Cp4.1LG09g09590 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG09g09590
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	protein ROOT INITIATION DEFECTIVE 3-like
Location	Cp4.1LG09: 8632537 .. 8636689 (+)
RNA-Seq Expression	Cp4.1LG09g09590
Synteny	Cp4.1LG09g09590

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGGGCGGCGGCGGTGGCGGTGGCGGCAAATTGACTGCACGGAGTTCACTAGCGCCGAGAGGATTCTGGCTCGTTGATCCCTGAAGCCAAACTTGGAAGGTGAACCGAAAGTTCAAATCGTTTCAACTGATTTTGTCTCTTTCAATTGACAGGCGTCATTGAATTGAATGCACGCGCATAAGCAGTCGGGCCTTCGCATGCATTACCTCCATAGCCTCCATTAATGGGAGAATTTTTGCTTTCATCTCTTCCAACGTCAAAAAATGAGCAATGTTGGCGAAACAATGGCGTTGGCTGTGTGCAGCGACAAGAACATGGGATCAGGGATTACGATTTGGGATCCAAAAACAGGCGAAACTCTCCTTCATATTCCGACTTGCGCTTCGCCTTCTTATGGTTTAATTTCTTTGAGAAACGAGTTCCTTGTTGCTTCTCAGACTCGTAAGGAAGGCTCCGTTGGTGGTGGATCCATGTTCGTTTGGTCCCTGAGCAAGGTATTGAACTATCGATTAATCTGCTTTTGAATACACATTTTCTTTCAGATGCTATCATTGTTTGTATAATCATAGACGATTCGATTCTTTACAAACACGCTTGAGTAATCTTGAACTCGATTTATATTAAGAACTCACTTGTTCGATTTTAGGGGTGATTTACAATATTAAGCCCTAAATCATTGTGCCTTTTCAGCCTCAGTCCCCTCTTAGGAGCTATCCATTGGAGCCTATTGGACCACTTGCTTCAACAAAGGACGGTGTATATCTTGCAGGCGGAGCTCATTCCGGTAATATTCATCTCTGGGAGGTCAGTAGTTGGCTGAAATTCTCTTGTTTTTTCATCCAGTATGTGGGTATCTATATGCATATATGTGATAATTCAATATTGATTTGGTTGTTCATCTTATTTTCAATCCATTTTGTATATCTGTATGAGAATTTGTACATAAACATCCTTCAGAGTCTCATTTGGTTGAGGCCGTTGGATGATGAAAGTCCCACATCGACTAATTTAGGGAATGATCATGTGTTTATAAACAAAGAATACTCTCTCCATTGGTATGAGGCCTTTTGGGGAAGCCCAAAGCAAAGCCATGAGAGCTTATGCTCAAAGTGGACAATATCATACCATTGTGGAGAGTCGTGTTCGTCTAACATGGTATCAGAGCCATGCTCTAAACTTAGTCGTGCCAATCGCCAATAGATTGGTAACTCCTCAAATATCGAACAAAGGACTCCAAAAGAGGCAGTAAAAAATGACTAAGACTCCAAAGGAGTCGAACCTCGATTAAGGGGAGGCGCATTTTGTTCGAGGGGAGGTGTTGGATGATGAAAGTCCCACATCGGCTAATTTAGGGAATGATCATGTCTTTATAAACAAAGAATACTCTCTCCATTGGTATGAGGCCTTTTGAGGAACCCAAAACAAAGCCATGAGAGCTTATGCTCAAAGTGGACAATATCATACCATTGTGGAGAGTCGTGTTCGTCTAACCGAGGCAATTTGCAGGTTGGTAGTGGTAAATTGCTTAAGCTTTGGAGTGGGCATCATAAGCCCATAAAATTCATCCTGTTTTCTTGGGACGATTCGTTTCTCATTACTGGTTCGGCCGATGGAATGATTTGTGTCTGGTCCATGATTAGGTAAATGTATTCTCTTCACAATGCCTTTACAACCTCTTTGATTGATGCATTTTCGGTAGCTTTTCGTCGTTGTAATTTTTCCCTCGAACTTTATGCTAGTTTGCTGGATGTGGAACTTGTGGGAACTGCACAGCCAATGTTATACTGTCTCATAGAACATAAGTCGCCTTTAACTGGTCTAATTACTATGTCTGGCTACTCGATGTCGATGATCATTTCAAGCTCCCTCGATGGCAGTTTAAAGGTTGGTGAACTGTAACATTGTATCTATTATTCTTTTGAGGTCTGGTAAACTTATAGCTTGATTAACATGTCTGGGTTGCAGTTTTGGGATTTAATGTCGGGAATGATTCGGGGAACTCAAGGTCATTTAGAGGGAATCACTGAGATTGTTCTTCATCCAACTGAGCAATTTCTGTTCTCTGGGACTGTTGATGGGAAAATTTTTGCTAGCAGGCTTGAATTTGGATTGGATAACTGCATTACCATTAAAGAAAGTCAATTATTTGCATCAACAGGACACAAGTAATGTATGCTACTTGGAAATTTCTCTGTGTTGTTTGTAGTACGACTTTCCTTTTCTGTTATTTTTTAAATTCTTATTATCGTCGTTCTAAGATCCCACATCAGTTGGAAAGAGAAACAAAGCATTCTATAAGGGTGTGGAAACCTCTCCCTTGTAGACGTGTTTTAAAAACATTGAAGGGAAGCCTGAAAGTGAAAACCCAAAGAGGACAATATCTGCTAGCGGTGGATTTGAGCTGTTATTTATGGTATCAAAGCCAGACACCAGGCGGTGTGCCAACAAGGACGCTGGGCCCCTAAGGGGGTGGATTGTGAGATCCCGCATCGGTTGGAGAGGAGAACAAAACATTTCTTATAAGGGTGTGGAAACCTCTCCCTAGTATTCGCGTTTTAAAAACCTTGAGGGGAAGCCCGAACTTGAAAACCCAAAGAGAACAATATTTGCTAGTGGTGGGTTTTGGCTGTTACACATGGTATCAAAGCCAGACATCGAGCGGTGTGTCAGCGACGACACAGGGCCCCAAGAGAGTGGATTGTGAGAACCCACATTAGTTGGAGAGGGGAACGAAACATTCCTTATAAGGGTGTGGGAACCTCTCCCTAGTAGAGGCGTTTTAAAAACCTTGAGAGGAGAATCTCAAATGGAAAAGTAAAAAAAAGGACAATATCTGCTAGTGATGGGCTTGGGCTTGAGCGGTTACACTATAAATATTTTCTTTCCTTTGACAACAATTAATATTATACAAGCTGCAAGACCATCTTTGTTCCTTTGCCTTGTACACTTTAATGGTAACTTCATTGTTCAAGTTTCCACCATTAATGCAGGGGAGCTATTACTGCTCTGGCCTTCAGTCAAATGGATCTAGTTTCTGCATCCGAGGATTGCACAGTCTGCATATGGGACATCGATAGTCAGAGGATCATTCAAAAGCTTGACCACAAGAAAGGTAATTACTCCTCAGATGTAATTTTCTTGTTCGAGGCAATTTAATGTTCTGTTATTCGTGTCCTTTTGTCGATGAACACGAACTTATATGGTATCTATCAACAGGGAGAATAACCAACTTGGTAGCATTTCCACGGTCGTCGCTGCTGATCTCTACGTCAAACCGTAAGAGAGTCTTGAAACAGTTCGACAAGTATCCCCAGCCAGCCAACTTGTCGACGAGCACAATACCTCTCTTTCCCTCTTCCCGACCCCTCGGGGAGAATCCAAATCTCGTCGGATTCACAAGTGCCAGTTCACTGAATCAGCAAATATTTGATATGAAGGTCACTCTCTCTTTCAACTCTTCTACATTGTGCCTTTACTGTAGCTGCTAAGTAAGTCCAATGGATAAAGTGCAGCTTGTATTATCAATATATTCATACTCCCTTGCCATTGTGTGTTCAGACAGAAGGGACATCAGCAGCAATACAGATGAAAGTCGATACACGTTTACAAAGCCGAATGTGGGCGTCTAGAATGACGAAGCAAGTTATGGAGATGAACAACCATCTTCAATCACAGTTGCTTGACATGATGCAGACTCGTTTGTTCCCGAAGAAACGAAAAGATCAAAGAGATCGAGTCGCTCGGACTAGGGAGAAGCATCCATTGTCATTCAATTGATCTTTAGATGATCTTGGGGACCGGCTGTAAGTGATAAACCTTTTTGTTCTTTTTCTGGGTCTGTTCCTTAGTTTCATGTTTGCTAAATTTCCATTTCTAGATTTGTTCTACCAATTGCTGCTTTGAAGTTTGGGTCTAACTTCTTTAACAAGTATGGTTTTAATAAAATGTTTCATTATTTTACAAATCATGGAGGGGAGATGAGTGTTTAAATACTATTTAATTAGGGATTTCTCTCATTTTCTTTTAGGTTTAGGGTCGTGTGACCTATATGGGTCACCACCTCATGTATTTATAGATGTGTATAAAGAGGAGGATCACATGGTAGGCCTTGATCCATGTAACAAGGAAATCATATATTCTCTTTCATTCATGTA

