Cp4.1LG09g10320 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG09g10320
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	RING-H2 finger protein ATL56-like
Location	Cp4.1LG09: 9091544 .. 9091954 (+)
RNA-Seq Expression	Cp4.1LG09g10320
Synteny	Cp4.1LG09g10320

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTATGGAGATTGTGGTGTCGGCGGTTCTGTTGCTGGTCGGAATCGCTGTTCTGGTAGTGATCCATGTCTGTATTGTGGGGAGAGCTTTCAGAGGAGAAAGGGAAGGGATTTGGAGAAGCAATTTGGGGAAGAACCTTTCAAATCAGGATTTGGAGAAGCTGCCTTGTTATGAGTACAAATCAGGGGAGAAACAGAGCACAAATGGCGTTGATTTGGAATGTGTTGTTTGTTTAGAGGGCTTCAAAACAGGGGAAAGATGCAGATTGTTGCCCAATTGCAGGCATAGCTTCCATGTTGAGTGCATAGATTCATGGCTTTTGAAGACACCCATTTGCCCAATTTGCAGAACTTGCGCTGTTGTTCCCAAATTTGGCTTGGTTTTGGAGCACCAAAATGACCCTTTATAA

mRNA sequence

ATGGTTATGGAGATTGTGGTGTCGGCGGTTCTGTTGCTGGTCGGAATCGCTGTTCTGGTAGTGATCCATGTCTGTATTGTGGGGAGAGCTTTCAGAGGAGAAAGGGAAGGGATTTGGAGAAGCAATTTGGGGAAGAACCTTTCAAATCAGGATTTGGAGAAGCTGCCTTGTTATGAGTACAAATCAGGGGAGAAACAGAGCACAAATGGCGTTGATTTGGAATGTGTTGTTTGTTTAGAGGGCTTCAAAACAGGGGAAAGATGCAGATTGTTGCCCAATTGCAGGCATAGCTTCCATGTTGAGTGCATAGATTCATGGCTTTTGAAGACACCCATTTGCCCAATTTGCAGAACTTGCGCTGTTGTTCCCAAATTTGGCTTGGTTTTGGAGCACCAAAATGACCCTTTATAA

Coding sequence (CDS)

ATGGTTATGGAGATTGTGGTGTCGGCGGTTCTGTTGCTGGTCGGAATCGCTGTTCTGGTAGTGATCCATGTCTGTATTGTGGGGAGAGCTTTCAGAGGAGAAAGGGAAGGGATTTGGAGAAGCAATTTGGGGAAGAACCTTTCAAATCAGGATTTGGAGAAGCTGCCTTGTTATGAGTACAAATCAGGGGAGAAACAGAGCACAAATGGCGTTGATTTGGAATGTGTTGTTTGTTTAGAGGGCTTCAAAACAGGGGAAAGATGCAGATTGTTGCCCAATTGCAGGCATAGCTTCCATGTTGAGTGCATAGATTCATGGCTTTTGAAGACACCCATTTGCCCAATTTGCAGAACTTGCGCTGTTGTTCCCAAATTTGGCTTGGTTTTGGAGCACCAAAATGACCCTTTATAA

Protein sequence

MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEREGIWRSNLGKNLSNQDLEKLPCYEYKSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFHVECIDSWLLKTPICPICRTCAVVPKFGLVLEHQNDPL

Homology

[Close]

BLAST of Cp4.1LG09g10320 vs. ExPASy Swiss-Prot
Match: P0C034 (RING-H2 finger protein ATL10 OS=Arabidopsis thaliana OX=3702 GN=ATL10 PE=2 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.2e-14
Identity = 35/82 (42.68%), Postives = 45/82 (54.88%), Query Frame = 0


Query: 40  RSNLGKNLSNQDLEKLPCYEYKSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFH 99
           R +  K +  + L   P   Y    + +  G+D ECV+CL  F +GE+ RLLP C H FH
Sbjct: 102 RGSSNKGIKKKALRMFPVVSY--SPEMNLPGLDEECVICLSDFVSGEQLRLLPKCNHGFH 161

