Cp4.1LG09g10070 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG09g10070
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	LOB domain-containing protein
Location	Cp4.1LG09: 8933543 .. 8934946 (+)
RNA-Seq Expression	Cp4.1LG09g10070
Synteny	Cp4.1LG09g10070

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTGTTCTTCAAAATTCAAGGCTCTTATGAGTTCATTCATCTGATTTAAGCTTATTTGGTGGTGTTCTTCATATAACGTTAGGTACCCATTTCTTCTAAGAAGCTGCAAAGCAAGGATCTTGAAATTGAAAGCTCTAAGCAACCCAAAAGGTAGCCTCTTTCAGTCTTTTCTTCAAAGAACTTTAATGGGTTCGTGTTGTTCTTGTTATGAACACACATAAAAAGTACCAAAACAACAAAAAGGAAGAGGTTTGGTGCCAAAATTAGCAGTTTTTTTAGATGGGGTTTTCTATTTTTCATTGAAAAAGCTAAAGGGATTCATAAGATTTGAAGAAATCTTCAAAGTTTTCATCTTTTTTTGTCAAAACTAACCATCTTTTTTCGAAAATTAGAGGTTTTTTTCACAAGATTTGAAGAAATCTACAAAGTTTTCATCTTTTTTGGTCAAAATTAACCATTTTTTTTGGAAAATTAGAAGTTTTTTTTCACAAGATTTGAAGAAATCCACCAAGTTTTCATCTTTTTAGGTCAAAATTAACCATTTTTTTGGAAATTTAGAAGTTTTTTTTCACAAGATTTGAAGAAACCCACAAAGTTTTCATCTTTTTATGCCAAAATTAACCATCTTTTTTCGAAAATTAAAAGTTTTTTTCACAAAATTTTCATCTTTTTTGGTCAAAATTAACCATTTTTTTGGAAATTTAGAAGCTTTTTTCACAAGATTTGAAGAAACCCACAAAGTTATCATCTTTTTTGGTCAAAATTAACCATTTGTTTGCTTGAAATTCCAATTTTGCAGATCAAAATGGGATCATCATCAAGAACAGAAACAAGCCATTACTACAGCCCTTGTGCAGCCTGCAAATTCCTAAGAAGAAAATGCATAGCAGGGTGTGTTTATGCGCCATATTTTCCACCAGAGGACCCTCAAAAATTTGCCAATGTTCATAAGGTTTTTGGAGCAAGCAACGTAGCCAAGCTTCTCAACGAAGTTCTTCCTCATCAAAGACAAGACGCCGTCGTTTCACTTGCCTATGAAGCCGAGGCTAGAATAAAAGATCCTGTTTATGGCTGCGTTGGTGCCATTTCATGCCTCCAAAAACAGGTCCAAAGGCTCCAAAAGGAGCTCGATGCAGCTAAAGCTCGTCTTTGTCTCTTCTCTTTCACTGACTTTTCAGCTCCCTTTTCATCTCAGCCTCAAATTATTAGTCCTCCTATGATTTGGAATAGTAACAATTATGATATCGTTTATGCTAATTCTTCTATGTATTTTAATGGAGGAATTTGAAGGAATTTGGAAGGAATTTGAAGGAATTTGGAGGAATTTGGAAGGAATTTGAAGGAATTTGGAGGAATTTTGAGGAATTTGGAAGGAATTTGGAGGAATTAGGCTCCATGTGA

mRNA sequence

ATGAGTATCAAAATGGGATCATCATCAAGAACAGAAACAAGCCATTACTACAGCCCTTGTGCAGCCTGCAAATTCCTAAGAAGAAAATGCATAGCAGGGTGTGTTTATGCGCCATATTTTCCACCAGAGGACCCTCAAAAATTTGCCAATGTTCATAAGGTTTTTGGAGCAAGCAACGTAGCCAAGCTTCTCAACGAAGTTCTTCCTCATCAAAGACAAGACGCCGTCGTTTCACTTGCCTATGAAGCCGAGGCTAGAATAAAAGATCCTGAATTTGGAAGGAATTTGAAGGAATTTGGAGGAATTTGGAAGGAATTTGAAGGAATTTGGAGGAATTTTGAGGAATTTGGAAGGAATTTGGAGGAATTAGGCTCCATGTGA

Coding sequence (CDS)

