Cp4.1LG09g11680 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG09g11680
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Descriptionmitochondrial import receptor subunit TOM5 homolog
LocationCp4.1LG09: 9907237 .. 9910095 (-)
RNA-Seq ExpressionCp4.1LG09g11680
SyntenyCp4.1LG09g11680
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTGGAGTGAGGCAGAGAAGGGAAAGACTTTCTCATCCCATCTCACCTCTTATTTCAATTTCATCCCAATAAATTTTTCATTTCTGTTTGTGTATCCAGATCGATGAAAACTTGGCAATTTGCCAGCCAAATATTTTAAAATTCAACGGTTTTTCAAGTTGAGGGTAAATTCGTAAACTTGCTGTACAAGCCCACAAGCCCACAAGCCCACAAGCCCACAAGCCCACAAGCCCACAAGCCAATTCCTCTAGACTTGCAACCACACCCCAGAAACCCAAAACCCTAACGCCCTCACACGCCTTCCTCTCTGTAGTACAAGCGAAAATGGGTGACGCTTCGAGTTCGGTGAAGAAGGTGAAGAATTTTATCTTTTCCGGAACAGCTAATTCGGTGGAGACGGTGAAATCTTTTTTCAATTCCCAGGTTCATGACGACGAAAAGTGGGCCTTCAACATGGTACTCTTCTCATCATTTTGATTTCAATTCAAAAATTATTTCGTCCTTCTTAATCCGGACTTTCCCCGCAAAACTTCTTAGTTTGATTTATAGGACTGGGCTACAACCTTTTTATTGTTTTTATTTGTTTCTCTATTCGGTAGCTGAGGAAGTTTGTGAAATCATGAGATTTTTGTTCATTTCCGGCTCCAGATTACAGAATGTCGATCCTTTTGTTCATTTTGGAGTCCGACACTAGTAGACTTGAGTTATCCTCGCCGTTATAATTAAAGAAATTTCTGTGGTAAAGCTAATTTTTCTTGGAGATAGGTCTTTACAACATTTTGTCATATTAAAGAAATTAAATATTTTACAAAGCTTTTGAGGCTTATGCCTCTAAGCTTTTCTCAAGCCAACGTCATTTTTTAGCCTCGCGGTTGGCACCTTGTTTGGATCTTTAGAGGCTTGCAGCAACTCTTGATCATACACTTTTACGATTTGCACAATTAGTTTTTTATTAAATTTGAGGCTTGCTCCTCATACCACTTCAAGAGAAAAAAGCCTCGTGGCTGCCTTTAGCCTTTAGCTTATAGAATGTTTATTCAAATTGAATAATATGCAGAAAGTTATGATTTGTTCCGTCTTTCTGAGTTTTGGGTAAGAGTTTCCAATGCATGATAATTATCTTATATCTTGTGCCAGTGGAATATGCGTCATTCCATCTTATTGACCTGAATATGATAATTATCTCATCATAGCTGTCGCTGCAAGTAACTATGAAATCTGAATGCATTAAAAAACTGCTTTGGCATTAAGAAGAGGGATGCGTGCCTACAATTGGTTGTAACAGAGCATTTTTACTGCCTTATTTCATTATTTAGCGCTTGGGAGAAATATTGTTTGAGTAAGATTTCAGAGAGGAAATTCATGGTTATGTGAATTCTTTTTTTGTATGAACATCACTTCTAAAGAGATGTATCTTTGTCGTTTTTGCTTATATTTTAGTATTGTTGAATTATGCAGAACTGCATTTCAACTTCCTCTTTGTTGTTGCAGAAATTGCTTCGTGCAGCTGGAATGTTTGCAGGATCCATCCTTCTCATGCGGAATTATGGTGATCTTATGGCAATATGAGAGAGTTAACGAAGGTGCAGCAATTCTTTAGCTCATAACTTATCTCTATTTCTGAGCTTGTTATAACTCTCTTCAATTTCGGATAAGAAGTTTCAATTTTTTTTTTCTCTTGGTAATGTTGTAATCGATGAGAATGTTTCTTTTTTTTCTTCTTTGAAGTAGTTTTTTTTTTTTTTTTTTTTTCTTTTTCACCTAAAATAGATGGAAATATGAACTGAAACCCAAAACACTTGGTAAAACCTTCAAAACTAGAACACTACCTTCTTCCTCCCCAGAGAAAGAGAATTCTTTTTTGCTTTCTCACTTCAAGAATGGCATGCTGATTGTGCAGTGCAAATTTTGATGCATTGGTGCCTTGCTTTGTTCTTCTGCCATATGACAATTACAACTTGTATAAGAAAAGTACATTTCACTCGCATCAATCATCATTTATTTTGCCATTGCTCCTAAGATTAAGTCTTTAAACCTTTATGGACTCCACTTTCTAAATCTAGGATAATATCTGTCAAAAAAAAAAAGCTGATGACTGAAATAGTTCCTTCCTGTAAAGATATGAATATTCAAAACATATGAAGAGTCGTTACCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNAGTGGGATGTGATACCTGAAAATAGGCGTTCTGCTGATCCGTCATCACAGCCTTGCTTTTACAGCTTAAAGCCTGGAAAGTGACCCTATAAACATAGATGTGTGAATTGGCAATTTGGGACAGAAACGGAAGCCCAAATTGTGAAACGAAAACCCATAAAAGAGCGAAAAGCAACGAAAGCCCGACTTCTCCAAGATACTTAAAGCAGTGGAAGAGAGAAACGTGGAGACTTGGAAGACTGAAAAGCATGAGAGGGACTGAAAGCAATTTGATTTTGATGGAAGAAAAGGGGCAAAGATGATGAGATAGATGGTCATAATTGTTGTGGAAAATCATGAGATATTTTGGAGTTTTATCATAAGTTTGATGGACCAAAGAATAGAGAAGTGGAAGTAATGAAAAGGAAACCATGTGCTCAAGAAATTAGTAAGAGAAGAGAAAGCTTGTGCAAAAGATAGAAAAACATAGGTCAAGAAGAGAGCTGTGTGAGAGTAGACTGAAGTTAGTGAGGAGAGTTGATTGAAATTGCACAAATTGAAGAGAAGGGTAATGAATCATTTAACAAACTATCATCCACTCCATCACAAAGACCATTCCTTTTTGTATTTTCATCATACAAAAACTTCCACCAATCTTAATACTCAACCAAAAAA

