Cp4.1LG09g09970 (gene) Cucurbita pepo (MU‐CU‐16) v4.1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AATAAATATTTAGCATAAACACGGCGCTGAAGATCTTCGTATTACAACTGAGCTCATTCCTCTCCCTCAAGTTTCGAGCTCCGGCGAGAAAAAAATGCTGCAGTTTCCGGCGTTCATGACCCAGTACCCTTGGTCCACGAGGACTATTCCGACGTCGTTTTTACTGCCGTCTCAGTGGCCCCAACCTCAAAACGAAGAGCTGCTGCTCGCCATGGAAGAGTCTGATTTTGAAGAAAAGGTTTTTGCCATTCTCTTTTGAAAAAACCCTAATACTCTTTCCTTCTCTCCGATATTTTATTTGCATAACCTCCTGCTTGGACTTGATTGAAATCATCGGAATGTTGATTTTAGTTTAATTACGGCATGTTATGAATTTTTCGATGCGTGCCCGCTCTTGGTTGTGATTGTTTTGGAAAATGTTCGAGTATTTCTGATTTGTTCTTTGTTTTCTTCTGTCTAAATGGAATCCTCATCTTTTGTTTCCACGAATTAATTTTTGCCTCATTCCTAGAATTGAACTATTTGATGCACGTGCAAAGATCATATATCATGGAATTTCAAGTTTTCGAAGATCATATATCATGGAATTTCAAGTTCTAGAAGATCAGATATCATGGAATTTCAAGTTCTAGAAGATCATATATCATGGAATTTCAAGTTCTAGGTAGTGTAATTGATTGAAATCAGTACTTGTTCAAAATAATTGAAATCAATACAACAAAAATCACGATAAATTTTGATCATCACGGGACATCGTATTATCTTTTTAATAACCAGTGGAAAGAGACTGTTGTTGAATTAGATCTGTGTAGCTGTAAGGTTTTCACCTTTCCCAATTGCATCTGAAACAGTTTTCTCCTGGTCCTTTGCCTTGAATGCTTGCTTTCTTTGAAGTCCTTCATCAGCACTAAGTTCATTTGTGAAAGGAACCCTAGAGAAAACTTGTTGATACCCTACTCGAAGCGTTTGTTTCAGAGCACGACCTGTTACCGCCTAGAATTAGCTTGATATTGATATTTATCCTTAGCCCTGTGACTCCAATGTGTCAGTATTTTCCATGGGTGAGGCTTGTGAACCTAAGGTTACAAAGTGGTTTTTTGTCCTCGGGCCATGGCTTTGTCAGCAAGGGCTACTTCTTATATTATATCTAGATTACAAGTGCTACTTCTTATATATTATATCTAGATTACAAATCCATTCACCAAACAGTTGAAAAACTTGAGTTTCTATTATCCACTCCTTCATTCAATTCAACATACTTCACAAATTCACTTGCCTGACTCCAAACTTCATAAAATCCAAGTTTATAGAAACTTCGAGCCACGAAGTCTTAGCTGTACCTGTTCTTGTGGCGGTTGTGATTTCTTGTGTGTGTTATTCTGTATTTTTGTAACTACTTTCTCTCTTCCTTCTCTATGGAACCCTGGATTCAAATCTCTATCTTATGGGTCGATGATATGTGCCTTAACTAGTTGAGTTTAGTTGTACCTAGATTGACAAGAGGCTTCAATTCTCACTCTTTCATGAATTCAATTGGATTCCAACTTTGAGTTCGTGGTGATTCTTCTTTCGTTCAGCTGCCCTCCTCCAAAGGCCTCGAACAAAGAAGAGAAGAGGCTTCCATTTCTTTTAGTTCAACCTGGGATTCGAATCTTTGTCCTATTGATTAATGACATGTGCCTTAACTAGTTGAATTTAGTTATGCCTAGATCGACCAGAGGTTCGATTCTCACTCTTTCATGAATTCAATTGGATTCCAACTTCAAGTTCGTGATGATTCTTCTTTCATTCAACTACCCACCATAAGCCTCGAACGAAGAAGAGTGGAGACTTCCATTTCTTTTAGTTCAACCCAAGATTCAAATTTTAGTCCCATTGGTCGATAACATATGCCTTAACCAGTTGAATTCAGATGTGTCTAGATCGACGTTAGACTTTGATTCCTACTCTTTCATGAATTCAATTGGATTCAAACTTCGAGTTGGGAGGAACTAACAAACCATGAAATTCTCCTTGTCCACTGTTGCAATTTTGTAAGGTTTAGACCTCACTTTTGTATATTACTATGATGGCAGTGCAATGAAATCAGGAAGACAAACAGCAACCTGGTGGTGATTGGCAAAATGACTGCTGATAACGATAAGGAAGACATAGAGGCAGAAGATGACGATGCCGACAATGCTGAGGAATCCGAGGCTGAAGAATTTGAGCAGGAAACTGGTTAAAACTTACAACTACTCTGCATATTTGTGTCCTTTCTTGTCCTTGGAATCCTCAATTTGCTTGTGAATCTGTCACTTAGGAAAGCCAGAGTCTCTATGATCGTTAAACTTACATTCATTATAACTTCAAATTTATGTGCCTCTTGAGCTGATGATACTTTGATGAATGAATATAACCTTTTCTTTTTATTTCTGTTTTGTTTTCGTTTTCGTTTTCGAGTTCAACCATAAGTGAGGTGGTAGAAGATATGAATATCTGATCCTTTGGTTTAGAA