ATGAGTATCAAAATGGGATCATCATCAAGAACAGAAACAAGCCATTACTACAGCCCTTGTGCAGCCTGCAAATTCCTAAGAAGAAAATGCATAGCAGGGTGTGTTTATGCGCCATATTTTCCACCAGAGGACCCTCAAAAATTTGCCAATGTTCATAAGGTTTTTGGAGCAAGCAACGTAGCCAAGCTTCTCAACGAAGTTCTTCCTCATCAAAGACAAGACGCCGTCGTTTCACTTGCCTATGAAGCCGAGGCTAGAATAAAAGATCCTGAATTTGGAAGGAATTTGAAGGAATTTGGAGGAATTTGGAAGGAATTTGAAGGAATTTGGAGGAATTTTGAGGAATTTGGAAGGAATTTGGAGGAATTAGGCTCCATGTGA

Protein sequence

MSIKMGSSSRTETSHYYSPCAACKFLRRKCIAGCVYAPYFPPEDPQKFANVHKVFGASNVAKLLNEVLPHQRQDAVVSLAYEAEARIKDPEFGRNLKEFGGIWKEFEGIWRNFEEFGRNLEELGSM

Homology

[Close]

BLAST of Cp4.1LG09g10070 vs. ExPASy Swiss-Prot
Match: Q9FML4 (Protein LATERAL ORGAN BOUNDARIES OS=Arabidopsis thaliana OX=3702 GN=LOB PE=1 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 8.5e-34
Identity = 66/89 (74.16%), Postives = 77/89 (86.52%), Query Frame = 0


Query: 5  MGSSSRTETSHYYSPCAACKFLRRKCIAGCVYAPYFPPEDPQKFANVHKVFGASNVAKLL 64
          M SSS +    Y SPCAACKFLRRKC+ GC++APYFPPE+P KFANVHK+FGASNV KLL
Sbjct: 1  MASSSNS----YNSPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLL 60

Query: 65 NEVLPHQRQDAVVSLAYEAEARIKDPEFG 94
          NE+LPHQR+DAV SLAYEAEAR++DP +G
Sbjct: 61 NELLPHQREDAVNSLAYEAEARVRDPVYG 85

[Close]

BLAST of Cp4.1LG09g10070 vs. ExPASy Swiss-Prot
Match: Q8L8Q3 (LOB domain-containing protein 25 OS=Arabidopsis thaliana OX=3702 GN=LBD25 PE=2 SV=3)

HSP 1 Score: 135.6 bits (340), Expect = 4.0e-31
Identity = 59/76 (77.63%), Postives = 70/76 (92.11%), Query Frame = 0


Query: 18  SPCAACKFLRRKCIAGCVYAPYFPPEDPQKFANVHKVFGASNVAKLLNEVLPHQRQDAVV 77
           SPCAACKFLRRKC + CV+APYFPPE+P KFANVH++FGASNV+K+L+EV PHQR+DAV 
Sbjct: 38  SPCAACKFLRRKCTSDCVFAPYFPPEEPTKFANVHRIFGASNVSKILHEVAPHQREDAVN 97

Query: 78  SLAYEAEARIKDPEFG 94
           SLAYEAEAR+KDP +G
Sbjct: 98  SLAYEAEARLKDPVYG 113

[Close]

BLAST of Cp4.1LG09g10070 vs. ExPASy Swiss-Prot
Match: O04479 (Protein ASYMMETRIC LEAVES 2 OS=Arabidopsis thaliana OX=3702 GN=AS2 PE=1 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 6.3e-29
Identity = 58/76 (76.32%), Postives = 66/76 (86.84%), Query Frame = 0


Query: 18 SPCAACKFLRRKCIAGCVYAPYFPPEDPQKFANVHKVFGASNVAKLLNEVLPHQRQDAVV 77
          SPCAACKFLRRKC   CV+APYFPP+ PQKFANVHKVFGASNV KLLNE+ P QR+DAV 
Sbjct: 8  SPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPSQREDAVN 67

Query: 78 SLAYEAEARIKDPEFG 94
          SLAYEA+ R++DP +G
Sbjct: 68 SLAYEADMRLRDPVYG 83

[Close]

BLAST of Cp4.1LG09g10070 vs. ExPASy Swiss-Prot
Match: Q9FKZ3 (LOB domain-containing protein 36 OS=Arabidopsis thaliana OX=3702 GN=LBD36 PE=2 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 2.4e-28
Identity = 58/76 (76.32%), Postives = 66/76 (86.84%), Query Frame = 0