mRNA sequence

CGGGCGGCGGCGGTGGCGGTGGCGGCAAATTGACTGCACGGAGTTCACTAGCGCCGAGAGGATTCTGGCTCGTTGATCCCTGAAGCCAAACTTGGAAGGTGAACCGAAAGTTCAAATCGTTTCAACTGATTTTGTCTCTTTCAATTGACAGGCGTCATTGAATTGAATGCACGCGCATAAGCAGTCGGGCCTTCGCATGCATTACCTCCATAGCCTCCATTAATGGGAGAATTTTTGCTTTCATCTCTTCCAACGTCAAAAAATGAGCAATGTTGGCGAAACAATGGCGTTGGCTGTGTGCAGCGACAAGAACATGGGATCAGGGATTACGATTTGGGATCCAAAAACAGGCGAAACTCTCCTTCATATTCCGACTTGCGCTTCGCCTTCTTATGGTTTAATTTCTTTGAGAAACGAGTTCCTTGTTGCTTCTCAGACTCGTAAGGAAGGCTCCGTTGGTGGTGGATCCATGTTCGTTTGGTCCCTGAGCAAGCCTCAGTCCCCTCTTAGGAGCTATCCATTGGAGCCTATTGGACCACTTGCTTCAACAAAGGACGGTGTATATCTTGCAGGCGGAGCTCATTCCGGTAATATTCATCTCTGGGAGCCCATAAAATTCATCCTGTTTTCTTGGGACGATTCGTTTCTCATTACTGGTTCGGCCGATGGAATGATTTGTGTCTGGTCCATGATTAGTTTGCTGGATGTGGAACTTGTGGGAACTGCACAGCCAATGTTATACTGTCTCATAGAACATAAGTCGCCTTTAACTGGTCTAATTACTATGTCTGGCTACTCGATGTCGATGATCATTTCAAGCTCCCTCGATGGCAGTTTAAAGTTTTGGGATTTAATGTCGGGAATGATTCGGGGAACTCAAGGTCATTTAGAGGGAATCACTGAGATTGTTCTTCATCCAACTGAGCAATTTCTGTTCTCTGGGACTGTTGATGGGAAAATTTTTGCTAGCAGGCTTGAATTTGGATTGGATAACTGCATTACCATTAAAGAAAGTCAATTATTTGCATCAACAGGACACAAGGGAGCTATTACTGCTCTGGCCTTCAGTCAAATGGATCTAGTTTCTGCATCCGAGGATTGCACAGTCTGCATATGGGACATCGATAGTCAGAGGATCATTCAAAAGCTTGACCACAAGAAAGGGAGAATAACCAACTTGGTAGCATTTCCACGGTCGTCGCTGCTGATCTCTACGTCAAACCGTAAGAGAGTCTTGAAACAGTTCGACAAGTATCCCCAGCCAGCCAACTTGTCGACGAGCACAATACCTCTCTTTCCCTCTTCCCGACCCCTCGGGGAGAATCCAAATCTCGTCGGATTCACAAGTGCCAGTTCACTGAATCAGCAAATATTTGATATGAAGACAGAAGGGACATCAGCAGCAATACAGATGAAAGTCGATACACGTTTACAAAGCCGAATGTGGGCGTCTAGAATGACGAAGCAAGTTATGGAGATGAACAACCATCTTCAATCACAGTTGCTTGACATGATGCAGACTCGTTTGTTCCCGAAGAAACGAAAAGATCAAAGAGATCGAGTCGCTCGGACTAGGGAGAAGCATCCATTGTCATTCAATTGATCTTTAGATGATCTTGGGGACCGGCTGTAAGTGATAAACCTTTTTGTTCTTTTTCTGGGTCTGTTCCTTAGTTTCATGTTTGCTAAATTTCCATTTCTAGATTTGTTCTACCAATTGCTGCTTTGAAGTTTGGGTCTAACTTCTTTAACAAGTATGGTTTTAATAAAATGTTTCATTATTTTACAAATCATGGAGGGGAGATGAGTGTTTAAATACTATTTAATTAGGGATTTCTCTCATTTTCTTTTAGGTTTAGGGTCGTGTGACCTATATGGGTCACCACCTCATGTATTTATAGATGTGTATAAAGAGGAGGATCACATGGTAGGCCTTGATCCATGTAACAAGGAAATCATATATTCTCTTTCATTCATGTA

Coding sequence (CDS)

ATGAGCAATGTTGGCGAAACAATGGCGTTGGCTGTGTGCAGCGACAAGAACATGGGATCAGGGATTACGATTTGGGATCCAAAAACAGGCGAAACTCTCCTTCATATTCCGACTTGCGCTTCGCCTTCTTATGGTTTAATTTCTTTGAGAAACGAGTTCCTTGTTGCTTCTCAGACTCGTAAGGAAGGCTCCGTTGGTGGTGGATCCATGTTCGTTTGGTCCCTGAGCAAGCCTCAGTCCCCTCTTAGGAGCTATCCATTGGAGCCTATTGGACCACTTGCTTCAACAAAGGACGGTGTATATCTTGCAGGCGGAGCTCATTCCGGTAATATTCATCTCTGGGAGCCCATAAAATTCATCCTGTTTTCTTGGGACGATTCGTTTCTCATTACTGGTTCGGCCGATGGAATGATTTGTGTCTGGTCCATGATTAGTTTGCTGGATGTGGAACTTGTGGGAACTGCACAGCCAATGTTATACTGTCTCATAGAACATAAGTCGCCTTTAACTGGTCTAATTACTATGTCTGGCTACTCGATGTCGATGATCATTTCAAGCTCCCTCGATGGCAGTTTAAAGTTTTGGGATTTAATGTCGGGAATGATTCGGGGAACTCAAGGTCATTTAGAGGGAATCACTGAGATTGTTCTTCATCCAACTGAGCAATTTCTGTTCTCTGGGACTGTTGATGGGAAAATTTTTGCTAGCAGGCTTGAATTTGGATTGGATAACTGCATTACCATTAAAGAAAGTCAATTATTTGCATCAACAGGACACAAGGGAGCTATTACTGCTCTGGCCTTCAGTCAAATGGATCTAGTTTCTGCATCCGAGGATTGCACAGTCTGCATATGGGACATCGATAGTCAGAGGATCATTCAAAAGCTTGACCACAAGAAAGGGAGAATAACCAACTTGGTAGCATTTCCACGGTCGTCGCTGCTGATCTCTACGTCAAACCGTAAGAGAGTCTTGAAACAGTTCGACAAGTATCCCCAGCCAGCCAACTTGTCGACGAGCACAATACCTCTCTTTCCCTCTTCCCGACCCCTCGGGGAGAATCCAAATCTCGTCGGATTCACAAGTGCCAGTTCACTGAATCAGCAAATATTTGATATGAAGACAGAAGGGACATCAGCAGCAATACAGATGAAAGTCGATACACGTTTACAAAGCCGAATGTGGGCGTCTAGAATGACGAAGCAAGTTATGGAGATGAACAACCATCTTCAATCACAGTTGCTTGACATGATGCAGACTCGTTTGTTCCCGAAGAAACGAAAAGATCAAAGAGATCGAGTCGCTCGGACTAGGGAGAAGCATCCATTGTCATTCAATTGA

Protein sequence

MSNVGETMALAVCSDKNMGSGITIWDPKTGETLLHIPTCASPSYGLISLRNEFLVASQTRKEGSVGGGSMFVWSLSKPQSPLRSYPLEPIGPLASTKDGVYLAGGAHSGNIHLWEPIKFILFSWDDSFLITGSADGMICVWSMISLLDVELVGTAQPMLYCLIEHKSPLTGLITMSGYSMSMIISSSLDGSLKFWDLMSGMIRGTQGHLEGITEIVLHPTEQFLFSGTVDGKIFASRLEFGLDNCITIKESQLFASTGHKGAITALAFSQMDLVSASEDCTVCIWDIDSQRIIQKLDHKKGRITNLVAFPRSSLLISTSNRKRVLKQFDKYPQPANLSTSTIPLFPSSRPLGENPNLVGFTSASSLNQQIFDMKTEGTSAAIQMKVDTRLQSRMWASRMTKQVMEMNNHLQSQLLDMMQTRLFPKKRKDQRDRVARTREKHPLSFN

Homology

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BLAST of Cp4.1LG09g09590 vs. ExPASy Swiss-Prot
Match: Q9M3B4 (Protein ROOT INITIATION DEFECTIVE 3 OS=Arabidopsis thaliana OX=3702 GN=RID3 PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.7e-44
Identity = 139/445 (31.24%), Postives = 220/445 (49.44%), Query Frame = 0


Query: 8   MALAVCSDKNMGSGITIWDPKTGETLLHIPTCASPSYGLISLRNEFLVASQTRKEGSVGG 67
           M + V +  ++  GI  WD KTG   L    CASP++GL ++  +FL +SQ     +   
Sbjct: 1   MEITVIASSSIDEGIGSWDLKTGTEQLQFKPCASPAHGLTAVGEKFLASSQLSARNT--S 60

Query: 68  GSMFVWSLSKPQSPLRSYPLEPIGPLASTKDGVYLAGGAHSGNIHLWE------------ 127
           GS+F WS +KPQ+ ++SYP+EPI  LA+  +G YL GG  SG+I+LWE            
Sbjct: 61  GSIFYWSWTKPQAEVKSYPVEPIKALAANNEGTYLVGGGISGDIYLWEVATGKLLKKWHG 120

Query: 128 ---PIKFILFSWDDSFLITGSADGMICVWSMISLLDVELVGTAQPMLY--CLIEHKSPLT 187
               +  ++FS DDS L++GS DG I VWS+I L D +        LY     EH   +T
Sbjct: 121 HYRSVTCLVFSGDDSLLVSGSQDGSIRVWSLIRLFD-DFQRQQGNTLYEHNFNEHTMSVT 180

Query: 188 GLITMSGYSMSMIISSSLDGSLKFWDLMSGMIRGTQGHLEGITEIVLHPTEQFLFSGTVD 247
            ++   G   ++IISSS D + K W L  G +         I  + L P     ++G  D
Sbjct: 181 DIVIDYGGCNAVIISSSEDRTCKVWSLSRGKLLKNIIFPSVINALALDPGGCVFYAGARD 240

Query: 248 GKIFASRLEFGLDNCITIKESQLFASTGHKG-AITALAFSQMD--LVSASEDCTVCIWDI 307
            KI+      G  N  +   +Q+  S   KG AIT LA+      L+S SED  VC+WD 
Sbjct: 241 SKIY-----IGAINATSEYGTQVLGSVSEKGKAITCLAYCADGNLLISGSEDGVVCVWDP 300

Query: 308 DSQRIIQKLDH----KKGRITNLVAFPRSSLLISTSNRKRVL---------KQFDKYPQP 367
            S R ++ L H    +KG + N+    ++  +++ SN+ +V             +KY +P
Sbjct: 301 KSLRHVRTLIHAKGSRKGPVNNIQIVRKT--IVANSNKTQVSWKSRGALIPPPLEKYERP 360

Query: 368 ANLSTSTIPLFPSSRPLGENPNLVGFTSASSLNQQIFDMKTEGTSAAIQMKVDTRLQSRM 420
              +   I +     P  + P    F SA  +++Q+ +++ +G SAA +M+++ RL+   
Sbjct: 361 VEDTMDGI-VTVDPPPFSDVPVYSSFLSADLIDEQVKELQQQG-SAATEMEME-RLKLEY 420

[Close]

BLAST of Cp4.1LG09g09590 vs. ExPASy Swiss-Prot
Match: A0A1L8HX76 (WD repeat-containing protein 18 OS=Xenopus laevis OX=8355 GN=wdr18 PE=3 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 1.6e-26
Identity = 97/335 (28.96%), Postives = 159/335 (47.46%), Query Frame = 0


Query: 23  TIWDPKTGETLLHIPTCASPSYGLISLRNEFLVASQTRKEGSVGGGSMFVWSLS-KPQSP 82
           T+W+P TG  LL      +   GL  L  ++L+       G +G   + VW L  + Q  
Sbjct: 21  TVWEPVTGSVLLTYRGGNTSHRGLAVLGGQYLLG------GQLGKNYINVWELQRRDQLQ 80

Query: 83  LRSYPLEPIGPLASTKDGVYLAGGAHSGNIHLWE---------------PIKFILFSWDD 142
            +     P+  L+++ +G+YL  G  + +I+LWE                +  + F+ D 
Sbjct: 81  QKIVCPGPVNCLSASPNGLYLVAGI-AESIYLWEVSTGHLLAILNSHYQDVTCLTFTDDS 140