mRNA sequence

ATGGGTGGAATCGATGAAAACTTGGCAATTTGCCAGCCAAATATTTTAAAATTCAACGTACAAGCGAAAATGGGTGACGCTTCGAGTTCGGTGAAGAAGGTGAAGAATTTTATCTTTTCCGGAACAGCTAATTCGGTGGAGACGGTGAAATCTTTTTTCAATTCCCAGGTTCATGACGACGAAAAGTGGGCCTTCAACATGAAATTGCTTCGTGCAGCTGGAATGTTTGCAGGATCCATCCTTCTCATGCGGAATTATGAATGGCATGCTGATTGTGCAGTGCAAATTTTGATGCATTGGTGCCTTGCTTTGTTCTTCTGCCATATGACAATTACAACTTGTATAAGAAAATGGGATGTGATACCTGAAAATAGGCGTTCTGCTGATCCGTCATCACAGCCTTGCTTTTACAGCTTAAAGCCTGGAAAGTGACCCTATAAACATAGATGTGTGAATTGGCAATTTGGGACAGAAACGGAAGCCCAAATTGTGAAACGAAAACCCATAAAAGAGCGAAAAGCAACGAAAGCCCGACTTCTCCAAGATACTTAAAGCAGTGGAAGAGAGAAACGTGGAGACTTGGAAGACTGAAAAGCATGAGAGGGACTGAAAGCAATTTGATTTTGATGGAAGAAAAGGGGCAAAGATGATGAGATAGATGGTCATAATTGTTGTGGAAAATCATGAGATATTTTGGAGTTTTATCATAAGTTTGATGGACCAAAGAATAGAGAAGTGGAAGTAATGAAAAGGAAACCATGTGCTCAAGAAATTAGTAAGAGAAGAGAAAGCTTGTGCAAAAGATAGAAAAACATAGGTCAAGAAGAGAGCTGTGTGAGAGTAGACTGAAGTTAGTGAGGAGAGTTGATTGAAATTGCACAAATTGAAGAGAAGGGTAATGAATCATTTAACAAACTATCATCCACTCCATCACAAAGACCATTCCTTTTTGTATTTTCATCATACAAAAACTTCCACCAATCTTAATACTCAACCAAAAAA

