Cp4.1LG09g09970 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG09g09970
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionTranscription termination factor 4
LocationCp4.1LG09: 8904915 .. 8907411 (+)
RNA-Seq ExpressionCp4.1LG09g09970
SyntenyCp4.1LG09g09970
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AATAAATATTTAGCATAAACACGGCGCTGAAGATCTTCGTATTACAACTGAGCTCATTCCTCTCCCTCAAGTTTCGAGCTCCGGCGAGAAAAAAATGCTGCAGTTTCCGGCGTTCATGACCCAGTACCCTTGGTCCACGAGGACTATTCCGACGTCGTTTTTACTGCCGTCTCAGTGGCCCCAACCTCAAAACGAAGAGCTGCTGCTCGCCATGGAAGAGTCTGATTTTGAAGAAAAGGTTTTTGCCATTCTCTTTTGAAAAAACCCTAATACTCTTTCCTTCTCTCCGATATTTTATTTGCATAACCTCCTGCTTGGACTTGATTGAAATCATCGGAATGTTGATTTTAGTTTAATTACGGCATGTTATGAATTTTTCGATGCGTGCCCGCTCTTGGTTGTGATTGTTTTGGAAAATGTTCGAGTATTTCTGATTTGTTCTTTGTTTTCTTCTGTCTAAATGGAATCCTCATCTTTTGTTTCCACGAATTAATTTTTGCCTCATTCCTAGAATTGAACTATTTGATGCACGTGCAAAGATCATATATCATGGAATTTCAAGTTTTCGAAGATCATATATCATGGAATTTCAAGTTCTAGAAGATCAGATATCATGGAATTTCAAGTTCTAGAAGATCATATATCATGGAATTTCAAGTTCTAGGTAGTGTAATTGATTGAAATCAGTACTTGTTCAAAATAATTGAAATCAATACAACAAAAATCACGATAAATTTTGATCATCACGGGACATCGTATTATCTTTTTAATAACCAGTGGAAAGAGACTGTTGTTGAATTAGATCTGTGTAGCTGTAAGGTTTTCACCTTTCCCAATTGCATCTGAAACAGTTTTCTCCTGGTCCTTTGCCTTGAATGCTTGCTTTCTTTGAAGTCCTTCATCAGCACTAAGTTCATTTGTGAAAGGAACCCTAGAGAAAACTTGTTGATACCCTACTCGAAGCGTTTGTTTCAGAGCACGACCTGTTACCGCCTAGAATTAGCTTGATATTGATATTTATCCTTAGCCCTGTGACTCCAATGTGTCAGTATTTTCCATGGGTGAGGCTTGTGAACCTAAGGTTACAAAGTGGTTTTTTGTCCTCGGGCCATGGCTTTGTCAGCAAGGGCTACTTCTTATATTATATCTAGATTACAAGTGCTACTTCTTATATATTATATCTAGATTACAAATCCATTCACCAAACAGTTGAAAAACTTGAGTTTCTATTATCCACTCCTTCATTCAATTCAACATACTTCACAAATTCACTTGCCTGACTCCAAACTTCATAAAATCCAAGTTTATAGAAACTTCGAGCCACGAAGTCTTAGCTGTACCTGTTCTTGTGGCGGTTGTGATTTCTTGTGTGTGTTATTCTGTATTTTTGTAACTACTTTCTCTCTTCCTTCTCTATGGAACCCTGGATTCAAATCTCTATCTTATGGGTCGATGATATGTGCCTTAACTAGTTGAGTTTAGTTGTACCTAGATTGACAAGAGGCTTCAATTCTCACTCTTTCATGAATTCAATTGGATTCCAACTTTGAGTTCGTGGTGATTCTTCTTTCGTTCAGCTGCCCTCCTCCAAAGGCCTCGAACAAAGAAGAGAAGAGGCTTCCATTTCTTTTAGTTCAACCTGGGATTCGAATCTTTGTCCTATTGATTAATGACATGTGCCTTAACTAGTTGAATTTAGTTATGCCTAGATCGACCAGAGGTTCGATTCTCACTCTTTCATGAATTCAATTGGATTCCAACTTCAAGTTCGTGATGATTCTTCTTTCATTCAACTACCCACCATAAGCCTCGAACGAAGAAGAGTGGAGACTTCCATTTCTTTTAGTTCAACCCAAGATTCAAATTTTAGTCCCATTGGTCGATAACATATGCCTTAACCAGTTGAATTCAGATGTGTCTAGATCGACGTTAGACTTTGATTCCTACTCTTTCATGAATTCAATTGGATTCAAACTTCGAGTTGGGAGGAACTAACAAACCATGAAATTCTCCTTGTCCACTGTTGCAATTTTGTAAGGTTTAGACCTCACTTTTGTATATTACTATGATGGCAGTGCAATGAAATCAGGAAGACAAACAGCAACCTGGTGGTGATTGGCAAAATGACTGCTGATAACGATAAGGAAGACATAGAGGCAGAAGATGACGATGCCGACAATGCTGAGGAATCCGAGGCTGAAGAATTTGAGCAGGAAACTGGTTAAAACTTACAACTACTCTGCATATTTGTGTCCTTTCTTGTCCTTGGAATCCTCAATTTGCTTGTGAATCTGTCACTTAGGAAAGCCAGAGTCTCTATGATCGTTAAACTTACATTCATTATAACTTCAAATTTATGTGCCTCTTGAGCTGATGATACTTTGATGAATGAATATAACCTTTTCTTTTTATTTCTGTTTTGTTTTCGTTTTCGTTTTCGAGTTCAACCATAAGTGAGGTGGTAGAAGATATGAATATCTGATCCTTTGGTTTAGAA