Query: 143 SFLITGSADGMICVWSMISLLDVELVGTAQPMLYCLIEHKSPLTGLITMSGYSMSMIISS 202
           S +I+G+ D ++ VW + S+L VE     +P  Y    H  P+T +    G   + + +S
Sbjct: 141 SHIISGAKDSLVLVWGLYSVLQVETSRGPEPR-YVWSRHSLPITDVQCGIGGPQARVATS 200

Query: 203 SLDGSLKFWDLMSGMIRGTQGHLEGITEIVLHPTEQFLFSGTVDGKIFASRLEFGLDNC- 262
           SLD ++K WD+ SG +  +      IT +   P E  LF G  DG I+   L    +   
Sbjct: 201 SLDQTIKLWDICSGDLLVSVLFDVRITSVAFDPAEYHLFCGGSDGVIYQVDLYTTPEQRE 260

Query: 263 ITIKESQLFASTGHKGAITALAFSQMD---LVSASEDCTVCIWDIDSQRIIQKLDHKKGR 322
                 Q     GH+  +T L+ S +D   L+S S D TVC+WDI S++ ++ + H +G 
Sbjct: 261 RPFHPEQEMVFKGHRNQVTCLSVS-LDGSMLISGSHDETVCVWDIQSKQSLRSVPH-RGP 320

Query: 323 ITN--LVAFPRSSLLISTSNRKRVLKQFDKYPQPA 336
           +TN  ++A P S++L + S     L  F K+ Q A
Sbjct: 321 VTNVFIIAAP-SNMLRAESKPSFPLPHFSKHLQGA 344

[Close]

BLAST of Cp4.1LG09g09590 vs. ExPASy Swiss-Prot
Match: Q68EI0 (WD repeat-containing protein 18 OS=Danio rerio OX=7955 GN=wdr18 PE=2 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 7.0e-22
Identity = 90/344 (26.16%), Postives = 161/344 (46.80%), Query Frame = 0


Query: 24  IWDPKTGETLLHIPTCASPSYGLISLRNEFLVASQTRKEGSVGGGSMFVWSLSKPQSPLR 83
           ++DP TG   L      + S  L  L  E+++ +Q      +G   + VW + + +  L+
Sbjct: 22  VYDPHTGSEFLSYRGGNTSSRSLTILNGEYILGAQ------LGKNYINVWEIQR-KDQLQ 81

Query: 84  SYPLEP--IGPLASTKDGVYLAGGAHSGNIHLWE---------------PIKFILFSWDD 143
              + P  +  L ++ DG+Y+  G     I+LWE                +  I F+ D 
Sbjct: 82  QKIVCPGIVTCLCASPDGLYVLAGIAEA-IYLWEVSTGNLLAILSRHFQDLSCIKFTDDS 141

Query: 144 SFLITGSADGMICVWSMISLLDVELVGTAQPMLYCLIEHKSPLTGLITMSGYSMSMIISS 203
           S  ++G  D +  +W++ S++ ++   T +P  + L  H  P+T +        + + ++
Sbjct: 142 SHFVSGGKDNLAFIWNLSSVVQLDSSRTPEPR-HILSRHSLPITDIHCGLMGPQARVATA 201

Query: 204 SLDGSLKFWDLMSGMIRGTQGHLEGITEIVLHPTEQFLFSGTVDGKIF-ASRLEFGLDNC 263
           SLD ++K W++ SG +  +     GI  +   P E FLF G  DG IF  S     L   
Sbjct: 202 SLDQTVKVWEISSGEMLLSVLFDVGIMSVTFDPCEYFLFCGGSDGNIFQVSLCSTSLSRD 261

Query: 264 ITIKE----SQLFASTGHKGAITALAFSQMD---LVSASEDCTVCIWDIDSQRIIQKLDH 323
            T +     +Q+F   GH+  +T L+ S MD   L+S S D TV +WD+ S++ I  ++H
Sbjct: 262 KTFQSDSEGNQVF--KGHRNLVTCLSVS-MDGTVLLSGSNDETVRMWDVQSKQCIWTINH 321

Query: 324 KKGRITNLVAFPR-SSLLISTSNRKRVLKQFDKYPQPANLSTST 342
            +G +TN    P  +++ +S S+    L +F ++  P+     T
Sbjct: 322 -RGPVTNAAIIPAPANMFLSDSHPAVPLPRFSRHLNPSEQGDGT 352

[Close]

BLAST of Cp4.1LG09g09590 vs. ExPASy Swiss-Prot
Match: Q3SZD4 (WD repeat-containing protein 18 OS=Bos taurus OX=9913 GN=WDR18 PE=2 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 1.0e-20
Identity = 91/347 (26.22%), Postives = 154/347 (44.38%), Query Frame = 0


Query: 8   MALAVCSDKNMGS-GITIWDPKTGETLLHIPTCASPSYGLISLRNEFLVASQTRKEGSVG 67
           M +AVC+D         +W+  +G  LL      +   GL  L  E+L+A+Q      +G
Sbjct: 5   MEVAVCTDSAAQLWSCVVWELHSGANLLTYRGGQAGPRGLALLNGEYLLAAQ------LG 64

Query: 68  GGSMFVWSLS-KPQSPLRSYPLEPIGPLASTKDGVYLAGGAHSGNIHLWE---------- 127
              +  W L  K Q   +     P+  L ++ +G+Y+  G  S NI+LWE          
Sbjct: 65  KNYICAWELQRKDQLQQKIMCPGPVTCLTTSPNGLYVLAGI-SENIYLWEVSTGNLLVIL 124

Query: 128 -----PIKFILFSWDDSFLITGSADGMICVWSMISLLDVELVGTAQPMLYCLIEHKSPLT 187
                 +  + F+ D S  I+G  D ++  WS+ S+L  +   T  P  +    H  P+T
Sbjct: 125 SRHYQDVSCLQFTGDSSHFISGGKDCLVLAWSLCSVLQADPSRTPAPR-HVWSRHTLPIT 184

Query: 188 GLITMSGYSMSMIISSSLDGSLKFWDLMSGMIRGTQGHLEGITEIVLHPTEQFLFSGTVD 247
            L    G  ++ + ++SLD ++K W++ SG +  +     GI  + +   E ++F G  D
Sbjct: 185 DLHCGFGGPLARVATASLDQTVKLWEVSSGELLLSVLFDVGILAVTMDLAEHYMFCGGSD 244

Query: 248 GKIFASRL---EFGLDNCITIKESQLFASTGHKGAITALAFSQ--MDLVSASEDCTVCIW 307
           G IF   L       +     ++       GH+  +T L+ S     L+S S D TV +W
Sbjct: 245 GSIFQVDLCTWPGQREKSFQPEQEHGKVFRGHRNQVTCLSVSTDGSVLLSGSHDETVRLW 304

Query: 308 DIDSQRIIQKLDHKKGRITN-LVAFPRSSLLISTSNRKRVLKQFDKY 332
           D+ SQ+ ++ +   KG +TN  +     S+L S       L  F+K+
Sbjct: 305 DVQSQQCLRTVT-LKGPVTNACIMLAPVSMLSSDFRPGLPLPHFNKH 342

[Close]

BLAST of Cp4.1LG09g09590 vs. ExPASy Swiss-Prot
Match: Q9BV38 (WD repeat-containing protein 18 OS=Homo sapiens OX=9606 GN=WDR18 PE=1 SV=2)

HSP 1 Score: 96.7 bits (239), Expect = 7.2e-19
Identity = 92/348 (26.44%), Postives = 155/348 (44.54%), Query Frame = 0


Query: 8   MALAVCSDK--NMGSGITIWDPKTGETLLHIPTCASPSYGLISLRNEFLVASQTRKEGSV 67
           M +AVC+D    M S I +W+  +G  LL      +   GL  L  E+L+A+Q      +
Sbjct: 5   MEVAVCTDSAAPMWSCI-VWELHSGANLLTYRGGQAGPRGLALLNGEYLLAAQ------L 64

Query: 68  GGGSMFVWSLS-KPQSPLRSYPLEPIGPLASTKDGVYLAGGAHSGNIHLWE--------- 127
           G   +  W L  K Q   +     P+  L ++ +G+Y+  G  + +IHLWE         
Sbjct: 65  GKNYISAWELQRKDQLQQKIMCPGPVTCLTASPNGLYVLAGV-AESIHLWEVSTGNLLVI 124

Query: 128 ------PIKFILFSWDDSFLITGSADGMICVWSMISLLDVELVGTAQPMLYCLIEHKSPL 187
                  +  + F+ D S  I+G  D ++ VWS+ S+L  +      P  +    H  P+
Sbjct: 125 LSRHYQDVSCLQFTGDSSHFISGGKDCLVLVWSLCSVLQADPSRIPAPR-HVWSHHALPI 184

Query: 188 TGLITMSGYSMSMIISSSLDGSLKFWDLMSGMIRGTQGHLEGITEIVLHPTEQFLFSGTV 247
           T L    G  ++ + +SSLD ++K W++ SG +  +      I  + +   E  +F G  
Sbjct: 185 TDLHCGFGGPLARVATSSLDQTVKLWEVSSGELLLSVLFDVSIMAVTMDLAEHHMFCGGS 244

Query: 248 DGKIFASRL---EFGLDNCITIKESQLFASTGHKGAITALAFSQ--MDLVSASEDCTVCI 307
           +G IF   L       +     ++       GH+  +T L+ S     L+S S D TV +
Sbjct: 245 EGSIFQVDLFTWPGQRERSFHPEQDAGKVFKGHRNQVTCLSVSTDGSVLLSGSHDETVRL 304

Query: 308 WDIDSQRIIQKLDHKKGRITN-LVAFPRSSLLISTSNRKRVLKQFDKY 332
           WD+ S++ I+ +   KG +TN  +     S+L S       L  F+K+
Sbjct: 305 WDVQSKQCIRTV-ALKGPVTNAAILLAPVSMLSSDFRPSLPLPHFNKH 342

[Close]

BLAST of Cp4.1LG09g09590 vs. NCBI nr
Match: XP_023542664.1 (protein ROOT INITIATION DEFECTIVE 3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 875 bits (2261), Expect = 0.0
Identity = 446/461 (96.75%), Postives = 446/461 (96.75%), Query Frame = 0


Query: 1   MSNVGETMALAVCSDKNMGSGITIWDPKTGETLLHIPTCASPSYGLISLRNEFLVASQTR 60
           MSNVGETMALAVCSDKNMGSGITIWDPKTGETLLHIPTCASPSYGLISLRNEFLVASQTR
Sbjct: 1   MSNVGETMALAVCSDKNMGSGITIWDPKTGETLLHIPTCASPSYGLISLRNEFLVASQTR 60