AATAAATATTTAGCATAAACACGGCGCTGAAGATCTTCGTATTACAACTGAGCTCATTCCTCTCCCTCAAGTTTCGAGCTCCGGCGAGAAAAAAATGCTGCAGTTTCCGGCGTTCATGACCCAGTACCCTTGGTCCACGAGGACTATTCCGACGTCGTTTTTACTGCCGTCTCAGTGGCCCCAACCTCAAAACGAAGAGCTGCTGCTCGCCATGGAAGAGTCTGATTTTGAAGAAAAGTGCAATGAAATCAGGAAGACAAACAGCAACCTGGTGGTGATTGGCAAAATGACTGCTGATAACGATAAGGAAGACATAGAGGCAGAAGATGACGATGCCGACAATGCTGAGGAATCCGAGGCTGAAGAATTTGAGCAGGAAACTGGTTAAAACTTACAACTACTCTGCATATTTGTGTCCTTTCTTGTCCTTGGAATCCTCAATTTGCTTGTGAATCTGTCACTTAGGAAAGCCAGAGTCTCTATGATCGTTAAACTTACATTCATTATAACTTCAAATTTATGTGCCTCTTGAGCTGATGATACTTTGATGAATGAATATAACCTTTTCTTTTTATTTCTGTTTTGTTTTCGTTTTCGTTTTCGAGTTCAACCATAAGTGAGGTGGTAGAAGATATGAATATCTGATCCTTTGGTTTAGAA ATGCTGCAGTTTCCGGCGTTCATGACCCAGTACCCTTGGTCCACGAGGACTATTCCGACGTCGTTTTTACTGCCGTCTCAGTGGCCCCAACCTCAAAACGAAGAGCTGCTGCTCGCCATGGAAGAGTCTGATTTTGAAGAAAAGTGCAATGAAATCAGGAAGACAAACAGCAACCTGGTGGTGATTGGCAAAATGACTGCTGATAACGATAAGGAAGACATAGAGGCAGAAGATGACGATGCCGACAATGCTGAGGAATCCGAGGCTGAAGAATTTGAGCAGGAAACTGGTTAA MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMTADNDKEDIEAEDDDADNAEESEAEEFEQETG Homology
BLAST of Cp4.1LG09g09970 vs. NCBI nr
Match: XP_008438807.1 (PREDICTED: uncharacterized protein LOC103483797 [Cucumis melo] >XP_022954520.1 uncharacterized protein LOC111456762 [Cucurbita moschata] >XP_022994682.1 uncharacterized protein LOC111490324 [Cucurbita maxima] >XP_023541351.1 uncharacterized protein LOC111801554 [Cucurbita pepo subsp. pepo] >KAA0055258.1 transcription termination factor 4 [Cucumis melo var. makuwa] >KAG6573081.1 hypothetical protein SDJN03_26968, partial [Cucurbita argyrosperma subsp. sororia] >KAG7012267.1 hypothetical protein SDJN02_25019 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 185 bits (469), Expect = 1.03e-58 Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0
BLAST of Cp4.1LG09g09970 vs. NCBI nr
Match: XP_038894516.1 (uncharacterized protein LOC120083062 [Benincasa hispida]) HSP 1 Score: 180 bits (457), Expect = 6.98e-57 Identity = 95/97 (97.94%), Postives = 95/97 (97.94%), Query Frame = 0
BLAST of Cp4.1LG09g09970 vs. NCBI nr