Query: 100 VECIDSWLLKTPICPICRTCAV 122
           V CID WL +   CP CR C V
Sbjct: 162 VRCIDKWLQQHLTCPKCRNCLV 181

[Close]

BLAST of Cp4.1LG09g10320 vs. ExPASy Swiss-Prot
Match: Q8LBA0 (NEP1-interacting protein-like 2 OS=Arabidopsis thaliana OX=3702 GN=ATL24 PE=1 SV=2)

HSP 1 Score: 80.1 bits (196), Expect = 2.1e-14
Identity = 37/86 (43.02%), Postives = 49/86 (56.98%), Query Frame = 0


Query: 34  EREGIWRSNLGKNLSNQDLEKLPCYEYKSG--EKQSTNGVDLECVVCLEGFKTGERCRLL 93
           ERE ++     + LS   L KLPCY   S    +Q T+     C +CL+  KTGE  R L
Sbjct: 138 EREDVYGELEARGLSGDSLRKLPCYIMSSEMVRRQVTH-----CTICLQDIKTGEITRSL 197

Query: 94  PNCRHSFHVECIDSWLLKTPICPICR 118
           P C H+FH+ C+D WL++   CPICR
Sbjct: 198 PKCDHTFHLVCVDKWLIRHGSCPICR 218

[Close]

BLAST of Cp4.1LG09g10320 vs. ExPASy Swiss-Prot
Match: Q6NML0 (E3 ubiquitin-protein ligase ATL76 OS=Arabidopsis thaliana OX=3702 GN=ATL76 PE=1 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 3.6e-14
Identity = 35/82 (42.68%), Postives = 44/82 (53.66%), Query Frame = 0


Query: 40  RSNLGKNLSNQDLEKLPCYEYKSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFH 99
           RS+  K +  + L   P   Y    + +  G+  ECV+CL  F +GE+ RLLP C H FH
Sbjct: 102 RSSSNKGIKKKALRMFPVVSY--SREMNLPGIGEECVICLSDFVSGEQLRLLPKCNHGFH 161

Query: 100 VECIDSWLLKTPICPICRTCAV 122
           V CID WL     CP CR C V
Sbjct: 162 VRCIDKWLQHHLTCPKCRHCLV 181

[Close]

BLAST of Cp4.1LG09g10320 vs. ExPASy Swiss-Prot
Match: Q9LS99 (RING-H2 finger protein ATL77 OS=Arabidopsis thaliana OX=3702 GN=ATL77 PE=2 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 8.1e-14
Identity = 34/81 (41.98%), Postives = 46/81 (56.79%), Query Frame = 0


Query: 41  SNLGKNLSNQDLEKLPCYEYKSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFHV 100
           S++ K +  + L+ LP   Y    + +  GV  ECV+CL  F  GE+ R+LP C H FH+
Sbjct: 98  SSVNKGIKKKALKMLPVVNY--SPEINLPGVGEECVICLSDFVAGEQLRVLPKCNHGFHL 157

Query: 101 ECIDSWLLKTPICPICRTCAV 122
            CID WL +   CP CR C V
Sbjct: 158 RCIDKWLTQHMTCPKCRHCLV 176

[Close]

BLAST of Cp4.1LG09g10320 vs. ExPASy Swiss-Prot
Match: Q9M0C3 (RING-H2 finger protein ATL14 OS=Arabidopsis thaliana OX=3702 GN=ATL14 PE=2 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.1e-13
Identity = 35/78 (44.87%), Postives = 49/78 (62.82%), Query Frame = 0


Query: 40  RSNLGKNLSNQDLEKLPCYEYKSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFH 99
           R      LS + +++LP  ++K  E  S  G D +CVVC++GF+ G+ CR LP C H FH
Sbjct: 83  RHEYSDGLSPRCVKRLP--QFKYCEPSSEYGGD-DCVVCIDGFRQGQWCRKLPRCGHVFH 142

Query: 100 VECIDSWLLKTPICPICR 118
            +C+D WL+K   CPICR
Sbjct: 143 RKCVDLWLIKVSTCPICR 157

[Close]