Query: 61  KEGSVGGGSMFVWSLSKPQSPLRSYPLEPIGPLASTKDGVYLAGGAHSGNIHLWE----- 120
           KEGSVGGGSMFVWSLSKPQSPLRSYPLEPIGPLASTKDGVYLAGGAHSGNIHLWE     
Sbjct: 61  KEGSVGGGSMFVWSLSKPQSPLRSYPLEPIGPLASTKDGVYLAGGAHSGNIHLWEVGSGK 120

Query: 121 ----------PIKFILFSWDDSFLITGSADGMICVWSMISLLDVELVGTAQPMLYCLIEH 180
                     PIKFILFSWDDSFLITGSADGMICVWSMISLLDVELVGTAQPMLYCLIEH
Sbjct: 121 LLKLWSGHHKPIKFILFSWDDSFLITGSADGMICVWSMISLLDVELVGTAQPMLYCLIEH 180

Query: 181 KSPLTGLITMSGYSMSMIISSSLDGSLKFWDLMSGMIRGTQGHLEGITEIVLHPTEQFLF 240
           KSPLTGLITMSGYSMSMIISSSLDGSLKFWDLMSGMIRGTQGHLEGITEIVLHPTEQFLF
Sbjct: 181 KSPLTGLITMSGYSMSMIISSSLDGSLKFWDLMSGMIRGTQGHLEGITEIVLHPTEQFLF 240

Query: 241 SGTVDGKIFASRLEFGLDNCITIKESQLFASTGHKGAITALAFSQMDLVSASEDCTVCIW 300
           SGTVDGKIFASRLEFGLDNCITIKESQLFASTGHKGAITALAFSQMDLVSASEDCTVCIW
Sbjct: 241 SGTVDGKIFASRLEFGLDNCITIKESQLFASTGHKGAITALAFSQMDLVSASEDCTVCIW 300

Query: 301 DIDSQRIIQKLDHKKGRITNLVAFPRSSLLISTSNRKRVLKQFDKYPQPANLSTSTIPLF 360
           DIDSQRIIQKLDHKKGRITNLVAFPRSSLLISTSNRKRVLKQFDKYPQPANLSTSTIPLF
Sbjct: 301 DIDSQRIIQKLDHKKGRITNLVAFPRSSLLISTSNRKRVLKQFDKYPQPANLSTSTIPLF 360

Query: 361 PSSRPLGENPNLVGFTSASSLNQQIFDMKTEGTSAAIQMKVDTRLQSRMWASRMTKQVME 420
           PSSRPLGENPNLVGFTSASSLNQQIFDMKTEGTSAAIQMKVDTRLQSRMWASRMTKQVME
Sbjct: 361 PSSRPLGENPNLVGFTSASSLNQQIFDMKTEGTSAAIQMKVDTRLQSRMWASRMTKQVME 420

Query: 421 MNNHLQSQLLDMMQTRLFPKKRKDQRDRVARTREKHPLSFN 446
           MNNHLQSQLLDMMQTRLFPKKRKDQRDRVARTREKHPLSFN
Sbjct: 421 MNNHLQSQLLDMMQTRLFPKKRKDQRDRVARTREKHPLSFN 461

[Close]

BLAST of Cp4.1LG09g09590 vs. NCBI nr
Match: KAG7012309.1 (Protein ROOT INITIATION DEFECTIVE 3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 859 bits (2219), Expect = 1.27e-313
Identity = 437/461 (94.79%), Postives = 443/461 (96.10%), Query Frame = 0


Query: 1   MSNVGETMALAVCSDKNMGSGITIWDPKTGETLLHIPTCASPSYGLISLRNEFLVASQTR 60
           MSNVGETMALAVCSDKNMGSGITIWDPKTGETLLHIPTCASPSYGLISLRNEFLVASQTR
Sbjct: 1   MSNVGETMALAVCSDKNMGSGITIWDPKTGETLLHIPTCASPSYGLISLRNEFLVASQTR 60

Query: 61  KEGSVGGGSMFVWSLSKPQSPLRSYPLEPIGPLASTKDGVYLAGGAHSGNIHLWE----- 120
           KEGSVGGGSMFVWSLSKPQSPLRSYPLEPIGPLASTKDGVYLAGGAHSGNIHLWE     
Sbjct: 61  KEGSVGGGSMFVWSLSKPQSPLRSYPLEPIGPLASTKDGVYLAGGAHSGNIHLWEVGSGK 120

Query: 121 ----------PIKFILFSWDDSFLITGSADGMICVWSMISLLDVELVGTAQPMLYCLIEH 180
                     PIKFILFSWDDSFLITGSADGMICVWSMISLLDVELVG+AQP+LYCL+EH
Sbjct: 121 LLKLWSGHHKPIKFILFSWDDSFLITGSADGMICVWSMISLLDVELVGSAQPILYCLMEH 180

Query: 181 KSPLTGLITMSGYSMSMIISSSLDGSLKFWDLMSGMIRGTQGHLEGITEIVLHPTEQFLF 240
           KS LTGLITMSGYSMSMIISSSLDGSLKFWDLMSGMIRGTQGH+EGITEIVLHPTEQFLF
Sbjct: 181 KSSLTGLITMSGYSMSMIISSSLDGSLKFWDLMSGMIRGTQGHVEGITEIVLHPTEQFLF 240

Query: 241 SGTVDGKIFASRLEFGLDNCITIKESQLFASTGHKGAITALAFSQMDLVSASEDCTVCIW 300
           SGTVDGKIFASRLEFGLDNCITIKESQLFASTGHKGAITALAFSQMDLVSASEDCTVCIW
Sbjct: 241 SGTVDGKIFASRLEFGLDNCITIKESQLFASTGHKGAITALAFSQMDLVSASEDCTVCIW 300

Query: 301 DIDSQRIIQKLDHKKGRITNLVAFPRSSLLISTSNRKRVLKQFDKYPQPANLSTSTIPLF 360
           DIDSQRIIQKLDHKKGRITNLVA PRSSLLISTSNRKRVLKQFDKYPQPANLSTSTIPLF
Sbjct: 301 DIDSQRIIQKLDHKKGRITNLVAVPRSSLLISTSNRKRVLKQFDKYPQPANLSTSTIPLF 360

Query: 361 PSSRPLGENPNLVGFTSASSLNQQIFDMKTEGTSAAIQMKVDTRLQSRMWASRMTKQVME 420
           PSSRPLGENPNLVGFTSA SLNQQIFDMKTEGTSAAIQMKVDTRLQSRMWASRMTKQVME
Sbjct: 361 PSSRPLGENPNLVGFTSAGSLNQQIFDMKTEGTSAAIQMKVDTRLQSRMWASRMTKQVME 420

Query: 421 MNNHLQSQLLDMMQTRLFPKKRKDQRDRVARTREKHPLSFN 446
           MNNHLQS+LLDMMQTRLFPKKRKDQRDRVARTREKHPLSF+
Sbjct: 421 MNNHLQSKLLDMMQTRLFPKKRKDQRDRVARTREKHPLSFH 461

[Close]

BLAST of Cp4.1LG09g09590 vs. NCBI nr
Match: XP_022954958.1 (protein ROOT INITIATION DEFECTIVE 3-like [Cucurbita moschata])

HSP 1 Score: 857 bits (2215), Expect = 5.13e-313
Identity = 436/461 (94.58%), Postives = 442/461 (95.88%), Query Frame = 0


Query: 1   MSNVGETMALAVCSDKNMGSGITIWDPKTGETLLHIPTCASPSYGLISLRNEFLVASQTR 60
           MSNVGETMALAVCSDKNMGSGITIWDPKTGETLLHIPTCASPSYGLISLRNEFLVASQTR
Sbjct: 1   MSNVGETMALAVCSDKNMGSGITIWDPKTGETLLHIPTCASPSYGLISLRNEFLVASQTR 60

Query: 61  KEGSVGGGSMFVWSLSKPQSPLRSYPLEPIGPLASTKDGVYLAGGAHSGNIHLWE----- 120
           KEGSVGGGSMFVWSLSKPQSPLRSYPLEPIGPLASTKDG YLAGGAHSGNIHLWE     
Sbjct: 61  KEGSVGGGSMFVWSLSKPQSPLRSYPLEPIGPLASTKDGAYLAGGAHSGNIHLWEVGSGK 120

Query: 121 ----------PIKFILFSWDDSFLITGSADGMICVWSMISLLDVELVGTAQPMLYCLIEH 180
                     PIKFILFSWDDSFLITGSADGMICVWSMISLLDVELVG+AQP+LYCL+EH
Sbjct: 121 LLKLWSGHHKPIKFILFSWDDSFLITGSADGMICVWSMISLLDVELVGSAQPILYCLMEH 180

Query: 181 KSPLTGLITMSGYSMSMIISSSLDGSLKFWDLMSGMIRGTQGHLEGITEIVLHPTEQFLF 240
           KS LTGLITMSGYSMSMIISSSLDGSLKFWDLMSGMIRGTQGH+EGITEIVLHPTEQFLF
Sbjct: 181 KSSLTGLITMSGYSMSMIISSSLDGSLKFWDLMSGMIRGTQGHVEGITEIVLHPTEQFLF 240

Query: 241 SGTVDGKIFASRLEFGLDNCITIKESQLFASTGHKGAITALAFSQMDLVSASEDCTVCIW 300
           SGTVDGKIFASRLEFGLDNCITIKESQLFASTGHKGAITALAFSQMDLVSASEDCTVCIW
Sbjct: 241 SGTVDGKIFASRLEFGLDNCITIKESQLFASTGHKGAITALAFSQMDLVSASEDCTVCIW 300

Query: 301 DIDSQRIIQKLDHKKGRITNLVAFPRSSLLISTSNRKRVLKQFDKYPQPANLSTSTIPLF 360
           DIDSQRIIQKLDHKKGRITNLVA PRSSLLISTSNRKRVLKQFDKYPQPANLSTSTIPLF
Sbjct: 301 DIDSQRIIQKLDHKKGRITNLVAVPRSSLLISTSNRKRVLKQFDKYPQPANLSTSTIPLF 360

Query: 361 PSSRPLGENPNLVGFTSASSLNQQIFDMKTEGTSAAIQMKVDTRLQSRMWASRMTKQVME 420
           PSSRPLGENPNLVGFTSA SLNQQIFDMKTEGTSAAIQMKVDTRLQSRMWASRMTKQVME
Sbjct: 361 PSSRPLGENPNLVGFTSAGSLNQQIFDMKTEGTSAAIQMKVDTRLQSRMWASRMTKQVME 420

Query: 421 MNNHLQSQLLDMMQTRLFPKKRKDQRDRVARTREKHPLSFN 446
           MNNHLQS+LLDMMQTRLFPKKRKDQRDRVARTREKHPLSF+
Sbjct: 421 MNNHLQSKLLDMMQTRLFPKKRKDQRDRVARTREKHPLSFH 461

[Close]

