Cp4.1LG09g11610 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG09g11610
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Single-stranded DNA-binding protein
Location	Cp4.1LG09: 9814920 .. 9818466 (-)
RNA-Seq Expression	Cp4.1LG09g11610
Synteny	Cp4.1LG09g11610

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATATATCACAAGGGTTCTAGGGTTTAAGGCATTCCCTAAATTTCAGATTTTTCTCTCTCATTCACCAAGACCATGACCTCCTCCATGGCGGCTCTCTCATCAAGAACGCTCTGCCGCTCTTTGCTCCCCACTTCTAAACCTTCTCACATACTTCCCCTGTCCAATTGCGCCAACAATCTTTTCGTCCGCTCCGTCTCAGACACCAGCGGCTCCAGTATTGATTCGGACACCGAATTGGACTCACACTCAGTACCTAATNATACATACATACATACATATATATATATATATATATATCACAAGGGTTCTAGGGTTTAAGGCATTCCCTAAATTTCAGATTTTTCTCTCTCATTCACCAAGACCATGACCTCCTCCATGGCGGCTCTCTCATCAAGAACGCTCTGCCGCTCTTTGCTCCCCACTTCTAAACCTTCTCACATACTTCCCCTGTCCAATTGCGCCAACAATCTTTTCGTCCGCTCCGTCTCAGACACCAGCGGCTCCAGTATTGATTCGGACACCGAATTGGACTCACACTCAGTACCTAATCGTTCTTCTGCTTCACAATCGTCAACCCAGACGAGACCGGTCTATAATCGACCTCTCGAAAATGGCCTCGACGCTGGCATTTATAAGGTGGTACATTCATGTGTTGGGAATTTCGAATCCTCTGTTCTTTTGTTTTGATAACTAACTTTGTGTGTTTGGGCGAAGGAAGGCTATTCTGGTGGGTCAGGTGGGGCAGAGGCCATTGCAGAAGCAGCTGAAGAGTGGGAGAACGGTGACACTGTTATCAGTTGGGACGGGTGGCATTCGTAACAATCGGAGACCCTTGGCTAGTGAGGAACCCAAAGAGTATGCAAATCGGTGCGCAGTTCAGTGGCACCGGGTTTCGATTTATCCTCTGAGACTGGGCGATGTTGCCATGAAGCACGTCGTACCTGGGTAAGCTTTTCAGTTTTCACCATTCATCAATCTATCTATCTGAGATACATGGAGCATGTCATACAAATTGGTCCATATTTTGTGTGTTTTCAGTTCAATGTTGTATTTGGAGGGGAATTTGGAAACCAAAATTTTCAGTGATCCAACAACTGGTATTGTTCGACGTATTAGAGAAATTGCCATTCGTCGAAATGGTAAACCTCTGGTATTTTTGAAGTTTCTGGGTACGTAGGAGGGATTACTATGTTCTCCGTTGACAAAGTTTGGTTGTGATGTATGTAGGGCGCCTTGTATTTTTGGGCAAAGGAGGAAATGATGCTCAGCCGTCGACTCAATCAGAGTTCAAAGGTGTTGGCTATTACTAACAAATGTTGTTCCCAACTTTCTCATCTCAACCTTGGAATCTTATTGTTTTTCAATCATATAACAACTCAGTTATTACTTCTTTGATGATCATTGATGCTTGCCTGTATAGTTGCAGTGCTCATGTGCATAGCTCAACAATCTAGTAAACGCACAAGCCAAATGTATAATTATAATCGTGAAAACACAAAAATAAGAAACATCTATGAATAAGAAACATCTATTTCATTTACAATCGTGAAAACACAAAAATAAGAAACATCTATTTCATTTACAATCGTGAATTTAAATAAGTAAATAAATAAATAATTATAAATTTATTAAAAAAAATCAAATAGTTATTAAAGAAAAATATCTGGAGAAGATGAAAAAAGGAGAGTTTTTTTTGGAAGCATCATAGATTCATAATATAACATAAAGGAAAGAGGTCCTCTACCTTCCGATTGCATTGGGGCCGTAGTTTGACCCACATTACTCTGTTATCATTATGCACTCTCTCGTGTGTGGTTATCTTTTCGTGTATTGCTTATCCACGAAATCCCCTACGCCGCCCCGAAAGGCTTACAAAGGCTGAAAGAATTGAAGCACTGAGATCACCAAACCAAACCAAACCCAGGAAGGAATACTTGGAATCTCAGGACATGTTGCGAATCCCCAAATTTCATCATCCCCCGAACAAGCTTCAACACCCTCCCACTCCTCCTCCTCCTCTTCATACTCAAAACTTCCCCACGTCCCCAAATCTTCCATTCATCAACCAATGTTGCACAATCTCCCGCCGTAAGCTCACCGTTGGAAGCAATTCCCTCTTGCTTCTTCTCTTTGGCTCTCAGATTCTAGACCCTTTTTACAACTCCTCCAAAGCAGAGGCTGAAGAAAGCTTGGGTGAAAATGAGCTAGACCCTTTTTACAACTCCTCCAAAGCAGAGGCTGAAGAAAGCTTGGGTGAAAATGAGCAAGAATTACAGAGATCAGAGAGTTCCAACGATGTCCCTCCTCCTTGCACAGAAAAGAGCCCCACCAAGCGTGCATTTCTTGATATCTCCATTGATGGACAGCCTGCTGGTCGCATTATCATTGGCCTTTATGGCAATGACGCTCCTGCAGGAGTTGCTAGATTCAGTAACCTTGTGAGCGGAGCTGCAGGGGTTTCTTACAGAAGAAAAGACTTTGTGAAGATCACATCAAACTATGTTCAAAACAGTGGAGTGAGATCTTATGGTGTGGATGTTGAGCTTGCAAAGAGGACAGGGGGGAATGAGTTAGCATCCGAAACTCTTAAAGATGAATGGGCGAGTGTCAATGAGAAGTGCCCTGGTATTAAGAACTTGGCTGGAACTGTGGGAATCATTGTGAGAGACCCTTTGAAACCCCCACCCAAGTTGAAGTTGGTAGCCCGGAAAGGGAAGCTGGAGGTGGATCAGGAAGAGGTCGGAACTGAACCGAATGGGACCGAGTTCACGATTTCTGTCAAGGATTCGCCAGAGCTGGACAATTCGACCCTGGTGATTGGAACAGTTTTGGAAGGGATGCAAGTTGCGGAAAGGATTGCTCAAGTGAAGACAGTGAAAGACAACACTACTTCTCCTTACTTCAGGTAAACTTCATATTTGCTAACATAAATTTATGGGTTTGGTATGAATGAAGTAGGACTTGATAGTGTGAGGTCTGGATTGATGAACAGGGTGGCAAAGCTAATAGGCGATAAGAGAGCTGTTGTTGCAGAAAGAGGCTTCAACCGCCCTTATTCAAAAGTGGTCGTCACAAACTGTGGGTTGCTAGAGCTAGAGTAATGACATGGTTGTCCTCCCAGTTTTGCCCTTTTCTAAATTCAACTATGCCCTTTATGAATGAATGAGGTATTCTATGTCATACCAAAAATTTGAAATATTATTATCTCATAGGCTCATAAAGTTGATTCATCGTATAATTTACGAGAGACGGATTATGTTTCAAATTAATAGCCCTTCACTTTGACACTCTAACTTCAATACTATGTTCCAAAAAACAGCAAACTGCCAATAGAAGCAACCTCAAAAAATTACTTTACACTAATACAAAATCCCATAACTAGTTATATAGATAATGATATGACAGCAGAGATATCATTGTAGAAGGAACTCAATTGGGGAAGGCATGACATGAAAAACCCATCTCCAAAGGGTGTATGTATCCCATACCTTAGAAGAGGCAGCAATTTAATCCCGGAAGCTCTGTCAAGTAACGAGCCTAGCGCTT