BLAST of Cp4.1LG09g10320 vs. NCBI nr
Match: XP_022954431.1 (RING-H2 finger protein ATL56-like [Cucurbita moschata] >XP_023542202.1 RING-H2 finger protein ATL56-like [Cucurbita pepo subsp. pepo] >KAG6573050.1 RING-H2 finger protein ATL56, partial [Cucurbita argyrosperma subsp. sororia] >KAG7012238.1 RING-H2 finger protein ATL56, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 280 bits (716), Expect = 3.84e-95
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEREGIWRSNLGKNLSNQDLEKLPCYEY 60
           MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEREGIWRSNLGKNLSNQDLEKLPCYEY
Sbjct: 1   MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEREGIWRSNLGKNLSNQDLEKLPCYEY 60

Query: 61  KSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFHVECIDSWLLKTPICPICRTCA 120
           KSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFHVECIDSWLLKTPICPICRTCA
Sbjct: 61  KSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFHVECIDSWLLKTPICPICRTCA 120

Query: 121 VVPKFGLVLEHQNDPL 136
           VVPKFGLVLEHQNDPL
Sbjct: 121 VVPKFGLVLEHQNDPL 136

[Close]

BLAST of Cp4.1LG09g10320 vs. NCBI nr
Match: XP_022994122.1 (RING-H2 finger protein ATL56-like [Cucurbita maxima])

HSP 1 Score: 278 bits (712), Expect = 1.57e-94
Identity = 135/136 (99.26%), Postives = 135/136 (99.26%), Query Frame = 0


Query: 1   MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEREGIWRSNLGKNLSNQDLEKLPCYEY 60
           MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEREGIWRSNLGKNLSNQDLEKLPCYEY
Sbjct: 1   MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEREGIWRSNLGKNLSNQDLEKLPCYEY 60

Query: 61  KSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFHVECIDSWLLKTPICPICRTCA 120
           KSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFHVECIDSWLLKTPICPICRTCA
Sbjct: 61  KSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFHVECIDSWLLKTPICPICRTCA 120

Query: 121 VVPKFGLVLEHQNDPL 136
            VPKFGLVLEHQNDPL
Sbjct: 121 AVPKFGLVLEHQNDPL 136

[Close]

BLAST of Cp4.1LG09g10320 vs. NCBI nr
Match: XP_015868270.1 (RING-H2 finger protein ATL74-like [Ziziphus jujuba] >XP_015868724.1 RING-H2 finger protein ATL74-like [Ziziphus jujuba] >XP_015872990.1 RING-H2 finger protein ATL74-like [Ziziphus jujuba])

HSP 1 Score: 169 bits (429), Expect = 3.31e-51
Identity = 84/140 (60.00%), Postives = 104/140 (74.29%), Query Frame = 0


Query: 1   MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEREG-----IWRSNLG-KNLSNQDLEK 60
           MVMEIV+S +LL VGIAVLVVIHVCIVGRAF    +G     + RS++G K +SN+DL+ 
Sbjct: 1   MVMEIVISVILLFVGIAVLVVIHVCIVGRAFGRGNQGMVNMVVQRSSIGSKRMSNEDLKM 60

Query: 61  LPCYEYKSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFHVECIDSWLLKTPICP 120
           LPC++Y  G  + ++   ++C VCLE FK GE+CRLLPNCRHSFH  CIDSWLLKTPICP
Sbjct: 61  LPCFDYVDGRDKGSSSSPVDCAVCLENFKDGEKCRLLPNCRHSFHALCIDSWLLKTPICP 120

Query: 121 ICRTCAVVPKFGLVLEHQND 134
           ICRTCA  PK  ++L   + 
Sbjct: 121 ICRTCANPPKVDVILGEGSS 140

[Close]

BLAST of Cp4.1LG09g10320 vs. NCBI nr
Match: PON93371.1 (43kDa postsynaptic protein [Trema orientale])

HSP 1 Score: 167 bits (423), Expect = 2.46e-50
Identity = 85/133 (63.91%), Postives = 105/133 (78.95%), Query Frame = 0


Query: 1   MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEREGIWR---SNLG--KNLSNQDLEKL 60
           MVMEIV+S +LL VGIAVLVVIHVCIVGRAFR   +G+     SN+   KN+S++DL+ +
Sbjct: 1   MVMEIVISVILLFVGIAVLVVIHVCIVGRAFRRGNQGLGTAQGSNITGTKNMSSEDLKMI 60