BLAST of Cp4.1LG09g09590 vs. NCBI nr
Match: KAG6573122.1 (Protein ROOT INITIATION DEFECTIVE 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 854 bits (2206), Expect = 1.21e-311
Identity = 435/461 (94.36%), Postives = 442/461 (95.88%), Query Frame = 0


Query: 1   MSNVGETMALAVCSDKNMGSGITIWDPKTGETLLHIPTCASPSYGLISLRNEFLVASQTR 60
           MSNVGETMALAVCSDKNMGSGITIWDPKTGETLLHIPTCASPSYGLISLRNEFLVASQTR
Sbjct: 1   MSNVGETMALAVCSDKNMGSGITIWDPKTGETLLHIPTCASPSYGLISLRNEFLVASQTR 60

Query: 61  KEGSVGGGSMFVWSLSKPQSPLRSYPLEPIGPLASTKDGVYLAGGAHSGNIHLWE----- 120
           KEGSVGGGSMFVWSLSKPQSPLRSYPLEPIGPLASTKDGVYLAGGAHSGNIHLWE     
Sbjct: 61  KEGSVGGGSMFVWSLSKPQSPLRSYPLEPIGPLASTKDGVYLAGGAHSGNIHLWEVGSGK 120

Query: 121 ----------PIKFILFSWDDSFLITGSADGMICVWSMISLLDVELVGTAQPMLYCLIEH 180
                     PIKFILFSWDDSFLITGSADGMICVWSMISLLDVELVG+AQP+LYCL+EH
Sbjct: 121 LLKLWSGHHKPIKFILFSWDDSFLITGSADGMICVWSMISLLDVELVGSAQPILYCLMEH 180

Query: 181 KSPLTGLITMSGYSMSMIISSSLDGSLKFWDLMSGMIRGTQGHLEGITEIVLHPTEQFLF 240
           KS LTGLITMSGYSMSMIISSSLDGSLKFWDLMSGMIRGTQGH+EGITEIVLHPTEQFLF
Sbjct: 181 KSSLTGLITMSGYSMSMIISSSLDGSLKFWDLMSGMIRGTQGHVEGITEIVLHPTEQFLF 240

Query: 241 SGTVDGKIFASRLEFGLDNCITIKESQLFASTGHKGAITALAFSQMDLVSASEDCTVCIW 300
           SGTVDGKIFASRLEFGLDNCITIKESQLFASTGHKGAITALAFSQMDLVSASEDCTVCIW
Sbjct: 241 SGTVDGKIFASRLEFGLDNCITIKESQLFASTGHKGAITALAFSQMDLVSASEDCTVCIW 300

Query: 301 DIDSQRIIQKLDHKKGRITNLVAFPRSSLLISTSNRKRVLKQFDKYPQPANLSTSTIPLF 360
           DIDSQRIIQKLDHKKGRITNLVA PRSSLLISTS+RKRVLKQFDKYPQPANLSTSTIPLF
Sbjct: 301 DIDSQRIIQKLDHKKGRITNLVAVPRSSLLISTSSRKRVLKQFDKYPQPANLSTSTIPLF 360

Query: 361 PSSRPLGENPNLVGFTSASSLNQQIFDMKTEGTSAAIQMKVDTRLQSRMWASRMTKQVME 420
           PSSRPL ENPNLVGFTSA SLNQQIFDMKTEGTSAAIQMKVDTRLQSRMWASRMTKQVME
Sbjct: 361 PSSRPLRENPNLVGFTSAGSLNQQIFDMKTEGTSAAIQMKVDTRLQSRMWASRMTKQVME 420

Query: 421 MNNHLQSQLLDMMQTRLFPKKRKDQRDRVARTREKHPLSFN 446
           MNNHLQS+LLDMMQTRLFPKKRKDQRDRVARTREKHPLSF+
Sbjct: 421 MNNHLQSKLLDMMQTRLFPKKRKDQRDRVARTREKHPLSFH 461

[Close]

BLAST of Cp4.1LG09g09590 vs. NCBI nr
Match: XP_022994395.1 (protein ROOT INITIATION DEFECTIVE 3-like [Cucurbita maxima])

HSP 1 Score: 841 bits (2173), Expect = 1.29e-306
Identity = 430/461 (93.28%), Postives = 438/461 (95.01%), Query Frame = 0


Query: 1   MSNVGETMALAVCSDKNMGSGITIWDPKTGETLLHIPTCASPSYGLISLRNEFLVASQTR 60
           MSNVGETMALAVCSDKNMGSGITIWDPKTGETLLHIPTCASPSYGLISLRNEFLVASQTR
Sbjct: 1   MSNVGETMALAVCSDKNMGSGITIWDPKTGETLLHIPTCASPSYGLISLRNEFLVASQTR 60

Query: 61  KEGSVGGGSMFVWSLSKPQSPLRSYPLEPIGPLASTKDGVYLAGGAHSGNIHLWE----- 120
           KEGSVGGGSMFVWSLSKPQSPLRSYPLEPIGPLASTKDGVYLAGGAHSGNIHLWE     
Sbjct: 61  KEGSVGGGSMFVWSLSKPQSPLRSYPLEPIGPLASTKDGVYLAGGAHSGNIHLWEVGSGK 120

Query: 121 ----------PIKFILFSWDDSFLITGSADGMICVWSMISLLDVELVGTAQPMLYCLIEH 180
                     PIKFILFSWDDSFLITGSADGMI VWSMISLLDVELVG+AQP+LY L+EH
Sbjct: 121 LLKLWSGHHKPIKFILFSWDDSFLITGSADGMIFVWSMISLLDVELVGSAQPILYSLMEH 180

Query: 181 KSPLTGLITMSGYSMSMIISSSLDGSLKFWDLMSGMIRGTQGHLEGITEIVLHPTEQFLF 240
           KS LTGLITMSGYSMSMIISSSLDGSLKFWDLMSGMIRGTQ H+EGITEIVLHPTEQFLF
Sbjct: 181 KSSLTGLITMSGYSMSMIISSSLDGSLKFWDLMSGMIRGTQAHVEGITEIVLHPTEQFLF 240

Query: 241 SGTVDGKIFASRLEFGLDNCITIKESQLFASTGHKGAITALAFSQMDLVSASEDCTVCIW 300
           SGTVDGKIFASRLEFGLDNCITIKESQLFASTGHKGAITALAFS MDLVSASEDCTVCIW
Sbjct: 241 SGTVDGKIFASRLEFGLDNCITIKESQLFASTGHKGAITALAFSLMDLVSASEDCTVCIW 300

Query: 301 DIDSQRIIQKLDHKKGRITNLVAFPRSSLLISTSNRKRVLKQFDKYPQPANLSTSTIPLF 360
           DI+SQ IIQKL+HKKGRITNLVA PRSSLLISTSNRKRVLKQFDKYPQPANLSTSTIPLF
Sbjct: 301 DINSQMIIQKLEHKKGRITNLVAVPRSSLLISTSNRKRVLKQFDKYPQPANLSTSTIPLF 360

Query: 361 PSSRPLGENPNLVGFTSASSLNQQIFDMKTEGTSAAIQMKVDTRLQSRMWASRMTKQVME 420
           PSSRPLGENPNL+GFTSA SLNQQIFDMKTEGTSAAIQMKVDTRLQSRMWASRMTKQVME
Sbjct: 361 PSSRPLGENPNLIGFTSAGSLNQQIFDMKTEGTSAAIQMKVDTRLQSRMWASRMTKQVME 420

Query: 421 MNNHLQSQLLDMMQTRLFPKKRKDQRDRVARTREKHPLSFN 446
           MNNHLQSQLLDMMQTRLFPKKRKDQRDRVARTREKHPLSF+
Sbjct: 421 MNNHLQSQLLDMMQTRLFPKKRKDQRDRVARTREKHPLSFH 461

[Close]

BLAST of Cp4.1LG09g09590 vs. ExPASy TrEMBL
Match: A0A6J1GSK9 (protein ROOT INITIATION DEFECTIVE 3-like OS=Cucurbita moschata OX=3662 GN=LOC111457062 PE=4 SV=1)

HSP 1 Score: 857 bits (2215), Expect = 2.48e-313
Identity = 436/461 (94.58%), Postives = 442/461 (95.88%), Query Frame = 0


Query: 1   MSNVGETMALAVCSDKNMGSGITIWDPKTGETLLHIPTCASPSYGLISLRNEFLVASQTR 60
           MSNVGETMALAVCSDKNMGSGITIWDPKTGETLLHIPTCASPSYGLISLRNEFLVASQTR
Sbjct: 1   MSNVGETMALAVCSDKNMGSGITIWDPKTGETLLHIPTCASPSYGLISLRNEFLVASQTR 60

Query: 61  KEGSVGGGSMFVWSLSKPQSPLRSYPLEPIGPLASTKDGVYLAGGAHSGNIHLWE----- 120
           KEGSVGGGSMFVWSLSKPQSPLRSYPLEPIGPLASTKDG YLAGGAHSGNIHLWE     
Sbjct: 61  KEGSVGGGSMFVWSLSKPQSPLRSYPLEPIGPLASTKDGAYLAGGAHSGNIHLWEVGSGK 120

Query: 121 ----------PIKFILFSWDDSFLITGSADGMICVWSMISLLDVELVGTAQPMLYCLIEH 180
                     PIKFILFSWDDSFLITGSADGMICVWSMISLLDVELVG+AQP+LYCL+EH
Sbjct: 121 LLKLWSGHHKPIKFILFSWDDSFLITGSADGMICVWSMISLLDVELVGSAQPILYCLMEH 180

Query: 181 KSPLTGLITMSGYSMSMIISSSLDGSLKFWDLMSGMIRGTQGHLEGITEIVLHPTEQFLF 240
           KS LTGLITMSGYSMSMIISSSLDGSLKFWDLMSGMIRGTQGH+EGITEIVLHPTEQFLF
Sbjct: 181 KSSLTGLITMSGYSMSMIISSSLDGSLKFWDLMSGMIRGTQGHVEGITEIVLHPTEQFLF 240

Query: 241 SGTVDGKIFASRLEFGLDNCITIKESQLFASTGHKGAITALAFSQMDLVSASEDCTVCIW 300
           SGTVDGKIFASRLEFGLDNCITIKESQLFASTGHKGAITALAFSQMDLVSASEDCTVCIW
Sbjct: 241 SGTVDGKIFASRLEFGLDNCITIKESQLFASTGHKGAITALAFSQMDLVSASEDCTVCIW 300

Query: 301 DIDSQRIIQKLDHKKGRITNLVAFPRSSLLISTSNRKRVLKQFDKYPQPANLSTSTIPLF 360
           DIDSQRIIQKLDHKKGRITNLVA PRSSLLISTSNRKRVLKQFDKYPQPANLSTSTIPLF
Sbjct: 301 DIDSQRIIQKLDHKKGRITNLVAVPRSSLLISTSNRKRVLKQFDKYPQPANLSTSTIPLF 360