Match: XP_004152491.1 (uncharacterized protein LOC101206898 [Cucumis sativus] >KGN64341.1 hypothetical protein Csa_014279 [Cucumis sativus]) HSP 1 Score: 180 bits (457), Expect = 6.98e-57 Identity = 94/97 (96.91%), Postives = 96/97 (98.97%), Query Frame = 0
BLAST of Cp4.1LG09g09970 vs. NCBI nr
Match: XP_022137094.1 (uncharacterized protein LOC111008654 [Momordica charantia]) HSP 1 Score: 179 bits (455), Expect = 1.41e-56 Identity = 94/96 (97.92%), Postives = 95/96 (98.96%), Query Frame = 0
BLAST of Cp4.1LG09g09970 vs. NCBI nr
Match: XP_018813880.1 (uncharacterized protein LOC108985877 [Juglans regia] >KAF5476731.1 hypothetical protein F2P56_003439 [Juglans regia]) HSP 1 Score: 164 bits (415), Expect = 1.90e-50 Identity = 88/98 (89.80%), Postives = 91/98 (92.86%), Query Frame = 0
BLAST of Cp4.1LG09g09970 vs. ExPASy TrEMBL
Match: A0A6J1JWJ6 (uncharacterized protein LOC111490324 OS=Cucurbita maxima OX=3661 GN=LOC111490324 PE=3 SV=1) HSP 1 Score: 185 bits (469), Expect = 4.99e-59 Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0
BLAST of Cp4.1LG09g09970 vs. ExPASy TrEMBL
Match: A0A5A7UJS1 (Transcription termination factor 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold80G001000 PE=3 SV=1) HSP 1 Score: 185 bits (469), Expect = 4.99e-59 Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0
BLAST of Cp4.1LG09g09970 vs. ExPASy TrEMBL
Match: A0A6J1GSM6 (uncharacterized protein LOC111456762 OS=Cucurbita moschata OX=3662 GN=LOC111456762 PE=3 SV=1) HSP 1 Score: 185 bits (469), Expect = 4.99e-59 Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0
BLAST of Cp4.1LG09g09970 vs. ExPASy TrEMBL
Match: A0A1S3AXA5 (uncharacterized protein LOC103483797 OS=Cucumis melo OX=3656 GN=LOC103483797 PE=3 SV=1) HSP 1 Score: 185 bits (469), Expect = 4.99e-59 Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0
BLAST of Cp4.1LG09g09970 vs. ExPASy TrEMBL
Match: A0A0A0LWF0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G046850 PE=3 SV=1) HSP 1 Score: 180 bits (457), Expect = 3.38e-57 Identity = 94/97 (96.91%), Postives = 96/97 (98.97%), Query Frame = 0
BLAST of Cp4.1LG09g09970 vs. TAIR 10
Match: AT5G63135.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 132.1 bits (331), Expect = 2.4e-31 Identity = 72/99 (72.73%), Postives = 83/99 (83.84%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|