Cp4.1LG09g08040 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG09g08040
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	DUF4228 domain-containing protein
Location	Cp4.1LG09: 7468012 .. 7468515 (+)
RNA-Seq Expression	Cp4.1LG09g08040
Synteny	Cp4.1LG09g08040

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAAACAGCATAAGATGTTGCATTTCTTGCATTTTACCATGCGGAGCTCTGGATGTGATTCGCATAGTTCACTCCAATGGCTTCGTTCAAGAAATCACCGGCTCCGTCAGAGCTTCCGACGTCATCAAATCCCATCCCAAACACGTCCTTAAAAAGCCCTCTTCCCCCTTTTCCGCCGCCGCCTCCACCGCCGCCGTCGTCCCGCCGGAAGCTGAGTTCCAACGCGGTAAGATTTACTTCCTCATGCCGCTCCCTCCCAACTCAGACAAAGCCCGTTCGCGATCCTCCGCCGGAAGAAAGAAGAGAGATATTGCTAATAACAACAGTACCACTCATCACTCCGACCGATCCGCCGCCGAAACCAATCTCCTCCTTTCCGATCAGTACCTCTCGGAAATACTCTCCGAGAAGGTTTCCACCCACCGCGAACGGCGGCGCGGTCGTATCGGCGTTTGGAGGCCTCACTTACAGAGTATTTGCGAGTCGCCCGGTTCTATCTAA

mRNA sequence

ATGAAAAACAGCATAAGATGTTGCATTTCTTGCATTTTACCATGCGGAGCTCTGGATGTGATTCGCATAGTTCACTCCAATGGCTTCGTTCAAGAAATCACCGGCTCCGTCAGAGCTTCCGACGTCATCAAATCCCATCCCAAACACGTCCTTAAAAAGCCCTCTTCCCCCTTTTCCGCCGCCGCCTCCACCGCCGCCGTCGTCCCGCCGGAAGCTGAGTTCCAACGCGGTAAGATTTACTTCCTCATGCCGCTCCCTCCCAACTCAGACAAAGCCCGTTCGCGATCCTCCGCCGGAAGAAAGAAGAGAGATATTGCTAATAACAACAGTACCACTCATCACTCCGACCGATCCGCCGCCGAAACCAATCTCCTCCTTTCCGATCAGTACCTCTCGGAAATACTCTCCGAGAAGGTTTCCACCCACCGCGAACGGCGGCGCGGTCGTATCGGCGTTTGGAGGCCTCACTTACAGAGTATTTGCGAGTCGCCCGGTTCTATCTAA

Coding sequence (CDS)

ATGAAAAACAGCATAAGATGTTGCATTTCTTGCATTTTACCATGCGGAGCTCTGGATGTGATTCGCATAGTTCACTCCAATGGCTTCGTTCAAGAAATCACCGGCTCCGTCAGAGCTTCCGACGTCATCAAATCCCATCCCAAACACGTCCTTAAAAAGCCCTCTTCCCCCTTTTCCGCCGCCGCCTCCACCGCCGCCGTCGTCCCGCCGGAAGCTGAGTTCCAACGCGGTAAGATTTACTTCCTCATGCCGCTCCCTCCCAACTCAGACAAAGCCCGTTCGCGATCCTCCGCCGGAAGAAAGAAGAGAGATATTGCTAATAACAACAGTACCACTCATCACTCCGACCGATCCGCCGCCGAAACCAATCTCCTCCTTTCCGATCAGTACCTCTCGGAAATACTCTCCGAGAAGGTTTCCACCCACCGCGAACGGCGGCGCGGTCGTATCGGCGTTTGGAGGCCTCACTTACAGAGTATTTGCGAGTCGCCCGGTTCTATCTAA

Protein sequence

MKNSIRCCISCILPCGALDVIRIVHSNGFVQEITGSVRASDVIKSHPKHVLKKPSSPFSAAASTAAVVPPEAEFQRGKIYFLMPLPPNSDKARSRSSAGRKKRDIANNNSTTHHSDRSAAETNLLLSDQYLSEILSEKVSTHRERRRGRIGVWRPHLQSICESPGSI

Homology

[Close]

BLAST of Cp4.1LG09g08040 vs. NCBI nr
Match: XP_023542170.1 (uncharacterized protein LOC111802134 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 329 bits (844), Expect = 1.20e-113
Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 0