Query: 361 PSSRPLGENPNLVGFTSASSLNQQIFDMKTEGTSAAIQMKVDTRLQSRMWASRMTKQVME 420
           PSSRPLGENPNLVGFTSA SLNQQIFDMKTEGTSAAIQMKVDTRLQSRMWASRMTKQVME
Sbjct: 361 PSSRPLGENPNLVGFTSAGSLNQQIFDMKTEGTSAAIQMKVDTRLQSRMWASRMTKQVME 420

Query: 421 MNNHLQSQLLDMMQTRLFPKKRKDQRDRVARTREKHPLSFN 446
           MNNHLQS+LLDMMQTRLFPKKRKDQRDRVARTREKHPLSF+
Sbjct: 421 MNNHLQSKLLDMMQTRLFPKKRKDQRDRVARTREKHPLSFH 461

[Close]

BLAST of Cp4.1LG09g09590 vs. ExPASy TrEMBL
Match: A0A6J1K132 (protein ROOT INITIATION DEFECTIVE 3-like OS=Cucurbita maxima OX=3661 GN=LOC111490125 PE=4 SV=1)

HSP 1 Score: 841 bits (2173), Expect = 6.24e-307
Identity = 430/461 (93.28%), Postives = 438/461 (95.01%), Query Frame = 0


Query: 1   MSNVGETMALAVCSDKNMGSGITIWDPKTGETLLHIPTCASPSYGLISLRNEFLVASQTR 60
           MSNVGETMALAVCSDKNMGSGITIWDPKTGETLLHIPTCASPSYGLISLRNEFLVASQTR
Sbjct: 1   MSNVGETMALAVCSDKNMGSGITIWDPKTGETLLHIPTCASPSYGLISLRNEFLVASQTR 60

Query: 61  KEGSVGGGSMFVWSLSKPQSPLRSYPLEPIGPLASTKDGVYLAGGAHSGNIHLWE----- 120
           KEGSVGGGSMFVWSLSKPQSPLRSYPLEPIGPLASTKDGVYLAGGAHSGNIHLWE     
Sbjct: 61  KEGSVGGGSMFVWSLSKPQSPLRSYPLEPIGPLASTKDGVYLAGGAHSGNIHLWEVGSGK 120

Query: 121 ----------PIKFILFSWDDSFLITGSADGMICVWSMISLLDVELVGTAQPMLYCLIEH 180
                     PIKFILFSWDDSFLITGSADGMI VWSMISLLDVELVG+AQP+LY L+EH
Sbjct: 121 LLKLWSGHHKPIKFILFSWDDSFLITGSADGMIFVWSMISLLDVELVGSAQPILYSLMEH 180

Query: 181 KSPLTGLITMSGYSMSMIISSSLDGSLKFWDLMSGMIRGTQGHLEGITEIVLHPTEQFLF 240
           KS LTGLITMSGYSMSMIISSSLDGSLKFWDLMSGMIRGTQ H+EGITEIVLHPTEQFLF
Sbjct: 181 KSSLTGLITMSGYSMSMIISSSLDGSLKFWDLMSGMIRGTQAHVEGITEIVLHPTEQFLF 240

Query: 241 SGTVDGKIFASRLEFGLDNCITIKESQLFASTGHKGAITALAFSQMDLVSASEDCTVCIW 300
           SGTVDGKIFASRLEFGLDNCITIKESQLFASTGHKGAITALAFS MDLVSASEDCTVCIW
Sbjct: 241 SGTVDGKIFASRLEFGLDNCITIKESQLFASTGHKGAITALAFSLMDLVSASEDCTVCIW 300

Query: 301 DIDSQRIIQKLDHKKGRITNLVAFPRSSLLISTSNRKRVLKQFDKYPQPANLSTSTIPLF 360
           DI+SQ IIQKL+HKKGRITNLVA PRSSLLISTSNRKRVLKQFDKYPQPANLSTSTIPLF
Sbjct: 301 DINSQMIIQKLEHKKGRITNLVAVPRSSLLISTSNRKRVLKQFDKYPQPANLSTSTIPLF 360

Query: 361 PSSRPLGENPNLVGFTSASSLNQQIFDMKTEGTSAAIQMKVDTRLQSRMWASRMTKQVME 420
           PSSRPLGENPNL+GFTSA SLNQQIFDMKTEGTSAAIQMKVDTRLQSRMWASRMTKQVME
Sbjct: 361 PSSRPLGENPNLIGFTSAGSLNQQIFDMKTEGTSAAIQMKVDTRLQSRMWASRMTKQVME 420

Query: 421 MNNHLQSQLLDMMQTRLFPKKRKDQRDRVARTREKHPLSFN 446
           MNNHLQSQLLDMMQTRLFPKKRKDQRDRVARTREKHPLSF+
Sbjct: 421 MNNHLQSQLLDMMQTRLFPKKRKDQRDRVARTREKHPLSFH 461

[Close]

BLAST of Cp4.1LG09g09590 vs. ExPASy TrEMBL
Match: A0A0A0LR59 (WD_REPEATS_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G050390 PE=4 SV=1)

HSP 1 Score: 695 bits (1794), Expect = 5.10e-249
Identity = 362/474 (76.37%), Postives = 396/474 (83.54%), Query Frame = 0


Query: 1   MSNVGETMALAVCSDKNMGSGITIWDPKTGETLLHIPTCASPSYGLISLRNEFLVASQTR 60
           M N GE+MALAVCSD+NMG GITIWD KTG+TLLHIPTCASP YG I LRNEF VASQTR
Sbjct: 1   MGNGGESMALAVCSDRNMGLGITIWDVKTGQTLLHIPTCASPPYGFICLRNEFFVASQTR 60

Query: 61  KEGSVGGGSMFVWSLSKPQSPLRSYPLEPIGPLASTKDGVYLAGGAHSGNIHLWE----- 120
           KEGSVGGGS+F+WSL+KP  P+ SY LE IGPLASTKDGVYLAGG HSGNIHLWE     
Sbjct: 61  KEGSVGGGSIFIWSLNKPLPPVTSYTLETIGPLASTKDGVYLAGGTHSGNIHLWEVGSGE 120

Query: 121 ----------PIKFILFSWDDSFLITGSADGMICVWSMISLLDVELVGTAQPMLYCLIEH 180
                     P+K +LFSWDDSFLITGS+DGMICVWSMISLLDVELVG +QP++YCL+EH
Sbjct: 121 LLKLWSGHHKPVKCVLFSWDDSFLITGSSDGMICVWSMISLLDVELVGNSQPIVYCLMEH 180

Query: 181 KSPLTGLITMSGYSMSMIISSSLDGSLKFWDLMSGMIRGTQGHLEGITEIVLHPTEQFLF 240
            S LTGL+TMSG SMS+IISSSLDGSLKFWDLMSGMIRGTQ H+EGIT IVLHPTEQ LF
Sbjct: 181 NSSLTGLLTMSGCSMSIIISSSLDGSLKFWDLMSGMIRGTQAHIEGITAIVLHPTEQVLF 240

Query: 241 SGTVDGKIFASRLEFGLDNCITIKESQLFASTGHKGAITALAFSQMDLVSASEDCTVCIW 300
           SGTVDG+IFASRLEFG DNCITI+E+Q+ A  GHKGAITALAFSQM L+SASEDCTVCI 
Sbjct: 241 SGTVDGQIFASRLEFGFDNCITIRENQILAPKGHKGAITALAFSQMYLISASEDCTVCIR 300

Query: 301 DIDSQRIIQKLDHKKGRITNLVAFPRSSLLISTSNRKRVLKQ-----FDKYPQPANLSTS 360
           DI SQRIIQKLDHKKGRITNLVA PRSSL ISTSNRKRV  Q      DKYPQPANL  S
Sbjct: 301 DISSQRIIQKLDHKKGRITNLVAIPRSSL-ISTSNRKRVSNQSSMSSLDKYPQPANLMKS 360

Query: 361 TIPLFPSSRPLGENPNLVGFTSASSLNQQIFDMKTEGTSAAIQMKVDTRLQSRMWASRMT 420
           TIPLF S +PLGEN N + FTS SSLNQQI DMKTEGTSAAIQMKV+T L+ RMWASRMT
Sbjct: 361 TIPLFSSIQPLGENLNSIRFTSTSSLNQQILDMKTEGTSAAIQMKVETSLERRMWASRMT 420

Query: 421 KQVMEMNNHLQSQLLDMMQTRLFP--------KKRKDQRDRVARTREKHPLSFN 446
           K+VM+MNNHLQS+LLDMM+ RLF         KK+KD+RDRVA+ REK  LSF+
Sbjct: 421 KEVMDMNNHLQSRLLDMMRIRLFEPAKISSSSKKQKDERDRVAKKREKRTLSFH 473

[Close]

BLAST of Cp4.1LG09g09590 vs. ExPASy TrEMBL
Match: A0A5A7UJJ9 (Protein ROOT INITIATION DEFECTIVE 3-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold80G001670 PE=4 SV=1)

HSP 1 Score: 693 bits (1788), Expect = 4.17e-248
Identity = 357/474 (75.32%), Postives = 395/474 (83.33%), Query Frame = 0


Query: 1   MSNVGETMALAVCSDKNMGSGITIWDPKTGETLLHIPTCASPSYGLISLRNEFLVASQTR 60
           M N GE+MALAVCSD+NMG GITIWD KTG+TLLHIP+CASP YG I LRNEF VASQTR
Sbjct: 1   MGNGGESMALAVCSDRNMGLGITIWDVKTGQTLLHIPSCASPPYGFICLRNEFFVASQTR 60

Query: 61  KEGSVGGGSMFVWSLSKPQSPLRSYPLEPIGPLASTKDGVYLAGGAHSGNIHLWE----- 120
           KEGSVGGG++F+WSL+KPQ P+ SY LE IGPLASTKD VYLAGG HSGNIHLWE     
Sbjct: 61  KEGSVGGGTIFIWSLNKPQPPVMSYTLETIGPLASTKDSVYLAGGTHSGNIHLWEVGSGK 120

Query: 121 ----------PIKFILFSWDDSFLITGSADGMICVWSMISLLDVELVGTAQPMLYCLIEH 180
                     P+K +LFSWDDSFLITGS+DGMICVWSMISLLDVELV  +QP++YCL++H
Sbjct: 121 LLKLWSGHHKPVKCVLFSWDDSFLITGSSDGMICVWSMISLLDVELVENSQPLVYCLMQH 180

Query: 181 KSPLTGLITMSGYSMSMIISSSLDGSLKFWDLMSGMIRGTQGHLEGITEIVLHPTEQFLF 240
           KS LTGL+TMSG SMS+IISSSLDGSLKFWDLMSGMI+GTQ H+EGIT IVLHPTEQ LF
Sbjct: 181 KSSLTGLLTMSGCSMSIIISSSLDGSLKFWDLMSGMIKGTQAHIEGITAIVLHPTEQVLF 240

