Cp4.1LG09g07950 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG09g07950
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG09: 7305067 .. 7305381 (-)
RNA-Seq ExpressionCp4.1LG09g07950
SyntenyCp4.1LG09g07950
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGAGGAGCTTCCATCTTCACACGCCACTCTCCATTTTCCTCTTCTCCTTCCTCTTCTTTTCATTCATCTGCGTCTCAAGCAATGCCTTATCCGAGACTCGCAAATTCAACTTACCCAGCTCCGATCGGGGTTTACTGAGCTTACAGAGAAGGAGAGATCGACGGATTCCTAATTGCGGCGAAAAGGTTTCGGCTCTACAGTGCTCGGAGACCCCCAATTGCCGGTGGTGCCGGAGTGATGCCATCGATGATACCTGCTTCTCCAGAGCTGAGGCGTTGAGATTGCCGCAACAGGTCTTTTCATGTGATTGA

mRNA sequence

ATGGGGAGGAGCTTCCATCTTCACACGCCACTCTCCATTTTCCTCTTCTCCTTCCTCTTCTTTTCATTCATCTGCGTCTCAAGCAATGCCTTATCCGAGACTCGCAAATTCAACTTACCCAGCTCCGATCGGGGTTTACTGAGCTTACAGAGAAGGAGAGATCGACGGATTCCTAATTGCGGCGAAAAGGTTTCGGCTCTACAGTGCTCGGAGACCCCCAATTGCCGGTGGTGCCGGAGTGATGCCATCGATGATACCTGCTTCTCCAGAGCTGAGGCGTTGAGATTGCCGCAACAGGTCTTTTCATGTGATTGA

Coding sequence (CDS)

ATGGGGAGGAGCTTCCATCTTCACACGCCACTCTCCATTTTCCTCTTCTCCTTCCTCTTCTTTTCATTCATCTGCGTCTCAAGCAATGCCTTATCCGAGACTCGCAAATTCAACTTACCCAGCTCCGATCGGGGTTTACTGAGCTTACAGAGAAGGAGAGATCGACGGATTCCTAATTGCGGCGAAAAGGTTTCGGCTCTACAGTGCTCGGAGACCCCCAATTGCCGGTGGTGCCGGAGTGATGCCATCGATGATACCTGCTTCTCCAGAGCTGAGGCGTTGAGATTGCCGCAACAGGTCTTTTCATGTGATTGA

Protein sequence

MGRSFHLHTPLSIFLFSFLFFSFICVSSNALSETRKFNLPSSDRGLLSLQRRRDRRIPNCGEKVSALQCSETPNCRWCRSDAIDDTCFSRAEALRLPQQVFSCD
Homology
BLAST of Cp4.1LG09g07950 vs. NCBI nr
Match: KAG6573331.1 (hypothetical protein SDJN03_27218, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 209 bits (531), Expect = 5.96e-68
Identity = 103/104 (99.04%), Postives = 103/104 (99.04%), Query Frame = 0

Query: 1   MGRSFHLHTPLSIFLFSFLFFSFICVSSNALSETRKFNLPSSDRGLLSLQRRRDRRIPNC 60
           MGRSFHLHTPLSIFL SFLFFSFICVSSNALSETRKFNLPSSDRGLLSLQRRRDRRIPNC
Sbjct: 1   MGRSFHLHTPLSIFLVSFLFFSFICVSSNALSETRKFNLPSSDRGLLSLQRRRDRRIPNC 60

Query: 61  GEKVSALQCSETPNCRWCRSDAIDDTCFSRAEALRLPQQVFSCD 104
           GEKVSALQCSETPNCRWCRSDAIDDTCFSRAEALRLPQQVFSCD
Sbjct: 61  GEKVSALQCSETPNCRWCRSDAIDDTCFSRAEALRLPQQVFSCD 104

BLAST of Cp4.1LG09g07950 vs. NCBI nr
Match: KAA0044701.1 (hypothetical protein E6C27_scaffold46G004570 [Cucumis melo var. makuwa] >TYK16886.1 hypothetical protein E5676_scaffold130G00180 [Cucumis melo var. makuwa])

HSP 1 Score: 119 bits (299), Expect = 6.34e-33
Identity = 58/74 (78.38%), Postives = 63/74 (85.14%), Query Frame = 0

Query: 31  LSETRKFNLPSSDRGLLSLQRRRDRRIPNCGEKVSALQCSETPNCRWCRSDAIDDTCFSR 90
           LS  RKFN PSS R L +LQRRRD++I NCGEKVSA QCS+T  CRWCRSD IDDTCF+R
Sbjct: 4   LSPDRKFNSPSSYRTLSNLQRRRDQQISNCGEKVSASQCSQTLKCRWCRSDVIDDTCFTR 63