Query: 1   MKNSIRCCISCILPCGALDVIRIVHSNGFVQEITGSVRASDVIKSHPKHVLKKPSSPFSA 60
           MKNSIRCCISCILPCGALDVIRIVHSNGFVQEITGSVRASDVIKSHPKHVLKKPSSPFSA
Sbjct: 1   MKNSIRCCISCILPCGALDVIRIVHSNGFVQEITGSVRASDVIKSHPKHVLKKPSSPFSA 60

Query: 61  AASTAAVVPPEAEFQRGKIYFLMPLPPNSDKARSRSSAGRKKRDIANNNSTTHHSDRSAA 120
           AASTAAVVPPEAEFQRGKIYFLMPLPPNSDKARSRSSAGRKKRDIANNNSTTHHSDRSAA
Sbjct: 61  AASTAAVVPPEAEFQRGKIYFLMPLPPNSDKARSRSSAGRKKRDIANNNSTTHHSDRSAA 120

Query: 121 ETNLLLSDQYLSEILSEKVSTHRERRRGRIGVWRPHLQSICESPGSI 167
           ETNLLLSDQYLSEILSEKVSTHRERRRGRIGVWRPHLQSICESPGSI
Sbjct: 121 ETNLLLSDQYLSEILSEKVSTHRERRRGRIGVWRPHLQSICESPGSI 167

[Close]

BLAST of Cp4.1LG09g08040 vs. NCBI nr
Match: KAG6583958.1 (hypothetical protein SDJN03_19890, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 248 bits (634), Expect = 3.35e-81
Identity = 129/197 (65.48%), Postives = 148/197 (75.13%), Query Frame = 0


Query: 1   MKNSIRCCISCILPCGALDVIRIVHSNGFVQEITGSVRASDVIKSHPKHVLKKPSSPFSA 60
           M+NSIRCCISCILPCGALDVIRIVHSNG+V+EI+GS++ASDV+K+HPKHVLKKPSSP S+
Sbjct: 1   MRNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSSPSSS 60

Query: 61  AAST--------AAVVPPEAEFQRGKIYFLMPLPPNSDKARSRSSAGRKKRDIANNNSTT 120
           AA +          +VPPEA+ QRGKIYFLMPLPPN DK RSRSS+ RKKR   NNN   
Sbjct: 61  AACSDDASALPKIVIVPPEADLQRGKIYFLMPLPPNPDKPRSRSSSRRKKRVTNNNNKNN 120

Query: 121 HHSDR----------------------SAAETNLLLSDQYLSEILSEKVSTHRERRRGRI 167
           HHSDR                      S + +NLL+SDQYLSEILSEK STHRERRRGR+
Sbjct: 121 HHSDRTPPAAASATADSDDDDNNNNNNSISMSNLLVSDQYLSEILSEKASTHRERRRGRV 180

[Close]

BLAST of Cp4.1LG09g08040 vs. NCBI nr
Match: KAG7019577.1 (hypothetical protein SDJN02_18538, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 247 bits (631), Expect = 1.06e-80
Identity = 129/200 (64.50%), Postives = 148/200 (74.00%), Query Frame = 0


Query: 1   MKNSIRCCISCILPCGALDVIRIVHSNGFVQEITGSVRASDVIKSHPKHVLKKPSSPFSA 60
           M+NSIRCCISCILPCGALDVIRIVHSNG+V+EI+GS++ASDV+K+HPKHVLKKPSSP S+
Sbjct: 1   MRNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSSPSSS 60

Query: 61  AAST--------AAVVPPEAEFQRGKIYFLMPLPPNSDKARSRSSAGRKKRDIANNNSTT 120
           AA +          +VPPEA+ QRGKIYFLMPLPPN DK RSRSS+ RKKR   NNN   
Sbjct: 61  AACSDDASALPKIVIVPPEADLQRGKIYFLMPLPPNPDKPRSRSSSRRKKRVTNNNNKNN 120

Query: 121 HHSDR-------------------------SAAETNLLLSDQYLSEILSEKVSTHRERRR 167
           HHSDR                         S + +NLL+SDQYLSEILSEK STHRERRR
Sbjct: 121 HHSDRTPPAAASAAASATADSDDDNNNNNNSISMSNLLVSDQYLSEILSEKASTHRERRR 180

[Close]

BLAST of Cp4.1LG09g08040 vs. NCBI nr
Match: XP_023001645.1 (rhoGEF domain-containing protein gxcI-like [Cucurbita maxima])

HSP 1 Score: 244 bits (623), Expect = 1.69e-79
Identity = 128/199 (64.32%), Postives = 146/199 (73.37%), Query Frame = 0


