Cp4.1LG09g10560 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG09g10560
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Dynein light chain 1, cytoplasmic
Location	Cp4.1LG09: 9208774 .. 9209978 (-)
RNA-Seq Expression	Cp4.1LG09g10560
Synteny	Cp4.1LG09g10560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGGGGAGGTGAAGCTTATCAGAAGGAATGGCATCAATGAATGGGAGCTGCTTAGGGACAAAATCTGGGATTGAAAACGTGATTAGAACCTGATTAGAACATGATTAGAGGAATTAATTAAGCTAAGCTATTCAAATTCAACAAAGCTGTGTTGAATTCGAGGCAAGGGTTAGGTGTGATCAGTCAAACGCATCACGCAGTGGTATGAACACAGCACACACAATTTCACTATTCATTTCCTCATCCAAAAATGGCTTCCCATCTCTCTAAACCCCAAACATTCCCACCCTTTTCGTTTTTCATCTCCATTTCTCTCACAGATCTCCCATGGCGAAACCCTCCAGCCATCTCCCCAGCTTAGCCCCTCCTGATCCTGATTCAGTGGCTAATCCCCCCACATGCCCGAAGCTTGAATCTGCCATGGCTGCCGCTGCGGCTCCTAAGAGTGCAAACCCATCTCCCCTTATGGCTGTTTCTTCTATGATCAAATCAAAACCCCACCTCCAGAAATTTGCTAATGAAGAGAAGGAATTGAAAGGGCTTCAAAAGGGGCATCGCCCTGACAGTATGAGACCAACAGTGTCCTTACTTCGAAAGGGTGGAAGAACAAAGTCCTTTGCAGCTTCCCAAGTTGAATTGGCTGATATCTTTGCAAAGAACGGCATGAAAGTGGTATCAGTTGACATGCCACCGGCTATGCAGATTCATGCAGTGGATTATGCAAGAAAAGCTCATGACAGTATGGAGAAATTCACTTCCAAGGCTCTTGCTCTGTCTCTCAAGAGGGTAATTAGCTTAAGGTTCATGTGCAATGTTCAAGTTCTTGAATGATCAGCCAATAACTTTTATGGGTTTGTTTGTAATTCTTTCAGGAGTTTGATGGGGCCTATGGCCCGGTCTGGCACTGCATCGTGGGGACAAGTTTTGGGTCCTTTGTGACTCATTCAGTTGGTGGGTTCTTGTATCTAGCAATGGACCAAAAGCTGTATGTTCTATTGTTCAAAACCTCTGTACAAAGAGCTGATTGAAGTAGATGGCCAAGGTAAAAGAGACTGTTCATCCTAATACTTGTACATTTGTTCTGATAAGAAACACAGTAGCCATACAGTATATTCCTCCTATAATATGTTTAGGGATGTCTTATGAGCTGTTGATAGAGCAATTTTCATAGCAATTATTGAGGTTTAGTGATGGAATAACCCTTT

mRNA sequence

CAGGGGAGGTGAAGCTTATCAGAAGGAATGGCATCAATGAATGGGAGCTGCTTAGGGACAAAATCTGGGATTGAAAACGTGATTAGAACCTGATTAGAACATGATTAGAGGAATTAATTAAGCTAAGCTATTCAAATTCAACAAAGCTGTGTTGAATTCGAGGCAAGGGTTAGGTGTGATCAGTCAAACGCATCACGCAGTGGTATGAACACAGCACACACAATTTCACTATTCATTTCCTCATCCAAAAATGGCTTCCCATCTCTCTAAACCCCAAACATTCCCACCCTTTTCGTTTTTCATCTCCATTTCTCTCACAGATCTCCCATGGCGAAACCCTCCAGCCATCTCCCCAGCTTAGCCCCTCCTGATCCTGATTCAGTGGCTAATCCCCCCACATGCCCGAAGCTTGAATCTGCCATGGCTGCCGCTGCGGCTCCTAAGAGTGCAAACCCATCTCCCCTTATGGCTGTTTCTTCTATGATCAAATCAAAACCCCACCTCCAGAAATTTGCTAATGAAGAGAAGGAATTGAAAGGGCTTCAAAAGGGGCATCGCCCTGACAGTATGAGACCAACAGTGTCCTTACTTCGAAAGGGTGGAAGAACAAAGTCCTTTGCAGCTTCCCAAGTTGAATTGGCTGATATCTTTGCAAAGAACGGCATGAAAGTGGTATCAGTTGACATGCCACCGGCTATGCAGATTCATGCAGTGGATTATGCAAGAAAAGCTCATGACAGTATGGAGAAATTCACTTCCAAGGCTCTTGCTCTGTCTCTCAAGAGGGAGTTTGATGGGGCCTATGGCCCGGTCTGGCACTGCATCGTGGGGACAAGTTTTGGGTCCTTTGTGACTCATTCAGTTGGTGGGTTCTTGTATCTAGCAATGGACCAAAAGCTGTATGTTCTATTGTTCAAAACCTCTGTACAAAGAGCTGATTGAAGTAGATGGCCAAGGTAAAAGAGACTGTTCATCCTAATACTTGTACATTTGTTCTGATAAGAAACACAGTAGCCATACAGTATATTCCTCCTATAATATGTTTAGGGATGTCTTATGAGCTGTTGATAGAGCAATTTTCATAGCAATTATTGAGGTTTAGTGATGGAATAACCCTTT