mRNA sequence

AATAAATATTTAGCATAAACACGGCGCTGAAGATCTTCGTATTACAACTGAGCTCATTCCTCTCCCTCAAGTTTCGAGCTCCGGCGAGAAAAAAATGCTGCAGTTTCCGGCGTTCATGACCCAGTACCCTTGGTCCACGAGGACTATTCCGACGTCGTTTTTACTGCCGTCTCAGTGGCCCCAACCTCAAAACGAAGAGCTGCTGCTCGCCATGGAAGAGTCTGATTTTGAAGAAAAGTGCAATGAAATCAGGAAGACAAACAGCAACCTGGTGGTGATTGGCAAAATGACTGCTGATAACGATAAGGAAGACATAGAGGCAGAAGATGACGATGCCGACAATGCTGAGGAATCCGAGGCTGAAGAATTTGAGCAGGAAACTGGTTAAAACTTACAACTACTCTGCATATTTGTGTCCTTTCTTGTCCTTGGAATCCTCAATTTGCTTGTGAATCTGTCACTTAGGAAAGCCAGAGTCTCTATGATCGTTAAACTTACATTCATTATAACTTCAAATTTATGTGCCTCTTGAGCTGATGATACTTTGATGAATGAATATAACCTTTTCTTTTTATTTCTGTTTTGTTTTCGTTTTCGTTTTCGAGTTCAACCATAAGTGAGGTGGTAGAAGATATGAATATCTGATCCTTTGGTTTAGAA

Coding sequence (CDS)

ATGCTGCAGTTTCCGGCGTTCATGACCCAGTACCCTTGGTCCACGAGGACTATTCCGACGTCGTTTTTACTGCCGTCTCAGTGGCCCCAACCTCAAAACGAAGAGCTGCTGCTCGCCATGGAAGAGTCTGATTTTGAAGAAAAGTGCAATGAAATCAGGAAGACAAACAGCAACCTGGTGGTGATTGGCAAAATGACTGCTGATAACGATAAGGAAGACATAGAGGCAGAAGATGACGATGCCGACAATGCTGAGGAATCCGAGGCTGAAGAATTTGAGCAGGAAACTGGTTAA