mRNA sequence

TATATATCACAAGGGTTCTAGGGTTTAAGGCATTCCCTAAATTTCAGATTTTTCTCTCTCATTCACCAAGACCATGACCTCCTCCATGGCGGCTCTCTCATCAAGAACGCTCTGCCGCTCTTTGCTCCCCACTTCTAAACCTTCTCACATACTTCCCCTGTCCAATTGCGCCAACAATCTTTTCGTCCGCTCCGTCTCAGACACCAGCGGCTCCAGTATTGATTCGGACACCGAATTGGACTCACACTCAGTACCTAATNATACATACATACATACATATATATATATATATATATATCACAAGGGTTCTAGGGTTTAAGGCATTCCCTAAATTTCAGATTTTTCTCTCTCATTCACCAAGACCATGACCTCCTCCATGGCGGCTCTCTCATCAAGAACGCTCTGCCGCTCTTTGCTCCCCACTTCTAAACCTTCTCACATACTTCCCCTGTCCAATTGCGCCAACAATCTTTTCGTCCGCTCCGTCTCAGACACCAGCGGCTCCAGTATTGATTCGGACACCGAATTGGACTCACACTCAGTACCTAATCGTTCTTCTGCTTCACAATCGTCAACCCAGACGAGACCGGTCTATAATCGACCTCTCGAAAATGGCCTCGACGCTGGCATTTATAAGGTGGCTATTCTGGTGGGTCAGGTGGGGCAGAGGCCATTGCAGAAGCAGCTGAAGAGTGGGAGAACGGTGACACTGTTATCAGTTGGGACGGGTGGCATTCGTAACAATCGGAGACCCTTGGCTAGTGAGGAACCCAAAGAGTATGCAAATCGGTGCGCAGTTCAGTGGCACCGGGTTTCGATTTATCCTCTGAGACTGGGCGATGTTGCCATGAAGCACGTCGTACCTGGTTCAATGTTGTATTTGGAGGGGAATTTGGAAACCAAAATTTTCAGTGATCCAACAACTGGTATTGTTCGACGTATTAGAGAAATTGCCATTCGTCGAAATGGGCGCCTTGTATTTTTGGGCAAAGGAGGAAATGATGCTCAGCCGTCGACTCAATCAGAGTTCAAAGGTGTTGGCTATTACTAACAAATGTTGTTCCCAACTTTCTCATCTCAACCTTGGAATCTTATTGTTTTTCAATCATATAACAACTCAGTTATTACTTCTTTGATGATCATTGATGCTTGCCTGTATAGTTGCAGTGCTCATGTGCATAGCTCAACAATCTAGTAAACGCACAAGCCAAATGTATAATTATAATCGTGAAAACACAAAAATAAGAAACATCTATGAATAAGAAACATCTATTTCATTTACAATCGTGAAAACACAAAAATAAGAAACATCTATTTCATTTACAATCGTGAATTTAAATAAGTAAATAAATAAATAATTATAAATTTATTAAAAAAAATCAAATAGTTATTAAAGAAAAATATCTGGAGAAGATGAAAAAAGGAGAGTTTTTTTTGGAAGCATCATAGATTCATAATATAACATAAAGGAAAGAGGTCCTCTACCTTCCGATTGCATTGGGGCCGTAGTTTGACCCACATTACTCTGTTATCATTATGCACTCTCTCGTGTGTGGTTATCTTTTCGTGTATTGCTTATCCACGAAATCCCCTACGCCGCCCCGAAAGGCTTACAAAGGCTGAAAGAATTGAAGCACTGAGATCACCAAACCAAACCAAACCCAGGAAGGAATACTTGGAATCTCAGGACATGTTGCGAATCCCCAAATTTCATCATCCCCCGAACAAGCTTCAACACCCTCCCACTCCTCCTCCTCCTCTTCATACTCAAAACTTCCCCACGTCCCCAAATCTTCCATTCATCAACCAATGTTGCACAATCTCCCGCCGTAAGCTCACCGTTGGAAGCAATTCCCTCTTGCTTCTTCTCTTTGGCTCTCAGATTCTAGACCCTTTTTACAACTCCTCCAAAGCAGAGGCTGAAGAAAGCTTGGGTGAAAATGAGCTAGACCCTTTTTACAACTCCTCCAAAGCAGAGGCTGAAGAAAGCTTGGGTGAAAATGAGCAAGAATTACAGAGATCAGAGAGTTCCAACGATGTCCCTCCTCCTTGCACAGAAAAGAGCCCCACCAAGCGTGCATTTCTTGATATCTCCATTGATGGACAGCCTGCTGGTCGCATTATCATTGGCCTTTATGGCAATGACGCTCCTGCAGGAGTTGCTAGATTCAGTAACCTTGTGAGCGGAGCTGCAGGGGTTTCTTACAGAAGAAAAGACTTTGTGAAGATCACATCAAACTATGTTCAAAACAGTGGAGTGAGATCTTATGGTGTGGATGTTGAGCTTGCAAAGAGGACAGGGGGGAATGAGTTAGCATCCGAAACTCTTAAAGATGAATGGGCGAGTGTCAATGAGAAGTGCCCTGGTATTAAGAACTTGGCTGGAACTGTGGGAATCATTGTGAGAGACCCTTTGAAACCCCCACCCAAGTTGAAGTTGGTAGCCCGGAAAGGGAAGCTGGAGGTGGATCAGGAAGAGGTCGGAACTGAACCGAATGGGACCGAGTTCACGATTTCTGTCAAGGATTCGCCAGAGCTGGACAATTCGACCCTGGTGATTGGAACAGTTTTGGAAGGGATGCAAGTTGCGGAAAGGATTGCTCAAGTGAAGACAGTGAAAGACAACACTACTTCTCCTTACTTCAGGGTGGCAAAGCTAATAGGCGATAAGAGAGCTGTTGTTGCAGAAAGAGGCTTCAACCGCCCTTATTCAAAAGTGGTCGTCACAAACTGTGGGTTGCTAGAGCTAGAGTAATGACATGGTTGTCCTCCCAGTTTTGCCCTTTTCTAAATTCAACTATGCCCTTTATGAATGAATGAGGTATTCTATGTCATACCAAAAATTTGAAATATTATTATCTCATAGGCTCATAAAGTTGATTCATCGTATAATTTACGAGAGACGGATTATGTTTCAAATTAATAGCCCTTCACTTTGACACTCTAACTTCAATACTATGTTCCAAAAAACAGCAAACTGCCAATAGAAGCAACCTCAAAAAATTACTTTACACTAATACAAAATCCCATAACTAGTTATATAGATAATGATATGACAGCAGAGATATCATTGTAGAAGGAACTCAATTGGGGAAGGCATGACATGAAAAACCCATCTCCAAAGGGTGTATGTATCCCATACCTTAGAAGAGGCAGCAATTTAATCCCGGAAGCTCTGTCAAGTAACGAGCCTAGCGCTT