Coding sequence (CDS)

ATGGCGAAACCCTCCAGCCATCTCCCCAGCTTAGCCCCTCCTGATCCTGATTCAGTGGCTAATCCCCCCACATGCCCGAAGCTTGAATCTGCCATGGCTGCCGCTGCGGCTCCTAAGAGTGCAAACCCATCTCCCCTTATGGCTGTTTCTTCTATGATCAAATCAAAACCCCACCTCCAGAAATTTGCTAATGAAGAGAAGGAATTGAAAGGGCTTCAAAAGGGGCATCGCCCTGACAGTATGAGACCAACAGTGTCCTTACTTCGAAAGGGTGGAAGAACAAAGTCCTTTGCAGCTTCCCAAGTTGAATTGGCTGATATCTTTGCAAAGAACGGCATGAAAGTGGTATCAGTTGACATGCCACCGGCTATGCAGATTCATGCAGTGGATTATGCAAGAAAAGCTCATGACAGTATGGAGAAATTCACTTCCAAGGCTCTTGCTCTGTCTCTCAAGAGGGAGTTTGATGGGGCCTATGGCCCGGTCTGGCACTGCATCGTGGGGACAAGTTTTGGGTCCTTTGTGACTCATTCAGTTGGTGGGTTCTTGTATCTAGCAATGGACCAAAAGCTGTATGTTCTATTGTTCAAAACCTCTGTACAAAGAGCTGATTGA

Protein sequence

MAKPSSHLPSLAPPDPDSVANPPTCPKLESAMAAAAAPKSANPSPLMAVSSMIKSKPHLQKFANEEKELKGLQKGHRPDSMRPTVSLLRKGGRTKSFAASQVELADIFAKNGMKVVSVDMPPAMQIHAVDYARKAHDSMEKFTSKALALSLKREFDGAYGPVWHCIVGTSFGSFVTHSVGGFLYLAMDQKLYVLLFKTSVQRAD

Homology

[Close]

BLAST of Cp4.1LG09g10560 vs. ExPASy Swiss-Prot
Match: O02414 (Dynein light chain LC6, flagellar outer arm OS=Heliocidaris crassispina OX=1043166 PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.3e-12
Identity = 41/85 (48.24%), Postives = 54/85 (63.53%), Query Frame = 0


Query: 115 VVSVDMPPAMQIHAVDYARKAHDSMEKFT-SKALALSLKREFDGAYGPVWHCIVGTSFGS 174
           + + DMP  MQ  AVD A +A   +EKF   K +A  +K+EFD  Y P WHCIVG +FGS
Sbjct: 8   IKNADMPEDMQQDAVDCATQA---LEKFNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGS 67

Query: 175 FVTHSVGGFLYLAMDQKLYVLLFKT 199
           +VTH    F+Y  + Q + VLLFK+
Sbjct: 68  YVTHETKHFIYFYLGQ-VAVLLFKS 88

[Close]

BLAST of Cp4.1LG09g10560 vs. ExPASy Swiss-Prot
Match: Q3MHR3 (Dynein light chain 2, cytoplasmic OS=Bos taurus OX=9913 GN=DYNLL2 PE=3 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.5e-11
Identity = 39/85 (45.88%), Postives = 53/85 (62.35%), Query Frame = 0


Query: 115 VVSVDMPPAMQIHAVDYARKAHDSMEKFT-SKALALSLKREFDGAYGPVWHCIVGTSFGS 174
           + + DM   MQ  AVD A +A   MEK+   K +A  +K+EFD  Y P WHCIVG +FGS
Sbjct: 8   IKNADMSEDMQQDAVDCATQA---MEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGS 67

Query: 175 FVTHSVGGFLYLAMDQKLYVLLFKT 199
           +VTH    F+Y  + Q + +LLFK+
Sbjct: 68  YVTHETKHFIYFYLGQ-VAILLFKS 88

[Close]

BLAST of Cp4.1LG09g10560 vs. ExPASy Swiss-Prot
Match: Q96FJ2 (Dynein light chain 2, cytoplasmic OS=Homo sapiens OX=9606 GN=DYNLL2 PE=1 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.5e-11
Identity = 39/85 (45.88%), Postives = 53/85 (62.35%), Query Frame = 0


Query: 115 VVSVDMPPAMQIHAVDYARKAHDSMEKFT-SKALALSLKREFDGAYGPVWHCIVGTSFGS 174
           + + DM   MQ  AVD A +A   MEK+   K +A  +K+EFD  Y P WHCIVG +FGS
Sbjct: 8   IKNADMSEDMQQDAVDCATQA---MEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGS 67

Query: 175 FVTHSVGGFLYLAMDQKLYVLLFKT 199
           +VTH    F+Y  + Q + +LLFK+
Sbjct: 68  YVTHETKHFIYFYLGQ-VAILLFKS 88

[Close]

BLAST of Cp4.1LG09g10560 vs. ExPASy Swiss-Prot
Match: Q9D0M5 (Dynein light chain 2, cytoplasmic OS=Mus musculus OX=10090 GN=Dynll2 PE=1 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.5e-11
Identity = 39/85 (45.88%), Postives = 53/85 (62.35%), Query Frame = 0