Query: 61  PCYEYKSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFHVECIDSWLLKTPICPI 120
           PC++Y  G+ + T+ VD  C VCLE FKTG++CRLLP+CRHSFH +CIDSWLLK PICPI
Sbjct: 61  PCFDYMGGDNKGTSPVD--CAVCLENFKTGDKCRLLPSCRHSFHSQCIDSWLLKAPICPI 120

Query: 121 CRTCAVVPKFGLV 128
           CRT A VPK G+V
Sbjct: 121 CRTSAKVPKSGVV 131

[Close]

BLAST of Cp4.1LG09g10320 vs. NCBI nr
Match: TQD76870.1 (hypothetical protein C1H46_037576 [Malus baccata])

HSP 1 Score: 164 bits (414), Expect = 5.94e-49
Identity = 79/133 (59.40%), Postives = 102/133 (76.69%), Query Frame = 0


Query: 3   MEIVVSAVLLLVGIAVLVVIHVCIVGRAF-RGEREGI---WRSNLG--KNLSNQDLEKLP 62
           MEI++S +LL VG+AVLVVIHVCI+GRAF RG  +G+    RS++   K +SN++L  LP
Sbjct: 1   MEILISVILLFVGVAVLVVIHVCIIGRAFNRGHDQGVNLVQRSSIVAIKKMSNEELNMLP 60

Query: 63  CYEYKSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFHVECIDSWLLKTPICPIC 122
           C++Y + EK +T    ++C VCLE FK GE+CRLLPNCRHSFH +CIDSWLLKTP+CP+C
Sbjct: 61  CFDYTAEEKGTTTNHPVDCAVCLESFKRGEKCRLLPNCRHSFHAQCIDSWLLKTPVCPVC 120

Query: 123 RTCAVVPKFGLVL 129
           RTCA  PK  + L
Sbjct: 121 RTCAKTPKIDVSL 133

[Close]

BLAST of Cp4.1LG09g10320 vs. ExPASy TrEMBL
Match: A0A6J1GQW8 (RING-H2 finger protein ATL56-like OS=Cucurbita moschata OX=3662 GN=LOC111456690 PE=4 SV=1)

HSP 1 Score: 280 bits (716), Expect = 1.86e-95
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEREGIWRSNLGKNLSNQDLEKLPCYEY 60
           MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEREGIWRSNLGKNLSNQDLEKLPCYEY
Sbjct: 1   MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEREGIWRSNLGKNLSNQDLEKLPCYEY 60

Query: 61  KSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFHVECIDSWLLKTPICPICRTCA 120
           KSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFHVECIDSWLLKTPICPICRTCA
Sbjct: 61  KSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFHVECIDSWLLKTPICPICRTCA 120

Query: 121 VVPKFGLVLEHQNDPL 136
           VVPKFGLVLEHQNDPL
Sbjct: 121 VVPKFGLVLEHQNDPL 136

[Close]

BLAST of Cp4.1LG09g10320 vs. ExPASy TrEMBL
Match: A0A6J1JUU5 (RING-H2 finger protein ATL56-like OS=Cucurbita maxima OX=3661 GN=LOC111489951 PE=4 SV=1)

HSP 1 Score: 278 bits (712), Expect = 7.58e-95
Identity = 135/136 (99.26%), Postives = 135/136 (99.26%), Query Frame = 0


Query: 1   MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEREGIWRSNLGKNLSNQDLEKLPCYEY 60
           MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEREGIWRSNLGKNLSNQDLEKLPCYEY
Sbjct: 1   MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEREGIWRSNLGKNLSNQDLEKLPCYEY 60

Query: 61  KSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFHVECIDSWLLKTPICPICRTCA 120
           KSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFHVECIDSWLLKTPICPICRTCA
Sbjct: 61  KSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFHVECIDSWLLKTPICPICRTCA 120

Query: 121 VVPKFGLVLEHQNDPL 136
            VPKFGLVLEHQNDPL
Sbjct: 121 AVPKFGLVLEHQNDPL 136

[Close]