Query: 1   MKNSIRCCISCILPCGALDVIRIVHSNGFVQEITGSVRASDVIKSHPKHVLKKPSSPFSA 60
           M+NSIRCCISCILPCGALDVIRIVHSNG+V+EI+GS++ASDV+K+HPKHVLKKPSSP S+
Sbjct: 1   MRNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSSPSSS 60

Query: 61  AAST--------AAVVPPEAEFQRGKIYFLMPLPPNSDKARSRSSAGRKKRDIANNNSTT 120
           AA            +VPPEA+ QRGKIYFLMPLPPN DK RSRSS+ RKKR   NNN   
Sbjct: 61  AACADDASALPKIVIVPPEADLQRGKIYFLMPLPPNPDKPRSRSSSRRKKRVTNNNNKNN 120

Query: 121 HHSDR------------------------SAAETNLLLSDQYLSEILSEKVSTHRERRRG 167
           HHSDR                        S + +NL +SDQYLSEILSEK STHRERRRG
Sbjct: 121 HHSDRTPPAALASATADTDDNDDNNNNNSSISMSNLHVSDQYLSEILSEKASTHRERRRG 180

[Close]

BLAST of Cp4.1LG09g08040 vs. NCBI nr
Match: XP_023519997.1 (uncharacterized protein LOC111783307, partial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 241 bits (616), Expect = 1.72e-78
Identity = 126/194 (64.95%), Postives = 145/194 (74.74%), Query Frame = 0


Query: 5   IRCCISCILPCGALDVIRIVHSNGFVQEITGSVRASDVIKSHPKHVLKKPSSPFSAAAST 64
           IRCCISCILPCGALDVIRIVHSNG+V+EI+GS++ASDV+K+HPKHVLKKPSSP S+++S 
Sbjct: 2   IRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSSPSSSSSSA 61

Query: 65  AA-----------VVPPEAEFQRGKIYFLMPLPPNSDKARSRSSAGRKKRDIANNNSTTH 124
           A            +VPPEA+ QRGKIYFLMPLPPN DK RSRSS+ RKKR   NNN   H
Sbjct: 62  ACSDDASALPKIVIVPPEADLQRGKIYFLMPLPPNPDKPRSRSSSRRKKRVTNNNNKNNH 121

Query: 125 HSDR--------------------SAAETNLLLSDQYLSEILSEKVSTHRERRRGRIGVW 167
           HSDR                    S + +NLL+SDQYLSEILSEK STHRERRRGR+GVW
Sbjct: 122 HSDRTPPAAAAAASATADPDDNNNSISMSNLLVSDQYLSEILSEKASTHRERRRGRVGVW 181

[Close]

BLAST of Cp4.1LG09g08040 vs. ExPASy TrEMBL
Match: A0A6J1KLR7 (rhoGEF domain-containing protein gxcI-like OS=Cucurbita maxima OX=3661 GN=LOC111495719 PE=4 SV=1)

HSP 1 Score: 244 bits (623), Expect = 8.19e-80
Identity = 128/199 (64.32%), Postives = 146/199 (73.37%), Query Frame = 0


Query: 1   MKNSIRCCISCILPCGALDVIRIVHSNGFVQEITGSVRASDVIKSHPKHVLKKPSSPFSA 60
           M+NSIRCCISCILPCGALDVIRIVHSNG+V+EI+GS++ASDV+K+HPKHVLKKPSSP S+
Sbjct: 1   MRNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSSPSSS 60

Query: 61  AAST--------AAVVPPEAEFQRGKIYFLMPLPPNSDKARSRSSAGRKKRDIANNNSTT 120
           AA            +VPPEA+ QRGKIYFLMPLPPN DK RSRSS+ RKKR   NNN   
Sbjct: 61  AACADDASALPKIVIVPPEADLQRGKIYFLMPLPPNPDKPRSRSSSRRKKRVTNNNNKNN 120

Query: 121 HHSDR------------------------SAAETNLLLSDQYLSEILSEKVSTHRERRRG 167
           HHSDR                        S + +NL +SDQYLSEILSEK STHRERRRG
Sbjct: 121 HHSDRTPPAALASATADTDDNDDNNNNNSSISMSNLHVSDQYLSEILSEKASTHRERRRG 180

[Close]

BLAST of Cp4.1LG09g08040 vs. ExPASy TrEMBL
Match: A0A0A0M094 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G471460 PE=4 SV=1)