Query: 115 VVSVDMPPAMQIHAVDYARKAHDSMEKFT-SKALALSLKREFDGAYGPVWHCIVGTSFGS 174
           + + DM   MQ  AVD A +A   MEK+   K +A  +K+EFD  Y P WHCIVG +FGS
Sbjct: 8   IKNADMSEDMQQDAVDCATQA---MEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGS 67

Query: 175 FVTHSVGGFLYLAMDQKLYVLLFKT 199
           +VTH    F+Y  + Q + +LLFK+
Sbjct: 68  YVTHETKHFIYFYLGQ-VAILLFKS 88

[Close]

BLAST of Cp4.1LG09g10560 vs. ExPASy Swiss-Prot
Match: Q78P75 (Dynein light chain 2, cytoplasmic OS=Rattus norvegicus OX=10116 GN=Dynll2 PE=1 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.5e-11
Identity = 39/85 (45.88%), Postives = 53/85 (62.35%), Query Frame = 0


Query: 115 VVSVDMPPAMQIHAVDYARKAHDSMEKFT-SKALALSLKREFDGAYGPVWHCIVGTSFGS 174
           + + DM   MQ  AVD A +A   MEK+   K +A  +K+EFD  Y P WHCIVG +FGS
Sbjct: 8   IKNADMSEDMQQDAVDCATQA---MEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGS 67

Query: 175 FVTHSVGGFLYLAMDQKLYVLLFKT 199
           +VTH    F+Y  + Q + +LLFK+
Sbjct: 68  YVTHETKHFIYFYLGQ-VAILLFKS 88

[Close]

BLAST of Cp4.1LG09g10560 vs. NCBI nr
Match: XP_023541664.1 (uncharacterized protein LOC111801755 [Cucurbita pepo subsp. pepo] >XP_023541665.1 uncharacterized protein LOC111801755 [Cucurbita pepo subsp. pepo] >XP_023541666.1 uncharacterized protein LOC111801755 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 394 bits (1012), Expect = 4.83e-138
Identity = 204/204 (100.00%), Postives = 204/204 (100.00%), Query Frame = 0


Query: 1   MAKPSSHLPSLAPPDPDSVANPPTCPKLESAMAAAAAPKSANPSPLMAVSSMIKSKPHLQ 60
           MAKPSSHLPSLAPPDPDSVANPPTCPKLESAMAAAAAPKSANPSPLMAVSSMIKSKPHLQ
Sbjct: 1   MAKPSSHLPSLAPPDPDSVANPPTCPKLESAMAAAAAPKSANPSPLMAVSSMIKSKPHLQ 60

Query: 61  KFANEEKELKGLQKGHRPDSMRPTVSLLRKGGRTKSFAASQVELADIFAKNGMKVVSVDM 120
           KFANEEKELKGLQKGHRPDSMRPTVSLLRKGGRTKSFAASQVELADIFAKNGMKVVSVDM
Sbjct: 61  KFANEEKELKGLQKGHRPDSMRPTVSLLRKGGRTKSFAASQVELADIFAKNGMKVVSVDM 120

Query: 121 PPAMQIHAVDYARKAHDSMEKFTSKALALSLKREFDGAYGPVWHCIVGTSFGSFVTHSVG 180
           PPAMQIHAVDYARKAHDSMEKFTSKALALSLKREFDGAYGPVWHCIVGTSFGSFVTHSVG
Sbjct: 121 PPAMQIHAVDYARKAHDSMEKFTSKALALSLKREFDGAYGPVWHCIVGTSFGSFVTHSVG 180

Query: 181 GFLYLAMDQKLYVLLFKTSVQRAD 204
           GFLYLAMDQKLYVLLFKTSVQRAD
Sbjct: 181 GFLYLAMDQKLYVLLFKTSVQRAD 204

[Close]

BLAST of Cp4.1LG09g10560 vs. NCBI nr
Match: KAG6573027.1 (hypothetical protein SDJN03_26914, partial [Cucurbita argyrosperma subsp. sororia] >KAG7012215.1 hypothetical protein SDJN02_24967, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 368 bits (944), Expect = 1.34e-127
Identity = 192/209 (91.87%), Postives = 199/209 (95.22%), Query Frame = 0


Query: 1   MAKPSSHLPSLAPPDPDSVANPPTCPKLESAMAAAAAPKSAN-----PSPLMAVSSMIKS 60
           MAKP+SHLP LAPPDPDSVANPPTCPKLESAMAAAAAPK ++       PL+AVSSMIKS
Sbjct: 1   MAKPTSHLPRLAPPDPDSVANPPTCPKLESAMAAAAAPKPSSLPKLHNQPLVAVSSMIKS 60

Query: 61  KPHLQKFANEEKELKGLQKGHRPDSMRPTVSLLRKGGRTKSFAASQVELADIFAKNGMKV 120
           KPHLQKFANEEKELKGLQKGHRPDSM PTVSLLRKGGRTKSFAASQVELADIFAKNG+KV
Sbjct: 61  KPHLQKFANEEKELKGLQKGHRPDSMTPTVSLLRKGGRTKSFAASQVELADIFAKNGIKV 120

Query: 121 VSVDMPPAMQIHAVDYARKAHDSMEKFTSKALALSLKREFDGAYGPVWHCIVGTSFGSFV 180
           VSVDMPPAMQIHAVDYARKAHDSMEKFTSKALALSLKREFDGAYGPVWHCIVGTSFGSFV
Sbjct: 121 VSVDMPPAMQIHAVDYARKAHDSMEKFTSKALALSLKREFDGAYGPVWHCIVGTSFGSFV 180