Protein sequence

MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMTADNDKEDIEAEDDDADNAEESEAEEFEQETG
Homology
BLAST of Cp4.1LG09g09970 vs. NCBI nr
Match: XP_008438807.1 (PREDICTED: uncharacterized protein LOC103483797 [Cucumis melo] >XP_022954520.1 uncharacterized protein LOC111456762 [Cucurbita moschata] >XP_022994682.1 uncharacterized protein LOC111490324 [Cucurbita maxima] >XP_023541351.1 uncharacterized protein LOC111801554 [Cucurbita pepo subsp. pepo] >KAA0055258.1 transcription termination factor 4 [Cucumis melo var. makuwa] >KAG6573081.1 hypothetical protein SDJN03_26968, partial [Cucurbita argyrosperma subsp. sororia] >KAG7012267.1 hypothetical protein SDJN02_25019 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 185 bits (469), Expect = 1.03e-58
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0

Query: 1  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLV 60
          MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLV
Sbjct: 1  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLV 60

Query: 61 VIGKMTADNDKEDIEAEDDDADNAEESEAEEFEQETG 97
          VIGKMTADNDKEDIEAEDDDADNAEESEAEEFEQETG
Sbjct: 61 VIGKMTADNDKEDIEAEDDDADNAEESEAEEFEQETG 97

BLAST of Cp4.1LG09g09970 vs. NCBI nr
Match: XP_038894516.1 (uncharacterized protein LOC120083062 [Benincasa hispida])

HSP 1 Score: 180 bits (457), Expect = 6.98e-57
Identity = 95/97 (97.94%), Postives = 95/97 (97.94%), Query Frame = 0

Query: 1  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLV 60
          MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSN V
Sbjct: 1  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNQV 60

Query: 61 VIGKMTADNDKEDIEAEDDDADNAEESEAEEFEQETG 97
          VIGKM ADNDKEDIEAEDDDADNAEESEAEEFEQETG
Sbjct: 61 VIGKMIADNDKEDIEAEDDDADNAEESEAEEFEQETG 97

BLAST of Cp4.1LG09g09970 vs. NCBI nr
Match: XP_004152491.1 (uncharacterized protein LOC101206898 [Cucumis sativus] >KGN64341.1 hypothetical protein Csa_014279 [Cucumis sativus])

HSP 1 Score: 180 bits (457), Expect = 6.98e-57
Identity = 94/97 (96.91%), Postives = 96/97 (98.97%), Query Frame = 0

Query: 1  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLV 60
          MLQFPAFMTQYPWSTR IPTSFLLPSQWPQPQNEELLLAMEE+DFEEKCNEIRKTNSNLV
Sbjct: 1  MLQFPAFMTQYPWSTRKIPTSFLLPSQWPQPQNEELLLAMEEADFEEKCNEIRKTNSNLV 60

Query: 61 VIGKMTADNDKEDIEAEDDDADNAEESEAEEFEQETG 97
          VIGKMTADNDKEDIEAEDDDADNA+ESEAEEFEQETG
Sbjct: 61 VIGKMTADNDKEDIEAEDDDADNADESEAEEFEQETG 97

BLAST of Cp4.1LG09g09970 vs. NCBI nr
Match: XP_022137094.1 (uncharacterized protein LOC111008654 [Momordica charantia])

HSP 1 Score: 179 bits (455), Expect = 1.41e-56
Identity = 94/96 (97.92%), Postives = 95/96 (98.96%), Query Frame = 0

Query: 1  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLV 60
          MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLV
Sbjct: 1  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLV 60

Query: 61 VIGKMTADNDKEDIEAEDDDADNAEESEAEEFEQET 96
          VIGKM+ADNDKEDIEAEDDDADN EESEAEEFEQET
Sbjct: 61 VIGKMSADNDKEDIEAEDDDADNGEESEAEEFEQET 96