Query: 18 SPCAACKFLRRKCIAGCVYAPYFPPEDPQKFANVHKVFGASNVAKLLNEVLPHQRQDAVV 77
          SPCAACKFLRRKC   CV+APYFPP+ PQKFA VHKVFGASNVAKLLNE+  +QR+DAV 
Sbjct: 6  SPCAACKFLRRKCTQECVFAPYFPPDQPQKFAFVHKVFGASNVAKLLNELASNQREDAVN 65

Query: 78 SLAYEAEARIKDPEFG 94
          SL YEAEAR++DP +G
Sbjct: 66 SLFYEAEARLRDPVYG 81

[Close]

BLAST of Cp4.1LG09g10070 vs. ExPASy Swiss-Prot
Match: A2WXT0 (LOB domain-containing protein 6 OS=Oryza sativa subsp. indica OX=39946 GN=LBD6 PE=3 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 4.1e-28
Identity = 57/92 (61.96%), Postives = 72/92 (78.26%), Query Frame = 0


Query: 2   SIKMGSSSRTETSHYYSPCAACKFLRRKCIAGCVYAPYFPPEDPQKFANVHKVFGASNVA 61
           S    +++ T      SPCAACKFLRRKC   CV+APYFPP++PQKF +VH+VFGASNV 
Sbjct: 21  SASASAAANTAACGTGSPCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVT 80

Query: 62  KLLNEVLPHQRQDAVVSLAYEAEARIKDPEFG 94
           KLLNE+ P+QR+DAV SLAYEA+ R++DP +G
Sbjct: 81  KLLNELHPYQREDAVNSLAYEADMRLRDPVYG 112

[Close]

BLAST of Cp4.1LG09g10070 vs. NCBI nr
Match: XP_023542328.1 (protein LATERAL ORGAN BOUNDARIES-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 184 bits (467), Expect = 5.07e-57
Identity = 87/89 (97.75%), Postives = 88/89 (98.88%), Query Frame = 0


Query: 5  MGSSSRTETSHYYSPCAACKFLRRKCIAGCVYAPYFPPEDPQKFANVHKVFGASNVAKLL 64
          MGSSSRTETSHYYSPCAACKFLRRKCIAGCVYAPYFPPEDPQKFANVHKVFGASNVAKLL
Sbjct: 1  MGSSSRTETSHYYSPCAACKFLRRKCIAGCVYAPYFPPEDPQKFANVHKVFGASNVAKLL 60

Query: 65 NEVLPHQRQDAVVSLAYEAEARIKDPEFG 93
          NEVLPHQRQDAVVSLAYEAEARIKDP +G
Sbjct: 61 NEVLPHQRQDAVVSLAYEAEARIKDPVYG 89

[Close]

BLAST of Cp4.1LG09g10070 vs. NCBI nr
Match: XP_022994675.1 (protein LATERAL ORGAN BOUNDARIES-like [Cucurbita maxima])

HSP 1 Score: 184 bits (467), Expect = 5.07e-57
Identity = 87/89 (97.75%), Postives = 88/89 (98.88%), Query Frame = 0


Query: 5  MGSSSRTETSHYYSPCAACKFLRRKCIAGCVYAPYFPPEDPQKFANVHKVFGASNVAKLL 64
          MGSSSRTETSHYYSPCAACKFLRRKCIAGCVYAPYFPPEDPQKFANVHKVFGASNVAKLL
Sbjct: 1  MGSSSRTETSHYYSPCAACKFLRRKCIAGCVYAPYFPPEDPQKFANVHKVFGASNVAKLL 60

Query: 65 NEVLPHQRQDAVVSLAYEAEARIKDPEFG 93
          NEVLPHQRQDAVVSLAYEAEARIKDP +G
Sbjct: 61 NEVLPHQRQDAVVSLAYEAEARIKDPVYG 89

[Close]

BLAST of Cp4.1LG09g10070 vs. NCBI nr
Match: XP_022954529.1 (protein LATERAL ORGAN BOUNDARIES-like [Cucurbita moschata] >KAG7012263.1 Protein LATERAL ORGAN BOUNDARIES, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 183 bits (464), Expect = 1.45e-56
Identity = 86/89 (96.63%), Postives = 88/89 (98.88%), Query Frame = 0