Coding sequence (CDS)

ATGGGTGGAATCGATGAAAACTTGGCAATTTGCCAGCCAAATATTTTAAAATTCAACGTACAAGCGAAAATGGGTGACGCTTCGAGTTCGGTGAAGAAGGTGAAGAATTTTATCTTTTCCGGAACAGCTAATTCGGTGGAGACGGTGAAATCTTTTTTCAATTCCCAGGTTCATGACGACGAAAAGTGGGCCTTCAACATGAAATTGCTTCGTGCAGCTGGAATGTTTGCAGGATCCATCCTTCTCATGCGGAATTATGAATGGCATGCTGATTGTGCAGTGCAAATTTTGATGCATTGGTGCCTTGCTTTGTTCTTCTGCCATATGACAATTACAACTTGTATAAGAAAATGGGATGTGATACCTGAAAATAGGCGTTCTGCTGATCCGTCATCACAGCCTTGCTTTTACAGCTTAAAGCCTGGAAAGTGA

Protein sequence

MGGIDENLAICQPNILKFNVQAKMGDASSSVKKVKNFIFSGTANSVETVKSFFNSQVHDDEKWAFNMKLLRAAGMFAGSILLMRNYEWHADCAVQILMHWCLALFFCHMTITTCIRKWDVIPENRRSADPSSQPCFYSLKPGK
Homology
BLAST of Cp4.1LG09g11680 vs. ExPASy Swiss-Prot
Match: Q9SD80 (Mitochondrial import receptor subunit TOM5 homolog OS=Arabidopsis thaliana OX=3702 GN=TOM5 PE=1 SV=3)

HSP 1 Score: 63.2 bits (152), Expect = 2.8e-09
Identity = 26/42 (61.90%), Postives = 37/42 (88.10%), Query Frame = 0

Query: 45 SVETVKSFFNSQVHDDEKWAFNMKLLRAAGMFAGSILLMRNY 87
          S+E +K+ ++S+VHD++KWA NMKLLRA GMFAG ++LMR+Y
Sbjct: 7  SIEKMKALWHSEVHDEQKWAVNMKLLRALGMFAGGVVLMRSY 48

BLAST of Cp4.1LG09g11680 vs. NCBI nr
Match: KAG6572899.1 (Mitochondrial import receptor subunit TOM5-like protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7012088.1 Mitochondrial import receptor subunit TOM5-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 123 bits (308), Expect = 9.39e-34
Identity = 61/63 (96.83%), Postives = 62/63 (98.41%), Query Frame = 0

Query: 24 MGDASSSVKKVKNFIFSGTANSVETVKSFFNSQVHDDEKWAFNMKLLRAAGMFAGSILLM 83
          MGDASSSVKKVKNFIFSGTANSVETVKSFFNSQVHD+EKWA NMKLLRAAGMFAGSILLM
Sbjct: 1  MGDASSSVKKVKNFIFSGTANSVETVKSFFNSQVHDEEKWALNMKLLRAAGMFAGSILLM 60