Query: 91  AEALRLPQQVFSCD 104
           AEALRLPQQVFSCD
Sbjct: 64  AEALRLPQQVFSCD 77

BLAST of Cp4.1LG09g07950 vs. NCBI nr
Match: XP_021669958.1 (uncharacterized protein LOC110657166 [Hevea brasiliensis])

HSP 1 Score: 96.3 bits (238), Expect = 1.36e-22
Identity = 48/87 (55.17%), Postives = 61/87 (70.11%), Query Frame = 0

Query: 19  LFFSFICVSSNALSETRKFNLPSS-DRGLLSLQRRRDRRIPNCGEKVSALQCSETPNCRW 78
           +F +FI  SS++ + T K+ LP S  R LL+ QR   R+IP C E VS   CS  PNCRW
Sbjct: 79  IFLAFILQSSSSYTTTNKYPLPFSWHRSLLAAQRDSRRQIPICNEMVSGSLCSRNPNCRW 138

Query: 79  CRSDAIDDTCFSRAEALRLPQQVFSCD 104
           C+S+A+DD CF++AEA RLPQQVF CD
Sbjct: 139 CKSEALDDMCFNKAEAWRLPQQVFVCD 165

BLAST of Cp4.1LG09g07950 vs. NCBI nr
Match: KDP21149.1 (hypothetical protein JCGZ_21620 [Jatropha curcas])

HSP 1 Score: 87.8 bits (216), Expect = 5.26e-20
Identity = 40/73 (54.79%), Postives = 52/73 (71.23%), Query Frame = 0

Query: 32  SETRKFNLPSSDRGLLSLQRRRDRRIPNCGEKVSALQCSETPNCRWCRSDAIDDTCFSRA 91
           S T+  +L +S R LL+ QR   ++IPNC   V+  QCS+ P CRWC+S+A+DD CFS+ 
Sbjct: 29  STTQDPSLIASHRSLLAAQRNAQQQIPNCSGMVARSQCSQNPKCRWCKSEALDDMCFSKI 88

Query: 92  EALRLPQQVFSCD 104
           EA RLPQQVF CD
Sbjct: 89  EAWRLPQQVFVCD 101

BLAST of Cp4.1LG09g07950 vs. NCBI nr
Match: XP_038723734.1 (uncharacterized protein LOC120015395 [Tripterygium wilfordii])

HSP 1 Score: 87.8 bits (216), Expect = 6.20e-20
Identity = 47/97 (48.45%), Postives = 62/97 (63.92%), Query Frame = 0

Query: 13  IFLFSFLFFSFI--CVSSNALSETRKFNLPSSDRGLLSLQRRR---DRRIPNCGEKVSAL 72
           I L   L FSF+    SS+ ++     +  +S R +L+ QRR     R+IP+CG+ VS  
Sbjct: 10  ILLLLLLIFSFLYQASSSHGIAAGEDISSTTSYRSILAEQRRGRTGSRQIPDCGQMVSRS 69

Query: 73  QCSETPNCRWCRSDAIDDTCFSRAEALRLPQQVFSCD 104
            CS+ P CRWCRSD +DD CFS+ EA RLPQQVF+CD
Sbjct: 70  HCSQNPQCRWCRSDELDDMCFSKTEARRLPQQVFTCD 106

BLAST of Cp4.1LG09g07950 vs. ExPASy TrEMBL
Match: A0A0A0LX55 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G467180 PE=4 SV=1)

HSP 1 Score: 154 bits (388), Expect = 1.81e-46
Identity = 81/102 (79.41%), Postives = 86/102 (84.31%), Query Frame = 0

Query: 3   RSFHLHTPLSIFLFSFLFFSFICVSSNALSETRKFNLPSSDRGLLSLQRRRDRRIPNCGE 62
           RS HL +PLSIFL SFLFF FI  S NALS  RKFN PSS R L SLQRRRD++I NCGE
Sbjct: 4   RSSHLSSPLSIFLISFLFFFFI--SCNALSPDRKFNSPSSYRTLSSLQRRRDQQISNCGE 63

Query: 63  KVSALQCSETPNCRWCRSDAIDDTCFSRAEALRLPQQVFSCD 104
           KVSALQCS+TP CRWCRSD IDDTCF+RAEALRLPQQVFSCD
Sbjct: 64  KVSALQCSQTPKCRWCRSDIIDDTCFTRAEALRLPQQVFSCD 103