Coding sequence (CDS)

ATGACCTCCTCCATGGCGGCTCTCTCATCAAGAACGCTCTGCCGCTCTTTGCTCCCCACTTCTAAACCTTCTCACATACTTCCCCTGTCCAATTGCGCCAACAATCTTTTCGTCCGCTCCGTCTCAGACACCAGCGGCTCCAGTATTGATTCGGACACCGAATTGGACTCACACTCAGTACCTAATCGTTCTTCTGCTTCACAATCGTCAACCCAGACGAGACCGGTCTATAATCGACCTCTCGAAAATGGCCTCGACGCTGGCATTTATAAGGTGGCTATTCTGGTGGGTCAGGTGGGGCAGAGGCCATTGCAGAAGCAGCTGAAGAGTGGGAGAACGGTGACACTGTTATCAGTTGGGACGGGTGGCATTCGTAACAATCGGAGACCCTTGGCTAGTGAGGAACCCAAAGAGTATGCAAATCGGTGCGCAGTTCAGTGGCACCGGGTTTCGATTTATCCTCTGAGACTGGGCGATGTTGCCATGAAGCACGTCGTACCTGGTTCAATGTTGTATTTGGAGGGGAATTTGGAAACCAAAATTTTCAGTGATCCAACAACTGGTATTGTTCGACGTATTAGAGAAATTGCCATTCGTCGAAATGGGCGCCTTGTATTTTTGGGCAAAGGAGGAAATGATGCTCAGCCGTCGACTCAATCAGAGTTCAAAGGTGTTGGCTATTACTAA

Protein sequence

MTSSMAALSSRTLCRSLLPTSKPSHILPLSNCANNLFVRSVSDTSGSSIDSDTELDSHSVPNRSSASQSSTQTRPVYNRPLENGLDAGIYKVAILVGQVGQRPLQKQLKSGRTVTLLSVGTGGIRNNRRPLASEEPKEYANRCAVQWHRVSIYPLRLGDVAMKHVVPGSMLYLEGNLETKIFSDPTTGIVRRIREIAIRRNGRLVFLGKGGNDAQPSTQSEFKGVGYY

Homology

[Close]

BLAST of Cp4.1LG09g11610 vs. ExPASy Swiss-Prot
Match: Q84J78 (Single-stranded DNA-binding protein, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At4g11060 PE=2 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 4.4e-20
Identity = 48/123 (39.02%), Postives = 83/123 (67.48%), Query Frame = 0


Query: 88  GIYKVAILVGQVGQRPLQKQLKSGRTVTLLSVGTGGIRNNRRPLASEEPKEYANRCAVQW 147
           G+++ AI+ G+VGQ PLQK L++GRTVT+ +VGTGG+ + R   A+ +PK        QW
Sbjct: 70  GVHR-AIICGKVGQAPLQKILRNGRTVTIFTVGTGGMFDQRLVGATNQPK------PAQW 129

Query: 148 HRVSIYPLRLGDVAMKHVVPGSMLYLEGNLETKIFSDPTTGIVRRIREIAIRRNGRLVFL 207
           HR++++   LG  A++ +   S +Y+EG++ET++++D  +  V+ I EI +RR+G++  +
Sbjct: 130 HRIAVHNEVLGSYAVQKLAKNSSVYVEGDIETRVYNDSISSEVKSIPEICVRRDGKIRMI 185

Query: 208 GKG 211
             G
Sbjct: 190 KYG 185

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BLAST of Cp4.1LG09g11610 vs. ExPASy Swiss-Prot
Match: Q8D254 (Single-stranded DNA-binding protein OS=Wigglesworthia glossinidia brevipalpis OX=36870 GN=ssb PE=3 SV=2)

HSP 1 Score: 66.2 bits (160), Expect = 5.3e-10
Identity = 45/121 (37.19%), Postives = 68/121 (56.20%), Query Frame = 0


Query: 88  GIYKVAILVGQVGQRPLQKQLKSGRTVTLLSVGTGGIRNNRRPLASEEPKEYANRCAVQW 147
           GI KV IL+G +GQ P  + + +G  +T LS+ T     N R   + E KE       +W
Sbjct: 5   GINKV-ILIGNLGQDPEVRYIPNGNAITNLSLATS---ENWRDKNTGESKE-----KTEW 64

Query: 148 HRVSIYPLRLGDVAMKHVVPGSMLYLEGNLETKIFSDPTTGIVRRIREIAIRRNGRLVFL 207
           HRV ++  +L +VA +++  GS +Y+EGNL+T+ + D   G  R I EI +  NG +  L
Sbjct: 65  HRVILFG-KLAEVAGEYLKKGSQVYIEGNLQTRKWQD-QNGQDRYITEIVVGINGCMQML 114