Query: 84 RNY 86
          RNY
Sbjct: 61 RNY 63

BLAST of Cp4.1LG09g11680 vs. NCBI nr
Match: XP_022924183.1 (mitochondrial import receptor subunit TOM5 homolog [Cucurbita moschata] >XP_023001126.1 mitochondrial import receptor subunit TOM5 homolog [Cucurbita maxima] >XP_023520288.1 mitochondrial import receptor subunit TOM5 homolog [Cucurbita pepo subsp. pepo] >KAG6584406.1 Mitochondrial import receptor subunit TOM5-like protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019992.1 Mitochondrial import receptor subunit TOM5-like protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 117 bits (294), Expect = 1.26e-31
Identity = 58/63 (92.06%), Postives = 61/63 (96.83%), Query Frame = 0

Query: 24 MGDASSSVKKVKNFIFSGTANSVETVKSFFNSQVHDDEKWAFNMKLLRAAGMFAGSILLM 83
          M DASSSVKKVKNF+FSGTANSVETVKSF+NSQVHD+EKWA NMKLLRAAGMFAGSILLM
Sbjct: 1  MVDASSSVKKVKNFLFSGTANSVETVKSFYNSQVHDEEKWALNMKLLRAAGMFAGSILLM 60

Query: 84 RNY 86
          RNY
Sbjct: 61 RNY 63

BLAST of Cp4.1LG09g11680 vs. NCBI nr
Match: XP_038894051.1 (mitochondrial import receptor subunit TOM5 homolog [Benincasa hispida])

HSP 1 Score: 115 bits (289), Expect = 7.26e-31
Identity = 57/63 (90.48%), Postives = 60/63 (95.24%), Query Frame = 0

Query: 24 MGDASSSVKKVKNFIFSGTANSVETVKSFFNSQVHDDEKWAFNMKLLRAAGMFAGSILLM 83
          M DASSSV KVKNF+FSGTANSVETVKSFFNSQV+D+EKWA NMKLLRAAGMFAGSILLM
Sbjct: 1  MADASSSVNKVKNFLFSGTANSVETVKSFFNSQVYDEEKWALNMKLLRAAGMFAGSILLM 60

Query: 84 RNY 86
          RNY
Sbjct: 61 RNY 63

BLAST of Cp4.1LG09g11680 vs. NCBI nr
Match: XP_004137442.1 (mitochondrial import receptor subunit TOM5 homolog [Cucumis sativus] >XP_008451171.1 PREDICTED: mitochondrial import receptor subunit TOM5 homolog [Cucumis melo] >TYJ98941.1 mitochondrial import receptor subunit TOM5-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 113 bits (282), Expect = 8.40e-30
Identity = 56/63 (88.89%), Postives = 59/63 (93.65%), Query Frame = 0

Query: 24 MGDASSSVKKVKNFIFSGTANSVETVKSFFNSQVHDDEKWAFNMKLLRAAGMFAGSILLM 83
          M D SSSVKKVKN +FSGTANSVETVKSFFNSQV+D+EKWA NMKLLRAAGMFAGSILLM
Sbjct: 1  MADDSSSVKKVKNLLFSGTANSVETVKSFFNSQVYDEEKWALNMKLLRAAGMFAGSILLM 60

Query: 84 RNY 86
          RNY
Sbjct: 61 RNY 63

BLAST of Cp4.1LG09g11680 vs. NCBI nr
Match: XP_022137624.1 (mitochondrial import receptor subunit TOM5 homolog [Momordica charantia])

HSP 1 Score: 111 bits (278), Expect = 3.40e-29
Identity = 54/63 (85.71%), Postives = 59/63 (93.65%), Query Frame = 0

Query: 24 MGDASSSVKKVKNFIFSGTANSVETVKSFFNSQVHDDEKWAFNMKLLRAAGMFAGSILLM 83
          M DASSS+KKVKNFI SGT+NSVETV+SF NSQ+HD+EKWA NMKLLRAAGMFAGSILLM
Sbjct: 1  MADASSSMKKVKNFICSGTSNSVETVRSFLNSQIHDEEKWALNMKLLRAAGMFAGSILLM 60