BLAST of Cp4.1LG09g10320 vs. ExPASy TrEMBL
Match: A0A6P3YXL3 (RING-H2 finger protein ATL74-like OS=Ziziphus jujuba OX=326968 GN=LOC107406134 PE=4 SV=1)

HSP 1 Score: 169 bits (429), Expect = 1.60e-51
Identity = 84/140 (60.00%), Postives = 104/140 (74.29%), Query Frame = 0


Query: 1   MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEREG-----IWRSNLG-KNLSNQDLEK 60
           MVMEIV+S +LL VGIAVLVVIHVCIVGRAF    +G     + RS++G K +SN+DL+ 
Sbjct: 1   MVMEIVISVILLFVGIAVLVVIHVCIVGRAFGRGNQGMVNMVVQRSSIGSKRMSNEDLKM 60

Query: 61  LPCYEYKSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFHVECIDSWLLKTPICP 120
           LPC++Y  G  + ++   ++C VCLE FK GE+CRLLPNCRHSFH  CIDSWLLKTPICP
Sbjct: 61  LPCFDYVDGRDKGSSSSPVDCAVCLENFKDGEKCRLLPNCRHSFHALCIDSWLLKTPICP 120

Query: 121 ICRTCAVVPKFGLVLEHQND 134
           ICRTCA  PK  ++L   + 
Sbjct: 121 ICRTCANPPKVDVILGEGSS 140

[Close]

BLAST of Cp4.1LG09g10320 vs. ExPASy TrEMBL
Match: A0A2P5F6F5 (43kDa postsynaptic protein OS=Trema orientale OX=63057 GN=TorRG33x02_109420 PE=4 SV=1)

HSP 1 Score: 167 bits (423), Expect = 1.19e-50
Identity = 85/133 (63.91%), Postives = 105/133 (78.95%), Query Frame = 0


Query: 1   MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEREGIWR---SNLG--KNLSNQDLEKL 60
           MVMEIV+S +LL VGIAVLVVIHVCIVGRAFR   +G+     SN+   KN+S++DL+ +
Sbjct: 1   MVMEIVISVILLFVGIAVLVVIHVCIVGRAFRRGNQGLGTAQGSNITGTKNMSSEDLKMI 60

Query: 61  PCYEYKSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFHVECIDSWLLKTPICPI 120
           PC++Y  G+ + T+ VD  C VCLE FKTG++CRLLP+CRHSFH +CIDSWLLK PICPI
Sbjct: 61  PCFDYMGGDNKGTSPVD--CAVCLENFKTGDKCRLLPSCRHSFHSQCIDSWLLKAPICPI 120

Query: 121 CRTCAVVPKFGLV 128
           CRT A VPK G+V
Sbjct: 121 CRTSAKVPKSGVV 131

[Close]

BLAST of Cp4.1LG09g10320 vs. ExPASy TrEMBL
Match: A0A540KRN2 (RING-type domain-containing protein OS=Malus baccata OX=106549 GN=C1H46_037576 PE=4 SV=1)

HSP 1 Score: 164 bits (414), Expect = 2.88e-49
Identity = 79/133 (59.40%), Postives = 102/133 (76.69%), Query Frame = 0


Query: 3   MEIVVSAVLLLVGIAVLVVIHVCIVGRAF-RGEREGI---WRSNLG--KNLSNQDLEKLP 62
           MEI++S +LL VG+AVLVVIHVCI+GRAF RG  +G+    RS++   K +SN++L  LP
Sbjct: 1   MEILISVILLFVGVAVLVVIHVCIIGRAFNRGHDQGVNLVQRSSIVAIKKMSNEELNMLP 60

Query: 63  CYEYKSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFHVECIDSWLLKTPICPIC 122
           C++Y + EK +T    ++C VCLE FK GE+CRLLPNCRHSFH +CIDSWLLKTP+CP+C
Sbjct: 61  CFDYTAEEKGTTTNHPVDCAVCLESFKRGEKCRLLPNCRHSFHAQCIDSWLLKTPVCPVC 120