Query: 208 G 209
           G
Sbjct: 125 G 114

[Close]

BLAST of Cp4.1LG09g11610 vs. ExPASy Swiss-Prot
Match: Q9A894 (Single-stranded DNA-binding protein OS=Caulobacter vibrioides (strain ATCC 19089 / CB15) OX=190650 GN=ssb PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 5.9e-09
Identity = 47/133 (35.34%), Postives = 68/133 (51.13%), Query Frame = 0


Query: 87  AGIYKVAILVGQVGQRPLQKQLKSGRTVTLLSVGTGGIRNNRRPLASEEPKEYANRCAVQ 146
           AG     ILVG +G  P  + L SG  V  L + T     +R   +S E KE       +
Sbjct: 2   AGSVNKVILVGNLGADPEIRSLGSGDRVANLRIATSETWRDR---SSGERKE-----KTE 61

Query: 147 WHRVSIYPLRLGDVAMKHVVPGSMLYLEGNLETKIFSDPTTGIVRRIREIAIRR-NGRLV 206
           WHRV I+   L  VA +++  GS +Y+EG L+T+ ++D  TG  +   EI +++  G L 
Sbjct: 62  WHRVVIFNDNLVKVAEQYLRKGSTVYIEGALQTRKWTD-NTGQEKYSTEIVLQKFRGELT 121

Query: 207 FLGKGGNDAQPST 219
            LG  G DA  S+
Sbjct: 122 MLGGRGGDAGMSS 125

[Close]

BLAST of Cp4.1LG09g11610 vs. ExPASy Swiss-Prot
Match: Q92G30 (Single-stranded DNA-binding protein OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) OX=272944 GN=ssb PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 7.7e-09
Identity = 44/140 (31.43%), Postives = 70/140 (50.00%), Query Frame = 0


Query: 87  AGIYKVAILVGQVGQRPLQKQLKSGRTVTLLSVGTGGIRNNRRPLASEEPKEYANRCAVQ 146
           AG     IL+G VG+ P  +    G+ +  LS+ T     +R    + E KE       +
Sbjct: 2   AGSLNKVILIGNVGRDPEMRTTGEGKKIINLSLATTETWKDR---ITSERKE-----RTE 61

Query: 147 WHRVSIYPLRLGDVAMKHVVPGSMLYLEGNLETKIFSDPTTGIVRRIREIAIRR-NGRLV 206
           WHRV I+   L  V  ++V  GS LY+EG+L+T+ ++D  +G  +   E+ ++  N +L+
Sbjct: 62  WHRVVIFSEGLVSVVERYVTKGSKLYIEGSLQTRKWND-NSGQEKYTTEVVLQNFNSQLI 121

Query: 207 FLG--KGGNDAQPSTQSEFK 224
            L      N  Q S  SE+K
Sbjct: 122 LLDSKNSNNHNQDSGHSEYK 132

[Close]

BLAST of Cp4.1LG09g11610 vs. ExPASy Swiss-Prot
Match: Q4UJW3 (Single-stranded DNA-binding protein OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) OX=315456 GN=ssb PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 7.7e-09
Identity = 44/140 (31.43%), Postives = 71/140 (50.71%), Query Frame = 0


Query: 87  AGIYKVAILVGQVGQRPLQKQLKSGRTVTLLSVGTGGIRNNRRPLASEEPKEYANRCAVQ 146
           AG     IL+G VG+ P  +    G+ +  LS+ T     +R    + E KE       +
Sbjct: 2   AGSLNKVILIGNVGRDPEIRTTGEGKKIINLSLATTETWKDR---ITSERKE-----RTE 61

Query: 147 WHRVSIYPLRLGDVAMKHVVPGSMLYLEGNLETKIFSDPTTGIVRRIREIAIRR-NGRLV 206
           WHRV I+   L  V  ++V  GS LY+EG+L+T+ ++D  +G  +   E+ ++  N +L+
Sbjct: 62  WHRVVIFSEGLVSVVERYVTKGSKLYIEGSLQTRKWND-NSGQEKYTTEVVLQNFNSQLI 121

Query: 207 FLG--KGGNDAQPSTQSEFK 224
            L      N  Q S +SE+K
Sbjct: 122 LLDSKNSNNHTQDSGRSEYK 132

[Close]

BLAST of Cp4.1LG09g11610 vs. NCBI nr
Match: XP_023541983.1 (single-stranded DNA-binding protein, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 436 bits (1121), Expect = 7.05e-154
Identity = 227/228 (99.56%), Postives = 227/228 (99.56%), Query Frame = 0


Query: 1   MTSSMAALSSRTLCRSLLPTSKPSHILPLSNCANNLFVRSVSDTSGSSIDSDTELDSHSV 60
           MTSSMAALSSRTLCRSLLPTSKPSHILPLSNCANNLFVRSVSDTSGSSIDSDTELDSHSV
Sbjct: 1   MTSSMAALSSRTLCRSLLPTSKPSHILPLSNCANNLFVRSVSDTSGSSIDSDTELDSHSV 60

Query: 61  PNRSSASQSSTQTRPVYNRPLENGLDAGIYKVAILVGQVGQRPLQKQLKSGRTVTLLSVG 120
           PNRSSASQSSTQTRPVYNRPLENGLDAGIYK AILVGQVGQRPLQKQLKSGRTVTLLSVG
Sbjct: 61  PNRSSASQSSTQTRPVYNRPLENGLDAGIYK-AILVGQVGQRPLQKQLKSGRTVTLLSVG 120

Query: 121 TGGIRNNRRPLASEEPKEYANRCAVQWHRVSIYPLRLGDVAMKHVVPGSMLYLEGNLETK 180
           TGGIRNNRRPLASEEPKEYANRCAVQWHRVSIYPLRLGDVAMKHVVPGSMLYLEGNLETK
Sbjct: 121 TGGIRNNRRPLASEEPKEYANRCAVQWHRVSIYPLRLGDVAMKHVVPGSMLYLEGNLETK 180

Query: 181 IFSDPTTGIVRRIREIAIRRNGRLVFLGKGGNDAQPSTQSEFKGVGYY 228
           IFSDPTTGIVRRIREIAIRRNGRLVFLGKGGNDAQPSTQSEFKGVGYY
Sbjct: 181 IFSDPTTGIVRRIREIAIRRNGRLVFLGKGGNDAQPSTQSEFKGVGYY 227

[Close]