Query: 84 RNY 86
          RNY
Sbjct: 61 RNY 63

BLAST of Cp4.1LG09g11680 vs. ExPASy TrEMBL
Match: A0A6J1KHR6 (mitochondrial import receptor subunit TOM5 homolog OS=Cucurbita maxima OX=3661 GN=LOC111495362 PE=4 SV=1)

HSP 1 Score: 117 bits (294), Expect = 6.11e-32
Identity = 58/63 (92.06%), Postives = 61/63 (96.83%), Query Frame = 0

Query: 24 MGDASSSVKKVKNFIFSGTANSVETVKSFFNSQVHDDEKWAFNMKLLRAAGMFAGSILLM 83
          M DASSSVKKVKNF+FSGTANSVETVKSF+NSQVHD+EKWA NMKLLRAAGMFAGSILLM
Sbjct: 1  MVDASSSVKKVKNFLFSGTANSVETVKSFYNSQVHDEEKWALNMKLLRAAGMFAGSILLM 60

Query: 84 RNY 86
          RNY
Sbjct: 61 RNY 63

BLAST of Cp4.1LG09g11680 vs. ExPASy TrEMBL
Match: A0A6J1EBN7 (mitochondrial import receptor subunit TOM5 homolog OS=Cucurbita moschata OX=3662 GN=LOC111431705 PE=4 SV=1)

HSP 1 Score: 117 bits (294), Expect = 6.11e-32
Identity = 58/63 (92.06%), Postives = 61/63 (96.83%), Query Frame = 0

Query: 24 MGDASSSVKKVKNFIFSGTANSVETVKSFFNSQVHDDEKWAFNMKLLRAAGMFAGSILLM 83
          M DASSSVKKVKNF+FSGTANSVETVKSF+NSQVHD+EKWA NMKLLRAAGMFAGSILLM
Sbjct: 1  MVDASSSVKKVKNFLFSGTANSVETVKSFYNSQVHDEEKWALNMKLLRAAGMFAGSILLM 60

Query: 84 RNY 86
          RNY
Sbjct: 61 RNY 63

BLAST of Cp4.1LG09g11680 vs. ExPASy TrEMBL
Match: A0A5D3BJP0 (Mitochondrial import receptor subunit TOM5-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G001420 PE=4 SV=1)

HSP 1 Score: 113 bits (282), Expect = 4.07e-30
Identity = 56/63 (88.89%), Postives = 59/63 (93.65%), Query Frame = 0

Query: 24 MGDASSSVKKVKNFIFSGTANSVETVKSFFNSQVHDDEKWAFNMKLLRAAGMFAGSILLM 83
          M D SSSVKKVKN +FSGTANSVETVKSFFNSQV+D+EKWA NMKLLRAAGMFAGSILLM
Sbjct: 1  MADDSSSVKKVKNLLFSGTANSVETVKSFFNSQVYDEEKWALNMKLLRAAGMFAGSILLM 60

Query: 84 RNY 86
          RNY
Sbjct: 61 RNY 63

BLAST of Cp4.1LG09g11680 vs. ExPASy TrEMBL
Match: A0A0A0LSV3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G039240 PE=4 SV=1)

HSP 1 Score: 113 bits (282), Expect = 4.07e-30
Identity = 56/63 (88.89%), Postives = 59/63 (93.65%), Query Frame = 0

Query: 24 MGDASSSVKKVKNFIFSGTANSVETVKSFFNSQVHDDEKWAFNMKLLRAAGMFAGSILLM 83
          M D SSSVKKVKN +FSGTANSVETVKSFFNSQV+D+EKWA NMKLLRAAGMFAGSILLM
Sbjct: 1  MADDSSSVKKVKNLLFSGTANSVETVKSFFNSQVYDEEKWALNMKLLRAAGMFAGSILLM 60

