Cp4.1LG09g09890 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG09g09890
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionWD repeat-containing protein 74-like
LocationCp4.1LG09: 8672001 .. 8672440 (-)
RNA-Seq ExpressionCp4.1LG09g09890
SyntenyCp4.1LG09g09890
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GCTATACTGACCTATTACTGGGTTGATGATGAAATGTCTGTTGATCGGCCGATTATGTCTTTCATTTCTTTCATCTATGGTCAATTCAAATTCTTCATCATTTTTAGTCACCAAATTACTTCCTTTTATTTTTTATTGCAGTTACTAGCTGTTGCTCGAAAAAATGGACTGGTAAGTTGCTTGTTCAGACTTCTAGTGTAGTGAATCCTGCTCACATTGATTGAACTTAAAAATTTAAATATACTAATGCTCTTTTTGTAAAATCATGTTCCTGCCGTATACTCCAGATTGAAGTTCTTAATCCATTGAATGGCAATCTTCATGTTGCAATTTCGGACAATACTGATACTTCTCCACCAAAAGATGATGCTATTATTGGAATGCATTTATTTTCAAAAGATGAATCGGCGTTGGCGTCTAGGTTATGGATCAATTTATAA

mRNA sequence

GCTATACTGACCTATTACTGGGTTGATGATGAAATGTCTGTTGATCGGCCGATTATGTCTTTCATTTCTTTCATCTATGGTCAATTCAAATTCTTCATCATTTTTAGTCACCAAATTACTTCCTTTTATTTTTTATTGCAGTTACTAGCTGTTGCTCGAAAAAATGGACTGATTGAAGTTCTTAATCCATTGAATGGCAATCTTCATGTTGCAATTTCGGACAATACTGATACTTCTCCACCAAAAGATGATGCTATTATTGGAATGCATTTATTTTCAAAAGATGAATCGGCGTTGGCGTCTAGGTTATGGATCAATTTATAA

Coding sequence (CDS)

GCTATACTGACCTATTACTGGGTTGATGATGAAATGTCTGTTGATCGGCCGATTATGTCTTTCATTTCTTTCATCTATGGTCAATTCAAATTCTTCATCATTTTTAGTCACCAAATTACTTCCTTTTATTTTTTATTGCAGTTACTAGCTGTTGCTCGAAAAAATGGACTGATTGAAGTTCTTAATCCATTGAATGGCAATCTTCATGTTGCAATTTCGGACAATACTGATACTTCTCCACCAAAAGATGATGCTATTATTGGAATGCATTTATTTTCAAAAGATGAATCGGCGTTGGCGTCTAGGTTATGGATCAATTTATAA

Protein sequence

AILTYYWVDDEMSVDRPIMSFISFIYGQFKFFIIFSHQITSFYFLLQLLAVARKNGLIEVLNPLNGNLHVAISDNTDTSPPKDDAIIGMHLFSKDESALASRLWINL
Homology
[Close]
BLAST of Cp4.1LG09g09890 vs. NCBI nr
Match: XP_023542797.1 (uncharacterized protein LOC111802600 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 111 bits (277), Expect = 6.57e-29
Identity = 56/59 (94.92%), Postives = 57/59 (96.61%), Query Frame = 0 

Query: 48  LLAVARKNGLIEVLNPLNGNLHVAISDNTDTSPPKDDAIIGMHLFSKDESALASRLWIN 106
           LLAVARKNGLIEVLNPLNGNLHVAISDNTDTSPPKDDAIIGMHLFSKDESALAS L I+
Sbjct: 67  LLAVARKNGLIEVLNPLNGNLHVAISDNTDTSPPKDDAIIGMHLFSKDESALASSLIIH 125

[Close]
BLAST of Cp4.1LG09g09890 vs. NCBI nr
Match: XP_023542679.1 (WD repeat-containing protein 74-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 110 bits (276), Expect = 3.93e-26
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0 

Query: 48  LLAVARKNGLIEVLNPLNGNLHVAISDNTDTSPPKDDAIIGMHLFSKDESALASR 102
           LLAVARKNGLIEVLNPLNGNLHVAISDNTDTSPPKDDAIIGMHLFSKDESALASR
Sbjct: 67  LLAVARKNGLIEVLNPLNGNLHVAISDNTDTSPPKDDAIIGMHLFSKDESALASR 121