BLAST of Cp4.1LG09g09970 vs. NCBI nr
Match: XP_018813880.1 (uncharacterized protein LOC108985877 [Juglans regia] >KAF5476731.1 hypothetical protein F2P56_003439 [Juglans regia])

HSP 1 Score: 164 bits (415), Expect = 1.90e-50
Identity = 88/98 (89.80%), Postives = 91/98 (92.86%), Query Frame = 0

Query: 1  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLV 60
          MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQP +EELLLAMEESDFEEKCNEIRKTNSNLV
Sbjct: 1  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPHSEELLLAMEESDFEEKCNEIRKTNSNLV 60

Query: 61 VIGKMTADNDKEDIE--AEDDDADNAEESEAEEFEQET 96
          VIGK T DNDKED +  A+DDDADNAEESE EEFEQET
Sbjct: 61 VIGKTTVDNDKEDYDNDADDDDADNAEESEGEEFEQET 98

BLAST of Cp4.1LG09g09970 vs. ExPASy TrEMBL
Match: A0A6J1JWJ6 (uncharacterized protein LOC111490324 OS=Cucurbita maxima OX=3661 GN=LOC111490324 PE=3 SV=1)

HSP 1 Score: 185 bits (469), Expect = 4.99e-59
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0

Query: 1  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLV 60
          MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLV
Sbjct: 1  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLV 60

Query: 61 VIGKMTADNDKEDIEAEDDDADNAEESEAEEFEQETG 97
          VIGKMTADNDKEDIEAEDDDADNAEESEAEEFEQETG
Sbjct: 61 VIGKMTADNDKEDIEAEDDDADNAEESEAEEFEQETG 97

BLAST of Cp4.1LG09g09970 vs. ExPASy TrEMBL
Match: A0A5A7UJS1 (Transcription termination factor 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold80G001000 PE=3 SV=1)

HSP 1 Score: 185 bits (469), Expect = 4.99e-59
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0

Query: 1  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLV 60
          MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLV
Sbjct: 1  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLV 60

Query: 61 VIGKMTADNDKEDIEAEDDDADNAEESEAEEFEQETG 97
          VIGKMTADNDKEDIEAEDDDADNAEESEAEEFEQETG
Sbjct: 61 VIGKMTADNDKEDIEAEDDDADNAEESEAEEFEQETG 97

BLAST of Cp4.1LG09g09970 vs. ExPASy TrEMBL
Match: A0A6J1GSM6 (uncharacterized protein LOC111456762 OS=Cucurbita moschata OX=3662 GN=LOC111456762 PE=3 SV=1)

HSP 1 Score: 185 bits (469), Expect = 4.99e-59
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0

Query: 1  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLV 60
          MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLV
Sbjct: 1  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLV 60

Query: 61 VIGKMTADNDKEDIEAEDDDADNAEESEAEEFEQETG 97
          VIGKMTADNDKEDIEAEDDDADNAEESEAEEFEQETG
Sbjct: 61 VIGKMTADNDKEDIEAEDDDADNAEESEAEEFEQETG 97

BLAST of Cp4.1LG09g09970 vs. ExPASy TrEMBL
Match: A0A1S3AXA5 (uncharacterized protein LOC103483797 OS=Cucumis melo OX=3656 GN=LOC103483797 PE=3 SV=1)

HSP 1 Score: 185 bits (469), Expect = 4.99e-59
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0

Query: 1  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLV 60
          MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLV
Sbjct: 1  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLV 60

Query: 61 VIGKMTADNDKEDIEAEDDDADNAEESEAEEFEQETG 97
          VIGKMTADNDKEDIEAEDDDADNAEESEAEEFEQETG
Sbjct: 61 VIGKMTADNDKEDIEAEDDDADNAEESEAEEFEQETG 97