Query: 84 RNY 86
          RNY
Sbjct: 61 RNY 63

BLAST of Cp4.1LG09g11680 vs. ExPASy TrEMBL
Match: A0A1S3BQV4 (mitochondrial import receptor subunit TOM5 homolog OS=Cucumis melo OX=3656 GN=LOC103492520 PE=4 SV=1)

HSP 1 Score: 113 bits (282), Expect = 4.07e-30
Identity = 56/63 (88.89%), Postives = 59/63 (93.65%), Query Frame = 0

Query: 24 MGDASSSVKKVKNFIFSGTANSVETVKSFFNSQVHDDEKWAFNMKLLRAAGMFAGSILLM 83
          M D SSSVKKVKN +FSGTANSVETVKSFFNSQV+D+EKWA NMKLLRAAGMFAGSILLM
Sbjct: 1  MADDSSSVKKVKNLLFSGTANSVETVKSFFNSQVYDEEKWALNMKLLRAAGMFAGSILLM 60

Query: 84 RNY 86
          RNY
Sbjct: 61 RNY 63

BLAST of Cp4.1LG09g11680 vs. TAIR 10
Match: AT5G08040.1 (mitochondrial import receptor subunit TOM5 homolog )

HSP 1 Score: 63.2 bits (152), Expect = 2.0e-10
Identity = 26/42 (61.90%), Postives = 37/42 (88.10%), Query Frame = 0

Query: 45 SVETVKSFFNSQVHDDEKWAFNMKLLRAAGMFAGSILLMRNY 87
          S+E +K+ ++S+VHD++KWA NMKLLRA GMFAG ++LMR+Y
Sbjct: 7  SIEKMKALWHSEVHDEQKWAVNMKLLRALGMFAGGVVLMRSY 48

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9SD802.8e-0961.90Mitochondrial import receptor subunit TOM5 homolog OS=Arabidopsis thaliana OX=37... [more]
Match NameE-valueIdentityDescription
KAG6572899.19.39e-3496.83Mitochondrial import receptor subunit TOM5-like protein, partial [Cucurbita argy... [more]
XP_022924183.11.26e-3192.06mitochondrial import receptor subunit TOM5 homolog [Cucurbita moschata] >XP_0230... [more]
XP_038894051.17.26e-3190.48mitochondrial import receptor subunit TOM5 homolog [Benincasa hispida][more]
XP_004137442.18.40e-3088.89mitochondrial import receptor subunit TOM5 homolog [Cucumis sativus] >XP_0084511... [more]
XP_022137624.13.40e-2985.71mitochondrial import receptor subunit TOM5 homolog [Momordica charantia][more]
Match NameE-valueIdentityDescription
A0A6J1KHR66.11e-3292.06mitochondrial import receptor subunit TOM5 homolog OS=Cucurbita maxima OX=3661 G... [more]
A0A6J1EBN76.11e-3292.06mitochondrial import receptor subunit TOM5 homolog OS=Cucurbita moschata OX=3662... [more]
A0A5D3BJP04.07e-3088.89Mitochondrial import receptor subunit TOM5-like protein OS=Cucumis melo var. mak... [more]
A0A0A0LSV34.07e-3088.89Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G039240 PE=4 SV=1[more]
A0A1S3BQV44.07e-3088.89mitochondrial import receptor subunit TOM5 homolog OS=Cucumis melo OX=3656 GN=LO... [more]
Match NameE-valueIdentityDescription
AT5G08040.12.0e-1061.90mitochondrial import receptor subunit TOM5 homolog [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR034553Mitochondrial import receptor subunit TOM5 homologue, viridiplantaePANTHERPTHR37251MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM5 HOMOLOGcoord: 42..86
NoneNo IPR availablePANTHERPTHR37251:SF1MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM5 HOMOLOGcoord: 42..86

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG09g11680.1Cp4.1LG09g11680.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005742 mitochondrial outer membrane translocase complex