BLAST of Cp4.1LG09g11610 vs. NCBI nr
Match: KAG6572922.1 (Single-stranded DNA-binding protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 379 bits (973), Expect = 1.72e-131
Identity = 202/215 (93.95%), Postives = 204/215 (94.88%), Query Frame = 0


Query: 1   MTSSMAALSSRTLCRSLLPTSKPSHILPLSNCANNLFVRSVSDTSGSSIDSDTELDSHSV 60
           MTSS AALS RTLCRSLLPTSKPS ILPLS CANNLF RSVSDTSGSSIDSDTELDSH V
Sbjct: 1   MTSSNAALS-RTLCRSLLPTSKPSRILPLSYCANNLFFRSVSDTSGSSIDSDTELDSHPV 60

Query: 61  PNRSSASQSSTQTRPVYNRPLENGLDAGIYKVAILVGQVGQRPLQKQLKSGRTVTLLSVG 120
           PNRSSAS+SSTQTRPVYNRPLENGLDAGIYK AILVGQVGQRPLQKQLKSGR VTLLSVG
Sbjct: 61  PNRSSASRSSTQTRPVYNRPLENGLDAGIYK-AILVGQVGQRPLQKQLKSGRRVTLLSVG 120

Query: 121 TGGIRNNRRPLASEEPKEYANRCAVQWHRVSIYPLRLGDVAMKHVVPGSMLYLEGNLETK 180
           TGGIRNNRRPLA+EEPKEYANRCAVQWHRVSIYPLRLGDVAMKHVVPGSMLYLEGNLETK
Sbjct: 121 TGGIRNNRRPLANEEPKEYANRCAVQWHRVSIYPLRLGDVAMKHVVPGSMLYLEGNLETK 180

Query: 181 IFSDPTTGIVRRIREIAIRRNGRLVFLGKGGNDAQ 215
           IFSDPTTGIV RIREI IRRNGRLVFLGKGGND Q
Sbjct: 181 IFSDPTTGIVGRIREIGIRRNGRLVFLGKGGNDVQ 213

[Close]

BLAST of Cp4.1LG09g11610 vs. NCBI nr
Match: KAG7012108.1 (Peptidyl-prolyl cis-trans isomerase CYP26-2, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 360 bits (925), Expect = 1.28e-118
Identity = 192/203 (94.58%), Postives = 194/203 (95.57%), Query Frame = 0


Query: 1   MTSSMAALSSRTLCRSLLPTSKPSHILPLSNCANNLFVRSVSDTSGSSIDSDTELDSHSV 60
           MTSS AALS RTLCRSLLPTSKPSHILPLSNCANNLF RSVSDTSGSSIDSDTELDSH V
Sbjct: 1   MTSSNAALS-RTLCRSLLPTSKPSHILPLSNCANNLFFRSVSDTSGSSIDSDTELDSHPV 60

Query: 61  PNRSSASQSSTQTRPVYNRPLENGLDAGIYKVAILVGQVGQRPLQKQLKSGRTVTLLSVG 120
           PNRSSASQSSTQTRPVYNRPLENGLDA IYK AILVGQVGQRPLQKQLKSGR VTLLSVG
Sbjct: 61  PNRSSASQSSTQTRPVYNRPLENGLDADIYK-AILVGQVGQRPLQKQLKSGRRVTLLSVG 120

Query: 121 TGGIRNNRRPLASEEPKEYANRCAVQWHRVSIYPLRLGDVAMKHVVPGSMLYLEGNLETK 180
           TGGIRNNRRPLA+EEPKEYANRCAVQWHRVSIYPLRLGDVAMKHVVPGSMLYLEGNLETK
Sbjct: 121 TGGIRNNRRPLANEEPKEYANRCAVQWHRVSIYPLRLGDVAMKHVVPGSMLYLEGNLETK 180

Query: 181 IFSDPTTGIVRRIREIAIRRNGR 203
           IFSDPTTGIV RIREI IRRNG+
Sbjct: 181 IFSDPTTGIVGRIREIGIRRNGK 201

[Close]

BLAST of Cp4.1LG09g11610 vs. NCBI nr
Match: XP_022923669.1 (single-stranded DNA-binding protein, mitochondrial-like [Cucurbita moschata] >XP_022923670.1 single-stranded DNA-binding protein, mitochondrial-like [Cucurbita moschata] >XP_022923671.1 single-stranded DNA-binding protein, mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 329 bits (844), Expect = 1.16e-111
Identity = 180/228 (78.95%), Postives = 192/228 (84.21%), Query Frame = 0


Query: 4   SMAALSSRTLCRSLLPTSKPSH---ILPLSNCANNLFVRSVSDTSGSSIDSDTELDSHSV 63
           SMA LS R L RSLL  SK SH   ILP+   + NL  RS+SD   SSI SD  LDSHSV
Sbjct: 3   SMAVLS-RRLFRSLLSNSKASHHHDILPVICSSKNLSFRSISDIGESSIGSDMNLDSHSV 62

Query: 64  PNRSSASQSSTQTRPVYNRPLENGLDAGIYKVAILVGQVGQRPLQKQLKSGRTVTLLSVG 123
            NR S S SS+QTR +YNRPLENGLDAGIYK AILVGQVGQ PLQKQLKSGRTVTLLSVG
Sbjct: 63  SNRPSLSPSSSQTRTIYNRPLENGLDAGIYK-AILVGQVGQSPLQKQLKSGRTVTLLSVG 122

Query: 124 TGGIRNNRRPLASEEPKEYANRCAVQWHRVSIYPLRLGDVAMKHVVPGSMLYLEGNLETK 183
           TGGIRNNRRPLA+EEP+EYANRCAVQWHRVSIYP RLGDV MKHVVPGS+LYLEGNLETK
Sbjct: 123 TGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPQRLGDVVMKHVVPGSILYLEGNLETK 182

Query: 184 IFSDPTTGIVRRIREIAIRRNGRLVFLGKGGNDAQPSTQSEFKGVGYY 228
           IF+D TTG+VRRIRE+AIRR+GRLVFLGKG  D Q STQSEFKGVGYY
Sbjct: 183 IFTDSTTGLVRRIREVAIRRSGRLVFLGKGEGDVQQSTQSEFKGVGYY 228

[Close]

BLAST of Cp4.1LG09g11610 vs. NCBI nr
Match: XP_022137580.1 (single-stranded DNA-binding protein, mitochondrial [Momordica charantia])

HSP 1 Score: 328 bits (842), Expect = 2.70e-111
Identity = 177/232 (76.29%), Postives = 194/232 (83.62%), Query Frame = 0