HSP 1 Score: 234 bits (598), Expect = 2.77e-76
Identity = 127/185 (68.65%), Postives = 144/185 (77.84%), Query Frame = 0


Query: 1   MKNSIRCCISCILPCGALDVIRIVHSNGFVQEITGSVRASDVIKSHPKHVLKKPSSPFSA 60
           MKNSIRCCISCILPCGALDVIRIVHSNG+V+EITGS++ASDV+K+HPKHVLKKPSSP S+
Sbjct: 1   MKNSIRCCISCILPCGALDVIRIVHSNGYVEEITGSIKASDVMKAHPKHVLKKPSSPSSS 60

Query: 61  AASTAA-------VVPPEAEFQRGKIYFLMPLPPNSDKARSRSSAGRKKRDIANNN--ST 120
           AA  AA       +VPPEA+ QRGKIYFLMPLPP+ DK R R     KKR+ +NN+  +T
Sbjct: 61  AAHDAASALPKIVIVPPEADLQRGKIYFLMPLPPDPDKPRRR-----KKREYSNNHHRTT 120

Query: 121 THHSDRSAAE---------TNLLLSDQYLSEILSEKVSTHRERRRGRIGVWRPHLQSICE 167
           T  S  SA           TNLL+SD YLSEILS+K STHRERRRGR+GVWRPHLQSICE
Sbjct: 121 TAASTASAVPDTTTNSISMTNLLVSDHYLSEILSDKASTHRERRRGRVGVWRPHLQSICE 180

[Close]

BLAST of Cp4.1LG09g08040 vs. ExPASy TrEMBL
Match: A0A5A7UMG1 (DUF4228 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold96G002290 PE=4 SV=1)

HSP 1 Score: 228 bits (581), Expect = 1.18e-73
Identity = 122/188 (64.89%), Postives = 143/188 (76.06%), Query Frame = 0


Query: 1   MKNSIRCCISCILPCGALDVIRIVHSNGFVQEITGSVRASDVIKSHPKHVLKKPSSPFSA 60
           MKNSIRCCISCILPCGALDVIRIVHSNG+V+EITGS++ASDV+K+HPKHVLKKPSSP S+
Sbjct: 1   MKNSIRCCISCILPCGALDVIRIVHSNGYVEEITGSIKASDVMKAHPKHVLKKPSSPSSS 60

Query: 61  AASTAA--------VVPPEAEFQRGKIYFLMPLPPNSDKARSRSSAGRKKRDIANNNSTT 120
           +A+  A        +VPPEA+ QRGKIYFLMPLPP+ DK R R     KKR+ +NN+  T
Sbjct: 61  SAAHDAASSLPKIVIVPPEADLQRGKIYFLMPLPPDPDKPRRR-----KKREHSNNHHRT 120

Query: 121 HHSDRSAAE-------------TNLLLSDQYLSEILSEKVSTHRERRRGRIGVWRPHLQS 167
             +  +A+              TNLL+SD YLSEILS+K STHRERRRGR+GVWRPHLQS
Sbjct: 121 ITTASTASAVPDTTTNNNNISMTNLLVSDHYLSEILSDKASTHRERRRGRVGVWRPHLQS 180

[Close]

BLAST of Cp4.1LG09g08040 vs. ExPASy TrEMBL
Match: A0A1S3B8G2 (uncharacterized protein LOC103486913 OS=Cucumis melo OX=3656 GN=LOC103486913 PE=4 SV=1)

HSP 1 Score: 228 bits (581), Expect = 1.18e-73
Identity = 122/188 (64.89%), Postives = 143/188 (76.06%), Query Frame = 0


Query: 1   MKNSIRCCISCILPCGALDVIRIVHSNGFVQEITGSVRASDVIKSHPKHVLKKPSSPFSA 60
           MKNSIRCCISCILPCGALDVIRIVHSNG+V+EITGS++ASDV+K+HPKHVLKKPSSP S+
Sbjct: 1   MKNSIRCCISCILPCGALDVIRIVHSNGYVEEITGSIKASDVMKAHPKHVLKKPSSPSSS 60

Query: 61  AASTAA--------VVPPEAEFQRGKIYFLMPLPPNSDKARSRSSAGRKKRDIANNNSTT 120
           +A+  A        +VPPEA+ QRGKIYFLMPLPP+ DK R R     KKR+ +NN+  T
Sbjct: 61  SAAHDAASSLPKIVIVPPEADLQRGKIYFLMPLPPDPDKPRRR-----KKREHSNNHHRT 120