Query: 5  MGSSSRTETSHYYSPCAACKFLRRKCIAGCVYAPYFPPEDPQKFANVHKVFGASNVAKLL 64
          MGSSSRTETSHYYSPCAAC+FLRRKCIAGCVYAPYFPPEDPQKFANVHKVFGASNVAKLL
Sbjct: 1  MGSSSRTETSHYYSPCAACRFLRRKCIAGCVYAPYFPPEDPQKFANVHKVFGASNVAKLL 60

Query: 65 NEVLPHQRQDAVVSLAYEAEARIKDPEFG 93
          NEVLPHQRQDAVVSLAYEAEARIKDP +G
Sbjct: 61 NEVLPHQRQDAVVSLAYEAEARIKDPVYG 89

[Close]

BLAST of Cp4.1LG09g10070 vs. NCBI nr
Match: KAG6573077.1 (Protein LATERAL ORGAN BOUNDARIES, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 182 bits (461), Expect = 4.15e-56
Identity = 86/89 (96.63%), Postives = 87/89 (97.75%), Query Frame = 0


Query: 5  MGSSSRTETSHYYSPCAACKFLRRKCIAGCVYAPYFPPEDPQKFANVHKVFGASNVAKLL 64
          MGSSSRTETSHYYSPCAACKFLRRKCIAGCVYAPYFPPEDPQKFANVHKVFGASNVAKLL
Sbjct: 1  MGSSSRTETSHYYSPCAACKFLRRKCIAGCVYAPYFPPEDPQKFANVHKVFGASNVAKLL 60

Query: 65 NEVLPHQRQDAVVSLAYEAEARIKDPEFG 93
          NEVLPHQRQDAVVSLAYEA ARIKDP +G
Sbjct: 61 NEVLPHQRQDAVVSLAYEAAARIKDPVYG 89

[Close]

BLAST of Cp4.1LG09g10070 vs. NCBI nr
Match: XP_022924080.1 (protein LATERAL ORGAN BOUNDARIES-like [Cucurbita moschata] >KAG6584203.1 Protein LATERAL ORGAN BOUNDARIES, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019799.1 Protein LATERAL ORGAN BOUNDARIES, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 166 bits (419), Expect = 9.85e-50
Identity = 77/91 (84.62%), Postives = 87/91 (95.60%), Query Frame = 0


Query: 3  IKMGSSSRTETSHYYSPCAACKFLRRKCIAGCVYAPYFPPEDPQKFANVHKVFGASNVAK 62
          ++MGS + T T+HYYSPCAACKFLRRKCIAGC++APYFPPE+PQKFANVHKVFGASNVAK
Sbjct: 1  MEMGSLA-TGTNHYYSPCAACKFLRRKCIAGCIFAPYFPPEEPQKFANVHKVFGASNVAK 60

Query: 63 LLNEVLPHQRQDAVVSLAYEAEARIKDPEFG 93
          LLNEVLPHQRQDAVVSLAY+AEARI+DP +G
Sbjct: 61 LLNEVLPHQRQDAVVSLAYQAEARIRDPVYG 90

[Close]

BLAST of Cp4.1LG09g10070 vs. ExPASy TrEMBL
Match: A0A6J1K206 (protein LATERAL ORGAN BOUNDARIES-like OS=Cucurbita maxima OX=3661 GN=LOC111490317 PE=3 SV=1)

HSP 1 Score: 184 bits (467), Expect = 2.45e-57
Identity = 87/89 (97.75%), Postives = 88/89 (98.88%), Query Frame = 0


Query: 5  MGSSSRTETSHYYSPCAACKFLRRKCIAGCVYAPYFPPEDPQKFANVHKVFGASNVAKLL 64
          MGSSSRTETSHYYSPCAACKFLRRKCIAGCVYAPYFPPEDPQKFANVHKVFGASNVAKLL
Sbjct: 1  MGSSSRTETSHYYSPCAACKFLRRKCIAGCVYAPYFPPEDPQKFANVHKVFGASNVAKLL 60

Query: 65 NEVLPHQRQDAVVSLAYEAEARIKDPEFG 93
          NEVLPHQRQDAVVSLAYEAEARIKDP +G
Sbjct: 61 NEVLPHQRQDAVVSLAYEAEARIKDPVYG 89

[Close]