Query: 181 THSVGGFLYLAMDQKLYVLLFKTSVQRAD 204
           THS+GGFLYL+MDQKLYVLLFKTSVQRAD
Sbjct: 181 THSIGGFLYLSMDQKLYVLLFKTSVQRAD 209

[Close]

BLAST of Cp4.1LG09g10560 vs. NCBI nr
Match: XP_022954796.1 (uncharacterized protein LOC111456948 [Cucurbita moschata] >XP_022954797.1 uncharacterized protein LOC111456948 [Cucurbita moschata])

HSP 1 Score: 365 bits (936), Expect = 2.22e-126
Identity = 190/209 (90.91%), Postives = 199/209 (95.22%), Query Frame = 0


Query: 1   MAKPSSHLPSLAPPDPDSVANPPTCPKLESAMAAAAAPKSAN-----PSPLMAVSSMIKS 60
           MAKP+SHLP LAPPDPDSVANPPTCPKLESAMAAAAAPK ++       PL+AVSSMIKS
Sbjct: 1   MAKPTSHLPRLAPPDPDSVANPPTCPKLESAMAAAAAPKPSSLPKLHNQPLVAVSSMIKS 60

Query: 61  KPHLQKFANEEKELKGLQKGHRPDSMRPTVSLLRKGGRTKSFAASQVELADIFAKNGMKV 120
           KPHLQKFANE+KELKGLQKGH PDSMRPTVSLLRKGGRTKSFAASQVELADIFAKNG+KV
Sbjct: 61  KPHLQKFANEKKELKGLQKGHHPDSMRPTVSLLRKGGRTKSFAASQVELADIFAKNGIKV 120

Query: 121 VSVDMPPAMQIHAVDYARKAHDSMEKFTSKALALSLKREFDGAYGPVWHCIVGTSFGSFV 180
           VSVDMPPAMQIHAV+YARKAHDSMEKFTSKALALSLKREFDGAYGPVWHCIVGTSFGSFV
Sbjct: 121 VSVDMPPAMQIHAVNYARKAHDSMEKFTSKALALSLKREFDGAYGPVWHCIVGTSFGSFV 180

Query: 181 THSVGGFLYLAMDQKLYVLLFKTSVQRAD 204
           THS+GGFLYL+MDQKLYVLLFKTSVQRAD
Sbjct: 181 THSIGGFLYLSMDQKLYVLLFKTSVQRAD 209

[Close]

BLAST of Cp4.1LG09g10560 vs. NCBI nr
Match: XP_022994659.1 (uncharacterized protein LOC111490306 isoform X1 [Cucurbita maxima] >XP_022994660.1 uncharacterized protein LOC111490306 isoform X1 [Cucurbita maxima] >XP_022994661.1 uncharacterized protein LOC111490306 isoform X1 [Cucurbita maxima])

HSP 1 Score: 361 bits (927), Expect = 2.15e-124
Identity = 194/223 (87.00%), Postives = 197/223 (88.34%), Query Frame = 0


Query: 1   MAKPSSHLPSLAPPDPDSVANPPTCPKLESAMAAAAAPK-------------------SA 60
           MAKPSSHLPSLAPPDPDSVANPPTCPKLESAMAAAAAPK                   S+
Sbjct: 27  MAKPSSHLPSLAPPDPDSVANPPTCPKLESAMAAAAAPKPSPFTKLHNQPLVSSQRLKSS 86

Query: 61  NPSPLMAVSSMIKSKPHLQKFANEEKELKGLQKGHRPDSMRPTVSLLRKGGRTKSFAASQ 120
           NPSP MAVSSMI SKP LQKF NEEKELKG+QKGH PDSMRPTVSLLRKGGRTKSFAASQ
Sbjct: 87  NPSPRMAVSSMINSKPRLQKFDNEEKELKGIQKGHCPDSMRPTVSLLRKGGRTKSFAASQ 146

Query: 121 VELADIFAKNGMKVVSVDMPPAMQIHAVDYARKAHDSMEKFTSKALALSLKREFDGAYGP 180
           VEL DIFAKNGMKVVSVDMPPAMQIHAVD ARKAHDSMEKFTSKALALSLKREFDGAYGP
Sbjct: 147 VELIDIFAKNGMKVVSVDMPPAMQIHAVDCARKAHDSMEKFTSKALALSLKREFDGAYGP 206

Query: 181 VWHCIVGTSFGSFVTHSVGGFLYLAMDQKLYVLLFKTSVQRAD 204
           VWHCIVGTSFGSFVTHSVGGFLYL+MDQKLYVLLFKTSVQRAD
Sbjct: 207 VWHCIVGTSFGSFVTHSVGGFLYLSMDQKLYVLLFKTSVQRAD 249

[Close]

BLAST of Cp4.1LG09g10560 vs. NCBI nr
Match: XP_022994662.1 (uncharacterized protein LOC111490306 isoform X2 [Cucurbita maxima])

HSP 1 Score: 358 bits (920), Expect = 1.53e-123
Identity = 190/209 (90.91%), Postives = 195/209 (93.30%), Query Frame = 0