Query: 123 RTCAVVPKFGLVL 129
           RTCA  PK  + L
Sbjct: 121 RTCAKTPKIDVSL 133

[Close]

BLAST of Cp4.1LG09g10320 vs. TAIR 10
Match: AT1G49220.1 (RING/U-box superfamily protein )

HSP 1 Score: 80.9 bits (198), Expect = 8.9e-16
Identity = 35/82 (42.68%), Postives = 45/82 (54.88%), Query Frame = 0


Query: 40  RSNLGKNLSNQDLEKLPCYEYKSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFH 99
           R +  K +  + L   P   Y    + +  G+D ECV+CL  F +GE+ RLLP C H FH
Sbjct: 102 RGSSNKGIKKKALRMFPVVSY--SPEMNLPGLDEECVICLSDFVSGEQLRLLPKCNHGFH 161

Query: 100 VECIDSWLLKTPICPICRTCAV 122
           V CID WL +   CP CR C V
Sbjct: 162 VRCIDKWLQQHLTCPKCRNCLV 181

[Close]

BLAST of Cp4.1LG09g10320 vs. TAIR 10
Match: AT1G74410.1 (RING/U-box superfamily protein )

HSP 1 Score: 80.1 bits (196), Expect = 1.5e-15
Identity = 37/86 (43.02%), Postives = 49/86 (56.98%), Query Frame = 0


Query: 34  EREGIWRSNLGKNLSNQDLEKLPCYEYKSG--EKQSTNGVDLECVVCLEGFKTGERCRLL 93
           ERE ++     + LS   L KLPCY   S    +Q T+     C +CL+  KTGE  R L
Sbjct: 138 EREDVYGELEARGLSGDSLRKLPCYIMSSEMVRRQVTH-----CTICLQDIKTGEITRSL 197

Query: 94  PNCRHSFHVECIDSWLLKTPICPICR 118
           P C H+FH+ C+D WL++   CPICR
Sbjct: 198 PKCDHTFHLVCVDKWLIRHGSCPICR 218

[Close]

BLAST of Cp4.1LG09g10320 vs. TAIR 10
Match: AT1G49210.1 (RING/U-box superfamily protein )

HSP 1 Score: 79.3 bits (194), Expect = 2.6e-15
Identity = 35/82 (42.68%), Postives = 44/82 (53.66%), Query Frame = 0


Query: 40  RSNLGKNLSNQDLEKLPCYEYKSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFH 99
           RS+  K +  + L   P   Y    + +  G+  ECV+CL  F +GE+ RLLP C H FH
Sbjct: 102 RSSSNKGIKKKALRMFPVVSY--SREMNLPGIGEECVICLSDFVSGEQLRLLPKCNHGFH 161

Query: 100 VECIDSWLLKTPICPICRTCAV 122
           V CID WL     CP CR C V
Sbjct: 162 VRCIDKWLQHHLTCPKCRHCLV 181

[Close]

BLAST of Cp4.1LG09g10320 vs. TAIR 10
Match: AT3G18773.1 (RING/U-box superfamily protein )

HSP 1 Score: 78.2 bits (191), Expect = 5.7e-15
Identity = 34/81 (41.98%), Postives = 46/81 (56.79%), Query Frame = 0


Query: 41  SNLGKNLSNQDLEKLPCYEYKSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFHV 100
           S++ K +  + L+ LP   Y    + +  GV  ECV+CL  F  GE+ R+LP C H FH+
Sbjct: 98  SSVNKGIKKKALKMLPVVNY--SPEINLPGVGEECVICLSDFVAGEQLRVLPKCNHGFHL 157

Query: 101 ECIDSWLLKTPICPICRTCAV 122
            CID WL +   CP CR C V
Sbjct: 158 RCIDKWLTQHMTCPKCRHCLV 176

[Close]

BLAST of Cp4.1LG09g10320 vs. TAIR 10
Match: AT4G30370.1 (RING/U-box superfamily protein )

HSP 1 Score: 77.8 bits (190), Expect = 7.5e-15
Identity = 35/78 (44.87%), Postives = 49/78 (62.82%), Query Frame = 0