Query: 241 SGTVDGKIFASRLEFGLDNCITIKESQLFASTGHKGAITALAFSQMDLVSASEDCTVCIW 300
           SGTVDG+I ASRLE G DNCIT+KE+Q+ A  GHKGAITALAFSQ DL+SASEDCTVCIW
Sbjct: 241 SGTVDGQISASRLELGFDNCITVKENQILAPKGHKGAITALAFSQTDLISASEDCTVCIW 300

Query: 301 DIDSQRIIQKLDHKKGRITNLVAFPRSSLLISTSNRKRVLKQF-----DKYPQPANLSTS 360
           DI  QRIIQKLDHKKGRITNLVA PRSSL ISTSNRKRVL QF     DKYPQPANL  S
Sbjct: 301 DISRQRIIQKLDHKKGRITNLVAIPRSSL-ISTSNRKRVLNQFSMSSLDKYPQPANLMKS 360

Query: 361 TIPLFPSSRPLGENPNLVGFTSASSLNQQIFDMKTEGTSAAIQMKVDTRLQSRMWASRMT 420
           TIPLF S +PL EN N +GFTS SSLNQQI DMKTEGTSAAIQMKV+T L+ RMWASRMT
Sbjct: 361 TIPLFSSLQPLQENLNSIGFTSTSSLNQQILDMKTEGTSAAIQMKVETSLERRMWASRMT 420

Query: 421 KQVMEMNNHLQSQLLDMMQTRLFP--------KKRKDQRDRVARTREKHPLSFN 446
           KQVM+MNNHLQS++LDMM+ RLF         KK+KD+RDRVA+  EK P SF+
Sbjct: 421 KQVMDMNNHLQSRVLDMMRIRLFEPTKINSSSKKQKDERDRVAKKMEKRPSSFH 473

[Close]

BLAST of Cp4.1LG09g09590 vs. ExPASy TrEMBL
Match: A0A5D3BJZ3 (Protein ROOT INITIATION DEFECTIVE 3-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G004600 PE=4 SV=1)

HSP 1 Score: 692 bits (1785), Expect = 1.19e-247
Identity = 357/474 (75.32%), Postives = 395/474 (83.33%), Query Frame = 0


Query: 1   MSNVGETMALAVCSDKNMGSGITIWDPKTGETLLHIPTCASPSYGLISLRNEFLVASQTR 60
           M N GE+MALAVCSD+NMG GITIWD KTG+TLLHIP+CASP YG I LRNEF VASQTR
Sbjct: 1   MGNGGESMALAVCSDRNMGLGITIWDVKTGQTLLHIPSCASPPYGFICLRNEFFVASQTR 60

Query: 61  KEGSVGGGSMFVWSLSKPQSPLRSYPLEPIGPLASTKDGVYLAGGAHSGNIHLWE----- 120
           KEGSVGGG++F+WSL+KPQ P+ SY LE IGPLASTKD VYLAGG HSGNIHLWE     
Sbjct: 61  KEGSVGGGTIFIWSLNKPQPPVMSYTLETIGPLASTKDSVYLAGGTHSGNIHLWEVGSGK 120

Query: 121 ----------PIKFILFSWDDSFLITGSADGMICVWSMISLLDVELVGTAQPMLYCLIEH 180
                     P+K +LFSWDDSFLITGS+DGMICVWSMISLLDVELV  +QP++YCL++H
Sbjct: 121 LLKLWSGHHKPVKCVLFSWDDSFLITGSSDGMICVWSMISLLDVELVENSQPLVYCLMQH 180

Query: 181 KSPLTGLITMSGYSMSMIISSSLDGSLKFWDLMSGMIRGTQGHLEGITEIVLHPTEQFLF 240
           KS LTGL+TMSG SMS+IISSSLDGSLKFWDLMSGMI+GTQ H+EGIT IVLHPTEQ LF
Sbjct: 181 KSSLTGLLTMSGCSMSIIISSSLDGSLKFWDLMSGMIKGTQAHIEGITAIVLHPTEQVLF 240

Query: 241 SGTVDGKIFASRLEFGLDNCITIKESQLFASTGHKGAITALAFSQMDLVSASEDCTVCIW 300
           SGTVDG+I ASRLE G DNCIT+KE+Q+ A  GHKGAITALAFSQ DL+SASEDCTVCIW
Sbjct: 241 SGTVDGQISASRLELGFDNCITVKENQILAPKGHKGAITALAFSQTDLISASEDCTVCIW 300

Query: 301 DIDSQRIIQKLDHKKGRITNLVAFPRSSLLISTSNRKRVLKQF-----DKYPQPANLSTS 360
           DI  QRIIQKLDHKKGRITNLVA PRSSL ISTSNRKRVL QF     DKYPQPANL  S
Sbjct: 301 DISRQRIIQKLDHKKGRITNLVAIPRSSL-ISTSNRKRVLNQFSMSSLDKYPQPANLMKS 360

Query: 361 TIPLFPSSRPLGENPNLVGFTSASSLNQQIFDMKTEGTSAAIQMKVDTRLQSRMWASRMT 420
           TIPLF S +PL EN N +GFTS SSLNQQI DMKTEGTSAAIQMKV+T L+ RMWASRMT
Sbjct: 361 TIPLFSSLQPLQENLNSIGFTSTSSLNQQILDMKTEGTSAAIQMKVETSLERRMWASRMT 420

Query: 421 KQVMEMNNHLQSQLLDMMQTRLFP--------KKRKDQRDRVARTREKHPLSFN 446
           KQVM+MNNHLQS++LDMM+ RLF         KK+KD+RDRVA+  EK P SF+
Sbjct: 421 KQVMDMNNHLQSRVLDMMRIRLFEPTKINSSSKKQKDERDRVAKKMEKLPSSFH 473

[Close]

BLAST of Cp4.1LG09g09590 vs. TAIR 10
Match: AT3G49180.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 181.8 bits (460), Expect = 1.2e-45
Identity = 139/445 (31.24%), Postives = 220/445 (49.44%), Query Frame = 0


Query: 8   MALAVCSDKNMGSGITIWDPKTGETLLHIPTCASPSYGLISLRNEFLVASQTRKEGSVGG 67
           M + V +  ++  GI  WD KTG   L    CASP++GL ++  +FL +SQ     +   
Sbjct: 1   MEITVIASSSIDEGIGSWDLKTGTEQLQFKPCASPAHGLTAVGEKFLASSQLSARNT--S 60

Query: 68  GSMFVWSLSKPQSPLRSYPLEPIGPLASTKDGVYLAGGAHSGNIHLWE------------ 127
           GS+F WS +KPQ+ ++SYP+EPI  LA+  +G YL GG  SG+I+LWE            
Sbjct: 61  GSIFYWSWTKPQAEVKSYPVEPIKALAANNEGTYLVGGGISGDIYLWEVATGKLLKKWHG 120

Query: 128 ---PIKFILFSWDDSFLITGSADGMICVWSMISLLDVELVGTAQPMLY--CLIEHKSPLT 187
               +  ++FS DDS L++GS DG I VWS+I L D +        LY     EH   +T
Sbjct: 121 HYRSVTCLVFSGDDSLLVSGSQDGSIRVWSLIRLFD-DFQRQQGNTLYEHNFNEHTMSVT 180

Query: 188 GLITMSGYSMSMIISSSLDGSLKFWDLMSGMIRGTQGHLEGITEIVLHPTEQFLFSGTVD 247
            ++   G   ++IISSS D + K W L  G +         I  + L P     ++G  D
Sbjct: 181 DIVIDYGGCNAVIISSSEDRTCKVWSLSRGKLLKNIIFPSVINALALDPGGCVFYAGARD 240

Query: 248 GKIFASRLEFGLDNCITIKESQLFASTGHKG-AITALAFSQMD--LVSASEDCTVCIWDI 307
            KI+      G  N  +   +Q+  S   KG AIT LA+      L+S SED  VC+WD 
Sbjct: 241 SKIY-----IGAINATSEYGTQVLGSVSEKGKAITCLAYCADGNLLISGSEDGVVCVWDP 300

Query: 308 DSQRIIQKLDH----KKGRITNLVAFPRSSLLISTSNRKRVL---------KQFDKYPQP 367
            S R ++ L H    +KG + N+    ++  +++ SN+ +V             +KY +P
Sbjct: 301 KSLRHVRTLIHAKGSRKGPVNNIQIVRKT--IVANSNKTQVSWKSRGALIPPPLEKYERP 360

Query: 368 ANLSTSTIPLFPSSRPLGENPNLVGFTSASSLNQQIFDMKTEGTSAAIQMKVDTRLQSRM 420
              +   I +     P  + P    F SA  +++Q+ +++ +G SAA +M+++ RL+   
Sbjct: 361 VEDTMDGI-VTVDPPPFSDVPVYSSFLSADLIDEQVKELQQQG-SAATEMEME-RLKLEY 420

[Close]

BLAST of Cp4.1LG09g09590 vs. TAIR 10
Match: AT5G25150.1 (TBP-associated factor 5 )

HSP 1 Score: 63.5 bits (153), Expect = 4.8e-10
Identity = 71/308 (23.05%), Postives = 120/308 (38.96%), Query Frame = 0


Query: 61  KEGSVGGGSMFVWSLSKPQS----PLRSYPL-----EPIGPLASTKDGVYLAGGAHSGNI 120
           K G  G G++   + S  QS      RSY L      P+     +  G ++   +    I
Sbjct: 383 KIGQAGSGALQAENDSSDQSIGPNGRRSYTLLLGHSGPVYSATFSPPGDFVLSSSADTTI 442

Query: 121 HLWE---------------PIKFILFSWDDSFLITGSADGMICVWSMISLLDVELVGTAQ 180
            LW                P+    FS    +  + S D    +WSM  +  + ++    
Sbjct: 443 RLWSTKLNANLVCYKGHNYPVWDAQFSPFGHYFASCSHDRTARIWSMDRIQPLRIMAGHL 502

Query: 181 PMLYCLIEHKSPLTGLITMSGYSMSMIISSSLDGSLKFWDLMSG-MIRGTQGHLEGITEI 240
             + C+  H             + + I + S D +++ WD+ +G  +R   GH   +  +
Sbjct: 503 SDVDCVQWHP------------NCNYIATGSSDKTVRLWDVQTGECVRIFIGHRSMVLSL 562

Query: 241 VLHPTEQFLFSGTVDGKIFASRLEFGLDNCITIKESQLFASTGHKGAITALAFSQMD--L 300
            + P  +++ SG  DG I     +     CIT          GH   + +L++S     L
Sbjct: 563 AMSPDGRYMASGDEDGTIM--MWDLSTARCIT-------PLMGHNSCVWSLSYSGEGSLL 622