[Close]
BLAST of Cp4.1LG09g09890 vs. NCBI nr
Match: XP_023542678.1 (WD repeat-containing protein 74-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 110 bits (276), Expect = 3.97e-26
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0 

Query: 48  LLAVARKNGLIEVLNPLNGNLHVAISDNTDTSPPKDDAIIGMHLFSKDESALASR 102
           LLAVARKNGLIEVLNPLNGNLHVAISDNTDTSPPKDDAIIGMHLFSKDESALASR
Sbjct: 67  LLAVARKNGLIEVLNPLNGNLHVAISDNTDTSPPKDDAIIGMHLFSKDESALASR 121

[Close]
BLAST of Cp4.1LG09g09890 vs. NCBI nr
Match: XP_022994307.1 (WD repeat-containing protein 74 isoform X2 [Cucurbita maxima])

HSP 1 Score: 107 bits (267), Expect = 7.58e-25
Identity = 53/55 (96.36%), Postives = 54/55 (98.18%), Query Frame = 0 

Query: 48  LLAVARKNGLIEVLNPLNGNLHVAISDNTDTSPPKDDAIIGMHLFSKDESALASR 102
           LLAVARKNGLIEVLNPLNGNLHVAISDNTDTSPPKDDAIIGMHLF+KDE ALASR
Sbjct: 67  LLAVARKNGLIEVLNPLNGNLHVAISDNTDTSPPKDDAIIGMHLFAKDELALASR 121

[Close]
BLAST of Cp4.1LG09g09890 vs. NCBI nr
Match: XP_022994306.1 (WD repeat-containing protein 74 isoform X1 [Cucurbita maxima])

HSP 1 Score: 107 bits (267), Expect = 7.65e-25
Identity = 53/55 (96.36%), Postives = 54/55 (98.18%), Query Frame = 0 

Query: 48  LLAVARKNGLIEVLNPLNGNLHVAISDNTDTSPPKDDAIIGMHLFSKDESALASR 102
           LLAVARKNGLIEVLNPLNGNLHVAISDNTDTSPPKDDAIIGMHLF+KDE ALASR
Sbjct: 67  LLAVARKNGLIEVLNPLNGNLHVAISDNTDTSPPKDDAIIGMHLFAKDELALASR 121

[Close]
BLAST of Cp4.1LG09g09890 vs. ExPASy TrEMBL
Match: A0A6J1JVF3 (WD repeat-containing protein 74 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111490075 PE=4 SV=1)

HSP 1 Score: 107 bits (267), Expect = 3.67e-25
Identity = 53/55 (96.36%), Postives = 54/55 (98.18%), Query Frame = 0 

Query: 48  LLAVARKNGLIEVLNPLNGNLHVAISDNTDTSPPKDDAIIGMHLFSKDESALASR 102
           LLAVARKNGLIEVLNPLNGNLHVAISDNTDTSPPKDDAIIGMHLF+KDE ALASR
Sbjct: 67  LLAVARKNGLIEVLNPLNGNLHVAISDNTDTSPPKDDAIIGMHLFAKDELALASR 121

[Close]
BLAST of Cp4.1LG09g09890 vs. ExPASy TrEMBL
Match: A0A6J1JYR5 (WD repeat-containing protein 74 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111490075 PE=4 SV=1)

HSP 1 Score: 107 bits (267), Expect = 3.70e-25
Identity = 53/55 (96.36%), Postives = 54/55 (98.18%), Query Frame = 0 

Query: 48  LLAVARKNGLIEVLNPLNGNLHVAISDNTDTSPPKDDAIIGMHLFSKDESALASR 102
           LLAVARKNGLIEVLNPLNGNLHVAISDNTDTSPPKDDAIIGMHLF+KDE ALASR
Sbjct: 67  LLAVARKNGLIEVLNPLNGNLHVAISDNTDTSPPKDDAIIGMHLFAKDELALASR 121

[Close]
BLAST of Cp4.1LG09g09890 vs. ExPASy TrEMBL
Match: A0A6J1GT09 (WD repeat-containing protein 74-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111457261 PE=4 SV=1)

HSP 1 Score: 105 bits (262), Expect = 1.89e-24
Identity = 52/55 (94.55%), Postives = 53/55 (96.36%), Query Frame = 0 