BLAST of Cp4.1LG09g09970 vs. ExPASy TrEMBL
Match: A0A0A0LWF0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G046850 PE=3 SV=1)

HSP 1 Score: 180 bits (457), Expect = 3.38e-57
Identity = 94/97 (96.91%), Postives = 96/97 (98.97%), Query Frame = 0

Query: 1  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLV 60
          MLQFPAFMTQYPWSTR IPTSFLLPSQWPQPQNEELLLAMEE+DFEEKCNEIRKTNSNLV
Sbjct: 1  MLQFPAFMTQYPWSTRKIPTSFLLPSQWPQPQNEELLLAMEEADFEEKCNEIRKTNSNLV 60

Query: 61 VIGKMTADNDKEDIEAEDDDADNAEESEAEEFEQETG 97
          VIGKMTADNDKEDIEAEDDDADNA+ESEAEEFEQETG
Sbjct: 61 VIGKMTADNDKEDIEAEDDDADNADESEAEEFEQETG 97

BLAST of Cp4.1LG09g09970 vs. TAIR 10
Match: AT5G63135.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 132.1 bits (331), Expect = 2.4e-31
Identity = 72/99 (72.73%), Postives = 83/99 (83.84%), Query Frame = 0

Query: 1  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLV 60
          MLQFP  MTQ+P ST+TIP S+LLP QWPQPQNEE+LLAMEE++FEEKCNEIRK +  L 
Sbjct: 1  MLQFPTLMTQFPSSTKTIPASYLLPLQWPQPQNEEILLAMEEAEFEEKCNEIRKMSPALP 60

Query: 61 VIGKMTADNDKE--DIEAEDDDADNAEESEAEEFEQETG 98
          VIGK   +N++E  D EAEDDDADNAEES+ EEFEQETG
Sbjct: 61 VIGKPVVNNEQEEDDNEAEDDDADNAEESDGEEFEQETG 99

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_008438807.11.03e-58100.00PREDICTED: uncharacterized protein LOC103483797 [Cucumis melo] >XP_022954520.1 u... [more]
XP_038894516.16.98e-5797.94uncharacterized protein LOC120083062 [Benincasa hispida][more]
XP_004152491.16.98e-5796.91uncharacterized protein LOC101206898 [Cucumis sativus] >KGN64341.1 hypothetical ... [more]
XP_022137094.11.41e-5697.92uncharacterized protein LOC111008654 [Momordica charantia][more]
XP_018813880.11.90e-5089.80uncharacterized protein LOC108985877 [Juglans regia] >KAF5476731.1 hypothetical ... [more]
Match NameE-valueIdentityDescription
A0A6J1JWJ64.99e-59100.00uncharacterized protein LOC111490324 OS=Cucurbita maxima OX=3661 GN=LOC111490324... [more]
A0A5A7UJS14.99e-59100.00Transcription termination factor 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C... [more]
A0A6J1GSM64.99e-59100.00uncharacterized protein LOC111456762 OS=Cucurbita moschata OX=3662 GN=LOC1114567... [more]
A0A1S3AXA54.99e-59100.00uncharacterized protein LOC103483797 OS=Cucumis melo OX=3656 GN=LOC103483797 PE=... [more]
A0A0A0LWF03.38e-5796.91Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G046850 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
AT5G63135.12.4e-3172.73unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 67..87
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 68..97
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 72..97
NoneNo IPR availablePANTHERPTHR37771OS02G0593400 PROTEINcoord: 1..97
NoneNo IPR availablePANTHERPTHR37771:SF2OS02G0593400 PROTEINcoord: 1..97
IPR026182Anaphase-promoting complex subunit 15PFAMPF15243ANAPC15coord: 9..95
e-value: 1.3E-18
score: 67.1

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG09g09970.1Cp4.1LG09g09970.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0090266 regulation of mitotic cell cycle spindle assembly checkpoint
cellular_component GO:0005680 anaphase-promoting complex