Query: 301 VSASEDCTVCIWDIDSQRIIQKLDHKKG---RITNLVAFPRSSLLIST--SNRKRVLKQF 337
            S S DCTV +WD+ S   + K + K G   R+ +L  FP  S  +     +R+ +L   
Sbjct: 623 ASGSADCTVKLWDVTSSTKLTKAEEKNGNSNRLRSLRTFPTKSTPVHALRFSRRNLLFAA 669

[Close]

BLAST of Cp4.1LG09g09590 vs. TAIR 10
Match: AT3G49660.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 63.2 bits (152), Expect = 6.3e-10
Identity = 64/258 (24.81%), Postives = 113/258 (43.80%), Query Frame = 0


Query: 90  IGPLASTKDGVYLAGGAHSGNIHLWEP-----IKFIL----------FSWDDSFLITGSA 149
           I  +A + D  ++   +    + LW+      IK ++          F+   + +++GS 
Sbjct: 74  ISDVAFSSDARFIVSASDDKTLKLWDVETGSLIKTLIGHTNYAFCVNFNPQSNMIVSGSF 133

Query: 150 DGMICVWSMISLLDVELVGTAQPMLYCLIEHKSPLTGL-ITMSGYSMSMIISSSLDGSLK 209
           D  + +W +          T    L  L  H  P+T +     G   S+I+SSS DG  +
Sbjct: 134 DETVRIWDV----------TTGKCLKVLPAHSDPVTAVDFNRDG---SLIVSSSYDGLCR 193

Query: 210 FWDLMSGMIRGTQGHLEG--ITEIVLHPTEQFLFSGTVDGKIFASRLEFGLDNCITIKES 269
            WD  +G    T    E   ++ +   P  +F+  GT+D  +        L N  + K  
Sbjct: 194 IWDSGTGHCVKTLIDDENPPVSFVRFSPNGKFILVGTLDNTL-------RLWNISSAKFL 253

Query: 270 QLFASTGHKGA--ITALAFSQMD---LVSASEDCTVCIWDIDSQRIIQKLDHKKGRITNL 325
           + +  TGH  A    + AFS  +   +VS SED  V +W+++S++++QKL+     + N+
Sbjct: 254 KTY--TGHVNAQYCISSAFSVTNGKRIVSGSEDNCVHMWELNSKKLLQKLEGHTETVMNV 309

[Close]

BLAST of Cp4.1LG09g09590 vs. TAIR 10
Match: AT4G02730.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 56.6 bits (135), Expect = 5.9e-08
Identity = 56/255 (21.96%), Postives = 105/255 (41.18%), Query Frame = 0


Query: 90  IGPLASTKDGVYLAGGAHSGNIHLWEP----------------IKFILFSWDDSFLITGS 149
           I  LA + D  Y    +    + +W+                 +  + F+   + +++GS
Sbjct: 88  ISDLAWSSDSHYTCSASDDCTLRIWDARSPYECLKVLRGHTNFVFCVNFNPPSNLIVSGS 147

Query: 150 ADGMICVWSMISLLDVELVGTAQPMLYCLIEHKSPLTGL-ITMSGYSMSMIISSSLDGSL 209
            D  I +W + +   V ++            H  P++ +     G   S+I+S+S DGS 
Sbjct: 148 FDETIRIWEVKTGKCVRMIKA----------HSMPISSVHFNRDG---SLIVSASHDGSC 207

Query: 210 KFWDLMSGMIRGT--QGHLEGITEIVLHPTEQFLFSGTVDGKIFASRLEFGLDNCITIKE 269
           K WD   G    T        ++     P  +F+   T+D  +        L N  T K 
Sbjct: 208 KIWDAKEGTCLKTLIDDKSPAVSFAKFSPNGKFILVATLDSTL-------KLSNYATGKF 267

Query: 270 SQLFASTGHKGAITAL--AFSQMD---LVSASEDCTVCIWDIDSQRIIQKLDHKKGRITN 321
            +++  TGH   +  +  AFS  +   +VS SED  V +WD+ ++ I+Q+L+     + +
Sbjct: 268 LKVY--TGHTNKVFCITSAFSVTNGKYIVSGSEDNCVYLWDLQARNILQRLEGHTDAVIS 320

[Close]

BLAST of Cp4.1LG09g09590 vs. TAIR 10
Match: AT4G32990.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 53.1 bits (126), Expect = 6.5e-07
Identity = 48/172 (27.91%), Postives = 76/172 (44.19%), Query Frame = 0


Query: 132 GSADGMICVWSMISLLDVELVGTAQPMLYCLIEHKSPLTGLITMSGYSMSMIISSSLDGS 191
           GS DG  CVW        E   T    +  L  H+S +  +   +  S S++ +   D S
Sbjct: 66  GSFDGNTCVW--------ENFATDSESVSVLRGHESEVKSVSWNA--SGSLLATCGRDKS 125

Query: 192 LKFWDLMS------GMIRGTQGHLEGITEIVLHPTEQFLFSGTVDG--KIFASRLEFGLD 251
           +  W++          I    GH E +  ++ HPT   LFS + D   KI+ S  E G  
Sbjct: 126 VWIWEIQPEEDDEFDTIAVLTGHSEDVKMVLWHPTMDVLFSCSYDNTIKIWCSEDEDGDY 185

Query: 252 NCI-TIKESQLFASTGHKGAITALAFSQM--DLVSASEDCTVCIWDIDSQRI 293
           NC+ T+ E     + GH   + +++F+     +V+ S+D  V IW  D  R+
Sbjct: 186 NCVQTLSE----LNNGHSSTVWSISFNAAGDKMVTCSDDLAVKIWKTDISRM 223

The following BLAST results are available for this feature:

BLAST of Cp4.1LG09g09590 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M3B4	1.7e-44	31.24	Protein ROOT INITIATION DEFECTIVE 3 OS=Arabidopsis thaliana OX=3702 GN=RID3 PE=1...	[more]
A0A1L8HX76	1.6e-26	28.96	WD repeat-containing protein 18 OS=Xenopus laevis OX=8355 GN=wdr18 PE=3 SV=1	[more]
Q68EI0	7.0e-22	26.16	WD repeat-containing protein 18 OS=Danio rerio OX=7955 GN=wdr18 PE=2 SV=1	[more]
Q3SZD4	1.0e-20	26.22	WD repeat-containing protein 18 OS=Bos taurus OX=9913 GN=WDR18 PE=2 SV=1	[more]
Q9BV38	7.2e-19	26.44	WD repeat-containing protein 18 OS=Homo sapiens OX=9606 GN=WDR18 PE=1 SV=2	[more]

BLAST of Cp4.1LG09g09590 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023542664.1	0.0	96.75	protein ROOT INITIATION DEFECTIVE 3-like [Cucurbita pepo subsp. pepo]	[more]
KAG7012309.1	1.27e-313	94.79	Protein ROOT INITIATION DEFECTIVE 3 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022954958.1	5.13e-313	94.58	protein ROOT INITIATION DEFECTIVE 3-like [Cucurbita moschata]	[more]
KAG6573122.1	1.21e-311	94.36	Protein ROOT INITIATION DEFECTIVE 3, partial [Cucurbita argyrosperma subsp. soro...	[more]
XP_022994395.1	1.29e-306	93.28	protein ROOT INITIATION DEFECTIVE 3-like [Cucurbita maxima]	[more]

BLAST of Cp4.1LG09g09590 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GSK9	2.48e-313	94.58	protein ROOT INITIATION DEFECTIVE 3-like OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1K132	6.24e-307	93.28	protein ROOT INITIATION DEFECTIVE 3-like OS=Cucurbita maxima OX=3661 GN=LOC11149...	[more]
A0A0A0LR59	5.10e-249	76.37	WD_REPEATS_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G...	[more]
A0A5A7UJJ9	4.17e-248	75.32	Protein ROOT INITIATION DEFECTIVE 3-like isoform X2 OS=Cucumis melo var. makuwa ...	[more]
A0A5D3BJZ3	1.19e-247	75.32	Protein ROOT INITIATION DEFECTIVE 3-like isoform X2 OS=Cucumis melo var. makuwa ...	[more]

BLAST of Cp4.1LG09g09590 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G49180.1	1.2e-45	31.24	Transducin/WD40 repeat-like superfamily protein	[more]
AT5G25150.1	4.8e-10	23.05	TBP-associated factor 5	[more]
AT3G49660.1	6.3e-10	24.81	Transducin/WD40 repeat-like superfamily protein	[more]
AT4G02730.1	5.9e-08	21.96	Transducin/WD40 repeat-like superfamily protein	[more]
AT4G32990.1	6.5e-07	27.91	Transducin/WD40 repeat-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR020472	G-protein beta WD-40 repeat	PRINTS	PR00320	GPROTEINBRPT	coord: 183..197 score: 35.67 coord: 129..143 score: 34.74 coord: 273..287 score: 37.37
IPR001680	WD40 repeat	SMART	SM00320	WD40_4	coord: 198..237 e-value: 30.0 score: 7.7 coord: 107..142 e-value: 0.16 score: 21.1 coord: 155..196 e-value: 0.71 score: 17.9 coord: 249..286 e-value: 8.2E-6 score: 35.3 coord: 289..329 e-value: 47.0 score: 6.4
IPR001680	WD40 repeat	PFAM	PF00400	WD40	coord: 257..286 e-value: 8.7E-4 score: 20.1 coord: 121..142 e-value: 0.21 score: 12.5
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 181..205 score: 8.570195
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 256..295 score: 12.279615
IPR015943	WD40/YVTN repeat-like-containing domain superfamily	GENE3D	2.130.10.10		coord: 147..339 e-value: 2.9E-25 score: 90.9
IPR015943	WD40/YVTN repeat-like-containing domain superfamily	GENE3D	2.130.10.10		coord: 4..145 e-value: 1.4E-10 score: 42.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 423..446
None	No IPR available	PANTHER	PTHR18763:SF4	PROTEIN ROOT INITIATION DEFECTIVE 3-LIKE	coord: 8..437
None	No IPR available	PANTHER	PTHR18763	WD-REPEAT PROTEIN 18	coord: 8..437
None	No IPR available	PROSITE	PS50294	WD_REPEATS_REGION	coord: 256..289 score: 9.414692
IPR019775	WD40 repeat, conserved site	PROSITE	PS00678	WD_REPEATS_1	coord: 273..287
IPR019775	WD40 repeat, conserved site	PROSITE	PS00678	WD_REPEATS_1	coord: 183..197
IPR036322	WD40-repeat-containing domain superfamily	SUPERFAMILY	50978	WD40 repeat-like	coord: 88..323
IPR036322	WD40-repeat-containing domain superfamily	SUPERFAMILY	50978	WD40 repeat-like	coord: 10..116

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG09g09590.1	Cp4.1LG09g09590.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030174	regulation of DNA-dependent DNA replication initiation
biological_process	GO:0006364	rRNA processing
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005656	nuclear pre-replicative complex
cellular_component	GO:0097344	Rix1 complex
molecular_function	GO:0005515	protein binding