Query: 1   MAKPSSHLPSLAPPDPDSVANPPTCPKLESAMAAAAAPKSA-----NPSPLMAVSSMIKS 60
           MAKPSSHLPSLAPPDPDSVANPPTCPKLESAMAAAAAPK +     +  PL+AVSSMI S
Sbjct: 27  MAKPSSHLPSLAPPDPDSVANPPTCPKLESAMAAAAAPKPSPFTKLHNQPLVAVSSMINS 86

Query: 61  KPHLQKFANEEKELKGLQKGHRPDSMRPTVSLLRKGGRTKSFAASQVELADIFAKNGMKV 120
           KP LQKF NEEKELKG+QKGH PDSMRPTVSLLRKGGRTKSFAASQVEL DIFAKNGMKV
Sbjct: 87  KPRLQKFDNEEKELKGIQKGHCPDSMRPTVSLLRKGGRTKSFAASQVELIDIFAKNGMKV 146

Query: 121 VSVDMPPAMQIHAVDYARKAHDSMEKFTSKALALSLKREFDGAYGPVWHCIVGTSFGSFV 180
           VSVDMPPAMQIHAVD ARKAHDSMEKFTSKALALSLKREFDGAYGPVWHCIVGTSFGSFV
Sbjct: 147 VSVDMPPAMQIHAVDCARKAHDSMEKFTSKALALSLKREFDGAYGPVWHCIVGTSFGSFV 206

Query: 181 THSVGGFLYLAMDQKLYVLLFKTSVQRAD 204
           THSVGGFLYL+MDQKLYVLLFKTSVQRAD
Sbjct: 207 THSVGGFLYLSMDQKLYVLLFKTSVQRAD 235

[Close]

BLAST of Cp4.1LG09g10560 vs. ExPASy TrEMBL
Match: A0A6J1GRW3 (uncharacterized protein LOC111456948 OS=Cucurbita moschata OX=3662 GN=LOC111456948 PE=4 SV=1)

HSP 1 Score: 365 bits (936), Expect = 1.08e-126
Identity = 190/209 (90.91%), Postives = 199/209 (95.22%), Query Frame = 0


Query: 1   MAKPSSHLPSLAPPDPDSVANPPTCPKLESAMAAAAAPKSAN-----PSPLMAVSSMIKS 60
           MAKP+SHLP LAPPDPDSVANPPTCPKLESAMAAAAAPK ++       PL+AVSSMIKS
Sbjct: 1   MAKPTSHLPRLAPPDPDSVANPPTCPKLESAMAAAAAPKPSSLPKLHNQPLVAVSSMIKS 60

Query: 61  KPHLQKFANEEKELKGLQKGHRPDSMRPTVSLLRKGGRTKSFAASQVELADIFAKNGMKV 120
           KPHLQKFANE+KELKGLQKGH PDSMRPTVSLLRKGGRTKSFAASQVELADIFAKNG+KV
Sbjct: 61  KPHLQKFANEKKELKGLQKGHHPDSMRPTVSLLRKGGRTKSFAASQVELADIFAKNGIKV 120

Query: 121 VSVDMPPAMQIHAVDYARKAHDSMEKFTSKALALSLKREFDGAYGPVWHCIVGTSFGSFV 180
           VSVDMPPAMQIHAV+YARKAHDSMEKFTSKALALSLKREFDGAYGPVWHCIVGTSFGSFV
Sbjct: 121 VSVDMPPAMQIHAVNYARKAHDSMEKFTSKALALSLKREFDGAYGPVWHCIVGTSFGSFV 180

Query: 181 THSVGGFLYLAMDQKLYVLLFKTSVQRAD 204
           THS+GGFLYL+MDQKLYVLLFKTSVQRAD
Sbjct: 181 THSIGGFLYLSMDQKLYVLLFKTSVQRAD 209

[Close]

BLAST of Cp4.1LG09g10560 vs. ExPASy TrEMBL
Match: A0A6J1K3H0 (uncharacterized protein LOC111490306 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111490306 PE=4 SV=1)

HSP 1 Score: 361 bits (927), Expect = 1.04e-124
Identity = 194/223 (87.00%), Postives = 197/223 (88.34%), Query Frame = 0


Query: 1   MAKPSSHLPSLAPPDPDSVANPPTCPKLESAMAAAAAPK-------------------SA 60
           MAKPSSHLPSLAPPDPDSVANPPTCPKLESAMAAAAAPK                   S+
Sbjct: 27  MAKPSSHLPSLAPPDPDSVANPPTCPKLESAMAAAAAPKPSPFTKLHNQPLVSSQRLKSS 86

Query: 61  NPSPLMAVSSMIKSKPHLQKFANEEKELKGLQKGHRPDSMRPTVSLLRKGGRTKSFAASQ 120
           NPSP MAVSSMI SKP LQKF NEEKELKG+QKGH PDSMRPTVSLLRKGGRTKSFAASQ
Sbjct: 87  NPSPRMAVSSMINSKPRLQKFDNEEKELKGIQKGHCPDSMRPTVSLLRKGGRTKSFAASQ 146

Query: 121 VELADIFAKNGMKVVSVDMPPAMQIHAVDYARKAHDSMEKFTSKALALSLKREFDGAYGP 180
           VEL DIFAKNGMKVVSVDMPPAMQIHAVD ARKAHDSMEKFTSKALALSLKREFDGAYGP
Sbjct: 147 VELIDIFAKNGMKVVSVDMPPAMQIHAVDCARKAHDSMEKFTSKALALSLKREFDGAYGP 206