Query: 48  LLAVARKNGLIEVLNPLNGNLHVAISDNTDTSPPKDDAIIGMHLFSKDESALASR 102
           LLAVARKNGLIEVLNPLNGNLHVAISDNTD+SPPKDDAIIGMHLF KDE ALASR
Sbjct: 67  LLAVARKNGLIEVLNPLNGNLHVAISDNTDSSPPKDDAIIGMHLFEKDELALASR 121

[Close]
BLAST of Cp4.1LG09g09890 vs. ExPASy TrEMBL
Match: A0A6J1GUM0 (WD repeat-containing protein 74-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111457261 PE=4 SV=1)

HSP 1 Score: 105 bits (262), Expect = 1.91e-24
Identity = 52/55 (94.55%), Postives = 53/55 (96.36%), Query Frame = 0 

Query: 48  LLAVARKNGLIEVLNPLNGNLHVAISDNTDTSPPKDDAIIGMHLFSKDESALASR 102
           LLAVARKNGLIEVLNPLNGNLHVAISDNTD+SPPKDDAIIGMHLF KDE ALASR
Sbjct: 67  LLAVARKNGLIEVLNPLNGNLHVAISDNTDSSPPKDDAIIGMHLFEKDELALASR 121

[Close]
BLAST of Cp4.1LG09g09890 vs. ExPASy TrEMBL
Match: A0A6J1EA63 (WD repeat-containing protein 74-like OS=Cucurbita moschata OX=3662 GN=LOC111431283 PE=4 SV=1)

HSP 1 Score: 100 bits (248), Expect = 1.87e-22
Identity = 51/56 (91.07%), Postives = 53/56 (94.64%), Query Frame = 0 

Query: 48  LLAVARKNGLIEVLNPLNGNLHVAISDNTDTSPP-KDDAIIGMHLFSKDESALASR 102
           LLAVARKNGLIEVLNPLNGNLHVAISDNTDTSPP KD+AI+GMHL SKDES LASR
Sbjct: 67  LLAVARKNGLIEVLNPLNGNLHVAISDNTDTSPPPKDEAIVGMHLLSKDESELASR 122

[Close]
BLAST of Cp4.1LG09g09890 vs. TAIR 10
Match: AT1G29320.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 48.5 bits (114), Expect = 3.8e-06
Identity = 25/48 (52.08%), Postives = 33/48 (68.75%), Query Frame = 0 

Query: 48  LLAVARKNGLIEVLNPLNGNLHVAIS-DNTDTSPPKDDAIIGMHLFSK 95
           LLAVARK+G +EV+NP NG+LH + S    D   P+D+ I  +HLF K
Sbjct: 67  LLAVARKDGNVEVINPCNGDLHFSYSVFGDDGCSPEDNEISALHLFRK 114

The following BLAST results are available for this feature:
BLAST of Cp4.1LG09g09890 vs.
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG09g09890 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023542797.16.57e-2994.92uncharacterized protein LOC111802600 [Cucurbita pepo subsp. pepo][more]
XP_023542679.13.93e-26100.00WD repeat-containing protein 74-like isoform X2 [Cucurbita pepo subsp. pepo][more]
XP_023542678.13.97e-26100.00WD repeat-containing protein 74-like isoform X1 [Cucurbita pepo subsp. pepo][more]
XP_022994307.17.58e-2596.36WD repeat-containing protein 74 isoform X2 [Cucurbita maxima][more]
XP_022994306.17.65e-2596.36WD repeat-containing protein 74 isoform X1 [Cucurbita maxima][more]
BLAST of Cp4.1LG09g09890 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1JVF33.67e-2596.36WD repeat-containing protein 74 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111... [more]
A0A6J1JYR53.70e-2596.36WD repeat-containing protein 74 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111... [more]
A0A6J1GT091.89e-2494.55WD repeat-containing protein 74-like isoform X2 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1GUM01.91e-2494.55WD repeat-containing protein 74-like isoform X1 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1EA631.87e-2291.07WD repeat-containing protein 74-like OS=Cucurbita moschata OX=3662 GN=LOC1114312... [more]
BLAST of Cp4.1LG09g09890 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G29320.13.8e-0652.08Transducin/WD40 repeat-like superfamily protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG09g09890.1Cp4.1LG09g09890.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042273 ribosomal large subunit biogenesis
cellular_component GO:0005730 nucleolus
cellular_component GO:0030687 preribosome, large subunit precursor