = 0


Query: 1   MTSSITASMSTSSPLAPRSACCGGEQARATAEAMADRWPW-------------ESREEVG 60
           MTSSITASMSTSSPLAP       ++     +      PW              +R  VG
Sbjct: 47  MTSSITASMSTSSPLAPDQLAVEEKKPAPPPK------PWLIVGLGNPGKKYERTRHNVG 106

Query: 61  FEMVDAVAKIEGISMSSASFKALIGKG 74
           FEM+DAVA++EGISMSSASFKALIGKG
Sbjct: 107 FEMLDAVAEVEGISMSSASFKALIGKG 127

[Close]

BLAST of Cp4.1LG09g11700 vs. TAIR 10
Match: AT1G18440.1 (Peptidyl-tRNA hydrolase family protein )

HSP 1 Score: 48.1 bits (113), Expect = 5.4e-06
Identity = 29/75 (38.67%), Postives = 42/75 (56.00%), Query Frame = 0


Query: 42  SREEVGFEMVDAVAKIEGISMSSASFKALIGKGVQILTILDEIKISGYNLEIHLAATFLA 101
           +R  VGFEMVDA+A  EGISM++ +FKAL GKGV          I    + +    TF+ 
Sbjct: 110 TRHNVGFEMVDALADAEGISMNTVNFKALFGKGV----------IGNIPIMLAKPQTFMN 169

Query: 102 LNGLANRLLTPFFPV 117
           L+G +   +  F+ +
Sbjct: 170 LSGESVGQIVSFYKI 174

The following BLAST results are available for this feature:

BLAST of Cp4.1LG09g11700 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GW64	7.6e-05	38.67	Peptidyl-tRNA hydrolase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g18...	[more]
Q5N9Q7	1.3e-04	60.61	Peptidyl-tRNA hydrolase, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 ...	[more]

BLAST of Cp4.1LG09g11700 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6572894.1	7.65e-24	89.29	hypothetical protein SDJN03_26781, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022994703.1	2.10e-21	59.41	peptidyl-tRNA hydrolase, chloroplastic-like isoform X3 [Cucurbita maxima]	[more]
XP_022994701.1	7.35e-21	59.41	peptidyl-tRNA hydrolase, chloroplastic-like isoform X1 [Cucurbita maxima]	[more]
XP_022994509.1	4.31e-11	52.87	peptidyl-tRNA hydrolase, chloroplastic isoform X3 [Cucurbita maxima]	[more]
XP_022994508.1	6.99e-11	52.87	peptidyl-tRNA hydrolase, chloroplastic isoform X2 [Cucurbita maxima]	[more]

BLAST of Cp4.1LG09g11700 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K5W5	1.02e-21	59.41	peptidyl-tRNA hydrolase, chloroplastic-like isoform X3 OS=Cucurbita maxima OX=36...	[more]
A0A6J1JZW9	3.56e-21	59.41	peptidyl-tRNA hydrolase, chloroplastic-like isoform X1 OS=Cucurbita maxima OX=36...	[more]
A0A6J1K317	2.09e-11	52.87	peptidyl-tRNA hydrolase, chloroplastic isoform X3 OS=Cucurbita maxima OX=3661 GN...	[more]
A0A6J1K5D1	3.38e-11	52.87	peptidyl-tRNA hydrolase, chloroplastic isoform X2 OS=Cucurbita maxima OX=3661 GN...	[more]
A0A6J1JW15	5.66e-11	52.87	peptidyl-tRNA hydrolase, mitochondrial isoform X1 OS=Cucurbita maxima OX=3661 GN...	[more]

BLAST of Cp4.1LG09g11700 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G18440.1	5.4e-06	38.67	Peptidyl-tRNA hydrolase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..17
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG09g11700.1	Cp4.1LG09g11700.1	mRNA