BLAST of Cp4.1LG09g10070 vs. ExPASy TrEMBL
Match: A0A6J1GT86 (protein LATERAL ORGAN BOUNDARIES-like OS=Cucurbita moschata OX=3662 GN=LOC111456772 PE=3 SV=1)

HSP 1 Score: 183 bits (464), Expect = 7.02e-57
Identity = 86/89 (96.63%), Postives = 88/89 (98.88%), Query Frame = 0


Query: 5  MGSSSRTETSHYYSPCAACKFLRRKCIAGCVYAPYFPPEDPQKFANVHKVFGASNVAKLL 64
          MGSSSRTETSHYYSPCAAC+FLRRKCIAGCVYAPYFPPEDPQKFANVHKVFGASNVAKLL
Sbjct: 1  MGSSSRTETSHYYSPCAACRFLRRKCIAGCVYAPYFPPEDPQKFANVHKVFGASNVAKLL 60

Query: 65 NEVLPHQRQDAVVSLAYEAEARIKDPEFG 93
          NEVLPHQRQDAVVSLAYEAEARIKDP +G
Sbjct: 61 NEVLPHQRQDAVVSLAYEAEARIKDPVYG 89

[Close]

BLAST of Cp4.1LG09g10070 vs. ExPASy TrEMBL
Match: A0A6J1EDS7 (protein LATERAL ORGAN BOUNDARIES-like OS=Cucurbita moschata OX=3662 GN=LOC111431618 PE=3 SV=1)

HSP 1 Score: 166 bits (419), Expect = 4.77e-50
Identity = 77/91 (84.62%), Postives = 87/91 (95.60%), Query Frame = 0


Query: 3  IKMGSSSRTETSHYYSPCAACKFLRRKCIAGCVYAPYFPPEDPQKFANVHKVFGASNVAK 62
          ++MGS + T T+HYYSPCAACKFLRRKCIAGC++APYFPPE+PQKFANVHKVFGASNVAK
Sbjct: 1  MEMGSLA-TGTNHYYSPCAACKFLRRKCIAGCIFAPYFPPEEPQKFANVHKVFGASNVAK 60

Query: 63 LLNEVLPHQRQDAVVSLAYEAEARIKDPEFG 93
          LLNEVLPHQRQDAVVSLAY+AEARI+DP +G
Sbjct: 61 LLNEVLPHQRQDAVVSLAYQAEARIRDPVYG 90

[Close]

BLAST of Cp4.1LG09g10070 vs. ExPASy TrEMBL
Match: A0A0A0LTL0 (LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G046305 PE=3 SV=1)

HSP 1 Score: 165 bits (417), Expect = 1.19e-49
Identity = 75/85 (88.24%), Postives = 82/85 (96.47%), Query Frame = 0


Query: 9  SRTETSHYYSPCAACKFLRRKCIAGCVYAPYFPPEDPQKFANVHKVFGASNVAKLLNEVL 68
          S T ++HYYSPCAACKFLRRKC+AGCV+APYFPPE+PQKFANVHKVFGASNVAKLLNEVL
Sbjct: 3  STTTSNHYYSPCAACKFLRRKCLAGCVFAPYFPPEEPQKFANVHKVFGASNVAKLLNEVL 62

Query: 69 PHQRQDAVVSLAYEAEARIKDPEFG 93
          PHQRQDAVVSLAYEAEARI+DP +G
Sbjct: 63 PHQRQDAVVSLAYEAEARIRDPVYG 87

[Close]

BLAST of Cp4.1LG09g10070 vs. ExPASy TrEMBL
Match: A0A6J1KEE2 (protein LATERAL ORGAN BOUNDARIES-like OS=Cucurbita maxima OX=3661 GN=LOC111495065 PE=3 SV=1)

HSP 1 Score: 164 bits (416), Expect = 1.36e-49
Identity = 76/91 (83.52%), Postives = 87/91 (95.60%), Query Frame = 0


Query: 3  IKMGSSSRTETSHYYSPCAACKFLRRKCIAGCVYAPYFPPEDPQKFANVHKVFGASNVAK 62
          ++MGS + T T+HYYSPCAACKFLRRKCI+GC++APYFPPE+PQKFANVHKVFGASNVAK
Sbjct: 1  MEMGSLA-TGTNHYYSPCAACKFLRRKCISGCIFAPYFPPEEPQKFANVHKVFGASNVAK 60