Query: 40  RSNLGKNLSNQDLEKLPCYEYKSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFH 99
           R      LS + +++LP  ++K  E  S  G D +CVVC++GF+ G+ CR LP C H FH
Sbjct: 83  RHEYSDGLSPRCVKRLP--QFKYCEPSSEYGGD-DCVVCIDGFRQGQWCRKLPRCGHVFH 142

Query: 100 VECIDSWLLKTPICPICR 118
            +C+D WL+K   CPICR
Sbjct: 143 RKCVDLWLIKVSTCPICR 157

The following BLAST results are available for this feature:

BLAST of Cp4.1LG09g10320 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0C034	1.2e-14	42.68	RING-H2 finger protein ATL10 OS=Arabidopsis thaliana OX=3702 GN=ATL10 PE=2 SV=1	[more]
Q8LBA0	2.1e-14	43.02	NEP1-interacting protein-like 2 OS=Arabidopsis thaliana OX=3702 GN=ATL24 PE=1 SV...	[more]
Q6NML0	3.6e-14	42.68	E3 ubiquitin-protein ligase ATL76 OS=Arabidopsis thaliana OX=3702 GN=ATL76 PE=1 ...	[more]
Q9LS99	8.1e-14	41.98	RING-H2 finger protein ATL77 OS=Arabidopsis thaliana OX=3702 GN=ATL77 PE=2 SV=1	[more]
Q9M0C3	1.1e-13	44.87	RING-H2 finger protein ATL14 OS=Arabidopsis thaliana OX=3702 GN=ATL14 PE=2 SV=1	[more]

BLAST of Cp4.1LG09g10320 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022954431.1	3.84e-95	100.00	RING-H2 finger protein ATL56-like [Cucurbita moschata] >XP_023542202.1 RING-H2 f...	[more]
XP_022994122.1	1.57e-94	99.26	RING-H2 finger protein ATL56-like [Cucurbita maxima]	[more]
XP_015868270.1	3.31e-51	60.00	RING-H2 finger protein ATL74-like [Ziziphus jujuba] >XP_015868724.1 RING-H2 fing...	[more]
PON93371.1	2.46e-50	63.91	43kDa postsynaptic protein [Trema orientale]	[more]
TQD76870.1	5.94e-49	59.40	hypothetical protein C1H46_037576 [Malus baccata]	[more]

BLAST of Cp4.1LG09g10320 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GQW8	1.86e-95	100.00	RING-H2 finger protein ATL56-like OS=Cucurbita moschata OX=3662 GN=LOC111456690 ...	[more]
A0A6J1JUU5	7.58e-95	99.26	RING-H2 finger protein ATL56-like OS=Cucurbita maxima OX=3661 GN=LOC111489951 PE...	[more]
A0A6P3YXL3	1.60e-51	60.00	RING-H2 finger protein ATL74-like OS=Ziziphus jujuba OX=326968 GN=LOC107406134 P...	[more]
A0A2P5F6F5	1.19e-50	63.91	43kDa postsynaptic protein OS=Trema orientale OX=63057 GN=TorRG33x02_109420 PE=4...	[more]
A0A540KRN2	2.88e-49	59.40	RING-type domain-containing protein OS=Malus baccata OX=106549 GN=C1H46_037576 P...	[more]

BLAST of Cp4.1LG09g10320 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G49220.1	8.9e-16	42.68	RING/U-box superfamily protein	[more]
AT1G74410.1	1.5e-15	43.02	RING/U-box superfamily protein	[more]
AT1G49210.1	2.6e-15	42.68	RING/U-box superfamily protein	[more]
AT3G18773.1	5.7e-15	41.98	RING/U-box superfamily protein	[more]
AT4G30370.1	7.5e-15	44.87	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 75..116 e-value: 1.3E-6 score: 38.0
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 74..117 e-value: 6.9E-13 score: 48.7
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 75..117 score: 12.031935
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 37..121 e-value: 2.2E-20 score: 74.1
None	No IPR available	PANTHER	PTHR45768:SF13	TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED	coord: 1..132
None	No IPR available	PANTHER	PTHR45768	E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE	coord: 1..132
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 69..123

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG09g10320.1	Cp4.1LG09g10320.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane