Cp4.1LG09g08280 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG09g08280
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Unknown protein
Location	Cp4.1LG09: 7583124 .. 7588075 (-)
RNA-Seq Expression	Cp4.1LG09g08280
Synteny	Cp4.1LG09g08280

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCGCAGTGCGCAAATCCGATCGTGTGCGCACCGGAGAGTACAACGAGGTCATCGCTTGATAGACCTTTGGAATTGAAGAGTTTGAGAAGCTGATCAACGGTGGAGTTTGCTTGCGGCAGATTGGAACCTACTCTGGCCGCCATTGATATCTTCCCGTCCCATCGTCCCTTCTTCACCTGGTAATACGGTCCTCCTGCCTGCAATTTTCAATAATTCAGAAATTATTTTATTACATGAAAATGTTAGGACTGAAATTACTTTTTCACCCCTAGGCAACAGATGCTGACAGGCCTCATAAATGGAGATAAATTAACAGAAACTAATTTAAATTCGTTCATGCTGTCTTCCATGTACAACGCAAACACATTGATGATTATTAACTAAAGCATCATAGAAAAGAGGAATACAAGATTAAATAATGGAGGTTTAGCAAAGGACAAATTAGTAGTAAACCGATATTGTAGATGAAAATTTAAAAAGTTAATCACATGGAACTTTGATCCATTGCTTTGGTTTTTGCTTATTATGATTTGGATCTATTGTTCGCCTAGTTGCAATTTCCATAACAGTAGCCAATTTTATTTCTATTGATGTTCTATTGAATATAATTATATAACCATCTAAGTTTTGATTTTATGTATGAGTTTCATAAACTGGGGCTGTGTCAGAATCTGACTATAGAGAAATGGATTTTCATATGAGCTGGAAAATGGGGAAGCTGAAAAGACAAACTTTTATCTACATTTTGAGGCTGTGGACAAGTATTGGATCCCCATTAATAAACATTTACAGGCCAATAATAAACAGAAGCATCTCCTTGTCATTTTGGATTCTTCTATGCCCAGGTTTTCTAATCAAACAATGGAGAAAATGGCAAAAGTGGAAGGAAAATTTTCTAGGATTTTGGGAATTCATTATGATACTGTTGAATATGTATTTTCTTTTCCCTTGATGTAACCCATCTTTCACTTTTTTTAAGCAGAATGGTTACAATGCAAATCCAATGTCAAATTATTGTTCCAACTTTCAAACACCATTTATTGGCTTTTGCTTAAAATTTTCTATGTTTATGCAGAAAAATGACCAGATTTCTTTGAATCAAGAGAAGGGCTCTAACCAAATGGACAAAATCTCTGGCTGCAATTGCGAGGATGTCAGCACAAGACACAACGCCAGGGCACTTGCTCTCAACCAACGCTTTGGCCTTCTTGATGCTTTCAAACCCCTCCGGTCTCAGCCCCTTGTTGTCCGCTGCATCCTTCTCCGCTGCCACTTTGCTGCCAGGCTTCGTCGATATCAGAATCGACCCATCACAGCCCTGCCATTTTCAAGAGCTTCTCAACATTTTTCAAACACAACCAGGTAATTGAAATTGATTGCAGAATGCATGCAGTATAAAAGTGTATGATTCTATATGTGGGGTAATGGGGTTCCAATTTTTCTTACTTCTACAAAGCAATCATGAAAGAACAGGCGAAGTGTTGCTGGAGCTGAGACTGGTGCGTCTCTGAACTGTTGGGTGGTGATTGAGGAGACGAGTTGCTCGAGGTGAGGGCATGTTTTGGTGTAGTAGTCGACAGAGAGGAGGCGGTGGCGGCGGGCGGGGGCCTTTTTAGGTGCTGGTGTTGCAGCACATTCTGATGGTGTGATGAAAATGAGAAGCAGAGTGAGAAAACAGAGGGGAGAGAGAGGGGAAGAAGAAGAAGATAAAGAAGAGACAGGCATGACTGAGTGTGAGAGTGAAGGAAGGGGCACCTTAGGACAAAGAAGGAATAGTGGAAAGAAGAATATAAAAGGGGAAGACCCCAGGAGTTGAAGTTGTTGGAGGACAGATTGCTGTGAAGAAAAAAGGGGAGAATCAAGACCCGTGAAACCCAATTCTTATGGCAAAAAGCTAGAGAGAGAAACGACCAACAGGCCAATAAAAAAGCTGGTGAGAGAGAGAGAGAGAGAGAAATATTTTAATATAATTATATGATATTATATTGTTTCTAGGTACTGGGGAGTACTGGTACCAAAAATTATATTTTGTGTTTGATTATGATATTGTAGGTGGGTCTGGGGGTCAAATGAAGACCATTCAGTAGCATCTAGAGGGCACCAATTTGGTACCAAAATCTCATTTTCACCTCTCATTTATAGGCATAAAATATATAGCAAATAATCAATTATAGGAACAAGAACAGGGGATTGGCTTATTGTCTAATTTAATAGAAGGAAATTGCTAAATCTTGCCAATATTTATCCTTATTTCATTACTGCAGTTACTACCTGTTCTGTGTTTGTAATTTTTTTCTGGTGAATACCTTTTATTACTAAAATCTGTATGTACTTTAAATCGTTGCATTTATCTTTGCAGTTTGGTATAAAATTTGGCAGCCACTGAAAACAATGAAATAAATTGAAGGCTGATAAAAGCTGATAGAGAGAGAGCGTGGTGGACAGAAGGGCGTGTAATAAGCCAAGCCAAGCATGAGTAATGAACTTCATAAATGCAAGGCATGTGCTACCACAGGTGCCTCACTCACTTCTCTTTACCTCATTTTTCCTACTCATATCAATGTCACCCACCATTTTTCATCCCCCACTTTAGTGTCAAATTGAAACAACCGTCCATCATATTTCTATGTTGATACGGTCATATTTACTTTATTCCATGTGCATAAAGATGTCGTTTCTATTTGTATATTCAGTATTTTCTCTACTTTTAACTGACTTGAGGCCATACCTGATATGAACTAAGTATGAAGTGAAGGAGACGCGAATATTTTCGATGTTGGTTAGAATGTAGAGTAAATATTGGGTGAGGACAATATGTTTATTGGTTTCATTGAGACTTTCTTAAGTAGAGATCGAGTTTGAGTTCAGCTCTAAAATTAACAACTAATTCATCGGTCTAAGAACTTGTGAGATCCTATATCGATTAAAGAGAGTAACAAGTGTCAGCAAGGATGATGGGCCCCAAAGAGGAGTGGATTGTGAGATCCCACATTAGTTGGGAGGAGAACGAAGCATTCTTTATGAGGGTGTAGAAACCTCTTCCTAGTAGATACATTTTAAAAACTTTGAGGGGAAGTCCGAAAGGAAAAGCTCAATTGGATCGAAATAAATCACCTTGAGGGGAAGGACAATATCTACTAACCATGAGCGAACTCCTTAATAACCTTATGATGTTGGTGCTAACTCGATAAGTGTAGAAGGAGAAAAATTACTTGAAATTCACTGGCATCCATTCAATTGGATTGAAATAGATCACTACAGATAATCGCAGCCTCGTGGGTGGAGAATATTTTTTCTTGTTTTACATTTGTGGAAAAGGCTGAAGAGGTGATGCTAGTGAAACTTAATAGCTGAAAGGACCATTTGTCTCTCTCACTCCCTCATTCCTCGTGGCCTTTTGAATTGGTACCACAAAATTTATGGATCTGTAAAAGCAGTAATGAAAGCAACCCAGAACAAAAGGTCAGTGTTTTTTCCCAGTGGCAAAGCACTTGATATAATAATGTTACAATAAATAACCTTTTGGATTATTAATTGGTTGATGAGGGGCCACTATGGCTTTGGCTTTGGCTTGCCAGTCATCACTAAACATAGGGTCCCTGGAAACATATCAGAACCATCGGTACAATCTAATAATTGTTTCATACCTAACAAAATTCTAACTTTTAAAACTAATTTTAACTTCTTTTGCATTTTATATTTCTAAGATTTAAATTCGGTGTATTTTATTTTTATTTTCTATTGAGTTTATTAACAATTTACTTTGTGACTCATTCTTTTGATTGATCGTTTTTTTAGACGTTGATCAAATTATTACAGGTACTCTCTAGTTGTAGCACAGGGCAAAATAAGCTGCAGGAGGATTGTACTAACATGCCGCCAGTGACTTTCTCAAGGCTCCGTATGAGAAGAAAGAAGGTATGGGGAAAATTTGTAATGAAGTGAAATCCCCCTTTCTTTATAGTATTGTCCGTCCCCTTCTTCATTCGTTTAAGTTCTTCATTCATCCATTTAGGTTCTCCATATCTTGGTATAACTGTAATGATCCAGATCTACCGCTAGCCGATATTGTTCTTTTTGAGCTTTTCCTTTTAGGTTTCTCCTCAAGGCTTTAAAACGCGTCTTTTAGGGGAAGGTTTCCACACCCTTATAAATGGTGTTTTGTTCTCTTCCCTAACCAATGTGGGACATCACAATAACTATCCCAACAAAGTAATCTTATGTAGAATGCCACAAGAGCCCTTTAACCCGACTTCTGCACTAGAACAAACAAATCATGTCTCTCTTTTTGAGAGACACCGAAAAAAAAAGCAAAAGCCAATAGTGGAGCACCTCATCGAGATTAGTTGGACACTAATTATCATTTTAAGAGTCAATAGTCCAATATTATGATCAAGAGCCCTTTAACTCGATTTCTGCACTAGAACAAACAAATAATGTCTCTCTTTTTTAGAGACATCGAAAAAAAGCATAAGCCAATAGTAGAGCACCTTCATCGAGATTAGTTAGACACTAATTATCATTTCAAGAGTCGATAATCCAATATTACGATGATTTAGGGAGAAAATAGTTTGAATAGGGAAATTGTAGCATTTGTGAGTGGCAGACATATTCAGCATCAGCTTTCCATAGTGGCAACAGAATTGAGGACAAAATGTGAAACAAAGAATCCAGTGCTTGCAGAAGGGATAAATCCAACATTTGCATATTTCAGAAAAGGATTTAATTACATTATAATATGATGATTATTCATTAAACAACATTAAATTCTGCTGTTATGTTTTTTTTGTCAGTCTCTGTGTTTTTAGTCTGCAGTCATTCCACTGAAAACCGTTCGAGTACTTTGATGCTTCAAAAGTCAGAATTGCTTAGTTTCAAAGATTTTGAAGTTTGGAAGAACATGGTGAAGAGTGGCACAGCCGTTCATGAGATTCCCCACCCCAATTAA

mRNA sequence

ATGCTCGCAAAAAATGACCAGATTTCTTTGAATCAAGAGAAGGGCTCTAACCAAATGGACAAAATCTCTGGCTGCAATTGCGAGGATGTCAGCACAAGACACAACGCCAGGGCACTTGCTCTCAACCAACGCTTTGGCCTTCTTGATGCTTTCAAACCCCTCCGGTCTCAGCCCCTTGTTGTCCGCTGCATCCTTCTCCGCTGCCACTTTGCTGCCAGGCTTCGTCGATATCAGAATCGACCCATCACAGCCCTGCCATTTTCAAGAGCTTCTCAACATTTTTCAAACACAACCAGGCGAAGTGTTGCTGGAGCTGAGACTGGTGCGTCTCTGAACTGTTGGGTGTCGACAGAGAGGAGGCGGTGGCGGCGGGCGGGGGCCTTTTTAGGTGCTGGTGTTGCAGCACATTCTGATGGTGTGATGAAAATGAGAAGCAGAGTGAGAAAACAGAGGGGAGAGAGAGGGGAAGAAGAAGAAGATAAAGAAGAGACAGGCATGACTGAGTGTGAGAGTGAAGGAAGGGGCACCTTAGGACAAAGAAGGAATAGTGGAAAGAAGAATATAAAAGGGGAAGACCCCAGGATCTGCAGTCATTCCACTGAAAACCGTTCGAGTACTTTGATGCTTCAAAAGTCAGAATTGCTTAGTTTCAAAGATTTTGAAGTTTGGAAGAACATGGTGAAGAGTGGCACAGCCGTTCATGAGATTCCCCACCCCAATTAA

Coding sequence (CDS)

ATGCTCGCAAAAAATGACCAGATTTCTTTGAATCAAGAGAAGGGCTCTAACCAAATGGACAAAATCTCTGGCTGCAATTGCGAGGATGTCAGCACAAGACACAACGCCAGGGCACTTGCTCTCAACCAACGCTTTGGCCTTCTTGATGCTTTCAAACCCCTCCGGTCTCAGCCCCTTGTTGTCCGCTGCATCCTTCTCCGCTGCCACTTTGCTGCCAGGCTTCGTCGATATCAGAATCGACCCATCACAGCCCTGCCATTTTCAAGAGCTTCTCAACATTTTTCAAACACAACCAGGCGAAGTGTTGCTGGAGCTGAGACTGGTGCGTCTCTGAACTGTTGGGTGTCGACAGAGAGGAGGCGGTGGCGGCGGGCGGGGGCCTTTTTAGGTGCTGGTGTTGCAGCACATTCTGATGGTGTGATGAAAATGAGAAGCAGAGTGAGAAAACAGAGGGGAGAGAGAGGGGAAGAAGAAGAAGATAAAGAAGAGACAGGCATGACTGAGTGTGAGAGTGAAGGAAGGGGCACCTTAGGACAAAGAAGGAATAGTGGAAAGAAGAATATAAAAGGGGAAGACCCCAGGATCTGCAGTCATTCCACTGAAAACCGTTCGAGTACTTTGATGCTTCAAAAGTCAGAATTGCTTAGTTTCAAAGATTTTGAAGTTTGGAAGAACATGGTGAAGAGTGGCACAGCCGTTCATGAGATTCCCCACCCCAATTAA

Protein sequence

MLAKNDQISLNQEKGSNQMDKISGCNCEDVSTRHNARALALNQRFGLLDAFKPLRSQPLVVRCILLRCHFAARLRRYQNRPITALPFSRASQHFSNTTRRSVAGAETGASLNCWVSTERRRWRRAGAFLGAGVAAHSDGVMKMRSRVRKQRGERGEEEEDKEETGMTECESEGRGTLGQRRNSGKKNIKGEDPRICSHSTENRSSTLMLQKSELLSFKDFEVWKNMVKSGTAVHEIPHPN

Homology

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BLAST of Cp4.1LG09g08280 vs. NCBI nr
Match: KAG7012461.1 (hypothetical protein SDJN02_25213, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 326 bits (836), Expect = 3.07e-110
Identity = 176/210 (83.81%), Postives = 178/210 (84.76%), Query Frame = 0


Query: 4   KNDQISLNQEKGSNQMDKISGCNCEDVSTRHNARALALNQRFGLLDAFKPLRSQPLVVRC 63
           KNDQI LNQEKGSNQMDKISGCNCEDVSTRHNARALALNQR GLLDAFKPLRSQPLVVRC
Sbjct: 18  KNDQIFLNQEKGSNQMDKISGCNCEDVSTRHNARALALNQRLGLLDAFKPLRSQPLVVRC 77

Query: 64  ILLRCHFAARLRRYQNRPITALPFSRASQHFSNTTR----RSVAGA-------------- 123
           ILLRCHFAARLRRYQNRPITALPFSRASQHFSNTT      S+ G               
Sbjct: 78  ILLRCHFAARLRRYQNRPITALPFSRASQHFSNTTSIKVYDSICGVMGFQFFLLLQSNHE 137

Query: 124 -ETGASLNCWVSTERRRWRRAGAFLGAGVAAHSDGVMKMRSRVRKQRGERGEEEEDKEET 183
              G  L   +STERRRWRRAGAFLGAGVAAHSDGVMKMRSRVRKQRGERGEEEEDKEET
Sbjct: 138 RTGGVLLELRLSTERRRWRRAGAFLGAGVAAHSDGVMKMRSRVRKQRGERGEEEEDKEET 197

Query: 184 GMTECESEGRGTLGQRRNSGKKNIKGEDPR 194
           GMTECESEGRGTLGQRRNSGKKNIKGEDPR
Sbjct: 198 GMTECESEGRGTLGQRRNSGKKNIKGEDPR 227

The following BLAST results are available for this feature:

BLAST of Cp4.1LG09g08280 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG09g08280 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7012461.1	3.07e-110	83.81	hypothetical protein SDJN02_25213, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Cp4.1LG09g08280 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG09g08280 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 144..205
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 144..158
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 184..198

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG09g08280.1	Cp4.1LG09g08280.1	mRNA