BLAST of Cp4.1LG09g07950 vs. ExPASy TrEMBL
Match: A0A5A7TT10 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G00180 PE=4 SV=1)

HSP 1 Score: 119 bits (299), Expect = 3.07e-33
Identity = 58/74 (78.38%), Postives = 63/74 (85.14%), Query Frame = 0

Query: 31  LSETRKFNLPSSDRGLLSLQRRRDRRIPNCGEKVSALQCSETPNCRWCRSDAIDDTCFSR 90
           LS  RKFN PSS R L +LQRRRD++I NCGEKVSA QCS+T  CRWCRSD IDDTCF+R
Sbjct: 4   LSPDRKFNSPSSYRTLSNLQRRRDQQISNCGEKVSASQCSQTLKCRWCRSDVIDDTCFTR 63

Query: 91  AEALRLPQQVFSCD 104
           AEALRLPQQVFSCD
Sbjct: 64  AEALRLPQQVFSCD 77

BLAST of Cp4.1LG09g07950 vs. ExPASy TrEMBL
Match: A0A067JNS3 (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_21620 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 2.55e-20
Identity = 40/73 (54.79%), Postives = 52/73 (71.23%), Query Frame = 0

Query: 32  SETRKFNLPSSDRGLLSLQRRRDRRIPNCGEKVSALQCSETPNCRWCRSDAIDDTCFSRA 91
           S T+  +L +S R LL+ QR   ++IPNC   V+  QCS+ P CRWC+S+A+DD CFS+ 
Sbjct: 29  STTQDPSLIASHRSLLAAQRNAQQQIPNCSGMVARSQCSQNPKCRWCKSEALDDMCFSKI 88

Query: 92  EALRLPQQVFSCD 104
           EA RLPQQVF CD
Sbjct: 89  EAWRLPQQVFVCD 101

BLAST of Cp4.1LG09g07950 vs. ExPASy TrEMBL
Match: A0A1R3H5C1 (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_31211 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 3.42e-20
Identity = 38/61 (62.30%), Postives = 46/61 (75.41%), Query Frame = 0

Query: 44  RGLLSLQRRRDRRIPNCGEKVSALQCSETPNCRWCRSDAIDDTCFSRAEALRLPQQVFSC 103
           R LL+LQR    +IPNCGE +S  QC + P CRWCRS+A+DD CF ++EA RLPQQVF C
Sbjct: 39  RSLLALQRNNKNQIPNCGEMMSRSQCLQNPKCRWCRSEALDDMCFIKSEAWRLPQQVFLC 98

BLAST of Cp4.1LG09g07950 vs. ExPASy TrEMBL
Match: A0A251IYI8 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_16G043700 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 5.12e-20
Identity = 47/92 (51.09%), Postives = 62/92 (67.39%), Query Frame = 0

Query: 14  FLFSFLFFSFICVSSNALSETRKFNLP-SSDRGLLSLQRRRDRRIPNCGEKVSALQCSET 73
           F F  +F + I  SS++ + + ++ LP  S R LL+ QR R ++IP C E VS   CS  
Sbjct: 10  FPFLLIFVAVILQSSSSYTISSRYPLPVPSHRTLLASQRDRRQQIPICSEMVSRSLCSPN 69

Query: 74  PNCRWCRSDAIDDTCFSRAEALRLPQQVFSCD 104
           PNCRWC S+A+DD CFS+AEA RLPQQVF C+
Sbjct: 70  PNCRWCVSEALDDMCFSKAEAWRLPQQVFVCN 101

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6573331.15.96e-6899.04hypothetical protein SDJN03_27218, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0044701.16.34e-3378.38hypothetical protein E6C27_scaffold46G004570 [Cucumis melo var. makuwa] >TYK1688... [more]
XP_021669958.11.36e-2255.17uncharacterized protein LOC110657166 [Hevea brasiliensis][more]
KDP21149.15.26e-2054.79hypothetical protein JCGZ_21620 [Jatropha curcas][more]
XP_038723734.16.20e-2048.45uncharacterized protein LOC120015395 [Tripterygium wilfordii][more]
Match NameE-valueIdentityDescription
A0A0A0LX551.81e-4679.41Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G467180 PE=4 SV=1[more]
A0A5A7TT103.07e-3378.38Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A067JNS32.55e-2054.79Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_21620 PE=4 SV=1[more]
A0A1R3H5C13.42e-2062.30Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_31211 PE=4 SV=1[more]
A0A251IYI85.12e-2051.09Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_16G043700 PE=4 SV=... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36896OS01G0729500 PROTEINcoord: 18..104

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG09g07950.1Cp4.1LG09g07950.1mRNA