Query: 4   SMAALSSRTLCRSLLPTSKPSH---ILPLSNCANNLFVRSVSDTSGSSIDSDTELDSHSV 63
           SMAALS R LCRSLL  S+ SH    L ++ C NN   RS S+   SSIDSD + DSHSV
Sbjct: 3   SMAALS-RKLCRSLLSNSRASHHPEFLSMTYCTNNSSFRSGSEIGDSSIDSDMDSDSHSV 62

Query: 64  PNRSS----ASQSSTQTRPVYNRPLENGLDAGIYKVAILVGQVGQRPLQKQLKSGRTVTL 123
            NR S    +SQSSTQTR +YNRPLENGLDAGIYK AILVGQ GQ PLQKQLKSGRTVTL
Sbjct: 63  TNRPSVSPSSSQSSTQTRMIYNRPLENGLDAGIYK-AILVGQAGQSPLQKQLKSGRTVTL 122

Query: 124 LSVGTGGIRNNRRPLASEEPKEYANRCAVQWHRVSIYPLRLGDVAMKHVVPGSMLYLEGN 183
           LSVGTGGIRNNRRPLA+EEP+EYANRCAVQWHRVS+YP RLG++ MKHVVPGS+LYLEGN
Sbjct: 123 LSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSVYPQRLGEIVMKHVVPGSILYLEGN 182

Query: 184 LETKIFSDPTTGIVRRIREIAIRRNGRLVFLGKGGNDAQPSTQSEFKGVGYY 228
           LETKIF+DP TG+VRRIRE+AIRRNGRLVFLG GG + Q STQSEFKGVGYY
Sbjct: 183 LETKIFTDPITGLVRRIREVAIRRNGRLVFLGDGGGNVQQSTQSEFKGVGYY 232

[Close]

BLAST of Cp4.1LG09g11610 vs. ExPASy TrEMBL
Match: A0A6J1E721 (single-stranded DNA-binding protein, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111431312 PE=4 SV=1)

HSP 1 Score: 329 bits (844), Expect = 5.64e-112
Identity = 180/228 (78.95%), Postives = 192/228 (84.21%), Query Frame = 0


Query: 4   SMAALSSRTLCRSLLPTSKPSH---ILPLSNCANNLFVRSVSDTSGSSIDSDTELDSHSV 63
           SMA LS R L RSLL  SK SH   ILP+   + NL  RS+SD   SSI SD  LDSHSV
Sbjct: 3   SMAVLS-RRLFRSLLSNSKASHHHDILPVICSSKNLSFRSISDIGESSIGSDMNLDSHSV 62

Query: 64  PNRSSASQSSTQTRPVYNRPLENGLDAGIYKVAILVGQVGQRPLQKQLKSGRTVTLLSVG 123
            NR S S SS+QTR +YNRPLENGLDAGIYK AILVGQVGQ PLQKQLKSGRTVTLLSVG
Sbjct: 63  SNRPSLSPSSSQTRTIYNRPLENGLDAGIYK-AILVGQVGQSPLQKQLKSGRTVTLLSVG 122

Query: 124 TGGIRNNRRPLASEEPKEYANRCAVQWHRVSIYPLRLGDVAMKHVVPGSMLYLEGNLETK 183
           TGGIRNNRRPLA+EEP+EYANRCAVQWHRVSIYP RLGDV MKHVVPGS+LYLEGNLETK
Sbjct: 123 TGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPQRLGDVVMKHVVPGSILYLEGNLETK 182

Query: 184 IFSDPTTGIVRRIREIAIRRNGRLVFLGKGGNDAQPSTQSEFKGVGYY 228
           IF+D TTG+VRRIRE+AIRR+GRLVFLGKG  D Q STQSEFKGVGYY
Sbjct: 183 IFTDSTTGLVRRIREVAIRRSGRLVFLGKGEGDVQQSTQSEFKGVGYY 228

[Close]

BLAST of Cp4.1LG09g11610 vs. ExPASy TrEMBL
Match: A0A6J1C717 (single-stranded DNA-binding protein, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111008995 PE=4 SV=1)

HSP 1 Score: 328 bits (842), Expect = 1.31e-111
Identity = 177/232 (76.29%), Postives = 194/232 (83.62%), Query Frame = 0


Query: 4   SMAALSSRTLCRSLLPTSKPSH---ILPLSNCANNLFVRSVSDTSGSSIDSDTELDSHSV 63
           SMAALS R LCRSLL  S+ SH    L ++ C NN   RS S+   SSIDSD + DSHSV
Sbjct: 3   SMAALS-RKLCRSLLSNSRASHHPEFLSMTYCTNNSSFRSGSEIGDSSIDSDMDSDSHSV 62

Query: 64  PNRSS----ASQSSTQTRPVYNRPLENGLDAGIYKVAILVGQVGQRPLQKQLKSGRTVTL 123
            NR S    +SQSSTQTR +YNRPLENGLDAGIYK AILVGQ GQ PLQKQLKSGRTVTL
Sbjct: 63  TNRPSVSPSSSQSSTQTRMIYNRPLENGLDAGIYK-AILVGQAGQSPLQKQLKSGRTVTL 122

Query: 124 LSVGTGGIRNNRRPLASEEPKEYANRCAVQWHRVSIYPLRLGDVAMKHVVPGSMLYLEGN 183
           LSVGTGGIRNNRRPLA+EEP+EYANRCAVQWHRVS+YP RLG++ MKHVVPGS+LYLEGN
Sbjct: 123 LSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSVYPQRLGEIVMKHVVPGSILYLEGN 182

Query: 184 LETKIFSDPTTGIVRRIREIAIRRNGRLVFLGKGGNDAQPSTQSEFKGVGYY 228
           LETKIF+DP TG+VRRIRE+AIRRNGRLVFLG GG + Q STQSEFKGVGYY
Sbjct: 183 LETKIFTDPITGLVRRIREVAIRRNGRLVFLGDGGGNVQQSTQSEFKGVGYY 232

[Close]

BLAST of Cp4.1LG09g11610 vs. ExPASy TrEMBL
Match: A0A6J1KGM8 (single-stranded DNA-binding protein, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111495086 PE=4 SV=1)

HSP 1 Score: 324 bits (831), Expect = 6.17e-110
Identity = 180/232 (77.59%), Postives = 193/232 (83.19%), Query Frame = 0