Query: 181 VWHCIVGTSFGSFVTHSVGGFLYLAMDQKLYVLLFKTSVQRAD 204
           VWHCIVGTSFGSFVTHSVGGFLYL+MDQKLYVLLFKTSVQRAD
Sbjct: 207 VWHCIVGTSFGSFVTHSVGGFLYLSMDQKLYVLLFKTSVQRAD 249

[Close]

BLAST of Cp4.1LG09g10560 vs. ExPASy TrEMBL
Match: A0A6J1JWH6 (uncharacterized protein LOC111490306 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111490306 PE=4 SV=1)

HSP 1 Score: 358 bits (920), Expect = 7.40e-124
Identity = 190/209 (90.91%), Postives = 195/209 (93.30%), Query Frame = 0


Query: 1   MAKPSSHLPSLAPPDPDSVANPPTCPKLESAMAAAAAPKSA-----NPSPLMAVSSMIKS 60
           MAKPSSHLPSLAPPDPDSVANPPTCPKLESAMAAAAAPK +     +  PL+AVSSMI S
Sbjct: 27  MAKPSSHLPSLAPPDPDSVANPPTCPKLESAMAAAAAPKPSPFTKLHNQPLVAVSSMINS 86

Query: 61  KPHLQKFANEEKELKGLQKGHRPDSMRPTVSLLRKGGRTKSFAASQVELADIFAKNGMKV 120
           KP LQKF NEEKELKG+QKGH PDSMRPTVSLLRKGGRTKSFAASQVEL DIFAKNGMKV
Sbjct: 87  KPRLQKFDNEEKELKGIQKGHCPDSMRPTVSLLRKGGRTKSFAASQVELIDIFAKNGMKV 146

Query: 121 VSVDMPPAMQIHAVDYARKAHDSMEKFTSKALALSLKREFDGAYGPVWHCIVGTSFGSFV 180
           VSVDMPPAMQIHAVD ARKAHDSMEKFTSKALALSLKREFDGAYGPVWHCIVGTSFGSFV
Sbjct: 147 VSVDMPPAMQIHAVDCARKAHDSMEKFTSKALALSLKREFDGAYGPVWHCIVGTSFGSFV 206

Query: 181 THSVGGFLYLAMDQKLYVLLFKTSVQRAD 204
           THSVGGFLYL+MDQKLYVLLFKTSVQRAD
Sbjct: 207 THSVGGFLYLSMDQKLYVLLFKTSVQRAD 235

[Close]

BLAST of Cp4.1LG09g10560 vs. ExPASy TrEMBL
Match: A0A6J1E7P6 (uncharacterized protein LOC111431561 OS=Cucurbita moschata OX=3662 GN=LOC111431561 PE=4 SV=1)

HSP 1 Score: 248 bits (633), Expect = 1.91e-79
Identity = 156/288 (54.17%), Postives = 174/288 (60.42%), Query Frame = 0


Query: 1   MAKPSSHLPSLAPPDPDS--------------VANPPTCP-KLESAMAAAAAP------- 60
           MAKP++ L  LAPPDPDS              +AN  + P KL+SA+AAAA P       
Sbjct: 1   MAKPTNQLRILAPPDPDSPPLKPPFRAPPSASMANNHSTPAKLDSAIAAAAPPPPNPSPL 60

Query: 61  --------------------KSANPSPLMAVSSMIKSKPHLQKFAN-------------- 120
                               K+ NP P + VS+M+KSKPHLQK A+              
Sbjct: 61  SNHIPFSKLHRQSDFSSQKPKNPNPPPPLTVSTMVKSKPHLQKIASGGDEKLSKLCKEMG 120

Query: 121 ----------------------------EEKELKGLQKGHRPDSMRPTVSLLRKGGRTKS 180
                                       +EKELK  QKGH   ++RPTVSLLRK GR +S
Sbjct: 121 TKKFFDEKKEANKGVNDDSKALYLVVKEKEKELKEPQKGHGLHTLRPTVSLLRKDGRRRS 180

Query: 181 FAASQVELADIFAKNGMKVVSVDMPPAMQIHAVDYARKAHDSMEKFTSKALALSLKREFD 204
            A  QVELADI AKNG+KVVSVDMPPAMQIHAVD ARKAHDSMEKFTSK LALSLKREFD
Sbjct: 181 LADPQVELADILAKNGVKVVSVDMPPAMQIHAVDCARKAHDSMEKFTSKTLALSLKREFD 240

[Close]

BLAST of Cp4.1LG09g10560 vs. ExPASy TrEMBL
Match: A0A6J1KET7 (uncharacterized protein LOC111495174 OS=Cucurbita maxima OX=3661 GN=LOC111495174 PE=4 SV=1)

HSP 1 Score: 247 bits (631), Expect = 3.71e-79
Identity = 154/287 (53.66%), Postives = 175/287 (60.98%), Query Frame = 0


Query: 1   MAKPSSHLPSLAPPDPDS--------------VANPPTCP-KLESAMAAAAAP------- 60
           MAKP++ L  LAPPDPDS              +AN  + P KL+SA+AAA++P       
Sbjct: 1   MAKPTNQLRILAPPDPDSPPLKPPFRAPPSASMANNHSTPAKLDSAIAAASSPPNPSPLS 60

Query: 61  -------------------KSANPSPLMAVSSMIKSKPHLQKFAN--------------- 120
                              K++NP P + V +M+KSKPHLQK A+               
Sbjct: 61  NHIPFSELHRQPGCLSQKPKNSNPPPSLTVPTMVKSKPHLQKIASGGDEKLSKLCKEMGT 120

Query: 121 ---------------------------EEKELKGLQKGHRPDSMRPTVSLLRKGGRTKSF 180
                                      +EKELK  QKGH   ++RPTVSLLRK GR +S 
Sbjct: 121 KKFFDEKKEANKGVDDDSKALYLVVKEKEKELKEPQKGHGLHTLRPTVSLLRKDGRRRSL 180

Query: 181 AASQVELADIFAKNGMKVVSVDMPPAMQIHAVDYARKAHDSMEKFTSKALALSLKREFDG 204
           A  QVELADI AKNG+KVVSVDMPPAMQIHAVD ARKAHDSMEKFTSK LALSLKREFD 
Sbjct: 181 ADPQVELADILAKNGVKVVSVDMPPAMQIHAVDCARKAHDSMEKFTSKTLALSLKREFDS 240

[Close]

BLAST of Cp4.1LG09g10560 vs. TAIR 10
Match: AT5G20110.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 115.5 bits (288), Expect = 4.9e-26
Identity = 72/169 (42.60%), Postives = 95/169 (56.21%), Query Frame = 0


Query: 55  SKPHLQKFANEEKELKGLQKGHRPDSMRPTVSL---------LRKGG-----------RT 114
           S P + +   EEK +    K H+   MR    L          +KGG             
Sbjct: 41  STPSISQQEVEEKPIVQSNKSHQNHVMRDIFELETTCSRNNERKKGGGAAEEGRKSVSHV 100

Query: 115 KSFAASQVELADIFAKNGMKVVSVDMPPAMQIHAVDYARKAHDSMEKFTSKALALSLKRE 174
           +   A+++E A       +++++ DMP  MQ HA   AR   DS+EKF+SK +A +LK+E
Sbjct: 101 ERDTAARIEAAAEMLT--VRILAADMPGFMQAHAFRCARMTLDSLEKFSSKHMAFNLKKE 160

Query: 175 FDGAYGPVWHCIVGTSFGSFVTHSVGGFLYLAMDQKLYVLLFKTSVQRA 204
           FD  YGP WHCIVG+SFGSFVTHS G F+Y +MD KLYVLLFKT V+ A
Sbjct: 161 FDKGYGPAWHCIVGSSFGSFVTHSTGCFIYFSMD-KLYVLLFKTKVRPA 206

[Close]

BLAST of Cp4.1LG09g10560 vs. TAIR 10
Match: AT1G23220.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 97.4 bits (241), Expect = 1.4e-20
Identity = 55/111 (49.55%), Postives = 72/111 (64.86%), Query Frame = 0


Query: 95  KSFAASQVELADIFAKNGMKVVSVDMPPAMQIHAVDYARKAHDSME-KFTSKALALSLKR 154
           K  A  Q +  D F    ++V + DMP   Q  A   +R+  ++   K  +K LA +LK+
Sbjct: 21  KKKAKEQQDQKDEF---NVRVRASDMPLPQQNRAFSLSREILNATPGKADNKRLAHALKK 80

Query: 155 EFDGAYGPVWHCIVGTSFGSFVTHSVGGFLYLAMDQKLYVLLFKTSVQRAD 205
           +FD AYGP WHCIVGTSFGS+VTHS GGFLY  +D K+YVLLFKT+V+  D
Sbjct: 81  DFDSAYGPAWHCIVGTSFGSYVTHSTGGFLYFQID-KVYVLLFKTAVEPLD 127

[Close]

BLAST of Cp4.1LG09g10560 vs. TAIR 10
Match: AT1G52240.2 (RHO guanyl-nucleotide exchange factor 11 )

HSP 1 Score: 72.0 bits (175), Expect = 6.2e-13
Identity = 35/79 (44.30%), Postives = 51/79 (64.56%), Query Frame = 0


Query: 119 DMPPAMQIHAVDYARKAHDSMEKFTSKALALSLKREFDGAYGPVWHCIVGTSFGSFVTHS 178
           DMP  MQ+ A+ +A +A D  + F  K++A  +K+EFD  YG  W C+VG++FG F THS
Sbjct: 12  DMPVKMQMQAMAFASQALDLFDVFDCKSIAGHIKKEFDERYGSGWQCVVGSNFGCFFTHS 71

Query: 179 VGGFLYLAMDQKLYVLLFK 198
            G F+Y  + + L  L+FK
Sbjct: 72  KGTFIYFQL-ETLKFLIFK 89

[Close]

BLAST of Cp4.1LG09g10560 vs. TAIR 10
Match: AT3G16120.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 72.0 bits (175), Expect = 6.2e-13
Identity = 37/84 (44.05%), Postives = 51/84 (60.71%), Query Frame = 0


Query: 114 KVVSVDMPPAMQIHAVDYARKAHDSMEKFTSKALALSLKREFDGAYGPVWHCIVGTSFGS 173
           KV   DMP  MQ+ A+  A ++ D  + F S ++A  +K+EFD  YG  W C+VGT+FG 
Sbjct: 7   KVEETDMPVKMQMQAMKIASQSLDLFDVFDSISIAAHIKKEFDERYGSGWQCVVGTNFGC 66