Query: 121 HHSDRSAAE-------------TNLLLSDQYLSEILSEKVSTHRERRRGRIGVWRPHLQS 167
             +  +A+              TNLL+SD YLSEILS+K STHRERRRGR+GVWRPHLQS
Sbjct: 121 ITTASTASAVPDTTTNNNNISMTNLLVSDHYLSEILSDKASTHRERRRGRVGVWRPHLQS 180

[Close]

BLAST of Cp4.1LG09g08040 vs. ExPASy TrEMBL
Match: F6HM99 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_10s0003g01310 PE=4 SV=1)

HSP 1 Score: 224 bits (572), Expect = 2.77e-72
Identity = 111/170 (65.29%), Postives = 136/170 (80.00%), Query Frame = 0


Query: 1   MKNSIRCCISCILPCGALDVIRIVHSNGFVQEITGSVRASDVIKSHPKHVLKKPSSPFS- 60
           MKN+IRCCISCILPCGALDV+RIVHSNG V+EI+G++ AS+++K+HPKHVLKKPSS    
Sbjct: 1   MKNTIRCCISCILPCGALDVVRIVHSNGHVEEISGTITASEIMKAHPKHVLKKPSSSSEE 60

Query: 61  AAASTAAVVPPEAEFQRGKIYFLMPLPPNSDKARSRSSAGRKKRDIANNNSTTHHSDRSA 120
                  VVPP+AE QRGKIYFLMP+PP  +K RSRSS  +K+RD  +NN+ THH   + 
Sbjct: 61  GVVPKIVVVPPDAELQRGKIYFLMPIPPPPEKTRSRSSTRKKRRDSESNNTNTHHHHSNT 120

Query: 121 AE-----TNLLLSDQYLSEILSEKVSTHRERRRGRIGVWRPHLQSICESP 164
           A      TNLL+SD+YLSEILSEK+ST R+RRRGR+GVWRPHL+SI E+P
Sbjct: 121 ANNTISMTNLLISDRYLSEILSEKISTQRDRRRGRVGVWRPHLESISETP 170

[Close]

BLAST of Cp4.1LG09g08040 vs. TAIR 10
Match: AT1G29195.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, 4 leaf senescence stage, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G30230.1); Has 180 Blast hits to 180 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 180; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 177.9 bits (450), Expect = 6.5e-45
Identity = 99/189 (52.38%), Postives = 129/189 (68.25%), Query Frame = 0


Query: 1   MKNSIRCCISCILPCGALDVIRIVHSNGFVQEITGSVRASDVIKSHPKHVLKKPSSPFS- 60
           MK +IRCCI+CILPCGALDVIRIVHSNG V+EI+G++ AS+++K+HPKHVLKKPSSP S 
Sbjct: 1   MKETIRCCIACILPCGALDVIRIVHSNGHVEEISGTITASEIMKAHPKHVLKKPSSPTSD 60

Query: 61  ------AAASTAAVVPPEAEFQRGKIYFLMPLPPNSDKA---------RSRSSAGRKKR- 120
                  +A+   +VPPEAE QRGKIYFLMP    SDK          +S ++A  KKR 
Sbjct: 61  HDERDVISATKIVIVPPEAELQRGKIYFLMP-ATKSDKCAGGGKIRREKSNANAVVKKRS 120

Query: 121 ----------DIANNNSTTHHSDRSAAETNLLLSDQYLSEILSEKVSTHRERRRGRIGVW 163
                     +  N   +    D++  +  L+ SD+YL+EILSEKV+T ++RR+GR+GVW
Sbjct: 121 QYRRQHRDGDEKCNGGESNDVKDKNYEKDLLISSDRYLTEILSEKVATQKDRRKGRVGVW 180

[Close]

BLAST of Cp4.1LG09g08040 vs. TAIR 10
Match: AT1G06980.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: sepal, male gametophyte, carpel; EXPRESSED DURING: 4 anthesis; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G30230.1); Has 159 Blast hits to 159 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 159; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 127.1 bits (318), Expect = 1.3e-29
Identity = 68/168 (40.48%), Postives = 102/168 (60.71%), Query Frame = 0


Query: 1   MKNSIRCCISCILPCGALDVIRIVHSNGFVQEITGSVRASDVIKSHPKHVLKKPSSPFSA 60
           M NS+RCC++C+LPCGALD+IRIVH NG+V+EIT S+ A ++++++P HVL KP S    
Sbjct: 1   MGNSLRCCLACVLPCGALDLIRIVHLNGYVEEITRSITAGEILQANPNHVLSKPCS--QG 60