Query: 4   SMAALSSRTLCRSLLPTSKPSH---ILPLSNCANNLFVRSVSDTSGSSIDSDTELDSHSV 63
           SMA LS R L RS L  SK SH   ILP+   + NL  RSVSD   SSIDSD +L SHSV
Sbjct: 3   SMAVLS-RRLFRSFLSNSKASHHHDILPVIYSSKNLSFRSVSDIGESSIDSDMDLGSHSV 62

Query: 64  PNRSS----ASQSSTQTRPVYNRPLENGLDAGIYKVAILVGQVGQRPLQKQLKSGRTVTL 123
            NR S    +SQSS+QTR +YNRPLENGLDAGIYK AILVGQVGQ PLQKQLKSGRTVTL
Sbjct: 63  SNRPSLSPSSSQSSSQTRTIYNRPLENGLDAGIYK-AILVGQVGQSPLQKQLKSGRTVTL 122

Query: 124 LSVGTGGIRNNRRPLASEEPKEYANRCAVQWHRVSIYPLRLGDVAMKHVVPGSMLYLEGN 183
           LSVGTGGIRNNRRPLA+EEP+EYANRCAVQWHRVSIYP RLGDV MKHVVPGS+LYLEGN
Sbjct: 123 LSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPQRLGDVVMKHVVPGSILYLEGN 182

Query: 184 LETKIFSDPTTGIVRRIREIAIRRNGRLVFLGKGGNDAQPSTQSEFKGVGYY 228
           LETKIF+D TTG+VRRIRE+AIRR+GRLVFLGKG  D Q STQ EFKGVGYY
Sbjct: 183 LETKIFTDSTTGLVRRIREVAIRRSGRLVFLGKGEGDVQQSTQLEFKGVGYY 232

[Close]

BLAST of Cp4.1LG09g11610 vs. ExPASy TrEMBL
Match: A0A0A0LTL6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042140 PE=4 SV=1)

HSP 1 Score: 324 bits (831), Expect = 6.61e-110
Identity = 179/234 (76.50%), Postives = 197/234 (84.19%), Query Frame = 0


Query: 4   SMAALSSRTLCRSLLPTSKPSH---ILPLSNCANNLFVRSVSDTSGSSIDSD--TELDSH 63
           SM ALS R LCRSLL  SK SH   ILP++ C NNL  RSVSD + S I+SD  TELDS+
Sbjct: 3   SMVALS-RRLCRSLLSNSKASHHYDILPVTYCTNNLSFRSVSDITESGIESDLYTELDSN 62

Query: 64  SVPNRSS----ASQSSTQTRPVYNRPLENGLDAGIYKVAILVGQVGQRPLQKQLKSGRTV 123
           SV N+ S    +SQS TQ RPVYNRPLENGLDAGIYK AILVG+VGQ PLQKQLKSGRTV
Sbjct: 63  SVTNQPSLSPSSSQSPTQPRPVYNRPLENGLDAGIYK-AILVGKVGQSPLQKQLKSGRTV 122

Query: 124 TLLSVGTGGIRNNRRPLASEEPKEYANRCAVQWHRVSIYPLRLGDVAMKHVVPGSMLYLE 183
           TLLSVGTGGIRNNRRPLA+EEP+EYANRCAVQWHRVSIYP RLG++ MKHVVPGS+LYLE
Sbjct: 123 TLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPTRLGNIVMKHVVPGSILYLE 182

Query: 184 GNLETKIFSDPTTGIVRRIREIAIRRNGRLVFLGKGGNDAQPSTQSEFKGVGYY 228
           GNLETKIF+D  TG+VRRIRE+AIR NGRLVFLGKG  +AQ ST SEF+GVGYY
Sbjct: 183 GNLETKIFTDQVTGLVRRIREVAIRGNGRLVFLGKGEGNAQESTPSEFRGVGYY 234

[Close]

BLAST of Cp4.1LG09g11610 vs. ExPASy TrEMBL
Match: A0A1S3C3D2 (single-stranded DNA-binding protein, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103495996 PE=4 SV=1)

HSP 1 Score: 308 bits (789), Expect = 1.62e-103
Identity = 171/237 (72.15%), Postives = 196/237 (82.70%), Query Frame = 0


Query: 1   MTSSMAALSSRTLCRSLLPTSKPSH---ILPLSNCANNLFVRSVSDTSGSSIDSD--TEL 60
           MTS++A   SR LCRSLL  SK SH   ILP++ C NNL  RSVSD + S I+SD  +EL
Sbjct: 1   MTSTVAL--SRRLCRSLLSNSKASHHHDILPVTYCTNNLSFRSVSDITESGIESDLYSEL 60

Query: 61  DSHSVPNRSS----ASQSSTQTRPVYNRPLENGLDAGIYKVAILVGQVGQRPLQKQLKSG 120
           DS+SV N+ S    +SQS TQ+R VY+RPLENGLDAGI+K AILVG+VGQ PLQKQLKSG
Sbjct: 61  DSNSVTNQPSFSPSSSQSPTQSRKVYDRPLENGLDAGIFK-AILVGKVGQSPLQKQLKSG 120

Query: 121 RTVTLLSVGTGGIRNNRRPLASEEPKEYANRCAVQWHRVSIYPLRLGDVAMKHVVPGSML 180
           RTVTLLSVGTGGIRNNRRPLA+EEP+EYANRCAVQWHRVSIYP RLG++ MKH VPGS++
Sbjct: 121 RTVTLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPQRLGNIVMKHAVPGSIM 180

Query: 181 YLEGNLETKIFSDPTTGIVRRIREIAIRRNGRLVFLGKGGNDAQPSTQSEFKGVGYY 228
           YLEGNLETKIF+D  TG+VRRIRE+AIR NGRLVFLGK   +AQ ST SE +GVGYY
Sbjct: 181 YLEGNLETKIFTDQVTGLVRRIREVAIRGNGRLVFLGKEEGNAQESTSSELRGVGYY 234

[Close]

BLAST of Cp4.1LG09g11610 vs. TAIR 10
Match: AT3G18580.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 245.7 bits (626), Expect = 3.5e-65
Identity = 142/229 (62.01%), Postives = 172/229 (75.11%), Query Frame = 0


Query: 1   MTSSMAALSSRTLCRSLLPTSKPSHILPLSNCANNLFVRSVSDTSGSSIDSDTELDSHSV 60
           M +SMA L SR L RSLL   + S    +S C NN+       TS    D D EL+S   
Sbjct: 1   MANSMATL-SRRLYRSLLSNPRISQ-ASMSFCTNNI-------TSPEDSDFD-ELESPIE 60