Query: 174 FVTHSVGGFLYLAMDQKLYVLLFK 198
           F THS G F+Y  +   L  L+FK
Sbjct: 67  FFTHSKGTFIYFHLG-TLNFLIFK 89

[Close]

BLAST of Cp4.1LG09g10560 vs. TAIR 10
Match: AT4G15930.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 71.2 bits (173), Expect = 1.1e-12
Identity = 39/85 (45.88%), Postives = 54/85 (63.53%), Query Frame = 0


Query: 115 VVSVDMPPAMQIHAVDYARKAHDSMEKFT-SKALALSLKREFDGAYGPVWHCIVGTSFGS 174
           + S DM   MQ  A++ A  A    EK++  K +A ++K+EFD  +G  WHCIVG +FGS
Sbjct: 42  IKSADMKDDMQKEAIEIAISA---FEKYSVEKDIAENIKKEFDKKHGATWHCIVGRNFGS 101

Query: 175 FVTHSVGGFLYLAMDQKLYVLLFKT 199
           +VTH    F+Y  +DQK  VLLFK+
Sbjct: 102 YVTHETNHFVYFYLDQKA-VLLFKS 122

The following BLAST results are available for this feature:

BLAST of Cp4.1LG09g10560 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O02414	2.3e-12	48.24	Dynein light chain LC6, flagellar outer arm OS=Heliocidaris crassispina OX=10431...	[more]
Q3MHR3	2.5e-11	45.88	Dynein light chain 2, cytoplasmic OS=Bos taurus OX=9913 GN=DYNLL2 PE=3 SV=1	[more]
Q96FJ2	2.5e-11	45.88	Dynein light chain 2, cytoplasmic OS=Homo sapiens OX=9606 GN=DYNLL2 PE=1 SV=1	[more]
Q9D0M5	2.5e-11	45.88	Dynein light chain 2, cytoplasmic OS=Mus musculus OX=10090 GN=Dynll2 PE=1 SV=1	[more]
Q78P75	2.5e-11	45.88	Dynein light chain 2, cytoplasmic OS=Rattus norvegicus OX=10116 GN=Dynll2 PE=1 S...	[more]

BLAST of Cp4.1LG09g10560 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023541664.1	4.83e-138	100.00	uncharacterized protein LOC111801755 [Cucurbita pepo subsp. pepo] >XP_023541665....	[more]
KAG6573027.1	1.34e-127	91.87	hypothetical protein SDJN03_26914, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022954796.1	2.22e-126	90.91	uncharacterized protein LOC111456948 [Cucurbita moschata] >XP_022954797.1 unchar...	[more]
XP_022994659.1	2.15e-124	87.00	uncharacterized protein LOC111490306 isoform X1 [Cucurbita maxima] >XP_022994660...	[more]
XP_022994662.1	1.53e-123	90.91	uncharacterized protein LOC111490306 isoform X2 [Cucurbita maxima]	[more]

BLAST of Cp4.1LG09g10560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GRW3	1.08e-126	90.91	uncharacterized protein LOC111456948 OS=Cucurbita moschata OX=3662 GN=LOC1114569...	[more]
A0A6J1K3H0	1.04e-124	87.00	uncharacterized protein LOC111490306 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1JWH6	7.40e-124	90.91	uncharacterized protein LOC111490306 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1E7P6	1.91e-79	54.17	uncharacterized protein LOC111431561 OS=Cucurbita moschata OX=3662 GN=LOC1114315...	[more]
A0A6J1KET7	3.71e-79	53.66	uncharacterized protein LOC111495174 OS=Cucurbita maxima OX=3661 GN=LOC111495174...	[more]

BLAST of Cp4.1LG09g10560 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G20110.1	4.9e-26	42.60	Dynein light chain type 1 family protein	[more]
AT1G23220.1	1.4e-20	49.55	Dynein light chain type 1 family protein	[more]
AT1G52240.2	6.2e-13	44.30	RHO guanyl-nucleotide exchange factor 11	[more]
AT3G16120.1	6.2e-13	44.05	Dynein light chain type 1 family protein	[more]
AT4G15930.1	1.1e-12	45.88	Dynein light chain type 1 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001372	Dynein light chain, type 1/2	SMART	SM01375	Dynein_light_2	coord: 108..198 e-value: 2.6E-32 score: 123.3
IPR001372	Dynein light chain, type 1/2	PFAM	PF01221	Dynein_light	coord: 114..198 e-value: 5.0E-26 score: 90.9
IPR001372	Dynein light chain, type 1/2	PANTHER	PTHR11886	DYNEIN LIGHT CHAIN	coord: 60..204
IPR037177	Dynein light chain superfamily	GENE3D	3.30.740.10	Protein Inhibitor Of Neuronal Nitric Oxide Synthase;	coord: 107..199 e-value: 3.1E-28 score: 99.6
IPR037177	Dynein light chain superfamily	SUPERFAMILY	54648	DLC	coord: 111..198
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..45
None	No IPR available	PANTHER	PTHR11886:SF80	INTRASTRAND CROSS-LINK RECOGNITION PROTEIN-LIKE	coord: 60..204

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG09g10560.1	Cp4.1LG09g10560.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007017	microtubule-based process
cellular_component	GO:0030286	dynein complex