Query: 61  AASTAAVVPPEAEFQRGKIYFLMPLPPNSDKARSRSSAGRKKRDIANNNSTTHHSDRSAA 120
                 ++ PE+E +RG IYFL+P     +K R R    R+K+++ N ++     +    
Sbjct: 61  VVRKILILSPESELKRGSIYFLIPDSSLPEKKRRRKDTPRRKKNLQNPSADAAGREIKGD 120

Query: 121 ETNLLLSDQYLSEILSEKVS--THRERRR----GRIGVWRPHLQSICE 163
           E  + L ++YL E++S   +   HR RRR      +  WRP L SI E
Sbjct: 121 EECVKLCEKYLEEVVSSASTGKEHRHRRRHSRSASVSTWRPLLDSISE 166

[Close]

BLAST of Cp4.1LG09g08040 vs. TAIR 10
Match: AT2G30230.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G06980.1); Has 167 Blast hits to 167 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 167; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 117.9 bits (294), Expect = 8.0e-27
Identity = 70/176 (39.77%), Postives = 104/176 (59.09%), Query Frame = 0


Query: 1   MKNSIRCCISCILPCGALDVIRIVHSNGFVQEITGSVRASDVIKSHPKHVLKKPSSPFSA 60
           M NS+RCC++C+LPCGALD+IRIVH NG V EIT  + A ++++++P HVL KP S    
Sbjct: 1   MGNSLRCCLACVLPCGALDLIRIVHLNGHVDEITSPMTAGEILQANPNHVLSKPCS--QG 60

Query: 61  AASTAAVVPPEAEFQRGKIYFLMP--LPPNSDKARSRSSAGRKKRDIANNN--STTHHSD 120
                 ++ PE+E +RG IYFL+P    P   K + R     +K+ + + N  ++ H S 
Sbjct: 61  VVRKILILSPESELKRGSIYFLIPDTSMPEKKKTKKRKELRCRKKPLESGNDINSDHVST 120

Query: 121 RSAAETN-LLLSDQYLSEI-LSEKVST------HRER--RRGRIGVWRPHLQSICE 163
               + + L L ++YL ++ LSEK+S+      HR +  R   +  WRPHL SI E
Sbjct: 121 NKDLDGHCLTLCEKYLEDVMLSEKMSSAGKENRHRRKHSRSASVSTWRPHLDSITE 174

The following BLAST results are available for this feature:

BLAST of Cp4.1LG09g08040 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG09g08040 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023542170.1	1.20e-113	100.00	uncharacterized protein LOC111802134 [Cucurbita pepo subsp. pepo]	[more]
KAG6583958.1	3.35e-81	65.48	hypothetical protein SDJN03_19890, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7019577.1	1.06e-80	64.50	hypothetical protein SDJN02_18538, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_023001645.1	1.69e-79	64.32	rhoGEF domain-containing protein gxcI-like [Cucurbita maxima]	[more]
XP_023519997.1	1.72e-78	64.95	uncharacterized protein LOC111783307, partial [Cucurbita pepo subsp. pepo]	[more]

BLAST of Cp4.1LG09g08040 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KLR7	8.19e-80	64.32	rhoGEF domain-containing protein gxcI-like OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A0A0M094	2.77e-76	68.65	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G471460 PE=4 SV=1	[more]
A0A5A7UMG1	1.18e-73	64.89	DUF4228 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A1S3B8G2	1.18e-73	64.89	uncharacterized protein LOC103486913 OS=Cucumis melo OX=3656 GN=LOC103486913 PE=...	[more]
F6HM99	2.77e-72	65.29	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_10s0003g01310 PE=4 SV=...	[more]

BLAST of Cp4.1LG09g08040 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G29195.1	6.5e-45	52.38	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G06980.1	1.3e-29	40.48	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G30230.1	8.0e-27	39.77	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025322	Protein of unknown function DUF4228, plant	PFAM	PF14009	DUF4228	coord: 6..162 e-value: 3.4E-29 score: 102.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 85..121
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 94..110
None	No IPR available	PANTHER	PTHR33052:SF3	OS01G0758500 PROTEIN	coord: 1..163
None	No IPR available	PANTHER	PTHR33052	DUF4228 DOMAIN PROTEIN-RELATED	coord: 1..163

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG09g08040.1	Cp4.1LG09g08040.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009451	RNA modification
cellular_component	GO:0043231	intracellular membrane-bounded organelle
molecular_function	GO:0003723	RNA binding