Query: 63 LLNEVLPHQRQDAVVSLAYEAEARIKDPEFG 93
          LLNEVLPHQRQDAVVSLAY+AEARI+DP +G
Sbjct: 61 LLNEVLPHQRQDAVVSLAYQAEARIRDPVYG 90

[Close]

BLAST of Cp4.1LG09g10070 vs. TAIR 10
Match: AT5G63090.2 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 144.4 bits (363), Expect = 6.0e-35
Identity = 66/89 (74.16%), Postives = 77/89 (86.52%), Query Frame = 0


Query: 5  MGSSSRTETSHYYSPCAACKFLRRKCIAGCVYAPYFPPEDPQKFANVHKVFGASNVAKLL 64
          M SSS +    Y SPCAACKFLRRKC+ GC++APYFPPE+P KFANVHK+FGASNV KLL
Sbjct: 1  MASSSNS----YNSPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLL 60

Query: 65 NEVLPHQRQDAVVSLAYEAEARIKDPEFG 94
          NE+LPHQR+DAV SLAYEAEAR++DP +G
Sbjct: 61 NELLPHQREDAVNSLAYEAEARVRDPVYG 85

[Close]

BLAST of Cp4.1LG09g10070 vs. TAIR 10
Match: AT5G63090.3 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 144.4 bits (363), Expect = 6.0e-35
Identity = 66/89 (74.16%), Postives = 77/89 (86.52%), Query Frame = 0


Query: 5  MGSSSRTETSHYYSPCAACKFLRRKCIAGCVYAPYFPPEDPQKFANVHKVFGASNVAKLL 64
          M SSS +    Y SPCAACKFLRRKC+ GC++APYFPPE+P KFANVHK+FGASNV KLL
Sbjct: 1  MASSSNS----YNSPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLL 60

Query: 65 NEVLPHQRQDAVVSLAYEAEARIKDPEFG 94
          NE+LPHQR+DAV SLAYEAEAR++DP +G
Sbjct: 61 NELLPHQREDAVNSLAYEAEARVRDPVYG 85

[Close]

BLAST of Cp4.1LG09g10070 vs. TAIR 10
Match: AT5G63090.1 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 144.4 bits (363), Expect = 6.0e-35
Identity = 66/89 (74.16%), Postives = 77/89 (86.52%), Query Frame = 0


Query: 5  MGSSSRTETSHYYSPCAACKFLRRKCIAGCVYAPYFPPEDPQKFANVHKVFGASNVAKLL 64
          M SSS +    Y SPCAACKFLRRKC+ GC++APYFPPE+P KFANVHK+FGASNV KLL
Sbjct: 1  MASSSNS----YNSPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLL 60

Query: 65 NEVLPHQRQDAVVSLAYEAEARIKDPEFG 94
          NE+LPHQR+DAV SLAYEAEAR++DP +G
Sbjct: 61 NELLPHQREDAVNSLAYEAEARVRDPVYG 85

[Close]

BLAST of Cp4.1LG09g10070 vs. TAIR 10
Match: AT5G63090.4 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 144.4 bits (363), Expect = 6.0e-35
Identity = 66/89 (74.16%), Postives = 77/89 (86.52%), Query Frame = 0


Query: 5  MGSSSRTETSHYYSPCAACKFLRRKCIAGCVYAPYFPPEDPQKFANVHKVFGASNVAKLL 64
          M SSS +    Y SPCAACKFLRRKC+ GC++APYFPPE+P KFANVHK+FGASNV KLL
Sbjct: 1  MASSSNS----YNSPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLL 60

Query: 65 NEVLPHQRQDAVVSLAYEAEARIKDPEFG 94
          NE+LPHQR+DAV SLAYEAEAR++DP +G
Sbjct: 61 NELLPHQREDAVNSLAYEAEARVRDPVYG 85

[Close]

BLAST of Cp4.1LG09g10070 vs. TAIR 10
Match: AT3G27650.1 (LOB domain-containing protein 25 )

HSP 1 Score: 135.6 bits (340), Expect = 2.8e-32
Identity = 59/76 (77.63%), Postives = 70/76 (92.11%), Query Frame = 0


Query: 18  SPCAACKFLRRKCIAGCVYAPYFPPEDPQKFANVHKVFGASNVAKLLNEVLPHQRQDAVV 77
           SPCAACKFLRRKC + CV+APYFPPE+P KFANVH++FGASNV+K+L+EV PHQR+DAV 
Sbjct: 38  SPCAACKFLRRKCTSDCVFAPYFPPEEPTKFANVHRIFGASNVSKILHEVAPHQREDAVN 97

Query: 78  SLAYEAEARIKDPEFG 94
           SLAYEAEAR+KDP +G
Sbjct: 98  SLAYEAEARLKDPVYG 113

The following BLAST results are available for this feature:

BLAST of Cp4.1LG09g10070 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FML4	8.5e-34	74.16	Protein LATERAL ORGAN BOUNDARIES OS=Arabidopsis thaliana OX=3702 GN=LOB PE=1 SV=...	[more]
Q8L8Q3	4.0e-31	77.63	LOB domain-containing protein 25 OS=Arabidopsis thaliana OX=3702 GN=LBD25 PE=2 S...	[more]
O04479	6.3e-29	76.32	Protein ASYMMETRIC LEAVES 2 OS=Arabidopsis thaliana OX=3702 GN=AS2 PE=1 SV=1	[more]
Q9FKZ3	2.4e-28	76.32	LOB domain-containing protein 36 OS=Arabidopsis thaliana OX=3702 GN=LBD36 PE=2 S...	[more]
A2WXT0	4.1e-28	61.96	LOB domain-containing protein 6 OS=Oryza sativa subsp. indica OX=39946 GN=LBD6 P...	[more]

BLAST of Cp4.1LG09g10070 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023542328.1	5.07e-57	97.75	protein LATERAL ORGAN BOUNDARIES-like [Cucurbita pepo subsp. pepo]	[more]
XP_022994675.1	5.07e-57	97.75	protein LATERAL ORGAN BOUNDARIES-like [Cucurbita maxima]	[more]
XP_022954529.1	1.45e-56	96.63	protein LATERAL ORGAN BOUNDARIES-like [Cucurbita moschata] >KAG7012263.1 Protein...	[more]
KAG6573077.1	4.15e-56	96.63	Protein LATERAL ORGAN BOUNDARIES, partial [Cucurbita argyrosperma subsp. sororia...	[more]
XP_022924080.1	9.85e-50	84.62	protein LATERAL ORGAN BOUNDARIES-like [Cucurbita moschata] >KAG6584203.1 Protein...	[more]

BLAST of Cp4.1LG09g10070 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K206	2.45e-57	97.75	protein LATERAL ORGAN BOUNDARIES-like OS=Cucurbita maxima OX=3661 GN=LOC11149031...	[more]
A0A6J1GT86	7.02e-57	96.63	protein LATERAL ORGAN BOUNDARIES-like OS=Cucurbita moschata OX=3662 GN=LOC111456...	[more]
A0A6J1EDS7	4.77e-50	84.62	protein LATERAL ORGAN BOUNDARIES-like OS=Cucurbita moschata OX=3662 GN=LOC111431...	[more]
A0A0A0LTL0	1.19e-49	88.24	LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G046305 PE=3 SV...	[more]
A0A6J1KEE2	1.36e-49	83.52	protein LATERAL ORGAN BOUNDARIES-like OS=Cucurbita maxima OX=3661 GN=LOC11149506...	[more]

BLAST of Cp4.1LG09g10070 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G63090.2	6.0e-35	74.16	Lateral organ boundaries (LOB) domain family protein	[more]
AT5G63090.3	6.0e-35	74.16	Lateral organ boundaries (LOB) domain family protein	[more]
AT5G63090.1	6.0e-35	74.16	Lateral organ boundaries (LOB) domain family protein	[more]
AT5G63090.4	6.0e-35	74.16	Lateral organ boundaries (LOB) domain family protein	[more]
AT3G27650.1	2.8e-32	77.63	LOB domain-containing protein 25	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	LOB	coord: 19..93 e-value: 1.6E-31 score: 108.8
IPR004883	Lateral organ boundaries, LOB	PROSITE	PS50891	LOB	coord: 18..120 score: 21.01549
None	No IPR available	PANTHER	PTHR31301:SF91	PROTEIN LATERAL ORGAN BOUNDARIES	coord: 13..93
None	No IPR available	PANTHER	PTHR31301	LOB DOMAIN-CONTAINING PROTEIN 4-RELATED	coord: 13..93

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG09g10070.1	Cp4.1LG09g10070.1	mRNA