Query: 61  PNRSS-ASQSSTQTRPVYNRPLENGLDAGIYKVAILVGQVGQRPLQKQLKSGRTVTLLSV 120
           P  S   S+ S + R +  RPLENGLD+GI+K AILVGQVGQ PLQK+LKSGRTVTL SV
Sbjct: 61  PKASDPVSRFSGEERVMEERPLENGLDSGIFK-AILVGQVGQLPLQKKLKSGRTVTLFSV 120

Query: 121 GTGGIRNNRRPLASEEPKEYANRCAVQWHRVSIYPLRLGDVAMKHVVPGSMLYLEGNLET 180
           GTGGIRNNRRPL +E+P+EYA+R AVQWHRVS+YP RL D+ +K+V PG+++YLEGNLET
Sbjct: 121 GTGGIRNNRRPLINEDPREYASRSAVQWHRVSVYPERLADLVLKNVEPGTVIYLEGNLET 180

Query: 181 KIFSDPTTGIVRRIREIAIRRNGRLVFLGKGGNDAQPSTQSEFKGVGYY 229
           KIF+DP TG+VRRIRE+AIRRNGR+VFLGK G+  QPS+ +E +GVGYY
Sbjct: 181 KIFTDPVTGLVRRIREVAIRRNGRVVFLGKAGDMQQPSS-AELRGVGYY 217

[Close]

BLAST of Cp4.1LG09g11610 vs. TAIR 10
Match: AT4G11060.1 (mitochondrially targeted single-stranded DNA binding protein )

HSP 1 Score: 99.8 bits (247), Expect = 3.1e-21
Identity = 48/123 (39.02%), Postives = 83/123 (67.48%), Query Frame = 0


Query: 88  GIYKVAILVGQVGQRPLQKQLKSGRTVTLLSVGTGGIRNNRRPLASEEPKEYANRCAVQW 147
           G+++ AI+ G+VGQ PLQK L++GRTVT+ +VGTGG+ + R   A+ +PK        QW
Sbjct: 70  GVHR-AIICGKVGQAPLQKILRNGRTVTIFTVGTGGMFDQRLVGATNQPK------PAQW 129

Query: 148 HRVSIYPLRLGDVAMKHVVPGSMLYLEGNLETKIFSDPTTGIVRRIREIAIRRNGRLVFL 207
           HR++++   LG  A++ +   S +Y+EG++ET++++D  +  V+ I EI +RR+G++  +
Sbjct: 130 HRIAVHNEVLGSYAVQKLAKNSSVYVEGDIETRVYNDSISSEVKSIPEICVRRDGKIRMI 185

Query: 208 GKG 211
             G
Sbjct: 190 KYG 185

The following BLAST results are available for this feature:

BLAST of Cp4.1LG09g11610 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84J78	4.4e-20	39.02	Single-stranded DNA-binding protein, mitochondrial OS=Arabidopsis thaliana OX=37...	[more]
Q8D254	5.3e-10	37.19	Single-stranded DNA-binding protein OS=Wigglesworthia glossinidia brevipalpis OX...	[more]
Q9A894	5.9e-09	35.34	Single-stranded DNA-binding protein OS=Caulobacter vibrioides (strain ATCC 19089...	[more]
Q92G30	7.7e-09	31.43	Single-stranded DNA-binding protein OS=Rickettsia conorii (strain ATCC VR-613 / ...	[more]
Q4UJW3	7.7e-09	31.43	Single-stranded DNA-binding protein OS=Rickettsia felis (strain ATCC VR-1525 / U...	[more]

BLAST of Cp4.1LG09g11610 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023541983.1	7.05e-154	99.56	single-stranded DNA-binding protein, mitochondrial-like [Cucurbita pepo subsp. p...	[more]
KAG6572922.1	1.72e-131	93.95	Single-stranded DNA-binding protein, mitochondrial, partial [Cucurbita argyrospe...	[more]
KAG7012108.1	1.28e-118	94.58	Peptidyl-prolyl cis-trans isomerase CYP26-2, chloroplastic [Cucurbita argyrosper...	[more]
XP_022923669.1	1.16e-111	78.95	single-stranded DNA-binding protein, mitochondrial-like [Cucurbita moschata] >XP...	[more]
XP_022137580.1	2.70e-111	76.29	single-stranded DNA-binding protein, mitochondrial [Momordica charantia]	[more]

BLAST of Cp4.1LG09g11610 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E721	5.64e-112	78.95	single-stranded DNA-binding protein, mitochondrial-like OS=Cucurbita moschata OX...	[more]
A0A6J1C717	1.31e-111	76.29	single-stranded DNA-binding protein, mitochondrial OS=Momordica charantia OX=367...	[more]
A0A6J1KGM8	6.17e-110	77.59	single-stranded DNA-binding protein, mitochondrial OS=Cucurbita maxima OX=3661 G...	[more]
A0A0A0LTL6	6.61e-110	76.50	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042140 PE=4 SV=1	[more]
A0A1S3C3D2	1.62e-103	72.15	single-stranded DNA-binding protein, mitochondrial OS=Cucumis melo OX=3656 GN=LO...	[more]

BLAST of Cp4.1LG09g11610 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G18580.1	3.5e-65	62.01	Nucleic acid-binding, OB-fold-like protein	[more]
AT4G11060.1	3.1e-21	39.02	mitochondrially targeted single-stranded DNA binding protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.40.50.140		coord: 90..225 e-value: 1.6E-15 score: 59.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 47..79
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 47..78
None	No IPR available	PANTHER	PTHR10302:SF16	NUCLEIC ACID-BINDING, OB-FOLD-LIKE PROTEIN	coord: 1..228
IPR000424	Primosome PriB/single-strand DNA-binding	PFAM	PF00436	SSB	coord: 93..200 e-value: 8.5E-17 score: 61.1
IPR000424	Primosome PriB/single-strand DNA-binding	PROSITE	PS50935	SSB	coord: 89..205 score: 12.27573
IPR000424	Primosome PriB/single-strand DNA-binding	CDD	cd04496	SSB_OBF	coord: 94..185 e-value: 6.59714E-13 score: 60.7038
IPR011344	Single-stranded DNA-binding protein	PANTHER	PTHR10302	SINGLE-STRANDED DNA-BINDING PROTEIN	coord: 1..228
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 92..202

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG09g11610.1	Cp4.1LG09g11610.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006264	mitochondrial DNA replication
biological_process	GO:0051096	positive regulation of helicase activity
biological_process	GO:0006260	DNA replication
cellular_component	GO:0042645	mitochondrial nucleoid
molecular_function	GO:0003697	single-stranded DNA binding